0.008109
0.000000
0.000105
-0.000000
0.022841
0.000000
0.000000
-0.000000
0.027025
0.00000
0.00000
0.00000
Bae, E.
Yoon, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.75
90.00
123.323
43.781
37.006
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
3799
3810
10.1016/j.jmb.2013.02.032
23500492
Conservation and Variability in the Structure and Function of the Cas5d Endoribonuclease in the CRISPR-Mediated Microbial Immune System
2013
10.2210/pdb3vzh/pdb
pdb_00003vzh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-05-14
ADSC QUANTUM 270
DCM Si (111) Crystal
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
6B
PAL/PLS
0.9795
SYNCHROTRON
PAL/PLS BEAMLINE 6B
27958.533
Putative uncharacterized protein
1
man
polymer
18.015
water
154
nat
water
no
no
GHMYRSRDFYVRVSGQRALFTNPATKGGSERSSYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLH
DYSADLSYVSYLSDVVYLIKFHFVWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRECLGLVDDISQEEYETTV
SYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMKNGVITFKAQSECDIVNTLSSYAFKAPEEIKSVNDECMEYDAME
KGEN
GHMYRSRDFYVRVSGQRALFTNPATKGGSERSSYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLH
DYSADLSYVSYLSDVVYLIKFHFVWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRECLGLVDDISQEEYETTV
SYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMKNGVITFKAQSECDIVNTLSSYAFKAPEEIKSVNDECMEYDAME
KGEN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
M5005_Spy1290, SPy_1566
301447
Streptococcus pyogenes serotype M1
562
Escherichia coli
1
1.79
31.15
VAPOR DIFFUSION, SITTING DROP
6.5
20% PEG3350, 0.2M sodium bromide, 0.1M Bis-Tris propane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2013-03-27
1
1
2013-10-23
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
PDBJ
Y
PDBJ
2012-10-12
REL
REL
HOH
water
3KG4
PDB
experimental model
HOH
1
2
HOH
HOH
301
A
HOH
2
2
HOH
HOH
302
A
HOH
3
2
HOH
HOH
303
A
HOH
4
2
HOH
HOH
304
A
HOH
5
2
HOH
HOH
305
A
HOH
6
2
HOH
HOH
306
A
HOH
7
2
HOH
HOH
307
A
HOH
8
2
HOH
HOH
308
A
HOH
9
2
HOH
HOH
309
A
HOH
10
2
HOH
HOH
310
A
HOH
11
2
HOH
HOH
311
A
HOH
12
2
HOH
HOH
312
A
HOH
13
2
HOH
HOH
313
A
HOH
14
2
HOH
HOH
314
A
HOH
15
2
HOH
HOH
315
A
HOH
16
2
HOH
HOH
316
A
HOH
17
2
HOH
HOH
317
A
HOH
19
2
HOH
HOH
318
A
HOH
20
2
HOH
HOH
319
A
HOH
21
2
HOH
HOH
320
A
HOH
22
2
HOH
HOH
321
A
HOH
23
2
HOH
HOH
322
A
HOH
24
2
HOH
HOH
323
A
HOH
25
2
HOH
HOH
324
A
HOH
26
2
HOH
HOH
325
A
HOH
27
2
HOH
HOH
326
A
HOH
28
2
HOH
HOH
327
A
HOH
29
2
HOH
HOH
328
A
HOH
30
2
HOH
HOH
329
A
HOH
31
2
HOH
HOH
330
A
HOH
32
2
HOH
HOH
331
A
HOH
33
2
HOH
HOH
332
A
HOH
34
2
HOH
HOH
333
A
HOH
35
2
HOH
HOH
334
A
HOH
36
2
HOH
HOH
335
A
HOH
37
2
HOH
HOH
336
A
HOH
38
2
HOH
HOH
337
A
HOH
39
2
HOH
HOH
338
A
HOH
40
2
HOH
HOH
339
A
HOH
41
2
HOH
HOH
340
A
HOH
42
2
HOH
HOH
341
A
HOH
43
2
HOH
HOH
342
A
HOH
44
2
HOH
HOH
343
A
HOH
45
2
HOH
HOH
344
A
HOH
46
2
HOH
HOH
345
A
HOH
47
2
HOH
HOH
346
A
HOH
48
2
HOH
HOH
347
A
HOH
49
2
HOH
HOH
348
A
HOH
50
2
HOH
HOH
349
A
HOH
51
2
HOH
HOH
350
A
HOH
52
2
HOH
HOH
351
A
HOH
53
2
HOH
HOH
352
A
HOH
54
2
HOH
HOH
353
A
HOH
55
2
HOH
HOH
354
A
HOH
56
2
HOH
HOH
355
A
HOH
57
2
HOH
HOH
356
A
HOH
58
2
HOH
HOH
357
A
HOH
59
2
HOH
HOH
358
A
HOH
61
2
HOH
HOH
359
A
HOH
62
2
HOH
HOH
360
A
HOH
63
2
HOH
HOH
361
A
HOH
65
2
HOH
HOH
362
A
HOH
66
2
HOH
HOH
363
A
HOH
67
2
HOH
HOH
364
A
HOH
68
2
HOH
HOH
365
A
HOH
69
2
HOH
HOH
366
A
HOH
70
2
HOH
HOH
367
A
HOH
71
2
HOH
HOH
368
A
HOH
72
2
HOH
HOH
369
A
HOH
73
2
HOH
HOH
370
A
HOH
74
2
HOH
HOH
371
A
HOH
75
2
HOH
HOH
372
A
HOH
76
2
HOH
HOH
373
A
HOH
77
2
HOH
HOH
374
A
HOH
79
2
HOH
HOH
375
A
HOH
80
2
HOH
HOH
376
A
HOH
82
2
HOH
HOH
377
A
HOH
83
2
HOH
HOH
378
A
HOH
84
2
HOH
HOH
379
A
HOH
85
2
HOH
HOH
380
A
HOH
86
2
HOH
HOH
381
A
HOH
88
2
HOH
HOH
382
A
HOH
89
2
HOH
HOH
383
A
HOH
90
2
HOH
HOH
384
A
HOH
91
2
HOH
HOH
385
A
HOH
92
2
HOH
HOH
386
A
HOH
93
2
HOH
HOH
387
A
HOH
94
2
HOH
HOH
388
A
HOH
95
2
HOH
HOH
389
A
HOH
96
2
HOH
HOH
390
A
HOH
97
2
HOH
HOH
391
A
HOH
98
2
HOH
HOH
392
A
HOH
99
2
HOH
HOH
393
A
HOH
100
2
HOH
HOH
394
A
HOH
101
2
HOH
HOH
395
A
HOH
103
2
HOH
HOH
396
A
HOH
104
2
HOH
HOH
397
A
HOH
105
2
HOH
HOH
398
A
HOH
108
2
HOH
HOH
399
A
HOH
110
2
HOH
HOH
400
A
HOH
112
2
HOH
HOH
401
A
HOH
115
2
HOH
HOH
402
A
HOH
116
2
HOH
HOH
403
A
HOH
117
2
HOH
HOH
404
A
HOH
118
2
HOH
HOH
405
A
HOH
120
2
HOH
HOH
406
A
HOH
121
2
HOH
HOH
407
A
HOH
122
2
HOH
HOH
408
A
HOH
125
2
HOH
HOH
409
A
HOH
126
2
HOH
HOH
410
A
HOH
128
2
HOH
HOH
411
A
HOH
131
2
HOH
HOH
412
A
HOH
134
2
HOH
HOH
413
A
HOH
135
2
HOH
HOH
414
A
HOH
136
2
HOH
HOH
415
A
HOH
137
2
HOH
HOH
416
A
HOH
138
2
HOH
HOH
417
A
HOH
139
2
HOH
HOH
418
A
HOH
140
2
HOH
HOH
419
A
HOH
142
2
HOH
HOH
420
A
HOH
144
2
HOH
HOH
421
A
HOH
145
2
HOH
HOH
422
A
HOH
146
2
HOH
HOH
423
A
HOH
147
2
HOH
HOH
424
A
HOH
148
2
HOH
HOH
425
A
HOH
149
2
HOH
HOH
426
A
HOH
150
2
HOH
HOH
427
A
HOH
151
2
HOH
HOH
428
A
HOH
152
2
HOH
HOH
429
A
HOH
155
2
HOH
HOH
430
A
HOH
156
2
HOH
HOH
431
A
HOH
157
2
HOH
HOH
432
A
HOH
158
2
HOH
HOH
433
A
HOH
159
2
HOH
HOH
434
A
HOH
161
2
HOH
HOH
435
A
HOH
162
2
HOH
HOH
436
A
HOH
164
2
HOH
HOH
437
A
HOH
165
2
HOH
HOH
438
A
HOH
166
2
HOH
HOH
439
A
HOH
168
2
HOH
HOH
440
A
HOH
169
2
HOH
HOH
441
A
HOH
170
2
HOH
HOH
442
A
HOH
171
2
HOH
HOH
443
A
HOH
172
2
HOH
HOH
444
A
HOH
173
2
HOH
HOH
445
A
HOH
174
2
HOH
HOH
446
A
HOH
176
2
HOH
HOH
447
A
HOH
177
2
HOH
HOH
448
A
HOH
179
2
HOH
HOH
449
A
HOH
182
2
HOH
HOH
450
A
HOH
184
2
HOH
HOH
451
A
HOH
185
2
HOH
HOH
452
A
HOH
186
2
HOH
HOH
453
A
HOH
187
2
HOH
HOH
454
A
GLY
-1
n
1
GLY
-1
A
HIS
0
n
2
HIS
0
A
MET
1
n
3
MET
1
A
TYR
2
n
4
TYR
2
A
ARG
3
n
5
ARG
3
A
SER
4
n
6
SER
4
A
ARG
5
n
7
ARG
5
A
ASP
6
n
8
ASP
6
A
PHE
7
n
9
PHE
7
A
TYR
8
n
10
TYR
8
A
VAL
9
n
11
VAL
9
A
ARG
10
n
12
ARG
10
A
VAL
11
n
13
VAL
11
A
SER
12
n
14
SER
12
A
GLY
13
n
15
GLY
13
A
GLN
14
n
16
GLN
14
A
ARG
15
n
17
ARG
15
A
ALA
16
n
18
ALA
16
A
LEU
17
n
19
LEU
17
A
PHE
18
n
20
PHE
18
A
THR
19
n
21
THR
19
A
ASN
20
n
22
ASN
20
A
PRO
21
n
23
PRO
21
A
ALA
22
n
24
ALA
22
A
n
25
23
A
n
26
24
A
n
27
25
A
n
28
26
A
n
29
27
A
n
30
28
A
ARG
29
n
31
ARG
29
A
SER
30
n
32
SER
30
A
SER
31
n
33
SER
31
A
TYR
32
n
34
TYR
32
A
SER
33
n
35
SER
33
A
VAL
34
n
36
VAL
34
A
PRO
35
n
37
PRO
35
A
THR
36
n
38
THR
36
A
ARG
37
n
39
ARG
37
A
GLN
38
n
40
GLN
38
A
ALA
39
n
41
ALA
39
A
LEU
40
n
42
LEU
40
A
ASN
41
n
43
ASN
41
A
GLY
42
n
44
GLY
42
A
ILE
43
n
45
ILE
43
A
VAL
44
n
46
VAL
44
A
ASP
45
n
47
ASP
45
A
ALA
46
n
48
ALA
46
A
ILE
47
n
49
ILE
47
A
TYR
48
n
50
TYR
48
A
TYR
49
n
51
TYR
49
A
LYS
50
n
52
LYS
50
A
PRO
51
n
53
PRO
51
A
THR
52
n
54
THR
52
A
PHE
53
n
55
PHE
53
A
THR
54
n
56
THR
54
A
ASN
55
n
57
ASN
55
A
ILE
56
n
58
ILE
56
A
VAL
57
n
59
VAL
57
A
THR
58
n
60
THR
58
A
GLU
59
n
61
GLU
59
A
VAL
60
n
62
VAL
60
A
LYS
61
n
63
LYS
61
A
VAL
62
n
64
VAL
62
A
ILE
63
n
65
ILE
63
A
ASN
64
n
66
ASN
64
A
GLN
65
n
67
GLN
65
A
ILE
66
n
68
ILE
66
A
GLN
67
n
69
GLN
67
A
THR
68
n
70
THR
68
A
GLU
69
n
71
GLU
69
A
LEU
70
n
72
LEU
70
A
GLN
71
n
73
GLN
71
A
GLY
72
n
74
GLY
72
A
VAL
73
n
75
VAL
73
A
ARG
74
n
76
ARG
74
A
n
77
75
A
n
78
76
A
n
79
77
A
n
80
78
A
n
81
79
A
n
82
80
A
n
83
81
A
n
84
82
A
n
85
83
A
n
86
84
A
SER
85
n
87
SER
85
A
TYR
86
n
88
TYR
86
A
VAL
87
n
89
VAL
87
A
SER
88
n
90
SER
88
A
TYR
89
n
91
TYR
89
A
LEU
90
n
92
LEU
90
A
SER
91
n
93
SER
91
A
ASP
92
n
94
ASP
92
A
VAL
93
n
95
VAL
93
A
VAL
94
n
96
VAL
94
A
TYR
95
n
97
TYR
95
A
LEU
96
n
98
LEU
96
A
ILE
97
n
99
ILE
97
A
LYS
98
n
100
LYS
98
A
PHE
99
n
101
PHE
99
A
HIS
100
n
102
HIS
100
A
PHE
101
n
103
PHE
101
A
VAL
102
n
104
VAL
102
A
TRP
103
n
105
TRP
103
A
ASN
104
n
106
ASN
104
A
GLU
105
n
107
GLU
105
A
ASP
106
n
108
ASP
106
A
ARG
107
n
109
ARG
107
A
LYS
108
n
110
LYS
108
A
ASP
109
n
111
ASP
109
A
LEU
110
n
112
LEU
110
A
ASN
111
n
113
ASN
111
A
SER
112
n
114
SER
112
A
ASP
113
n
115
ASP
113
A
ARG
114
n
116
ARG
114
A
LEU
115
n
117
LEU
115
A
PRO
116
n
118
PRO
116
A
ALA
117
n
119
ALA
117
A
LYS
118
n
120
LYS
118
A
HIS
119
n
121
HIS
119
A
GLU
120
n
122
GLU
120
A
ALA
121
n
123
ALA
121
A
ILE
122
n
124
ILE
122
A
MET
123
n
125
MET
123
A
GLU
124
n
126
GLU
124
A
ARG
125
n
127
ARG
125
A
SER
126
n
128
SER
126
A
ILE
127
n
129
ILE
127
A
ARG
128
n
130
ARG
128
A
LYS
129
n
131
LYS
129
A
GLY
130
n
132
GLY
130
A
GLY
131
n
133
GLY
131
A
ARG
132
n
134
ARG
132
A
ARG
133
n
135
ARG
133
A
ASP
134
n
136
ASP
134
A
VAL
135
n
137
VAL
135
A
PHE
136
n
138
PHE
136
A
LEU
137
n
139
LEU
137
A
GLY
138
n
140
GLY
138
A
THR
139
n
141
THR
139
A
ARG
140
n
142
ARG
140
A
GLU
141
n
143
GLU
141
A
CYS
142
n
144
CYS
142
A
LEU
143
n
145
LEU
143
A
GLY
144
n
146
GLY
144
A
LEU
145
n
147
LEU
145
A
VAL
146
n
148
VAL
146
A
ASP
147
n
149
ASP
147
A
ASP
148
n
150
ASP
148
A
ILE
149
n
151
ILE
149
A
SER
150
n
152
SER
150
A
GLN
151
n
153
GLN
151
A
GLU
152
n
154
GLU
152
A
GLU
153
n
155
GLU
153
A
TYR
154
n
156
TYR
154
A
GLU
155
n
157
GLU
155
A
THR
156
n
158
THR
156
A
THR
157
n
159
THR
157
A
VAL
158
n
160
VAL
158
A
SER
159
n
161
SER
159
A
TYR
160
n
162
TYR
160
A
TYR
161
n
163
TYR
161
A
ASN
162
n
164
ASN
162
A
GLY
163
n
165
GLY
163
A
VAL
164
n
166
VAL
164
A
ASN
165
n
167
ASN
165
A
ILE
166
n
168
ILE
166
A
ASP
167
n
169
ASP
167
A
LEU
168
n
170
LEU
168
A
GLY
169
n
171
GLY
169
A
ILE
170
n
172
ILE
170
A
MET
171
n
173
MET
171
A
PHE
172
n
174
PHE
172
A
HIS
173
n
175
HIS
173
A
SER
174
n
176
SER
174
A
PHE
175
n
177
PHE
175
A
ALA
176
n
178
ALA
176
A
TYR
177
n
179
TYR
177
A
PRO
178
n
180
PRO
178
A
n
181
179
A
n
182
180
A
n
183
181
A
n
184
182
A
THR
183
n
185
THR
183
A
PRO
184
n
186
PRO
184
A
LEU
185
n
187
LEU
185
A
LYS
186
n
188
LYS
186
A
SER
187
n
189
SER
187
A
TYR
188
n
190
TYR
188
A
PHE
189
n
191
PHE
189
A
THR
190
n
192
THR
190
A
LYS
191
n
193
LYS
191
A
THR
192
n
194
THR
192
A
VAL
193
n
195
VAL
193
A
MET
194
n
196
MET
194
A
LYS
195
n
197
LYS
195
A
ASN
196
n
198
ASN
196
A
GLY
197
n
199
GLY
197
A
VAL
198
n
200
VAL
198
A
ILE
199
n
201
ILE
199
A
THR
200
n
202
THR
200
A
PHE
201
n
203
PHE
201
A
LYS
202
n
204
LYS
202
A
ALA
203
n
205
ALA
203
A
GLN
204
n
206
GLN
204
A
SER
205
n
207
SER
205
A
GLU
206
n
208
GLU
206
A
CYS
207
n
209
CYS
207
A
ASP
208
n
210
ASP
208
A
ILE
209
n
211
ILE
209
A
VAL
210
n
212
VAL
210
A
ASN
211
n
213
ASN
211
A
THR
212
n
214
THR
212
A
n
215
213
A
n
216
214
A
n
217
215
A
n
218
216
A
n
219
217
A
n
220
218
A
n
221
219
A
n
222
220
A
n
223
221
A
n
224
222
A
n
225
223
A
n
226
224
A
n
227
225
A
n
228
226
A
n
229
227
A
n
230
228
A
n
231
229
A
n
232
230
A
n
233
231
A
n
234
232
A
n
235
233
A
n
236
234
A
n
237
235
A
n
238
236
A
n
239
237
A
n
240
238
A
n
241
239
A
n
242
240
A
n
243
241
A
n
244
242
A
0.7885
0.0475
0.0606
0.6493
-0.0002
0.9241
-0.0024
-0.0252
0.0184
-0.0232
0.0205
-0.0395
0.0649
-0.0875
-0.0181
0.0615
0.0054
0.0075
0.0167
0.0046
0.0519
refined
-21.1530
21.8386
-1.4548
X-RAY DIFFRACTION
0.8230
-0.6887
-0.3475
2.1940
-0.0549
1.4169
0.0262
0.1121
-0.0504
-0.0088
-0.0296
0.0773
0.1630
-0.1632
0.0034
0.0509
-0.0170
0.0092
0.0717
-0.0197
0.0936
refined
-9.4757
17.0390
-10.2634
X-RAY DIFFRACTION
A
-1
A
161
X-RAY DIFFRACTION
1
A
162
A
212
X-RAY DIFFRACTION
2
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1800
-9
19800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
69
A
N
GLU
71
A
O
TYR
89
A
O
TYR
91
A
O
TYR
95
A
O
TYR
97
A
N
VAL
11
A
N
VAL
13
A
N
ARG
10
A
N
ARG
12
A
O
ASP
147
A
O
ASP
149
A
N
GLU
69
A
N
GLU
71
A
O
TYR
89
A
O
TYR
91
A
O
HIS
100
A
O
HIS
102
A
N
ILE
56
A
N
ILE
58
A
N
VAL
60
A
N
VAL
62
A
O
ILE
199
A
O
ILE
201
A
N
HIS
173
A
N
HIS
175
A
O
TYR
188
A
O
TYR
190
A
N
SER
187
A
N
SER
189
A
O
ASN
211
A
O
ASN
213
1
A
THR
23
A
THR
25
1
Y
1
A
LYS
24
A
LYS
26
1
Y
1
A
GLY
25
A
GLY
27
1
Y
1
A
GLY
26
A
GLY
28
1
Y
1
A
SER
27
A
SER
29
1
Y
1
A
GLU
28
A
GLU
30
1
Y
1
A
ALA
75
A
ALA
77
1
Y
1
A
LEU
76
A
LEU
78
1
Y
1
A
LEU
77
A
LEU
79
1
Y
1
A
HIS
78
A
HIS
80
1
Y
1
A
ASP
79
A
ASP
81
1
Y
1
A
TYR
80
A
TYR
82
1
Y
1
A
SER
81
A
SER
83
1
Y
1
A
ALA
82
A
ALA
84
1
Y
1
A
ASP
83
A
ASP
85
1
Y
1
A
LEU
84
A
LEU
86
1
Y
1
A
LYS
179
A
LYS
181
1
Y
1
A
ASP
180
A
ASP
182
1
Y
1
A
LYS
181
A
LYS
183
1
Y
1
A
LYS
182
A
LYS
184
1
Y
1
A
LEU
213
A
LEU
215
1
Y
1
A
SER
214
A
SER
216
1
Y
1
A
SER
215
A
SER
217
1
Y
1
A
TYR
216
A
TYR
218
1
Y
1
A
ALA
217
A
ALA
219
1
Y
1
A
PHE
218
A
PHE
220
1
Y
1
A
LYS
219
A
LYS
221
1
Y
1
A
ALA
220
A
ALA
222
1
Y
1
A
PRO
221
A
PRO
223
1
Y
1
A
GLU
222
A
GLU
224
1
Y
1
A
GLU
223
A
GLU
225
1
Y
1
A
ILE
224
A
ILE
226
1
Y
1
A
LYS
225
A
LYS
227
1
Y
1
A
SER
226
A
SER
228
1
Y
1
A
VAL
227
A
VAL
229
1
Y
1
A
ASN
228
A
ASN
230
1
Y
1
A
ASP
229
A
ASP
231
1
Y
1
A
GLU
230
A
GLU
232
1
Y
1
A
CYS
231
A
CYS
233
1
Y
1
A
MET
232
A
MET
234
1
Y
1
A
GLU
233
A
GLU
235
1
Y
1
A
TYR
234
A
TYR
236
1
Y
1
A
ASP
235
A
ASP
237
1
Y
1
A
ALA
236
A
ALA
238
1
Y
1
A
MET
237
A
MET
239
1
Y
1
A
GLU
238
A
GLU
240
1
Y
1
A
LYS
239
A
LYS
241
1
Y
1
A
GLY
240
A
GLY
242
1
Y
1
A
GLU
241
A
GLU
243
1
Y
1
A
ASN
242
A
ASN
244
1
Y
1
-3.07
0.50
120.30
117.23
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
133
133
133
N
1
A
A
CG
CD2
HIS
HIS
0
0
0.055
0.009
1.354
1.409
N
1
A
A
CG
CD2
HIS
HIS
100
100
0.085
0.009
1.354
1.439
N
1
A
A
CG
CD2
TYR
TYR
161
161
0.087
0.013
1.387
1.474
N
1
A
A
CG
CD2
HIS
HIS
173
173
0.056
0.009
1.354
1.410
N
1
A
GLN
65
-33.84
133.26
1
A
LEU
137
-102.23
76.22
1
A
HIS
173
-103.88
-65.62
32.212
-2.00
-0.00
0.06
3.39
0.00
-1.39
0.963
0.935
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.22613
0.18302
0.18522
1.70
50.00
1076
19912
5.1
96.24
4.938
0.081
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.117
0.117
0.80
0.80
1.20
3KG4
MAXIMUM LIKELIHOOD
MASK
1.70
50.00
154
1730
0
0
1576
0.021
0.020
1607
1.942
1.944
2170
7.324
5.000
190
31.045
23.000
80
14.665
15.000
277
13.435
15.000
14
0.155
0.200
241
0.012
0.021
1214
0.279
0.261
1.747
88
1349
20
92.53
1.70
50.00
3VZH
20990
1
96.5
1.70
1.76
1
95.2
data collection
HKL-2000
phasing
PHASER
refinement
REFMAC
5.6.0117
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure of CRISPR-associated Protein
1
N
N
2
N
N
A
THR
36
A
THR
38
HELX_P
A
TYR
48
A
TYR
50
1
1
13
A
ARG
107
A
ARG
109
HELX_P
A
ARG
114
A
ARG
116
5
2
8
A
LEU
115
A
LEU
117
HELX_P
A
LYS
129
A
LYS
131
1
3
15
A
SER
150
A
SER
152
HELX_P
A
THR
157
A
THR
159
1
4
8
A
ALA
203
A
ALA
205
HELX_P
A
CYS
207
A
CYS
209
5
5
5
DNA BINDING PROTEIN
RRM, ribonuclease, nucleic acid, DNA BINDING PROTEIN
Q99YS3_STRP1
UNP
1
1
Q99YS3
MYRSRDFYVRVSGQRALFTNPATKGGSERSSYSVPTRQALNGIVDAIYYKPTFTNIVTEVKVINQIQTELQGVRALLHDY
SADLSYVSYLSDVVYLIKFHFVWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRECLGLVDDISQEEYETTVSY
YNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMKNGVITFKAQSECDIVNTLSSYAFKAPEEIKSVNDECMEYDAMEKG
EN
1
242
3VZH
1
242
Q99YS3
A
1
3
244
1
expression tag
GLY
-1
3VZH
A
Q99YS3
UNP
1
1
expression tag
HIS
0
3VZH
A
Q99YS3
UNP
2
4
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
68
A
THR
70
A
GLY
72
A
GLY
74
A
TYR
86
A
TYR
88
A
TRP
103
A
TRP
105
A
PHE
7
A
PHE
9
A
ALA
16
A
ALA
18
A
LEU
145
A
LEU
147
A
ASP
148
A
ASP
150
A
THR
68
A
THR
70
A
GLY
72
A
GLY
74
A
TYR
86
A
TYR
88
A
TRP
103
A
TRP
105
A
PHE
53
A
PHE
55
A
VAL
62
A
VAL
64
A
VAL
198
A
VAL
200
A
THR
200
A
THR
202
A
ASN
165
A
ASN
167
A
ALA
176
A
ALA
178
A
LYS
186
A
LYS
188
A
LYS
195
A
LYS
197
A
ILE
209
A
ILE
211
A
ASN
211
A
ASN
213
5
C 1 2 1