0.008387 0.004842 0.000000 0.000000 0.009684 0.000000 0.000000 0.000000 0.014289 0.00000 0.00000 0.00000 Nishide, A. Kim, M. Takagi, K. Sasakawa, C. Mizushima, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 119.238 119.238 69.985 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N I N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N C N 211 N N N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 S C N 230 N C N 231 N O N 232 N C N 233 N C N 234 N S N 235 N C N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N C N 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N O N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 R C N 307 N O N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N N Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N C N 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing UK J.Mol.Biol. JMOBAK 0070 1089-8638 425 2623 2631 10.1016/j.jmb.2013.02.037 23542009 Structural basis for the recognition of Ubc13 by the Shigella flexneri effector OspI. 2013 10.2210/pdb3w31/pdb pdb_00003w31 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 2011-12-14 SINGLE WAVELENGTH M x-ray 1 0.9 1.0 BL44XU SPring-8 0.9 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 24118.807 ORF169b C62A 1 man polymer 17440.049 Ubiquitin-conjugating enzyme E2 N 6.3.2.19 1 man polymer 126.904 IODIDE ION 4 syn non-polymer Bendless-like ubiquitin-conjugating enzyme, Ubc13, UbcH13, Ubiquitin carrier protein N, Ubiquitin-protein ligase N no no GPLGSPEFMINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNASGCALHACMA MLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFND GEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC GPLGSPEFMINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNASGCALHACMA MLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFND GEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC A polypeptide(L) no no GSHMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYH PNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI GSHMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYH PNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample ORF169b, CP0209 623 Shigella flexneri 562 Escherichia coli human sample UBE2N, BLU 9606 Homo sapiens 562 Escherichia coli 3.40 63.81 VAPOR DIFFUSION, HANGING DROP 6.5 0.4M potassium iodide, 0.1M MES (pH6.5), 4mM DTT, 15% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 citation database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Database references Database references Derived calculations Data collection Refinement description 1 0 2013-03-27 1 1 2013-07-17 1 2 2022-08-24 1 3 2023-11-08 _citation.journal_volume _citation.page_first _citation.page_last _citation.title _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2012-12-07 REL REL IOD IODIDE ION 3B21 3B21, 1JBB PDB experimental model 1JBB 3B21, 1JBB PDB experimental model I 2 3 IOD IOD 301 A I 1 3 IOD IOD 201 B I 3 3 IOD IOD 202 B I 4 3 IOD IOD 203 B n 1 -7 A n 2 -6 A n 3 -5 A n 4 -4 A n 5 -3 A n 6 -2 A n 7 -1 A n 8 0 A n 9 1 A n 10 2 A n 11 3 A n 12 4 A n 13 5 A n 14 6 A n 15 7 A n 16 8 A n 17 9 A n 18 10 A n 19 11 A n 20 12 A n 21 13 A n 22 14 A n 23 15 A n 24 16 A n 25 17 A n 26 18 A n 27 19 A n 28 20 A ASN 21 n 29 ASN 21 A VAL 22 n 30 VAL 22 A ASN 23 n 31 ASN 23 A VAL 24 n 32 VAL 24 A LYS 25 n 33 LYS 25 A LYS 26 n 34 LYS 26 A LEU 27 n 35 LEU 27 A LEU 28 n 36 LEU 28 A GLU 29 n 37 GLU 29 A SER 30 n 38 SER 30 A LEU 31 n 39 LEU 31 A ASN 32 n 40 ASN 32 A SER 33 n 41 SER 33 A LYS 34 n 42 LYS 34 A SER 35 n 43 SER 35 A LEU 36 n 44 LEU 36 A GLY 37 n 45 GLY 37 A ASP 38 n 46 ASP 38 A MET 39 n 47 MET 39 A ASP 40 n 48 ASP 40 A LYS 41 n 49 LYS 41 A ASP 42 n 50 ASP 42 A SER 43 n 51 SER 43 A GLU 44 n 52 GLU 44 A LEU 45 n 53 LEU 45 A ALA 46 n 54 ALA 46 A ALA 47 n 55 ALA 47 A THR 48 n 56 THR 48 A LEU 49 n 57 LEU 49 A GLN 50 n 58 GLN 50 A LYS 51 n 59 LYS 51 A MET 52 n 60 MET 52 A ILE 53 n 61 ILE 53 A ASN 54 n 62 ASN 54 A PRO 55 n 63 PRO 55 A SER 56 n 64 SER 56 A GLY 57 n 65 GLY 57 A GLY 58 n 66 GLY 58 A ASP 59 n 67 ASP 59 A GLY 60 n 68 GLY 60 A ASN 61 n 69 ASN 61 A ALA 62 n 70 ALA 62 A SER 63 n 71 SER 63 A GLY 64 n 72 GLY 64 A CYS 65 n 73 CYS 65 A ALA 66 n 74 ALA 66 A LEU 67 n 75 LEU 67 A HIS 68 n 76 HIS 68 A ALA 69 n 77 ALA 69 A CYS 70 n 78 CYS 70 A MET 71 n 79 MET 71 A ALA 72 n 80 ALA 72 A MET 73 n 81 MET 73 A LEU 74 n 82 LEU 74 A GLY 75 n 83 GLY 75 A TYR 76 n 84 TYR 76 A GLY 77 n 85 GLY 77 A VAL 78 n 86 VAL 78 A ARG 79 n 87 ARG 79 A GLU 80 n 88 GLU 80 A ALA 81 n 89 ALA 81 A PRO 82 n 90 PRO 82 A VAL 83 n 91 VAL 83 A PRO 84 n 92 PRO 84 A ASN 85 n 93 ASN 85 A GLU 86 n 94 GLU 86 A ILE 87 n 95 ILE 87 A SER 88 n 96 SER 88 A GLU 89 n 97 GLU 89 A TYR 90 n 98 TYR 90 A MET 91 n 99 MET 91 A THR 92 n 100 THR 92 A GLY 93 n 101 GLY 93 A PHE 94 n 102 PHE 94 A PHE 95 n 103 PHE 95 A HIS 96 n 104 HIS 96 A ARG 97 n 105 ARG 97 A HIS 98 n 106 HIS 98 A LEU 99 n 107 LEU 99 A GLU 100 n 108 GLU 100 A GLN 101 n 109 GLN 101 A ILE 102 n 110 ILE 102 A ASP 103 n 111 ASP 103 A SER 104 n 112 SER 104 A GLU 105 n 113 GLU 105 A GLY 106 n 114 GLY 106 A ILE 107 n 115 ILE 107 A VAL 108 n 116 VAL 108 A SER 109 n 117 SER 109 A HIS 110 n 118 HIS 110 A PRO 111 n 119 PRO 111 A ASN 112 n 120 ASN 112 A GLU 113 n 121 GLU 113 A THR 114 n 122 THR 114 A TYR 115 n 123 TYR 115 A SER 116 n 124 SER 116 A LYS 117 n 125 LYS 117 A PHE 118 n 126 PHE 118 A ARG 119 n 127 ARG 119 A GLU 120 n 128 GLU 120 A ARG 121 n 129 ARG 121 A ILE 122 n 130 ILE 122 A ALA 123 n 131 ALA 123 A GLU 124 n 132 GLU 124 A ASN 125 n 133 ASN 125 A ILE 126 n 134 ILE 126 A LEU 127 n 135 LEU 127 A GLN 128 n 136 GLN 128 A ASN 129 n 137 ASN 129 A THR 130 n 138 THR 130 A SER 131 n 139 SER 131 A LYS 132 n 140 LYS 132 A GLY 133 n 141 GLY 133 A SER 134 n 142 SER 134 A VAL 135 n 143 VAL 135 A VAL 136 n 144 VAL 136 A MET 137 n 145 MET 137 A ILE 138 n 146 ILE 138 A SER 139 n 147 SER 139 A ILE 140 n 148 ILE 140 A GLU 141 n 149 GLU 141 A GLN 142 n 150 GLN 142 A ALA 143 n 151 ALA 143 A THR 144 n 152 THR 144 A HIS 145 n 153 HIS 145 A TRP 146 n 154 TRP 146 A ILE 147 n 155 ILE 147 A ALA 148 n 156 ALA 148 A GLY 149 n 157 GLY 149 A PHE 150 n 158 PHE 150 A ASN 151 n 159 ASN 151 A ASP 152 n 160 ASP 152 A GLY 153 n 161 GLY 153 A GLU 154 n 162 GLU 154 A LYS 155 n 163 LYS 155 A ILE 156 n 164 ILE 156 A MET 157 n 165 MET 157 A PHE 158 n 166 PHE 158 A LEU 159 n 167 LEU 159 A ASP 160 n 168 ASP 160 A VAL 161 n 169 VAL 161 A GLN 162 n 170 GLN 162 A THR 163 n 171 THR 163 A GLY 164 n 172 GLY 164 A LYS 165 n 173 LYS 165 A GLY 166 n 174 GLY 166 A PHE 167 n 175 PHE 167 A ASN 168 n 176 ASN 168 A LEU 169 n 177 LEU 169 A TYR 170 n 178 TYR 170 A ASP 171 n 179 ASP 171 A PRO 172 n 180 PRO 172 A VAL 173 n 181 VAL 173 A GLU 174 n 182 GLU 174 A LYS 175 n 183 LYS 175 A SER 176 n 184 SER 176 A PRO 177 n 185 PRO 177 A ASP 178 n 186 ASP 178 A ALA 179 n 187 ALA 179 A PHE 180 n 188 PHE 180 A VAL 181 n 189 VAL 181 A ASP 182 n 190 ASP 182 A GLU 183 n 191 GLU 183 A ASN 184 n 192 ASN 184 A SER 185 n 193 SER 185 A SER 186 n 194 SER 186 A VAL 187 n 195 VAL 187 A GLN 188 n 196 GLN 188 A VAL 189 n 197 VAL 189 A ILE 190 n 198 ILE 190 A HIS 191 n 199 HIS 191 A VAL 192 n 200 VAL 192 A SER 193 n 201 SER 193 A ASP 194 n 202 ASP 194 A GLN 195 n 203 GLN 195 A GLU 196 n 204 GLU 196 A PHE 197 n 205 PHE 197 A ASP 198 n 206 ASP 198 A HIS 199 n 207 HIS 199 A TYR 200 n 208 TYR 200 A ALA 201 n 209 ALA 201 A ASN 202 n 210 ASN 202 A SER 203 n 211 SER 203 A SER 204 n 212 SER 204 A SER 205 n 213 SER 205 A TRP 206 n 214 TRP 206 A LYS 207 n 215 LYS 207 A SER 208 n 216 SER 208 A LYS 209 n 217 LYS 209 A ARG 210 n 218 ARG 210 A LEU 211 n 219 LEU 211 A CYS 212 n 220 CYS 212 A n 1 -2 B n 2 -1 B n 3 0 B MET 1 n 4 MET 1 B ALA 2 n 5 ALA 2 B GLY 3 n 6 GLY 3 B LEU 4 n 7 LEU 4 B PRO 5 n 8 PRO 5 B ARG 6 n 9 ARG 6 B ARG 7 n 10 ARG 7 B ILE 8 n 11 ILE 8 B ILE 9 n 12 ILE 9 B LYS 10 n 13 LYS 10 B GLU 11 n 14 GLU 11 B THR 12 n 15 THR 12 B GLN 13 n 16 GLN 13 B ARG 14 n 17 ARG 14 B LEU 15 n 18 LEU 15 B LEU 16 n 19 LEU 16 B ALA 17 n 20 ALA 17 B GLU 18 n 21 GLU 18 B PRO 19 n 22 PRO 19 B VAL 20 n 23 VAL 20 B PRO 21 n 24 PRO 21 B GLY 22 n 25 GLY 22 B ILE 23 n 26 ILE 23 B LYS 24 n 27 LYS 24 B ALA 25 n 28 ALA 25 B GLU 26 n 29 GLU 26 B PRO 27 n 30 PRO 27 B ASP 28 n 31 ASP 28 B GLU 29 n 32 GLU 29 B SER 30 n 33 SER 30 B ASN 31 n 34 ASN 31 B ALA 32 n 35 ALA 32 B ARG 33 n 36 ARG 33 B TYR 34 n 37 TYR 34 B PHE 35 n 38 PHE 35 B HIS 36 n 39 HIS 36 B VAL 37 n 40 VAL 37 B VAL 38 n 41 VAL 38 B ILE 39 n 42 ILE 39 B ALA 40 n 43 ALA 40 B GLY 41 n 44 GLY 41 B PRO 42 n 45 PRO 42 B GLN 43 n 46 GLN 43 B ASP 44 n 47 ASP 44 B SER 45 n 48 SER 45 B PRO 46 n 49 PRO 46 B PHE 47 n 50 PHE 47 B GLU 48 n 51 GLU 48 B GLY 49 n 52 GLY 49 B GLY 50 n 53 GLY 50 B THR 51 n 54 THR 51 B PHE 52 n 55 PHE 52 B LYS 53 n 56 LYS 53 B LEU 54 n 57 LEU 54 B GLU 55 n 58 GLU 55 B LEU 56 n 59 LEU 56 B PHE 57 n 60 PHE 57 B LEU 58 n 61 LEU 58 B PRO 59 n 62 PRO 59 B GLU 60 n 63 GLU 60 B GLU 61 n 64 GLU 61 B TYR 62 n 65 TYR 62 B PRO 63 n 66 PRO 63 B MET 64 n 67 MET 64 B ALA 65 n 68 ALA 65 B ALA 66 n 69 ALA 66 B PRO 67 n 70 PRO 67 B LYS 68 n 71 LYS 68 B VAL 69 n 72 VAL 69 B ARG 70 n 73 ARG 70 B PHE 71 n 74 PHE 71 B MET 72 n 75 MET 72 B THR 73 n 76 THR 73 B LYS 74 n 77 LYS 74 B ILE 75 n 78 ILE 75 B TYR 76 n 79 TYR 76 B HIS 77 n 80 HIS 77 B PRO 78 n 81 PRO 78 B ASN 79 n 82 ASN 79 B VAL 80 n 83 VAL 80 B ASP 81 n 84 ASP 81 B LYS 82 n 85 LYS 82 B LEU 83 n 86 LEU 83 B GLY 84 n 87 GLY 84 B ARG 85 n 88 ARG 85 B ILE 86 n 89 ILE 86 B CYS 87 n 90 CYS 87 B LEU 88 n 91 LEU 88 B ASP 89 n 92 ASP 89 B ILE 90 n 93 ILE 90 B LEU 91 n 94 LEU 91 B LYS 92 n 95 LYS 92 B ASP 93 n 96 ASP 93 B LYS 94 n 97 LYS 94 B TRP 95 n 98 TRP 95 B SER 96 n 99 SER 96 B PRO 97 n 100 PRO 97 B ALA 98 n 101 ALA 98 B LEU 99 n 102 LEU 99 B GLN 100 n 103 GLN 100 B ILE 101 n 104 ILE 101 B ARG 102 n 105 ARG 102 B THR 103 n 106 THR 103 B VAL 104 n 107 VAL 104 B LEU 105 n 108 LEU 105 B LEU 106 n 109 LEU 106 B SER 107 n 110 SER 107 B ILE 108 n 111 ILE 108 B GLN 109 n 112 GLN 109 B ALA 110 n 113 ALA 110 B LEU 111 n 114 LEU 111 B LEU 112 n 115 LEU 112 B SER 113 n 116 SER 113 B ALA 114 n 117 ALA 114 B PRO 115 n 118 PRO 115 B ASN 116 n 119 ASN 116 B PRO 117 n 120 PRO 117 B ASP 118 n 121 ASP 118 B ASP 119 n 122 ASP 119 B PRO 120 n 123 PRO 120 B LEU 121 n 124 LEU 121 B ALA 122 n 125 ALA 122 B ASN 123 n 126 ASN 123 B ASP 124 n 127 ASP 124 B VAL 125 n 128 VAL 125 B ALA 126 n 129 ALA 126 B GLU 127 n 130 GLU 127 B GLN 128 n 131 GLN 128 B TRP 129 n 132 TRP 129 B LYS 130 n 133 LYS 130 B THR 131 n 134 THR 131 B ASN 132 n 135 ASN 132 B GLU 133 n 136 GLU 133 B ALA 134 n 137 ALA 134 B GLN 135 n 138 GLN 135 B ALA 136 n 139 ALA 136 B ILE 137 n 140 ILE 137 B GLU 138 n 141 GLU 138 B THR 139 n 142 THR 139 B ALA 140 n 143 ALA 140 B ARG 141 n 144 ARG 141 B ALA 142 n 145 ALA 142 B TRP 143 n 146 TRP 143 B THR 144 n 147 THR 144 B ARG 145 n 148 ARG 145 B LEU 146 n 149 LEU 146 B TYR 147 n 150 TYR 147 B ALA 148 n 151 ALA 148 B MET 149 n 152 MET 149 B ASN 150 n 153 ASN 150 B ASN 151 n 154 ASN 151 B ILE 152 n 155 ILE 152 B author_and_software_defined_assembly PISA 2 dimeric 2520 -8 16360 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 107 A N ILE 115 A O VAL 187 A O VAL 195 A O ILE 190 A O ILE 198 A N MET 137 A N MET 145 A N ILE 140 A N ILE 148 A O HIS 145 A O HIS 153 A N ALA 148 A N ALA 156 A O LEU 159 A O LEU 167 B N GLU 26 B N GLU 29 B O HIS 36 B O HIS 39 B N VAL 37 B N VAL 40 B O LEU 54 B O LEU 57 B N PHE 57 B N PHE 60 B O LYS 68 B O LYS 71 1 A GLY -7 A GLY 1 1 Y 1 A PRO -6 A PRO 2 1 Y 1 A LEU -5 A LEU 3 1 Y 1 A GLY -4 A GLY 4 1 Y 1 A SER -3 A SER 5 1 Y 1 A PRO -2 A PRO 6 1 Y 1 A GLU -1 A GLU 7 1 Y 1 A PHE 0 A PHE 8 1 Y 1 A MET 1 A MET 9 1 Y 1 A ILE 2 A ILE 10 1 Y 1 A ASN 3 A ASN 11 1 Y 1 A GLY 4 A GLY 12 1 Y 1 A VAL 5 A VAL 13 1 Y 1 A SER 6 A SER 14 1 Y 1 A LEU 7 A LEU 15 1 Y 1 A GLN 8 A GLN 16 1 Y 1 A GLY 9 A GLY 17 1 Y 1 A THR 10 A THR 18 1 Y 1 A ALA 11 A ALA 19 1 Y 1 A GLY 12 A GLY 20 1 Y 1 A TYR 13 A TYR 21 1 Y 1 A GLU 14 A GLU 22 1 Y 1 A ALA 15 A ALA 23 1 Y 1 A HIS 16 A HIS 24 1 Y 1 A THR 17 A THR 25 1 Y 1 A GLU 18 A GLU 26 1 Y 1 A GLU 19 A GLU 27 1 Y 1 A GLY 20 A GLY 28 1 Y 1 B GLY -2 B GLY 1 1 Y 1 B SER -1 B SER 2 1 Y 1 B HIS 0 B HIS 3 1 Y 1 9.21 1.50 119.30 128.51 B B B C N CA ASN PRO PRO 116 117 117 Y 1 A VAL 22 -73.83 30.20 1 A ASN 23 -47.33 170.03 1 A VAL 24 59.99 177.20 1 A LYS 25 -63.83 19.26 1 A LEU 27 -88.20 35.03 1 A ASN 32 -127.81 -54.59 1 A ASP 42 -66.85 -77.28 1 A SER 43 -43.20 -14.14 1 A GLU 44 -72.20 -70.97 1 A SER 56 41.19 95.39 1 A ASP 59 -95.34 -123.33 1 A ASN 61 -71.97 26.84 1 A PRO 84 -23.75 -53.56 1 A HIS 96 -28.73 -64.92 1 A ARG 97 -61.53 -83.05 1 A HIS 98 -56.17 12.71 1 A ASP 103 -84.80 30.65 1 A ASN 112 69.60 -4.91 1 A ALA 123 -69.00 22.19 1 A ASN 125 -59.57 16.37 1 A ILE 126 -123.20 -85.23 1 A GLN 128 -64.19 -75.47 1 A THR 130 -118.76 -163.65 1 A GLN 142 51.45 73.93 1 A VAL 161 53.29 -16.02 1 A LEU 169 -115.88 66.46 1 A ASN 184 45.36 21.79 1 B LEU 4 -113.51 69.36 1 B PRO 5 -40.11 -71.87 1 B ALA 17 -152.63 -55.82 1 B GLU 18 -106.64 51.30 1 B SER 30 -65.21 -76.69 1 B PRO 59 -53.57 178.34 1 B TYR 62 -16.35 -65.91 1 B ILE 75 -170.30 136.10 1 B CYS 87 -111.95 79.27 1 B ILE 90 -66.37 7.56 1 B LYS 92 -95.36 -123.16 1 B LYS 94 -71.87 22.88 1 B ALA 114 -159.30 89.35 1 B PRO 115 -47.36 155.40 1 B ASP 118 -58.28 75.67 1 B THR 131 -105.11 -71.56 0.685 0.000 0.000 0.685 0.000 -1.369 0.284 0.245 2.96 33.1 1251 12256 12150 1 MOLECULAR REPLACEMENT 3B21, 1JBB 2.96 33.1 0 2703 4 0 2699 2.96 50.0 3W31 12250 12193 0.094 1 3.4 99.8 data collection HKL-2000 model building PHENIX refinement CNS data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX Structual basis for the recognition of Ubc13 by the Shigella flexneri effector OspI 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N A ASN 23 A ASN 31 HELX_P A GLU 29 A GLU 37 5 1 7 A GLY 37 A GLY 45 HELX_P A ASN 54 A ASN 62 1 2 18 A ASN 61 A ASN 69 HELX_P A LEU 74 A LEU 82 1 3 14 A VAL 83 A VAL 91 HELX_P A GLU 89 A GLU 97 5 4 7 A TYR 90 A TYR 98 HELX_P A LEU 99 A LEU 107 1 5 10 A GLU 100 A GLU 108 HELX_P A ILE 102 A ILE 110 5 6 3 A THR 114 A THR 122 HELX_P A ALA 123 A ALA 131 1 7 10 A ALA 123 A ALA 131 HELX_P A GLN 128 A GLN 136 1 8 6 A SER 193 A SER 201 HELX_P A ASN 202 A ASN 210 1 9 10 A SER 203 A SER 211 HELX_P A SER 208 A SER 216 1 10 6 B LEU 4 B LEU 7 HELX_P B LEU 16 B LEU 19 1 11 13 B GLU 61 B GLU 64 HELX_P B ALA 65 B ALA 68 5 12 5 B LEU 88 B LEU 91 HELX_P B LYS 92 B LYS 95 5 13 5 B GLN 100 B GLN 103 HELX_P B ALA 114 B ALA 117 1 14 15 B ASN 123 B ASN 126 HELX_P B THR 131 B THR 134 1 15 9 B ASN 132 B ASN 135 HELX_P B TYR 147 B TYR 150 1 16 16 IMMUNE SYSTEM Type 3 secretion system, Effector, Deamidation, IMMUNE SYSTEM Q8VSD5_SHIFL UNP 1 1 Q8VSD5 MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVRE APVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC UBE2N_HUMAN UNP 2 1 P61088 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 1 212 3W31 1 212 Q8VSD5 A 1 9 220 1 152 3W31 1 152 P61088 B 2 4 155 1 expression tag GLY -7 3W31 A Q8VSD5 UNP 1 1 expression tag PRO -6 3W31 A Q8VSD5 UNP 2 1 expression tag LEU -5 3W31 A Q8VSD5 UNP 3 1 expression tag GLY -4 3W31 A Q8VSD5 UNP 4 1 expression tag SER -3 3W31 A Q8VSD5 UNP 5 1 expression tag PRO -2 3W31 A Q8VSD5 UNP 6 1 expression tag GLU -1 3W31 A Q8VSD5 UNP 7 1 expression tag PHE 0 3W31 A Q8VSD5 UNP 8 1 CYS engineered mutation ALA 62 3W31 A Q8VSD5 UNP 62 70 2 expression tag GLY -2 3W31 B P61088 UNP 1 2 expression tag SER -1 3W31 B P61088 UNP 2 2 expression tag HIS 0 3W31 B P61088 UNP 3 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 107 A ILE 115 A VAL 108 A VAL 116 A SER 186 A SER 194 A ILE 190 A ILE 198 A VAL 135 A VAL 143 A ILE 140 A ILE 148 A HIS 145 A HIS 153 A ASN 151 A ASN 159 A ILE 156 A ILE 164 A LEU 159 A LEU 167 B ILE 23 B ILE 26 B PRO 27 B PRO 30 B TYR 34 B TYR 37 B ALA 40 B ALA 43 B THR 51 B THR 54 B PHE 57 B PHE 60 B LYS 68 B LYS 71 B PHE 71 B PHE 74 BINDING SITE FOR RESIDUE IOD A 301 A IOD 301 Software 1 BINDING SITE FOR RESIDUE IOD B 201 B IOD 201 Software 2 BINDING SITE FOR RESIDUE IOD B 202 B IOD 202 Software 1 BINDING SITE FOR RESIDUE IOD B 203 B IOD 203 Software 1 A GLU 89 A GLU 97 1 1_555 B LEU 15 B LEU 18 2 1_555 B ARG 102 B ARG 105 2 1_555 B LEU 83 B LEU 86 1 1_555 B ARG 141 B ARG 144 1 1_555 150 P 3 2 1