0.017209
0.000000
0.000000
0.000000
0.015097
0.000000
0.000000
0.000000
0.012387
0.00000
0.00000
0.00000
Shimizu, H.
Katakura, S.
Miyazaki, M.
Naito, H.
Sugimoto, Y.
Kawato, H.
Okayama, T.
Soga, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.255
66.076
80.419
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C29 H32 Cl2 N4 O2 S
571.561
1-{[(5R,6S)-5,6-bis(4-chlorophenyl)-6-methyl-3-(propan-2-yl)-5,6-dihydroimidazo[2,1-b][1,3]thiazol-2-yl]carbonyl}-N,N-dimethyl-L-prolinamide
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
N
329
N
O
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
O
N
362
N
C
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
N
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
N
N
379
R
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
CL
N
387
N
S
N
388
N
C
N
389
N
N
N
390
S
C
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
N
398
N
CL
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
Y
377
N
doub
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
Y
381
N
doub
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
doub
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
23
728
732
10.1016/j.bmcl.2012.11.091
23266121
Lead optimization of novel p53-MDM2 interaction inhibitors possessing dihydroimidazothiazole scaffold
2013
10.2210/pdb3vzv/pdb
pdb_00003vzv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
confocal mirrors
IMAGE PLATE
2005-11-20
RIGAKU RAXIS VII
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.54178
1.0
1.54178
ROTATING ANODE
RIGAKU MICROMAX-007 HF
10204.974
E3 ubiquitin-protein ligase Mdm2
6.3.2.-
SWIB domain, UNP residues 25-109
L33E
2
man
polymer
571.561
1-{[(5R,6S)-5,6-bis(4-chlorophenyl)-6-methyl-3-(propan-2-yl)-5,6-dihydroimidazo[2,1-b][1,3]thiazol-2-yl]carbonyl}-N,N-dimethyl-L-prolinamide
2
syn
non-polymer
Double minute 2 protein, Hdm2, Oncoprotein Mdm2, p53-binding protein Mdm2
no
no
GSETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTM
IYRNLVV
GSETLVRPKPELLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTM
IYRNLVV
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MDM2
9606
Homo sapiens
562
Escherichia coli
BL21
plasmid
pGEX4T3
1
3.79
67.56
VAPOR DIFFUSION, SITTING DROP
8.1
2.4M Ammonium sulfate, 5% PEG 200, 0.1M Tris HCl, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2013-02-06
1
1
2024-03-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2012-10-16
REL
REL
VZV
1-{[(5R,6S)-5,6-bis(4-chlorophenyl)-6-methyl-3-(propan-2-yl)-5,6-dihydroimidazo[2,1-b][1,3]thiazol-2-yl]carbonyl}-N,N-dimethyl-L-prolinamide
LIG
200
2
VZV
VZV
200
A
LIG
201
2
VZV
VZV
201
B
n
1
23
A
n
2
24
A
GLU
25
n
3
GLU
25
A
THR
26
n
4
THR
26
A
LEU
27
n
5
LEU
27
A
VAL
28
n
6
VAL
28
A
ARG
29
n
7
ARG
29
A
PRO
30
n
8
PRO
30
A
LYS
31
n
9
LYS
31
A
PRO
32
n
10
PRO
32
A
GLU
33
n
11
GLU
33
A
LEU
34
n
12
LEU
34
A
LEU
35
n
13
LEU
35
A
LYS
36
n
14
LYS
36
A
LEU
37
n
15
LEU
37
A
LEU
38
n
16
LEU
38
A
LYS
39
n
17
LYS
39
A
SER
40
n
18
SER
40
A
VAL
41
n
19
VAL
41
A
GLY
42
n
20
GLY
42
A
ALA
43
n
21
ALA
43
A
GLN
44
n
22
GLN
44
A
LYS
45
n
23
LYS
45
A
ASP
46
n
24
ASP
46
A
THR
47
n
25
THR
47
A
TYR
48
n
26
TYR
48
A
THR
49
n
27
THR
49
A
MET
50
n
28
MET
50
A
LYS
51
n
29
LYS
51
A
GLU
52
n
30
GLU
52
A
VAL
53
n
31
VAL
53
A
LEU
54
n
32
LEU
54
A
PHE
55
n
33
PHE
55
A
TYR
56
n
34
TYR
56
A
LEU
57
n
35
LEU
57
A
GLY
58
n
36
GLY
58
A
GLN
59
n
37
GLN
59
A
TYR
60
n
38
TYR
60
A
ILE
61
n
39
ILE
61
A
MET
62
n
40
MET
62
A
THR
63
n
41
THR
63
A
LYS
64
n
42
LYS
64
A
ARG
65
n
43
ARG
65
A
LEU
66
n
44
LEU
66
A
TYR
67
n
45
TYR
67
A
ASP
68
n
46
ASP
68
A
GLU
69
n
47
GLU
69
A
LYS
70
n
48
LYS
70
A
GLN
71
n
49
GLN
71
A
GLN
72
n
50
GLN
72
A
HIS
73
n
51
HIS
73
A
ILE
74
n
52
ILE
74
A
VAL
75
n
53
VAL
75
A
TYR
76
n
54
TYR
76
A
CYS
77
n
55
CYS
77
A
SER
78
n
56
SER
78
A
ASN
79
n
57
ASN
79
A
ASP
80
n
58
ASP
80
A
LEU
81
n
59
LEU
81
A
LEU
82
n
60
LEU
82
A
GLY
83
n
61
GLY
83
A
ASP
84
n
62
ASP
84
A
LEU
85
n
63
LEU
85
A
PHE
86
n
64
PHE
86
A
GLY
87
n
65
GLY
87
A
VAL
88
n
66
VAL
88
A
PRO
89
n
67
PRO
89
A
SER
90
n
68
SER
90
A
PHE
91
n
69
PHE
91
A
SER
92
n
70
SER
92
A
VAL
93
n
71
VAL
93
A
LYS
94
n
72
LYS
94
A
GLU
95
n
73
GLU
95
A
HIS
96
n
74
HIS
96
A
ARG
97
n
75
ARG
97
A
LYS
98
n
76
LYS
98
A
ILE
99
n
77
ILE
99
A
TYR
100
n
78
TYR
100
A
THR
101
n
79
THR
101
A
MET
102
n
80
MET
102
A
ILE
103
n
81
ILE
103
A
TYR
104
n
82
TYR
104
A
ARG
105
n
83
ARG
105
A
ASN
106
n
84
ASN
106
A
LEU
107
n
85
LEU
107
A
VAL
108
n
86
VAL
108
A
VAL
109
n
87
VAL
109
A
n
1
23
B
n
2
24
B
GLU
25
n
3
GLU
25
B
THR
26
n
4
THR
26
B
LEU
27
n
5
LEU
27
B
VAL
28
n
6
VAL
28
B
ARG
29
n
7
ARG
29
B
PRO
30
n
8
PRO
30
B
LYS
31
n
9
LYS
31
B
PRO
32
n
10
PRO
32
B
GLU
33
n
11
GLU
33
B
LEU
34
n
12
LEU
34
B
LEU
35
n
13
LEU
35
B
LYS
36
n
14
LYS
36
B
LEU
37
n
15
LEU
37
B
LEU
38
n
16
LEU
38
B
LYS
39
n
17
LYS
39
B
SER
40
n
18
SER
40
B
VAL
41
n
19
VAL
41
B
GLY
42
n
20
GLY
42
B
ALA
43
n
21
ALA
43
B
GLN
44
n
22
GLN
44
B
LYS
45
n
23
LYS
45
B
ASP
46
n
24
ASP
46
B
THR
47
n
25
THR
47
B
TYR
48
n
26
TYR
48
B
THR
49
n
27
THR
49
B
MET
50
n
28
MET
50
B
LYS
51
n
29
LYS
51
B
GLU
52
n
30
GLU
52
B
VAL
53
n
31
VAL
53
B
LEU
54
n
32
LEU
54
B
PHE
55
n
33
PHE
55
B
TYR
56
n
34
TYR
56
B
LEU
57
n
35
LEU
57
B
GLY
58
n
36
GLY
58
B
GLN
59
n
37
GLN
59
B
TYR
60
n
38
TYR
60
B
ILE
61
n
39
ILE
61
B
MET
62
n
40
MET
62
B
THR
63
n
41
THR
63
B
LYS
64
n
42
LYS
64
B
ARG
65
n
43
ARG
65
B
LEU
66
n
44
LEU
66
B
TYR
67
n
45
TYR
67
B
ASP
68
n
46
ASP
68
B
GLU
69
n
47
GLU
69
B
LYS
70
n
48
LYS
70
B
GLN
71
n
49
GLN
71
B
GLN
72
n
50
GLN
72
B
HIS
73
n
51
HIS
73
B
ILE
74
n
52
ILE
74
B
VAL
75
n
53
VAL
75
B
TYR
76
n
54
TYR
76
B
CYS
77
n
55
CYS
77
B
SER
78
n
56
SER
78
B
ASN
79
n
57
ASN
79
B
ASP
80
n
58
ASP
80
B
LEU
81
n
59
LEU
81
B
LEU
82
n
60
LEU
82
B
GLY
83
n
61
GLY
83
B
ASP
84
n
62
ASP
84
B
LEU
85
n
63
LEU
85
B
PHE
86
n
64
PHE
86
B
GLY
87
n
65
GLY
87
B
VAL
88
n
66
VAL
88
B
PRO
89
n
67
PRO
89
B
SER
90
n
68
SER
90
B
PHE
91
n
69
PHE
91
B
SER
92
n
70
SER
92
B
VAL
93
n
71
VAL
93
B
LYS
94
n
72
LYS
94
B
GLU
95
n
73
GLU
95
B
HIS
96
n
74
HIS
96
B
ARG
97
n
75
ARG
97
B
LYS
98
n
76
LYS
98
B
ILE
99
n
77
ILE
99
B
TYR
100
n
78
TYR
100
B
THR
101
n
79
THR
101
B
MET
102
n
80
MET
102
B
ILE
103
n
81
ILE
103
B
TYR
104
n
82
TYR
104
B
ARG
105
n
83
ARG
105
B
ASN
106
n
84
ASN
106
B
LEU
107
n
85
LEU
107
B
VAL
108
n
86
VAL
108
B
VAL
109
n
87
VAL
109
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
29
A
N
ARG
7
A
O
VAL
108
A
O
VAL
86
A
N
VAL
75
A
N
VAL
53
A
O
PHE
91
A
O
PHE
69
B
O
TYR
48
B
O
TYR
26
B
N
VAL
28
B
N
VAL
6
B
N
ARG
29
B
N
ARG
7
B
O
VAL
108
B
O
VAL
86
B
N
VAL
75
B
N
VAL
53
B
O
PHE
91
B
O
PHE
69
1
A
GLY
23
A
GLY
1
1
Y
1
A
SER
24
A
SER
2
1
Y
1
B
GLY
23
B
GLY
1
1
Y
1
B
SER
24
B
SER
2
1
Y
1
A
A
OG1
OE1
THR
GLU
49
52
2.09
1
-9.76
1.50
119.30
109.54
B
B
B
C
N
CA
LYS
PRO
PRO
31
32
32
Y
1
A
LYS
45
-102.45
-159.75
1
A
ASP
46
-156.47
1.56
1
A
LEU
57
-39.95
-27.74
1
A
LEU
66
-68.53
39.40
1
B
LYS
31
-44.47
177.29
1
B
SER
40
-51.35
-4.85
1
B
LYS
51
-28.95
-53.52
1
B
ARG
65
39.33
66.86
1
B
TYR
67
-87.75
-155.26
1
B
GLN
72
-89.94
30.30
1
B
ASN
79
-117.13
76.65
1
B
ASP
80
-174.95
143.22
1
B
PHE
91
175.20
172.35
1
B
VAL
93
-55.01
-7.06
1
B
HIS
96
3.72
-57.79
28.216
0.44
0.00
0.00
0.47
0.00
-0.91
0.864
0.821
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.28440
0.24784
0.24965
2.80
30.56
387
7342
5.0
95.81
13.002
0.255
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.743
0.370
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.80
30.56
0
1490
76
0
1414
0.017
0.020
1526
2.248
2.060
2070
8.533
5.000
168
42.061
23.548
62
21.589
15.000
286
25.047
15.000
8
0.151
0.200
234
0.013
0.021
1110
0.315
0.331
2.872
16
396
20
76.72
2.8
50
3VZV
7899
0
0
0.039
1
38.3
6.2
97.5
0.435
2.80
2.85
3.4
409
1
6.8
100
data collection
HKL-2000
phasing
MOLREP
refinement
REFMAC
5.6.0117
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of human mdm2 with a dihydroimidazothiazole inhibitor
1
N
N
1
N
N
2
N
N
2
N
N
A
LYS
31
A
LYS
9
HELX_P
A
SER
40
A
SER
18
1
1
10
A
THR
49
A
THR
27
HELX_P
A
LYS
64
A
LYS
42
1
2
16
A
ASP
80
A
ASP
58
HELX_P
A
GLY
87
A
GLY
65
1
3
8
A
GLU
95
A
GLU
73
HELX_P
A
ARG
105
A
ARG
83
1
4
11
B
LYS
31
B
LYS
9
HELX_P
B
SER
40
B
SER
18
1
5
10
B
MET
50
B
MET
28
HELX_P
B
LYS
64
B
LYS
42
1
6
15
B
ASP
80
B
ASP
58
HELX_P
B
PHE
86
B
PHE
64
1
7
7
B
GLU
95
B
GLU
73
HELX_P
B
ARG
105
B
ARG
83
1
8
11
LIGASE/LIGASE INHIBITOR
Ubiquitin-protein ligase E3 Mdm2, p53, LIGASE-LIGASE INHIBITOR complex
MDM2_HUMAN
UNP
1
25
Q00987
ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY
RNLVV
25
109
3VZV
25
109
Q00987
A
1
3
87
25
109
3VZV
25
109
Q00987
B
1
3
87
1
expression tag
GLY
23
3VZV
A
Q00987
UNP
1
1
expression tag
SER
24
3VZV
A
Q00987
UNP
2
1
LEU
engineered mutation
GLU
33
3VZV
A
Q00987
UNP
33
11
2
expression tag
GLY
23
3VZV
B
Q00987
UNP
1
2
expression tag
SER
24
3VZV
B
Q00987
UNP
2
2
LEU
engineered mutation
GLU
33
3VZV
B
Q00987
UNP
33
11
2
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
29
A
ARG
7
A
PRO
30
A
PRO
8
A
LEU
107
A
LEU
85
A
VAL
108
A
VAL
86
A
ILE
74
A
ILE
52
A
TYR
76
A
TYR
54
A
SER
90
A
SER
68
A
SER
92
A
SER
70
B
TYR
48
B
TYR
26
B
THR
49
B
THR
27
B
LEU
27
B
LEU
5
B
PRO
30
B
PRO
8
B
LEU
107
B
LEU
85
B
VAL
108
B
VAL
86
B
ILE
74
B
ILE
52
B
TYR
76
B
TYR
54
B
SER
90
B
SER
68
B
SER
92
B
SER
70
BINDING SITE FOR RESIDUE VZV A 200
A
VZV
200
Software
9
BINDING SITE FOR RESIDUE VZV B 201
B
VZV
201
Software
9
A
LEU
54
A
LEU
32
9
1_555
A
GLY
58
A
GLY
36
9
1_555
A
MET
62
A
MET
40
9
1_555
A
TYR
67
A
TYR
45
9
1_555
A
GLN
72
A
GLN
50
9
1_555
A
VAL
93
A
VAL
71
9
1_555
A
HIS
96
A
HIS
74
9
1_555
A
TYR
100
A
TYR
78
9
1_555
B
TYR
104
B
TYR
82
9
2_554
A
THR
26
A
THR
4
9
1_555
A
TYR
100
A
TYR
78
9
1_555
A
TYR
104
A
TYR
82
9
1_555
B
LEU
54
B
LEU
32
9
1_555
B
MET
62
B
MET
40
9
1_555
B
GLN
72
B
GLN
50
9
1_555
B
VAL
93
B
VAL
71
9
1_555
B
HIS
96
B
HIS
74
9
1_555
B
ILE
99
B
ILE
77
9
1_555
19
P 21 21 21