0.023574 0.000000 0.000000 -0.000000 0.011977 0.000000 0.000000 -0.000000 0.015748 0.000000 0.000000 0.000000 Lima, L.M.T.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 42.420 83.490 63.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N O N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 N C N 109 N C N 110 N O N 111 N O N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C Y 122 N C Y 123 N N Y 124 N C Y 125 N C Y 126 N N N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N O N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 S C N 146 N C N 147 N C N 148 N C N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N C N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N C N 191 N C N 192 N C N 193 N N N 194 N O N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C N 215 N C N 216 N S N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C Y 235 N C Y 236 N C Y 237 N C Y 238 N C Y 239 N C Y 240 N C N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N O N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 R C N 289 N O N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N N Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N C N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing Y 121 N sing Y 122 N doub Y 123 N doub N 124 N sing Y 125 N sing N 126 N sing Y 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing Y 229 N doub Y 230 N sing Y 231 N sing N 232 N sing Y 233 N doub N 234 N sing Y 235 N doub N 236 N sing Y 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing Y 298 N doub Y 299 N sing Y 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N sing Y 307 N doub N 308 N sing Y 309 N doub N 310 N sing Y 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing TO BE PUBLISHED 0353 Crystal structure of wild-type human transthyretin 10.2210/pdb3w3b/pdb pdb_00003w3b 1 CCD MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 1.425 1.0 D03B-MX1 LNLS 1.425 SYNCHROTRON LNLS BEAMLINE D03B-MX1 13777.360 Transthyretin 2 man polymer 18.015 water 149 nat water ATTR, Prealbumin, TBPA no no GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample TTR, PALB 9606 Homo sapiens 562 Escherichia coli plasmid 1 2.04 39.72 VAPOR DIFFUSION, HANGING DROP 7.0 pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Refinement description 1 0 2013-01-30 1 1 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession PDBJ Y PDBJ 2012-12-19 REL REL HOH water 1TTA PDB ENTRY 1TTA PDB experimental model HOH 2 2 HOH HOH 201 A HOH 3 2 HOH HOH 202 A HOH 4 2 HOH HOH 203 A HOH 6 2 HOH HOH 204 A HOH 7 2 HOH HOH 205 A HOH 12 2 HOH HOH 206 A HOH 13 2 HOH HOH 207 A HOH 14 2 HOH HOH 208 A HOH 15 2 HOH HOH 209 A HOH 16 2 HOH HOH 210 A HOH 18 2 HOH HOH 211 A HOH 19 2 HOH HOH 212 A HOH 21 2 HOH HOH 213 A HOH 23 2 HOH HOH 214 A HOH 25 2 HOH HOH 215 A HOH 27 2 HOH HOH 216 A HOH 28 2 HOH HOH 217 A HOH 32 2 HOH HOH 218 A HOH 33 2 HOH HOH 219 A HOH 34 2 HOH HOH 220 A HOH 35 2 HOH HOH 221 A HOH 36 2 HOH HOH 222 A HOH 41 2 HOH HOH 223 A HOH 45 2 HOH HOH 224 A HOH 46 2 HOH HOH 225 A HOH 47 2 HOH HOH 226 A HOH 49 2 HOH HOH 227 A HOH 53 2 HOH HOH 228 A HOH 57 2 HOH HOH 229 A HOH 59 2 HOH HOH 230 A HOH 60 2 HOH HOH 231 A HOH 61 2 HOH HOH 232 A HOH 63 2 HOH HOH 233 A HOH 70 2 HOH HOH 234 A HOH 72 2 HOH HOH 235 A HOH 73 2 HOH HOH 236 A HOH 81 2 HOH HOH 237 A HOH 82 2 HOH HOH 238 A HOH 84 2 HOH HOH 239 A HOH 85 2 HOH HOH 240 A HOH 87 2 HOH HOH 241 A HOH 88 2 HOH HOH 242 A HOH 89 2 HOH HOH 243 A HOH 90 2 HOH HOH 244 A HOH 91 2 HOH HOH 245 A HOH 94 2 HOH HOH 246 A HOH 96 2 HOH HOH 247 A HOH 100 2 HOH HOH 248 A HOH 101 2 HOH HOH 249 A HOH 103 2 HOH HOH 250 A HOH 105 2 HOH HOH 251 A HOH 106 2 HOH HOH 252 A HOH 109 2 HOH HOH 253 A HOH 112 2 HOH HOH 254 A HOH 113 2 HOH HOH 255 A HOH 124 2 HOH HOH 256 A HOH 126 2 HOH HOH 257 A HOH 129 2 HOH HOH 258 A HOH 130 2 HOH HOH 259 A HOH 133 2 HOH HOH 260 A HOH 135 2 HOH HOH 261 A HOH 139 2 HOH HOH 262 A HOH 143 2 HOH HOH 263 A HOH 148 2 HOH HOH 264 A HOH 149 2 HOH HOH 265 A HOH 150 2 HOH HOH 266 A HOH 151 2 HOH HOH 267 A HOH 152 2 HOH HOH 268 A HOH 155 2 HOH HOH 269 A HOH 158 2 HOH HOH 270 A HOH 159 2 HOH HOH 271 A HOH 160 2 HOH HOH 272 A HOH 162 2 HOH HOH 273 A HOH 166 2 HOH HOH 274 A HOH 167 2 HOH HOH 275 A HOH 168 2 HOH HOH 276 A HOH 169 2 HOH HOH 277 A HOH 180 2 HOH HOH 278 A HOH 186 2 HOH HOH 279 A HOH 196 2 HOH HOH 280 A HOH 197 2 HOH HOH 281 A HOH 200 2 HOH HOH 282 A HOH 201 2 HOH HOH 283 A HOH 202 2 HOH HOH 284 A HOH 206 2 HOH HOH 285 A HOH 213 2 HOH HOH 286 A HOH 214 2 HOH HOH 287 A HOH 222 2 HOH HOH 288 A HOH 229 2 HOH HOH 289 A HOH 232 2 HOH HOH 290 A HOH 233 2 HOH HOH 291 A HOH 234 2 HOH HOH 292 A HOH 1 2 HOH HOH 201 B HOH 5 2 HOH HOH 202 B HOH 9 2 HOH HOH 203 B HOH 10 2 HOH HOH 204 B HOH 11 2 HOH HOH 205 B HOH 17 2 HOH HOH 206 B HOH 24 2 HOH HOH 207 B HOH 26 2 HOH HOH 208 B HOH 29 2 HOH HOH 209 B HOH 30 2 HOH HOH 210 B HOH 37 2 HOH HOH 211 B HOH 39 2 HOH HOH 212 B HOH 40 2 HOH HOH 213 B HOH 42 2 HOH HOH 214 B HOH 44 2 HOH HOH 215 B HOH 48 2 HOH HOH 216 B HOH 50 2 HOH HOH 217 B HOH 51 2 HOH HOH 218 B HOH 55 2 HOH HOH 219 B HOH 56 2 HOH HOH 220 B HOH 62 2 HOH HOH 221 B HOH 65 2 HOH HOH 222 B HOH 68 2 HOH HOH 223 B HOH 71 2 HOH HOH 224 B HOH 74 2 HOH HOH 225 B HOH 76 2 HOH HOH 226 B HOH 77 2 HOH HOH 227 B HOH 78 2 HOH HOH 228 B HOH 86 2 HOH HOH 229 B HOH 92 2 HOH HOH 230 B HOH 93 2 HOH HOH 231 B HOH 98 2 HOH HOH 232 B HOH 99 2 HOH HOH 233 B HOH 104 2 HOH HOH 234 B HOH 108 2 HOH HOH 235 B HOH 110 2 HOH HOH 236 B HOH 111 2 HOH HOH 237 B HOH 114 2 HOH HOH 238 B HOH 117 2 HOH HOH 239 B HOH 118 2 HOH HOH 240 B HOH 121 2 HOH HOH 241 B HOH 123 2 HOH HOH 242 B HOH 125 2 HOH HOH 243 B HOH 128 2 HOH HOH 244 B HOH 132 2 HOH HOH 245 B HOH 142 2 HOH HOH 246 B HOH 157 2 HOH HOH 247 B HOH 163 2 HOH HOH 248 B HOH 171 2 HOH HOH 249 B HOH 174 2 HOH HOH 250 B HOH 184 2 HOH HOH 251 B HOH 190 2 HOH HOH 252 B HOH 198 2 HOH HOH 253 B HOH 199 2 HOH HOH 254 B HOH 205 2 HOH HOH 255 B HOH 207 2 HOH HOH 256 B HOH 217 2 HOH HOH 257 B 3.500 3.500 21.850 21.850 n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A CYS 10 n 10 CYS 10 A PRO 11 n 11 PRO 11 A LEU 12 n 12 LEU 12 A MET 13 n 13 MET 13 A VAL 14 n 14 VAL 14 A LYS 15 n 15 LYS 15 A VAL 16 n 16 VAL 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ALA 19 n 19 ALA 19 A VAL 20 n 20 VAL 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A SER 23 n 23 SER 23 A PRO 24 n 24 PRO 24 A ALA 25 n 25 ALA 25 A ILE 26 n 26 ILE 26 A ASN 27 n 27 ASN 27 A VAL 28 n 28 VAL 28 A ALA 29 n 29 ALA 29 A VAL 30 n 30 VAL 30 A HIS 31 n 31 HIS 31 A VAL 32 n 32 VAL 32 A PHE 33 n 33 PHE 33 A ARG 34 n 34 ARG 34 A LYS 35 n 35 LYS 35 A ALA 36 n 36 ALA 36 A ALA 37 n 37 ALA 37 A ASP 38 n 38 ASP 38 A ASP 39 n 39 ASP 39 A THR 40 n 40 THR 40 A TRP 41 n 41 TRP 41 A GLU 42 n 42 GLU 42 A PRO 43 n 43 PRO 43 A PHE 44 n 44 PHE 44 A ALA 45 n 45 ALA 45 A SER 46 n 46 SER 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A THR 49 n 49 THR 49 A SER 50 n 50 SER 50 A GLU 51 n 51 GLU 51 A SER 52 n 52 SER 52 A GLY 53 n 53 GLY 53 A GLU 54 n 54 GLU 54 A LEU 55 n 55 LEU 55 A HIS 56 n 56 HIS 56 A GLY 57 n 57 GLY 57 A LEU 58 n 58 LEU 58 A THR 59 n 59 THR 59 A THR 60 n 60 THR 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A GLU 63 n 63 GLU 63 A PHE 64 n 64 PHE 64 A VAL 65 n 65 VAL 65 A GLU 66 n 66 GLU 66 A GLY 67 n 67 GLY 67 A ILE 68 n 68 ILE 68 A TYR 69 n 69 TYR 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A GLU 72 n 72 GLU 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A THR 75 n 75 THR 75 A LYS 76 n 76 LYS 76 A SER 77 n 77 SER 77 A TYR 78 n 78 TYR 78 A TRP 79 n 79 TRP 79 A LYS 80 n 80 LYS 80 A ALA 81 n 81 ALA 81 A LEU 82 n 82 LEU 82 A GLY 83 n 83 GLY 83 A ILE 84 n 84 ILE 84 A SER 85 n 85 SER 85 A PRO 86 n 86 PRO 86 A PHE 87 n 87 PHE 87 A HIS 88 n 88 HIS 88 A GLU 89 n 89 GLU 89 A HIS 90 n 90 HIS 90 A ALA 91 n 91 ALA 91 A GLU 92 n 92 GLU 92 A VAL 93 n 93 VAL 93 A VAL 94 n 94 VAL 94 A PHE 95 n 95 PHE 95 A THR 96 n 96 THR 96 A ALA 97 n 97 ALA 97 A ASN 98 n 98 ASN 98 A ASP 99 n 99 ASP 99 A SER 100 n 100 SER 100 A GLY 101 n 101 GLY 101 A PRO 102 n 102 PRO 102 A ARG 103 n 103 ARG 103 A ARG 104 n 104 ARG 104 A TYR 105 n 105 TYR 105 A THR 106 n 106 THR 106 A ILE 107 n 107 ILE 107 A ALA 108 n 108 ALA 108 A ALA 109 n 109 ALA 109 A LEU 110 n 110 LEU 110 A LEU 111 n 111 LEU 111 A SER 112 n 112 SER 112 A PRO 113 n 113 PRO 113 A TYR 114 n 114 TYR 114 A SER 115 n 115 SER 115 A TYR 116 n 116 TYR 116 A SER 117 n 117 SER 117 A THR 118 n 118 THR 118 A THR 119 n 119 THR 119 A ALA 120 n 120 ALA 120 A VAL 121 n 121 VAL 121 A VAL 122 n 122 VAL 122 A THR 123 n 123 THR 123 A ASN 124 n 124 ASN 124 A PRO 125 n 125 PRO 125 A n 126 126 A n 127 127 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B CYS 10 n 10 CYS 10 B PRO 11 n 11 PRO 11 B LEU 12 n 12 LEU 12 B MET 13 n 13 MET 13 B VAL 14 n 14 VAL 14 B LYS 15 n 15 LYS 15 B VAL 16 n 16 VAL 16 B LEU 17 n 17 LEU 17 B ASP 18 n 18 ASP 18 B ALA 19 n 19 ALA 19 B VAL 20 n 20 VAL 20 B ARG 21 n 21 ARG 21 B GLY 22 n 22 GLY 22 B SER 23 n 23 SER 23 B PRO 24 n 24 PRO 24 B ALA 25 n 25 ALA 25 B ILE 26 n 26 ILE 26 B ASN 27 n 27 ASN 27 B VAL 28 n 28 VAL 28 B ALA 29 n 29 ALA 29 B VAL 30 n 30 VAL 30 B HIS 31 n 31 HIS 31 B VAL 32 n 32 VAL 32 B PHE 33 n 33 PHE 33 B ARG 34 n 34 ARG 34 B LYS 35 n 35 LYS 35 B ALA 36 n 36 ALA 36 B ALA 37 n 37 ALA 37 B ASP 38 n 38 ASP 38 B ASP 39 n 39 ASP 39 B THR 40 n 40 THR 40 B TRP 41 n 41 TRP 41 B GLU 42 n 42 GLU 42 B PRO 43 n 43 PRO 43 B PHE 44 n 44 PHE 44 B ALA 45 n 45 ALA 45 B SER 46 n 46 SER 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B THR 49 n 49 THR 49 B SER 50 n 50 SER 50 B GLU 51 n 51 GLU 51 B SER 52 n 52 SER 52 B GLY 53 n 53 GLY 53 B GLU 54 n 54 GLU 54 B LEU 55 n 55 LEU 55 B HIS 56 n 56 HIS 56 B GLY 57 n 57 GLY 57 B LEU 58 n 58 LEU 58 B THR 59 n 59 THR 59 B THR 60 n 60 THR 60 B GLU 61 n 61 GLU 61 B GLU 62 n 62 GLU 62 B GLU 63 n 63 GLU 63 B PHE 64 n 64 PHE 64 B VAL 65 n 65 VAL 65 B GLU 66 n 66 GLU 66 B GLY 67 n 67 GLY 67 B ILE 68 n 68 ILE 68 B TYR 69 n 69 TYR 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B GLU 72 n 72 GLU 72 B ILE 73 n 73 ILE 73 B ASP 74 n 74 ASP 74 B THR 75 n 75 THR 75 B LYS 76 n 76 LYS 76 B SER 77 n 77 SER 77 B TYR 78 n 78 TYR 78 B TRP 79 n 79 TRP 79 B LYS 80 n 80 LYS 80 B ALA 81 n 81 ALA 81 B LEU 82 n 82 LEU 82 B GLY 83 n 83 GLY 83 B ILE 84 n 84 ILE 84 B SER 85 n 85 SER 85 B PRO 86 n 86 PRO 86 B PHE 87 n 87 PHE 87 B HIS 88 n 88 HIS 88 B GLU 89 n 89 GLU 89 B HIS 90 n 90 HIS 90 B ALA 91 n 91 ALA 91 B GLU 92 n 92 GLU 92 B VAL 93 n 93 VAL 93 B VAL 94 n 94 VAL 94 B PHE 95 n 95 PHE 95 B THR 96 n 96 THR 96 B ALA 97 n 97 ALA 97 B ASN 98 n 98 ASN 98 B ASP 99 n 99 ASP 99 B SER 100 n 100 SER 100 B GLY 101 n 101 GLY 101 B PRO 102 n 102 PRO 102 B ARG 103 n 103 ARG 103 B ARG 104 n 104 ARG 104 B TYR 105 n 105 TYR 105 B THR 106 n 106 THR 106 B ILE 107 n 107 ILE 107 B ALA 108 n 108 ALA 108 B ALA 109 n 109 ALA 109 B LEU 110 n 110 LEU 110 B LEU 111 n 111 LEU 111 B SER 112 n 112 SER 112 B PRO 113 n 113 PRO 113 B TYR 114 n 114 TYR 114 B SER 115 n 115 SER 115 B TYR 116 n 116 TYR 116 B SER 117 n 117 SER 117 B THR 118 n 118 THR 118 B THR 119 n 119 THR 119 B ALA 120 n 120 ALA 120 B VAL 121 n 121 VAL 121 B VAL 122 n 122 VAL 122 B THR 123 n 123 THR 123 B ASN 124 n 124 ASN 124 B n 125 125 B n 126 126 B n 127 127 B author_and_software_defined_assembly PISA 4 tetrameric 6080 -46 18230 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O SER 23 A O SER 23 A N ASP 18 A N ASP 18 A N MET 13 A N MET 13 A O ILE 107 A O ILE 107 A N ALA 108 A N ALA 108 A O THR 119 A O THR 119 A N TYR 116 A N TYR 116 B O THR 118 B O THR 118 B O THR 119 B O THR 119 B N ALA 108 B N ALA 108 B O ILE 107 B O ILE 107 B N MET 13 B N MET 13 B N ASP 18 B N ASP 18 B O SER 23 B O SER 23 A O LEU 55 A O LEU 55 A N VAL 14 A N VAL 14 A N MET 13 A N MET 13 A O ILE 107 A O ILE 107 A N ALA 108 A N ALA 108 A O THR 119 A O THR 119 A N TYR 116 A N TYR 116 B O THR 118 B O THR 118 B O THR 119 B O THR 119 B N ALA 108 B N ALA 108 B O ILE 107 B O ILE 107 B N MET 13 B N MET 13 B N VAL 14 B N VAL 14 B O LEU 55 B O LEU 55 A O ALA 45 A O ALA 45 A N VAL 32 A N VAL 32 A N HIS 31 A N HIS 31 A O GLU 72 A O GLU 72 A N ILE 73 A N ILE 73 A O ALA 91 A O ALA 91 A N VAL 94 A N VAL 94 B O GLU 89 B O GLU 89 B O ALA 91 B O ALA 91 B N ILE 73 B N ILE 73 B O GLU 72 B O GLU 72 B N HIS 31 B N HIS 31 B N VAL 32 B N VAL 32 B O ALA 45 B O ALA 45 1 A HOH 221 C HOH 1 B HOH 211 D HOH 1 A GLY 1 A GLY 1 1 Y 1 A PRO 2 A PRO 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A GLY 4 A GLY 4 1 Y 1 A THR 5 A THR 5 1 Y 1 A GLY 6 A GLY 6 1 Y 1 A GLU 7 A GLU 7 1 Y 1 A SER 8 A SER 8 1 Y 1 A LYS 9 A LYS 9 1 Y 1 A LYS 126 A LYS 126 1 Y 1 A GLU 127 A GLU 127 1 Y 1 B GLY 1 B GLY 1 1 Y 1 B PRO 2 B PRO 2 1 Y 1 B THR 3 B THR 3 1 Y 1 B GLY 4 B GLY 4 1 Y 1 B THR 5 B THR 5 1 Y 1 B GLY 6 B GLY 6 1 Y 1 B GLU 7 B GLU 7 1 Y 1 B SER 8 B SER 8 1 Y 1 B LYS 9 B LYS 9 1 Y 1 B PRO 125 B PRO 125 1 Y 1 B LYS 126 B LYS 126 1 Y 1 B GLU 127 B GLU 127 1 Y 1 B B OD1 O ASN HOH 27 257 2.09 A 1 B B OD1 O ASN HOH 124 246 2.12 1 A A OH O TYR HOH 116 292 2.13 1 A A O O HOH HOH 202 288 2.14 1 B A OH O TYR HOH 116 292 2.16 1 5.73 0.90 118.30 124.03 A A A CB CG OD1 ASP ASP ASP 18 18 18 N 1 -7.85 0.90 118.30 110.45 A A A CB CG OD2 ASP ASP ASP 18 18 18 N 1 19.29 2.70 111.00 130.29 A A A N CA C ALA ALA ALA 37 37 37 N 1 A A O O HOH HOH 283 288 2.10 1_555 4_556 1 A A O O HOH HOH 234 290 2.10 1_555 4_556 1 A A OE1 O GLU HOH 51 279 2.11 B 1_555 4_556 1 B B OE2 O GLU HOH 62 252 2.13 A 1_555 4_555 1 A ASP 38 A 108.02 -45.04 1 A ASP 38 B 108.11 -50.10 1 B ASP 38 -79.17 25.76 1 B ASP 39 B 31.51 44.70 1 B PHE 44 -133.79 -45.58 1 B HIS 90 B -171.24 -178.57 1 B ASN 98 24.61 -170.15 1 B ARG 103 87.62 125.52 113.650 29.4994 11.150 -0.4400 0.0000 -0.0000 -0.5000 -0.0000 0.9400 0.9610 0.9270 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY 0.2354 0.1796 0.1823 1.9000 21.8500 909 17746 5.1000 96.3700 0.2105 0.1644 1.000 0.010 0.8385 4.0810 0.1190 0.1885 0.1686 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1890 0.1690 0.8000 0.8000 1.2000 PDB ENTRY 1TTA MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.9000 21.8500 149 1934 0 0 1785 0.019 0.019 2190 0.002 0.020 1979 2.030 1.932 3034 0.919 3.000 4599 6.999 5.000 296 33.430 23.592 103 17.616 15.000 344 20.137 15.000 13 0.122 0.200 324 0.009 0.021 2655 0.002 0.020 526 0.3440 0.2560 1.9490 71 1162 1233 20 92.7100 1.900 63.500 3W3B 17774 17774 0.057 0.057 1 19.900 3.200 97.000 0.302 0.254 1.900 2.000 2.800 7738 2460 0.162 0.302 0.254 1 3.200 3.100 93.700 0.196 0.165 2.000 2.120 4.300 7243 2327 0.104 0.196 0.165 1 5.300 3.100 94.000 0.148 0.124 2.120 2.270 5.400 6881 2214 0.080 0.148 0.124 1 8.100 3.100 95.400 0.125 0.105 2.270 2.450 6.500 6611 2126 0.067 0.125 0.105 1 10.200 3.100 96.800 0.095 0.080 2.450 2.690 8.500 6355 1991 0.052 0.095 0.080 1 15.400 3.200 98.800 0.074 0.062 2.690 3.000 10.900 6070 1848 0.040 0.074 0.062 1 23.600 3.300 99.700 0.056 0.047 3.000 3.470 12.900 5385 1638 0.031 0.056 0.047 1 35.800 3.300 99.700 0.049 0.041 3.470 4.250 13.800 4553 1419 0.027 0.049 0.041 1 48.900 3.200 99.900 0.042 0.035 4.250 6.010 14.900 3515 1102 0.023 0.042 0.035 1 54.500 3.200 99.800 0.034 0.028 6.010 21.849 16.300 1936 649 0.019 0.034 0.028 1 48.600 3.000 97.500 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 21/9/2006 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.2.25 phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 Crystal structure of wild-type human transthyretin 1 N N 1 N N 2 N N 2 N N A ASP 74 A ASP 74 HELX_P A LEU 82 A LEU 82 1 1 9 B ASP 74 B ASP 74 HELX_P B LEU 82 B LEU 82 1 2 9 TRANSPORT PROTEIN amyloid, tranthyretin, TRANSPORT PROTEIN A ALA 37 A ALA 37 1 A ASP 38 A ASP 38 12.39 A ALA 37 A ALA 37 1 A ASP 38 A ASP 38 14.04 B ASN 98 B ASN 98 1 B ASP 99 B ASP 99 9.66 B ASP 99 B ASP 99 1 B SER 100 B SER 100 15.79 B PRO 102 B PRO 102 1 B ARG 103 B ARG 103 -19.47 TTHY_HUMAN UNP 1 21 P02766 GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE 21 147 3W3B 1 127 P02766 A 1 1 127 21 147 3W3B 1 127 P02766 B 1 1 127 8 8 8 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 23 A SER 23 A PRO 24 A PRO 24 A LEU 12 A LEU 12 A ASP 18 A ASP 18 A ARG 104 A ARG 104 A SER 112 A SER 112 A SER 115 A SER 115 A THR 123 A THR 123 B SER 115 B SER 115 B THR 123 B THR 123 B ARG 104 B ARG 104 B SER 112 B SER 112 B LEU 12 B LEU 12 B ASP 18 B ASP 18 B SER 23 B SER 23 B PRO 24 B PRO 24 A GLU 54 A GLU 54 A LEU 55 A LEU 55 A LEU 12 A LEU 12 A ASP 18 A ASP 18 A ARG 104 A ARG 104 A SER 112 A SER 112 A SER 115 A SER 115 A THR 123 A THR 123 B SER 115 B SER 115 B THR 123 B THR 123 B ARG 104 B ARG 104 B SER 112 B SER 112 B LEU 12 B LEU 12 B ASP 18 B ASP 18 B GLU 54 B GLU 54 B LEU 55 B LEU 55 A TRP 41 A TRP 41 A LYS 48 A LYS 48 A ALA 29 A ALA 29 A LYS 35 A LYS 35 A GLY 67 A GLY 67 A ILE 73 A ILE 73 A ALA 91 A ALA 91 A ALA 97 A ALA 97 B HIS 88 B HIS 88 B ALA 97 B ALA 97 B GLY 67 B GLY 67 B ILE 73 B ILE 73 B ALA 29 B ALA 29 B LYS 35 B LYS 35 B TRP 41 B TRP 41 B LYS 48 B LYS 48 18 P 21 21 2