0.015823 0.000000 0.000000 0.000000 0.015823 0.000000 0.000000 0.000000 0.009292 0.00000 0.00000 0.00000 Yuan, Y.A. Fu, Q. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 63.198 63.198 107.617 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 R C N 85 N O N 86 R C N 87 N N N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 R C N 111 N C N 112 N O N 113 N C N 114 N S N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N O N 124 N P N 125 N O N 126 N O N 127 N O N 128 N C N 129 R C N 130 N O N 131 S C N 132 N O N 133 R C N 134 N O N 135 R C Y 136 N N Y 137 N C Y 138 N N Y 139 N C N 140 N C N 141 N O N 142 N N N 143 N C N 144 N N N 145 N N Y 146 N C N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C N 166 N C N 167 N C N 168 N O N 169 N N N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N O N 189 N O N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 N C N 202 N C N 203 N O N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C Y 215 N C Y 216 N N Y 217 N C Y 218 N C Y 219 N N N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N O N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 S C N 239 N C N 240 N C N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N C N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N C N 285 N C N 286 N N N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N C N 309 N S N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C N 351 N C N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N O N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 R C N 382 N O N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N N Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N C Y 431 N C N 432 N O N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N N N 446 S C N 447 N C N 448 N O N 449 N C N 450 N C N 451 N C N 452 N O N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing Y 143 N sing Y 144 N sing Y 145 N doub N 146 N sing Y 147 N sing N 148 N sing Y 149 N doub N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing Y 216 N sing Y 217 N doub Y 218 N doub N 219 N sing Y 220 N sing N 221 N sing Y 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing Y 324 N doub Y 325 N sing Y 326 N sing N 327 N sing Y 328 N doub N 329 N sing Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N sing Y 402 N doub N 403 N sing Y 404 N doub N 405 N sing Y 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing Y 421 N doub Y 422 N sing Y 423 N sing N 424 N sing Y 425 N doub N 426 N sing Y 427 N doub N 428 N sing Y 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 41 3457 3470 10.1093/nar/gkt042 23361462 Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9). 2013 10.2210/pdb3vyx/pdb pdb_00003vyx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-05-29 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 BL17U SSRF 0.9792 SYNCHROTRON SSRF BEAMLINE BL17U 13076.770 ATP-dependent RNA helicase A 3.6.4.13 UNP residues 152-264 1 man polymer 3206.980 RNA (5'-R(P*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') 2 syn polymer This sequence is synthesized in vitro. 18.015 water 82 nat water RHA, DEAH box protein 9, Leukophysin, LKP, Nuclear DNA helicase II, NDH II no no MKEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE HGSNKKLAAQSCALSLVRQLYHLGVVEAYSGLTK MKEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE HGSNKKLAAQSCALSLVRQLYHLGVVEAYSGLTK A polypeptide(L) no no GCGCGCGCGC GCGCGCGCGC B,C polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample DHX9, DDX9, LKP, NDH2 9606 Homo sapiens 562 Escherichia coli plasmid 1 2.76 55.38 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 4000, KNO3, Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 4.913 1 19 B 1 C 10 -1.245 B_G1:C10_C 1 -10.157 -0.144 0.235 -0.168 6.544 1 19 B 2 C 9 -2.502 B_C2:G9_C 2 -16.541 0.163 -0.129 -0.311 -3.876 1 19 B 3 C 8 -3.890 B_G3:C8_C 3 -17.619 -0.103 -0.160 -0.255 -3.536 1 19 B 4 C 7 -1.268 B_C4:G7_C 4 -13.288 0.217 0.241 -0.196 -0.025 1 19 B 5 C 6 -0.611 B_G5:C6_C 5 -3.931 -0.252 -0.011 -0.217 5.059 1 19 B 6 C 5 0.575 B_C6:G5_C 6 -9.515 0.100 -0.137 -0.039 -5.136 1 19 B 7 C 4 2.020 B_G7:C4_C 7 -12.674 -0.225 0.050 -0.180 0.860 1 19 B 8 C 3 0.209 B_C8:G3_C 8 -11.741 0.231 0.030 -0.248 1.079 1 19 B 9 C 2 -2.836 B_G9:C2_C 9 -14.380 -0.062 0.223 -0.173 4.352 1 19 B 10 C 1 0.101 B_C10:G1_C 10 -9.867 0.284 0.166 -0.226 3.044 34.663 B B 1 2 7.415 C C 10 9 3.248 4.406 -0.511 -1.501 BB_G1C2:G9C10_CC 1 -0.419 0.705 34.388 -3.173 0.795 2.379 34.242 B B 2 3 25.934 C C 9 8 3.394 14.781 -0.657 -1.748 BB_C2G3:C8G9_CC 2 -2.482 4.354 30.876 -5.138 0.752 3.020 35.612 B B 3 4 9.428 C C 8 7 3.245 5.741 0.555 -1.027 BB_G3C4:G7C8_CC 3 -1.503 2.469 35.130 -2.483 -1.119 2.844 24.862 B B 4 5 8.863 C C 7 6 3.131 3.794 0.983 -2.263 BB_C4G5:C6G7_CC 4 2.745 -6.413 24.424 -6.308 -1.522 2.987 27.849 B B 5 6 3.539 C C 6 5 3.133 1.702 -0.222 -2.327 BB_G5C6:G5C6_CC 5 0.132 -0.275 27.798 -5.217 0.491 2.962 30.916 B B 6 7 14.484 C C 5 4 3.515 7.642 -0.435 -1.926 BB_C6G7:C4G5_CC 6 -1.463 2.772 29.945 -5.102 0.531 3.002 35.040 B B 7 8 9.668 C C 4 3 3.179 5.796 -0.337 -0.886 BB_G7C8:G3C4_CC 7 -0.729 1.216 34.565 -2.300 0.456 2.544 30.681 B B 8 9 18.615 C C 3 2 3.174 9.688 0.298 -1.548 BB_C8G9:C2G3_CC 8 0.390 -0.750 29.144 -4.636 -0.494 3.020 34.447 B B 9 10 7.028 C C 2 1 3.192 4.152 0.349 -1.359 BB_G9C10:G1C2_CC 9 1.012 -1.714 34.189 -2.910 -0.440 citation database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model entity pdbx_entity_src_syn repository Initial release Database references Data collection Refinement description Source and taxonomy Structure summary 1 0 2013-02-13 1 1 2022-08-24 1 2 2023-11-08 1 3 2024-03-20 _citation.journal_volume _citation.page_first _citation.page_last _citation.title _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _entity.details PDBJ Y PDBJ 2012-10-05 REL REL HOH water This sequence is synthesized in vitro. sample 1UIL PDB experimental model HOH 4 3 HOH HOH 301 A HOH 6 3 HOH HOH 302 A HOH 10 3 HOH HOH 303 A HOH 12 3 HOH HOH 304 A HOH 16 3 HOH HOH 305 A HOH 18 3 HOH HOH 306 A HOH 19 3 HOH HOH 307 A HOH 21 3 HOH HOH 308 A HOH 22 3 HOH HOH 309 A HOH 23 3 HOH HOH 310 A HOH 25 3 HOH HOH 311 A HOH 27 3 HOH HOH 312 A HOH 28 3 HOH HOH 313 A HOH 29 3 HOH HOH 314 A HOH 30 3 HOH HOH 315 A HOH 31 3 HOH HOH 316 A HOH 32 3 HOH HOH 317 A HOH 33 3 HOH HOH 318 A HOH 34 3 HOH HOH 319 A HOH 35 3 HOH HOH 320 A HOH 36 3 HOH HOH 321 A HOH 39 3 HOH HOH 322 A HOH 40 3 HOH HOH 323 A HOH 42 3 HOH HOH 324 A HOH 43 3 HOH HOH 325 A HOH 46 3 HOH HOH 326 A HOH 47 3 HOH HOH 327 A HOH 48 3 HOH HOH 328 A HOH 49 3 HOH HOH 329 A HOH 50 3 HOH HOH 330 A HOH 54 3 HOH HOH 331 A HOH 55 3 HOH HOH 332 A HOH 59 3 HOH HOH 333 A HOH 60 3 HOH HOH 334 A HOH 61 3 HOH HOH 335 A HOH 65 3 HOH HOH 336 A HOH 68 3 HOH HOH 337 A HOH 74 3 HOH HOH 338 A HOH 76 3 HOH HOH 339 A HOH 77 3 HOH HOH 340 A HOH 78 3 HOH HOH 341 A HOH 79 3 HOH HOH 342 A HOH 80 3 HOH HOH 343 A HOH 81 3 HOH HOH 344 A HOH 82 3 HOH HOH 345 A HOH 70 3 HOH HOH 346 A HOH 1 3 HOH HOH 101 B HOH 2 3 HOH HOH 102 B HOH 5 3 HOH HOH 103 B HOH 8 3 HOH HOH 104 B HOH 13 3 HOH HOH 105 B HOH 15 3 HOH HOH 106 B HOH 17 3 HOH HOH 107 B HOH 20 3 HOH HOH 108 B HOH 26 3 HOH HOH 109 B HOH 37 3 HOH HOH 110 B HOH 41 3 HOH HOH 111 B HOH 51 3 HOH HOH 112 B HOH 52 3 HOH HOH 113 B HOH 58 3 HOH HOH 114 B HOH 64 3 HOH HOH 115 B HOH 69 3 HOH HOH 116 B HOH 71 3 HOH HOH 117 B HOH 73 3 HOH HOH 118 B HOH 75 3 HOH HOH 119 B HOH 11 3 HOH HOH 120 B HOH 3 3 HOH HOH 101 C HOH 7 3 HOH HOH 102 C HOH 9 3 HOH HOH 103 C HOH 14 3 HOH HOH 104 C HOH 24 3 HOH HOH 105 C HOH 38 3 HOH HOH 106 C HOH 44 3 HOH HOH 107 C HOH 45 3 HOH HOH 108 C HOH 53 3 HOH HOH 109 C HOH 56 3 HOH HOH 110 C HOH 57 3 HOH HOH 111 C HOH 62 3 HOH HOH 112 C HOH 63 3 HOH HOH 113 C HOH 66 3 HOH HOH 114 C HOH 67 3 HOH HOH 115 C HOH 72 3 HOH HOH 116 C n 1 151 A n 2 152 A n 3 153 A n 4 154 A n 5 155 A n 6 156 A n 7 157 A n 8 158 A n 9 159 A n 10 160 A n 11 161 A n 12 162 A n 13 163 A n 14 164 A n 15 165 A n 16 166 A n 17 167 A n 18 168 A ASN 169 n 19 ASN 169 A ALA 170 n 20 ALA 170 A GLY 171 n 21 GLY 171 A LEU 172 n 22 LEU 172 A HIS 173 n 23 HIS 173 A GLY 174 n 24 GLY 174 A ASN 175 n 25 ASN 175 A TRP 176 n 26 TRP 176 A THR 177 n 27 THR 177 A LEU 178 n 28 LEU 178 A GLU 179 n 29 GLU 179 A ASN 180 n 30 ASN 180 A ALA 181 n 31 ALA 181 A LYS 182 n 32 LYS 182 A ALA 183 n 33 ALA 183 A ARG 184 n 34 ARG 184 A LEU 185 n 35 LEU 185 A ASN 186 n 36 ASN 186 A GLN 187 n 37 GLN 187 A TYR 188 n 38 TYR 188 A PHE 189 n 39 PHE 189 A GLN 190 n 40 GLN 190 A LYS 191 n 41 LYS 191 A GLU 192 n 42 GLU 192 A LYS 193 n 43 LYS 193 A ILE 194 n 44 ILE 194 A GLN 195 n 45 GLN 195 A GLY 196 n 46 GLY 196 A GLU 197 n 47 GLU 197 A TYR 198 n 48 TYR 198 A LYS 199 n 49 LYS 199 A TYR 200 n 50 TYR 200 A THR 201 n 51 THR 201 A GLN 202 n 52 GLN 202 A VAL 203 n 53 VAL 203 A GLY 204 n 54 GLY 204 A PRO 205 n 55 PRO 205 A ASP 206 n 56 ASP 206 A HIS 207 n 57 HIS 207 A ASN 208 n 58 ASN 208 A ARG 209 n 59 ARG 209 A SER 210 n 60 SER 210 A PHE 211 n 61 PHE 211 A ILE 212 n 62 ILE 212 A ALA 213 n 63 ALA 213 A GLU 214 n 64 GLU 214 A MET 215 n 65 MET 215 A THR 216 n 66 THR 216 A ILE 217 n 67 ILE 217 A TYR 218 n 68 TYR 218 A ILE 219 n 69 ILE 219 A LYS 220 n 70 LYS 220 A GLN 221 n 71 GLN 221 A LEU 222 n 72 LEU 222 A GLY 223 n 73 GLY 223 A ARG 224 n 74 ARG 224 A ARG 225 n 75 ARG 225 A ILE 226 n 76 ILE 226 A PHE 227 n 77 PHE 227 A ALA 228 n 78 ALA 228 A ARG 229 n 79 ARG 229 A GLU 230 n 80 GLU 230 A HIS 231 n 81 HIS 231 A GLY 232 n 82 GLY 232 A SER 233 n 83 SER 233 A ASN 234 n 84 ASN 234 A LYS 235 n 85 LYS 235 A LYS 236 n 86 LYS 236 A LEU 237 n 87 LEU 237 A ALA 238 n 88 ALA 238 A ALA 239 n 89 ALA 239 A GLN 240 n 90 GLN 240 A SER 241 n 91 SER 241 A CYS 242 n 92 CYS 242 A ALA 243 n 93 ALA 243 A LEU 244 n 94 LEU 244 A SER 245 n 95 SER 245 A LEU 246 n 96 LEU 246 A VAL 247 n 97 VAL 247 A ARG 248 n 98 ARG 248 A GLN 249 n 99 GLN 249 A LEU 250 n 100 LEU 250 A TYR 251 n 101 TYR 251 A HIS 252 n 102 HIS 252 A LEU 253 n 103 LEU 253 A GLY 254 n 104 GLY 254 A VAL 255 n 105 VAL 255 A VAL 256 n 106 VAL 256 A GLU 257 n 107 GLU 257 A ALA 258 n 108 ALA 258 A TYR 259 n 109 TYR 259 A SER 260 n 110 SER 260 A GLY 261 n 111 GLY 261 A LEU 262 n 112 LEU 262 A THR 263 n 113 THR 263 A n 114 264 A G 1 n 1 G 1 B C 2 n 2 C 2 B G 3 n 3 G 3 B C 4 n 4 C 4 B G 5 n 5 G 5 B C 6 n 6 C 6 B G 7 n 7 G 7 B C 8 n 8 C 8 B G 9 n 9 G 9 B C 10 n 10 C 10 B G 1 n 1 G 1 C C 2 n 2 C 2 C G 3 n 3 G 3 C C 4 n 4 C 4 C G 5 n 5 G 5 C C 6 n 6 C 6 C G 7 n 7 G 7 C C 8 n 8 C 8 C G 9 n 9 G 9 C C 10 n 10 C 10 C 0.9803 0.3237 0.9891 1.4360 -0.9249 6.3012 -0.0684 0.0618 0.0172 0.3851 0.1406 0.1412 -0.3765 -0.1047 -0.0722 0.0259 0.0467 0.0216 -0.1244 0.0159 -0.0333 refined 8.1503 -14.1253 -12.1455 X-RAY DIFFRACTION 0.0044 -0.0029 0.0980 0.5870 -0.1225 2.1991 0.2396 0.1381 0.1469 -0.1233 0.2096 0.0458 0.4140 -0.5608 -0.4492 0.0147 -0.0337 0.0167 0.0582 0.1159 -0.0226 refined -1.1128 -30.3301 -5.1455 X-RAY DIFFRACTION 1.6699 -0.7089 -0.0056 1.9038 -0.9935 1.9420 0.1330 -0.1063 0.1020 0.4210 0.2214 0.1125 0.1896 -0.2084 -0.3544 -0.0004 0.0654 0.0748 -0.0004 0.0920 -0.0435 refined 0.1087 -30.8968 -2.0893 X-RAY DIFFRACTION A 169 A 263 X-RAY DIFFRACTION 1 B 1 B 10 X-RAY DIFFRACTION 2 C 1 C 10 X-RAY DIFFRACTION 3 author_and_software_defined_assembly PISA 3 trimeric 1960 -13 9110 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 201 A N THR 51 A O ILE 212 A O ILE 62 A N ILE 217 A N ILE 67 A O ILE 226 A O ILE 76 1 A MET 151 A MET 1 1 Y 1 A LYS 152 A LYS 2 1 Y 1 A GLU 153 A GLU 3 1 Y 1 A GLU 154 A GLU 4 1 Y 1 A GLN 155 A GLN 5 1 Y 1 A GLU 156 A GLU 6 1 Y 1 A VAL 157 A VAL 7 1 Y 1 A GLN 158 A GLN 8 1 Y 1 A ALA 159 A ALA 9 1 Y 1 A THR 160 A THR 10 1 Y 1 A LEU 161 A LEU 11 1 Y 1 A GLU 162 A GLU 12 1 Y 1 A SER 163 A SER 13 1 Y 1 A GLU 164 A GLU 14 1 Y 1 A GLU 165 A GLU 15 1 Y 1 A VAL 166 A VAL 16 1 Y 1 A ASP 167 A ASP 17 1 Y 1 A LEU 168 A LEU 18 1 Y 1 A LYS 264 A LYS 114 1 Y 1 A A O NH1 GLY ARG 204 209 1.87 1 A A OD1 NH2 ASP ARG 206 209 1.97 1 -6.90 1.00 102.60 95.70 B B B C4' C3' C2' G G G 5 5 5 N 1 -10.15 1.50 119.60 109.45 C C C OP1 P OP2 G G G 1 1 1 N 1 4.72 0.70 108.50 113.22 C C C O4' C1' N1 C C C 8 8 8 N 1 5.55 0.70 108.50 114.05 C C C O4' C1' N1 C C C 10 10 10 N 1 B B P OP3 G G 1 1 -0.124 0.012 1.607 1.483 N 1 C C P OP3 G G 1 1 -0.131 0.012 1.607 1.476 N 1 A ASN 208 -146.36 53.35 33.826 1.29 0.00 0.00 1.29 0.00 -2.57 0.950 0.916 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.26312 0.19310 0.19639 2.29 41.27 497 9800 9800 4.8 99.87 11.204 0.143 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.235 0.222 0.80 0.80 1.20 1UIL MAXIMUM LIKELIHOOD MASK 2.29 41.27 82 1279 0 432 765 0.015 0.021 1260 1.715 2.377 1796 6.694 5.000 94 34.245 23.500 40 17.337 15.000 140 25.845 15.000 6 0.099 0.200 210 0.008 0.020 803 0.191 0.200 485 0.286 0.200 835 0.193 0.200 70 0.133 0.200 45 0.213 0.200 7 0.959 1.500 480 1.524 2.000 740 1.932 3.000 1042 2.698 4.500 1056 0.362 0.218 2.354 38 696 20 99.06 2.29 50 3VYX 9800 9800 2 2 0.095 1 13.8 100 2.3 2.34 0.322 1 12.5 100 data collection HKL-2000 phasing MOLREP refinement REFMAC 5.2.0019 data reduction HKL-2000 data scaling HKL-2000 Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase (DHX9) 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N A ASN 169 A ASN 19 HELX_P A GLY 174 A GLY 24 5 1 6 A ASN 180 A ASN 30 HELX_P A GLU 192 A GLU 42 1 2 13 A PRO 205 A PRO 55 HELX_P A ARG 209 A ARG 59 5 3 5 A LYS 220 A LYS 70 HELX_P A GLY 223 A GLY 73 5 4 4 A ASN 234 A ASN 84 HELX_P A LEU 253 A LEU 103 1 5 20 hydrog WATSON-CRICK B G 1 B N1 G 1 1_555 C C 10 C N3 C 10 1_555 hydrog WATSON-CRICK B G 1 B N2 G 1 1_555 C C 10 C O2 C 10 1_555 hydrog WATSON-CRICK B G 1 B O6 G 1 1_555 C C 10 C N4 C 10 1_555 hydrog WATSON-CRICK B C 2 B N3 C 2 1_555 C G 9 C N1 G 9 1_555 hydrog WATSON-CRICK B C 2 B N4 C 2 1_555 C G 9 C O6 G 9 1_555 hydrog WATSON-CRICK B C 2 B O2 C 2 1_555 C G 9 C N2 G 9 1_555 hydrog WATSON-CRICK B G 3 B N1 G 3 1_555 C C 8 C N3 C 8 1_555 hydrog WATSON-CRICK B G 3 B N2 G 3 1_555 C C 8 C O2 C 8 1_555 hydrog WATSON-CRICK B G 3 B O6 G 3 1_555 C C 8 C N4 C 8 1_555 hydrog WATSON-CRICK B C 4 B N3 C 4 1_555 C G 7 C N1 G 7 1_555 hydrog WATSON-CRICK B C 4 B N4 C 4 1_555 C G 7 C O6 G 7 1_555 hydrog WATSON-CRICK B C 4 B O2 C 4 1_555 C G 7 C N2 G 7 1_555 hydrog WATSON-CRICK B G 5 B N1 G 5 1_555 C C 6 C N3 C 6 1_555 hydrog WATSON-CRICK B G 5 B N2 G 5 1_555 C C 6 C O2 C 6 1_555 hydrog WATSON-CRICK B G 5 B O6 G 5 1_555 C C 6 C N4 C 6 1_555 hydrog WATSON-CRICK B C 6 B N3 C 6 1_555 C G 5 C N1 G 5 1_555 hydrog WATSON-CRICK B C 6 B N4 C 6 1_555 C G 5 C O6 G 5 1_555 hydrog WATSON-CRICK B C 6 B O2 C 6 1_555 C G 5 C N2 G 5 1_555 hydrog WATSON-CRICK B G 7 B N1 G 7 1_555 C C 4 C N3 C 4 1_555 hydrog WATSON-CRICK B G 7 B N2 G 7 1_555 C C 4 C O2 C 4 1_555 hydrog WATSON-CRICK B G 7 B O6 G 7 1_555 C C 4 C N4 C 4 1_555 hydrog WATSON-CRICK B C 8 B N3 C 8 1_555 C G 3 C N1 G 3 1_555 hydrog WATSON-CRICK B C 8 B N4 C 8 1_555 C G 3 C O6 G 3 1_555 hydrog WATSON-CRICK B C 8 B O2 C 8 1_555 C G 3 C N2 G 3 1_555 hydrog WATSON-CRICK B G 9 B N1 G 9 1_555 C C 2 C N3 C 2 1_555 hydrog WATSON-CRICK B G 9 B N2 G 9 1_555 C C 2 C O2 C 2 1_555 hydrog WATSON-CRICK B G 9 B O6 G 9 1_555 C C 2 C N4 C 2 1_555 hydrog WATSON-CRICK B C 10 B N3 C 10 1_555 C G 1 C N1 G 1 1_555 hydrog WATSON-CRICK B C 10 B N4 C 10 1_555 C G 1 C O6 G 1 1_555 hydrog WATSON-CRICK B C 10 B O2 C 10 1_555 C G 1 C N2 G 1 1_555 HYDROLASE/RNA protein-dsRNA complex, dsRBD fold, dsRNA binding, protein-protein interaction, HYDROLASE-RNA complex DHX9_HUMAN UNP 1 152 Q08211 KEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREH GSNKKLAAQSCALSLVRQLYHLGVVEAYSGLTK 3VYX PDB 2 3VYX 152 264 3VYX 152 264 Q08211 A 1 2 114 1 10 3VYX 1 10 3VYX B 2 1 10 1 10 3VYX 1 10 3VYX C 2 1 10 1 expression tag MET 151 3VYX A Q08211 UNP 1 3 anti-parallel anti-parallel A LYS 199 A LYS 49 A VAL 203 A VAL 53 A SER 210 A SER 60 A TYR 218 A TYR 68 A ARG 225 A ARG 75 A GLY 232 A GLY 82 96 P 43 21 2