0.023574
0.000000
0.000000
-0.000000
0.011977
0.000000
0.000000
-0.000000
0.015748
0.000000
0.000000
0.000000
Lima, L.M.T.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
42.420
83.490
63.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
Y
122
N
C
Y
123
N
N
Y
124
N
C
Y
125
N
C
Y
126
N
N
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
S
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
S
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
R
C
N
289
N
O
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
N
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
Y
121
N
sing
Y
122
N
doub
Y
123
N
doub
N
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
doub
Y
230
N
sing
Y
231
N
sing
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
doub
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
TO BE PUBLISHED
0353
Crystal structure of wild-type human transthyretin
10.2210/pdb3w3b/pdb
pdb_00003w3b
1
CCD
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
1.425
1.0
D03B-MX1
LNLS
1.425
SYNCHROTRON
LNLS BEAMLINE D03B-MX1
13777.360
Transthyretin
2
man
polymer
18.015
water
149
nat
water
ATTR, Prealbumin, TBPA
no
no
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
TTR, PALB
9606
Homo sapiens
562
Escherichia coli
plasmid
1
2.04
39.72
VAPOR DIFFUSION, HANGING DROP
7.0
pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2013-01-30
1
1
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
PDBJ
Y
PDBJ
2012-12-19
REL
REL
HOH
water
1TTA
PDB ENTRY 1TTA
PDB
experimental model
HOH
2
2
HOH
HOH
201
A
HOH
3
2
HOH
HOH
202
A
HOH
4
2
HOH
HOH
203
A
HOH
6
2
HOH
HOH
204
A
HOH
7
2
HOH
HOH
205
A
HOH
12
2
HOH
HOH
206
A
HOH
13
2
HOH
HOH
207
A
HOH
14
2
HOH
HOH
208
A
HOH
15
2
HOH
HOH
209
A
HOH
16
2
HOH
HOH
210
A
HOH
18
2
HOH
HOH
211
A
HOH
19
2
HOH
HOH
212
A
HOH
21
2
HOH
HOH
213
A
HOH
23
2
HOH
HOH
214
A
HOH
25
2
HOH
HOH
215
A
HOH
27
2
HOH
HOH
216
A
HOH
28
2
HOH
HOH
217
A
HOH
32
2
HOH
HOH
218
A
HOH
33
2
HOH
HOH
219
A
HOH
34
2
HOH
HOH
220
A
HOH
35
2
HOH
HOH
221
A
HOH
36
2
HOH
HOH
222
A
HOH
41
2
HOH
HOH
223
A
HOH
45
2
HOH
HOH
224
A
HOH
46
2
HOH
HOH
225
A
HOH
47
2
HOH
HOH
226
A
HOH
49
2
HOH
HOH
227
A
HOH
53
2
HOH
HOH
228
A
HOH
57
2
HOH
HOH
229
A
HOH
59
2
HOH
HOH
230
A
HOH
60
2
HOH
HOH
231
A
HOH
61
2
HOH
HOH
232
A
HOH
63
2
HOH
HOH
233
A
HOH
70
2
HOH
HOH
234
A
HOH
72
2
HOH
HOH
235
A
HOH
73
2
HOH
HOH
236
A
HOH
81
2
HOH
HOH
237
A
HOH
82
2
HOH
HOH
238
A
HOH
84
2
HOH
HOH
239
A
HOH
85
2
HOH
HOH
240
A
HOH
87
2
HOH
HOH
241
A
HOH
88
2
HOH
HOH
242
A
HOH
89
2
HOH
HOH
243
A
HOH
90
2
HOH
HOH
244
A
HOH
91
2
HOH
HOH
245
A
HOH
94
2
HOH
HOH
246
A
HOH
96
2
HOH
HOH
247
A
HOH
100
2
HOH
HOH
248
A
HOH
101
2
HOH
HOH
249
A
HOH
103
2
HOH
HOH
250
A
HOH
105
2
HOH
HOH
251
A
HOH
106
2
HOH
HOH
252
A
HOH
109
2
HOH
HOH
253
A
HOH
112
2
HOH
HOH
254
A
HOH
113
2
HOH
HOH
255
A
HOH
124
2
HOH
HOH
256
A
HOH
126
2
HOH
HOH
257
A
HOH
129
2
HOH
HOH
258
A
HOH
130
2
HOH
HOH
259
A
HOH
133
2
HOH
HOH
260
A
HOH
135
2
HOH
HOH
261
A
HOH
139
2
HOH
HOH
262
A
HOH
143
2
HOH
HOH
263
A
HOH
148
2
HOH
HOH
264
A
HOH
149
2
HOH
HOH
265
A
HOH
150
2
HOH
HOH
266
A
HOH
151
2
HOH
HOH
267
A
HOH
152
2
HOH
HOH
268
A
HOH
155
2
HOH
HOH
269
A
HOH
158
2
HOH
HOH
270
A
HOH
159
2
HOH
HOH
271
A
HOH
160
2
HOH
HOH
272
A
HOH
162
2
HOH
HOH
273
A
HOH
166
2
HOH
HOH
274
A
HOH
167
2
HOH
HOH
275
A
HOH
168
2
HOH
HOH
276
A
HOH
169
2
HOH
HOH
277
A
HOH
180
2
HOH
HOH
278
A
HOH
186
2
HOH
HOH
279
A
HOH
196
2
HOH
HOH
280
A
HOH
197
2
HOH
HOH
281
A
HOH
200
2
HOH
HOH
282
A
HOH
201
2
HOH
HOH
283
A
HOH
202
2
HOH
HOH
284
A
HOH
206
2
HOH
HOH
285
A
HOH
213
2
HOH
HOH
286
A
HOH
214
2
HOH
HOH
287
A
HOH
222
2
HOH
HOH
288
A
HOH
229
2
HOH
HOH
289
A
HOH
232
2
HOH
HOH
290
A
HOH
233
2
HOH
HOH
291
A
HOH
234
2
HOH
HOH
292
A
HOH
1
2
HOH
HOH
201
B
HOH
5
2
HOH
HOH
202
B
HOH
9
2
HOH
HOH
203
B
HOH
10
2
HOH
HOH
204
B
HOH
11
2
HOH
HOH
205
B
HOH
17
2
HOH
HOH
206
B
HOH
24
2
HOH
HOH
207
B
HOH
26
2
HOH
HOH
208
B
HOH
29
2
HOH
HOH
209
B
HOH
30
2
HOH
HOH
210
B
HOH
37
2
HOH
HOH
211
B
HOH
39
2
HOH
HOH
212
B
HOH
40
2
HOH
HOH
213
B
HOH
42
2
HOH
HOH
214
B
HOH
44
2
HOH
HOH
215
B
HOH
48
2
HOH
HOH
216
B
HOH
50
2
HOH
HOH
217
B
HOH
51
2
HOH
HOH
218
B
HOH
55
2
HOH
HOH
219
B
HOH
56
2
HOH
HOH
220
B
HOH
62
2
HOH
HOH
221
B
HOH
65
2
HOH
HOH
222
B
HOH
68
2
HOH
HOH
223
B
HOH
71
2
HOH
HOH
224
B
HOH
74
2
HOH
HOH
225
B
HOH
76
2
HOH
HOH
226
B
HOH
77
2
HOH
HOH
227
B
HOH
78
2
HOH
HOH
228
B
HOH
86
2
HOH
HOH
229
B
HOH
92
2
HOH
HOH
230
B
HOH
93
2
HOH
HOH
231
B
HOH
98
2
HOH
HOH
232
B
HOH
99
2
HOH
HOH
233
B
HOH
104
2
HOH
HOH
234
B
HOH
108
2
HOH
HOH
235
B
HOH
110
2
HOH
HOH
236
B
HOH
111
2
HOH
HOH
237
B
HOH
114
2
HOH
HOH
238
B
HOH
117
2
HOH
HOH
239
B
HOH
118
2
HOH
HOH
240
B
HOH
121
2
HOH
HOH
241
B
HOH
123
2
HOH
HOH
242
B
HOH
125
2
HOH
HOH
243
B
HOH
128
2
HOH
HOH
244
B
HOH
132
2
HOH
HOH
245
B
HOH
142
2
HOH
HOH
246
B
HOH
157
2
HOH
HOH
247
B
HOH
163
2
HOH
HOH
248
B
HOH
171
2
HOH
HOH
249
B
HOH
174
2
HOH
HOH
250
B
HOH
184
2
HOH
HOH
251
B
HOH
190
2
HOH
HOH
252
B
HOH
198
2
HOH
HOH
253
B
HOH
199
2
HOH
HOH
254
B
HOH
205
2
HOH
HOH
255
B
HOH
207
2
HOH
HOH
256
B
HOH
217
2
HOH
HOH
257
B
3.500
3.500
21.850
21.850
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
CYS
10
n
10
CYS
10
A
PRO
11
n
11
PRO
11
A
LEU
12
n
12
LEU
12
A
MET
13
n
13
MET
13
A
VAL
14
n
14
VAL
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ALA
19
n
19
ALA
19
A
VAL
20
n
20
VAL
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
SER
23
n
23
SER
23
A
PRO
24
n
24
PRO
24
A
ALA
25
n
25
ALA
25
A
ILE
26
n
26
ILE
26
A
ASN
27
n
27
ASN
27
A
VAL
28
n
28
VAL
28
A
ALA
29
n
29
ALA
29
A
VAL
30
n
30
VAL
30
A
HIS
31
n
31
HIS
31
A
VAL
32
n
32
VAL
32
A
PHE
33
n
33
PHE
33
A
ARG
34
n
34
ARG
34
A
LYS
35
n
35
LYS
35
A
ALA
36
n
36
ALA
36
A
ALA
37
n
37
ALA
37
A
ASP
38
n
38
ASP
38
A
ASP
39
n
39
ASP
39
A
THR
40
n
40
THR
40
A
TRP
41
n
41
TRP
41
A
GLU
42
n
42
GLU
42
A
PRO
43
n
43
PRO
43
A
PHE
44
n
44
PHE
44
A
ALA
45
n
45
ALA
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
THR
49
n
49
THR
49
A
SER
50
n
50
SER
50
A
GLU
51
n
51
GLU
51
A
SER
52
n
52
SER
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
LEU
55
n
55
LEU
55
A
HIS
56
n
56
HIS
56
A
GLY
57
n
57
GLY
57
A
LEU
58
n
58
LEU
58
A
THR
59
n
59
THR
59
A
THR
60
n
60
THR
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
PHE
64
n
64
PHE
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
TYR
69
n
69
TYR
69
A
LYS
70
n
70
LYS
70
A
VAL
71
n
71
VAL
71
A
GLU
72
n
72
GLU
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
THR
75
n
75
THR
75
A
LYS
76
n
76
LYS
76
A
SER
77
n
77
SER
77
A
TYR
78
n
78
TYR
78
A
TRP
79
n
79
TRP
79
A
LYS
80
n
80
LYS
80
A
ALA
81
n
81
ALA
81
A
LEU
82
n
82
LEU
82
A
GLY
83
n
83
GLY
83
A
ILE
84
n
84
ILE
84
A
SER
85
n
85
SER
85
A
PRO
86
n
86
PRO
86
A
PHE
87
n
87
PHE
87
A
HIS
88
n
88
HIS
88
A
GLU
89
n
89
GLU
89
A
HIS
90
n
90
HIS
90
A
ALA
91
n
91
ALA
91
A
GLU
92
n
92
GLU
92
A
VAL
93
n
93
VAL
93
A
VAL
94
n
94
VAL
94
A
PHE
95
n
95
PHE
95
A
THR
96
n
96
THR
96
A
ALA
97
n
97
ALA
97
A
ASN
98
n
98
ASN
98
A
ASP
99
n
99
ASP
99
A
SER
100
n
100
SER
100
A
GLY
101
n
101
GLY
101
A
PRO
102
n
102
PRO
102
A
ARG
103
n
103
ARG
103
A
ARG
104
n
104
ARG
104
A
TYR
105
n
105
TYR
105
A
THR
106
n
106
THR
106
A
ILE
107
n
107
ILE
107
A
ALA
108
n
108
ALA
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
PRO
113
n
113
PRO
113
A
TYR
114
n
114
TYR
114
A
SER
115
n
115
SER
115
A
TYR
116
n
116
TYR
116
A
SER
117
n
117
SER
117
A
THR
118
n
118
THR
118
A
THR
119
n
119
THR
119
A
ALA
120
n
120
ALA
120
A
VAL
121
n
121
VAL
121
A
VAL
122
n
122
VAL
122
A
THR
123
n
123
THR
123
A
ASN
124
n
124
ASN
124
A
PRO
125
n
125
PRO
125
A
n
126
126
A
n
127
127
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
CYS
10
n
10
CYS
10
B
PRO
11
n
11
PRO
11
B
LEU
12
n
12
LEU
12
B
MET
13
n
13
MET
13
B
VAL
14
n
14
VAL
14
B
LYS
15
n
15
LYS
15
B
VAL
16
n
16
VAL
16
B
LEU
17
n
17
LEU
17
B
ASP
18
n
18
ASP
18
B
ALA
19
n
19
ALA
19
B
VAL
20
n
20
VAL
20
B
ARG
21
n
21
ARG
21
B
GLY
22
n
22
GLY
22
B
SER
23
n
23
SER
23
B
PRO
24
n
24
PRO
24
B
ALA
25
n
25
ALA
25
B
ILE
26
n
26
ILE
26
B
ASN
27
n
27
ASN
27
B
VAL
28
n
28
VAL
28
B
ALA
29
n
29
ALA
29
B
VAL
30
n
30
VAL
30
B
HIS
31
n
31
HIS
31
B
VAL
32
n
32
VAL
32
B
PHE
33
n
33
PHE
33
B
ARG
34
n
34
ARG
34
B
LYS
35
n
35
LYS
35
B
ALA
36
n
36
ALA
36
B
ALA
37
n
37
ALA
37
B
ASP
38
n
38
ASP
38
B
ASP
39
n
39
ASP
39
B
THR
40
n
40
THR
40
B
TRP
41
n
41
TRP
41
B
GLU
42
n
42
GLU
42
B
PRO
43
n
43
PRO
43
B
PHE
44
n
44
PHE
44
B
ALA
45
n
45
ALA
45
B
SER
46
n
46
SER
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
THR
49
n
49
THR
49
B
SER
50
n
50
SER
50
B
GLU
51
n
51
GLU
51
B
SER
52
n
52
SER
52
B
GLY
53
n
53
GLY
53
B
GLU
54
n
54
GLU
54
B
LEU
55
n
55
LEU
55
B
HIS
56
n
56
HIS
56
B
GLY
57
n
57
GLY
57
B
LEU
58
n
58
LEU
58
B
THR
59
n
59
THR
59
B
THR
60
n
60
THR
60
B
GLU
61
n
61
GLU
61
B
GLU
62
n
62
GLU
62
B
GLU
63
n
63
GLU
63
B
PHE
64
n
64
PHE
64
B
VAL
65
n
65
VAL
65
B
GLU
66
n
66
GLU
66
B
GLY
67
n
67
GLY
67
B
ILE
68
n
68
ILE
68
B
TYR
69
n
69
TYR
69
B
LYS
70
n
70
LYS
70
B
VAL
71
n
71
VAL
71
B
GLU
72
n
72
GLU
72
B
ILE
73
n
73
ILE
73
B
ASP
74
n
74
ASP
74
B
THR
75
n
75
THR
75
B
LYS
76
n
76
LYS
76
B
SER
77
n
77
SER
77
B
TYR
78
n
78
TYR
78
B
TRP
79
n
79
TRP
79
B
LYS
80
n
80
LYS
80
B
ALA
81
n
81
ALA
81
B
LEU
82
n
82
LEU
82
B
GLY
83
n
83
GLY
83
B
ILE
84
n
84
ILE
84
B
SER
85
n
85
SER
85
B
PRO
86
n
86
PRO
86
B
PHE
87
n
87
PHE
87
B
HIS
88
n
88
HIS
88
B
GLU
89
n
89
GLU
89
B
HIS
90
n
90
HIS
90
B
ALA
91
n
91
ALA
91
B
GLU
92
n
92
GLU
92
B
VAL
93
n
93
VAL
93
B
VAL
94
n
94
VAL
94
B
PHE
95
n
95
PHE
95
B
THR
96
n
96
THR
96
B
ALA
97
n
97
ALA
97
B
ASN
98
n
98
ASN
98
B
ASP
99
n
99
ASP
99
B
SER
100
n
100
SER
100
B
GLY
101
n
101
GLY
101
B
PRO
102
n
102
PRO
102
B
ARG
103
n
103
ARG
103
B
ARG
104
n
104
ARG
104
B
TYR
105
n
105
TYR
105
B
THR
106
n
106
THR
106
B
ILE
107
n
107
ILE
107
B
ALA
108
n
108
ALA
108
B
ALA
109
n
109
ALA
109
B
LEU
110
n
110
LEU
110
B
LEU
111
n
111
LEU
111
B
SER
112
n
112
SER
112
B
PRO
113
n
113
PRO
113
B
TYR
114
n
114
TYR
114
B
SER
115
n
115
SER
115
B
TYR
116
n
116
TYR
116
B
SER
117
n
117
SER
117
B
THR
118
n
118
THR
118
B
THR
119
n
119
THR
119
B
ALA
120
n
120
ALA
120
B
VAL
121
n
121
VAL
121
B
VAL
122
n
122
VAL
122
B
THR
123
n
123
THR
123
B
ASN
124
n
124
ASN
124
B
n
125
125
B
n
126
126
B
n
127
127
B
author_and_software_defined_assembly
PISA
4
tetrameric
6080
-46
18230
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
23
A
O
SER
23
A
N
ASP
18
A
N
ASP
18
A
N
MET
13
A
N
MET
13
A
O
ILE
107
A
O
ILE
107
A
N
ALA
108
A
N
ALA
108
A
O
THR
119
A
O
THR
119
A
N
TYR
116
A
N
TYR
116
B
O
THR
118
B
O
THR
118
B
O
THR
119
B
O
THR
119
B
N
ALA
108
B
N
ALA
108
B
O
ILE
107
B
O
ILE
107
B
N
MET
13
B
N
MET
13
B
N
ASP
18
B
N
ASP
18
B
O
SER
23
B
O
SER
23
A
O
LEU
55
A
O
LEU
55
A
N
VAL
14
A
N
VAL
14
A
N
MET
13
A
N
MET
13
A
O
ILE
107
A
O
ILE
107
A
N
ALA
108
A
N
ALA
108
A
O
THR
119
A
O
THR
119
A
N
TYR
116
A
N
TYR
116
B
O
THR
118
B
O
THR
118
B
O
THR
119
B
O
THR
119
B
N
ALA
108
B
N
ALA
108
B
O
ILE
107
B
O
ILE
107
B
N
MET
13
B
N
MET
13
B
N
VAL
14
B
N
VAL
14
B
O
LEU
55
B
O
LEU
55
A
O
ALA
45
A
O
ALA
45
A
N
VAL
32
A
N
VAL
32
A
N
HIS
31
A
N
HIS
31
A
O
GLU
72
A
O
GLU
72
A
N
ILE
73
A
N
ILE
73
A
O
ALA
91
A
O
ALA
91
A
N
VAL
94
A
N
VAL
94
B
O
GLU
89
B
O
GLU
89
B
O
ALA
91
B
O
ALA
91
B
N
ILE
73
B
N
ILE
73
B
O
GLU
72
B
O
GLU
72
B
N
HIS
31
B
N
HIS
31
B
N
VAL
32
B
N
VAL
32
B
O
ALA
45
B
O
ALA
45
1
A
HOH
221
C
HOH
1
B
HOH
211
D
HOH
1
A
GLY
1
A
GLY
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
GLY
4
A
GLY
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
GLY
6
A
GLY
6
1
Y
1
A
GLU
7
A
GLU
7
1
Y
1
A
SER
8
A
SER
8
1
Y
1
A
LYS
9
A
LYS
9
1
Y
1
A
LYS
126
A
LYS
126
1
Y
1
A
GLU
127
A
GLU
127
1
Y
1
B
GLY
1
B
GLY
1
1
Y
1
B
PRO
2
B
PRO
2
1
Y
1
B
THR
3
B
THR
3
1
Y
1
B
GLY
4
B
GLY
4
1
Y
1
B
THR
5
B
THR
5
1
Y
1
B
GLY
6
B
GLY
6
1
Y
1
B
GLU
7
B
GLU
7
1
Y
1
B
SER
8
B
SER
8
1
Y
1
B
LYS
9
B
LYS
9
1
Y
1
B
PRO
125
B
PRO
125
1
Y
1
B
LYS
126
B
LYS
126
1
Y
1
B
GLU
127
B
GLU
127
1
Y
1
B
B
OD1
O
ASN
HOH
27
257
2.09
A
1
B
B
OD1
O
ASN
HOH
124
246
2.12
1
A
A
OH
O
TYR
HOH
116
292
2.13
1
A
A
O
O
HOH
HOH
202
288
2.14
1
B
A
OH
O
TYR
HOH
116
292
2.16
1
5.73
0.90
118.30
124.03
A
A
A
CB
CG
OD1
ASP
ASP
ASP
18
18
18
N
1
-7.85
0.90
118.30
110.45
A
A
A
CB
CG
OD2
ASP
ASP
ASP
18
18
18
N
1
19.29
2.70
111.00
130.29
A
A
A
N
CA
C
ALA
ALA
ALA
37
37
37
N
1
A
A
O
O
HOH
HOH
283
288
2.10
1_555
4_556
1
A
A
O
O
HOH
HOH
234
290
2.10
1_555
4_556
1
A
A
OE1
O
GLU
HOH
51
279
2.11
B
1_555
4_556
1
B
B
OE2
O
GLU
HOH
62
252
2.13
A
1_555
4_555
1
A
ASP
38
A
108.02
-45.04
1
A
ASP
38
B
108.11
-50.10
1
B
ASP
38
-79.17
25.76
1
B
ASP
39
B
31.51
44.70
1
B
PHE
44
-133.79
-45.58
1
B
HIS
90
B
-171.24
-178.57
1
B
ASN
98
24.61
-170.15
1
B
ARG
103
87.62
125.52
113.650
29.4994
11.150
-0.4400
0.0000
-0.0000
-0.5000
-0.0000
0.9400
0.9610
0.9270
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
0.2354
0.1796
0.1823
1.9000
21.8500
909
17746
5.1000
96.3700
0.2105
0.1644
1.000
0.010
0.8385
4.0810
0.1190
0.1885
0.1686
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1890
0.1690
0.8000
0.8000
1.2000
PDB ENTRY 1TTA
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.9000
21.8500
149
1934
0
0
1785
0.019
0.019
2190
0.002
0.020
1979
2.030
1.932
3034
0.919
3.000
4599
6.999
5.000
296
33.430
23.592
103
17.616
15.000
344
20.137
15.000
13
0.122
0.200
324
0.009
0.021
2655
0.002
0.020
526
0.3440
0.2560
1.9490
71
1162
1233
20
92.7100
1.900
63.500
3W3B
17774
17774
0.057
0.057
1
19.900
3.200
97.000
0.302
0.254
1.900
2.000
2.800
7738
2460
0.162
0.302
0.254
1
3.200
3.100
93.700
0.196
0.165
2.000
2.120
4.300
7243
2327
0.104
0.196
0.165
1
5.300
3.100
94.000
0.148
0.124
2.120
2.270
5.400
6881
2214
0.080
0.148
0.124
1
8.100
3.100
95.400
0.125
0.105
2.270
2.450
6.500
6611
2126
0.067
0.125
0.105
1
10.200
3.100
96.800
0.095
0.080
2.450
2.690
8.500
6355
1991
0.052
0.095
0.080
1
15.400
3.200
98.800
0.074
0.062
2.690
3.000
10.900
6070
1848
0.040
0.074
0.062
1
23.600
3.300
99.700
0.056
0.047
3.000
3.470
12.900
5385
1638
0.031
0.056
0.047
1
35.800
3.300
99.700
0.049
0.041
3.470
4.250
13.800
4553
1419
0.027
0.049
0.041
1
48.900
3.200
99.900
0.042
0.035
4.250
6.010
14.900
3515
1102
0.023
0.042
0.035
1
54.500
3.200
99.800
0.034
0.028
6.010
21.849
16.300
1936
649
0.019
0.034
0.028
1
48.600
3.000
97.500
data reduction
Andrew G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
21/9/2006
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.25
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
Crystal structure of wild-type human transthyretin
1
N
N
1
N
N
2
N
N
2
N
N
A
ASP
74
A
ASP
74
HELX_P
A
LEU
82
A
LEU
82
1
1
9
B
ASP
74
B
ASP
74
HELX_P
B
LEU
82
B
LEU
82
1
2
9
TRANSPORT PROTEIN
amyloid, tranthyretin, TRANSPORT PROTEIN
A
ALA
37
A
ALA
37
1
A
ASP
38
A
ASP
38
12.39
A
ALA
37
A
ALA
37
1
A
ASP
38
A
ASP
38
14.04
B
ASN
98
B
ASN
98
1
B
ASP
99
B
ASP
99
9.66
B
ASP
99
B
ASP
99
1
B
SER
100
B
SER
100
15.79
B
PRO
102
B
PRO
102
1
B
ARG
103
B
ARG
103
-19.47
TTHY_HUMAN
UNP
1
21
P02766
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
21
147
3W3B
1
127
P02766
A
1
1
127
21
147
3W3B
1
127
P02766
B
1
1
127
8
8
8
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
23
A
SER
23
A
PRO
24
A
PRO
24
A
LEU
12
A
LEU
12
A
ASP
18
A
ASP
18
A
ARG
104
A
ARG
104
A
SER
112
A
SER
112
A
SER
115
A
SER
115
A
THR
123
A
THR
123
B
SER
115
B
SER
115
B
THR
123
B
THR
123
B
ARG
104
B
ARG
104
B
SER
112
B
SER
112
B
LEU
12
B
LEU
12
B
ASP
18
B
ASP
18
B
SER
23
B
SER
23
B
PRO
24
B
PRO
24
A
GLU
54
A
GLU
54
A
LEU
55
A
LEU
55
A
LEU
12
A
LEU
12
A
ASP
18
A
ASP
18
A
ARG
104
A
ARG
104
A
SER
112
A
SER
112
A
SER
115
A
SER
115
A
THR
123
A
THR
123
B
SER
115
B
SER
115
B
THR
123
B
THR
123
B
ARG
104
B
ARG
104
B
SER
112
B
SER
112
B
LEU
12
B
LEU
12
B
ASP
18
B
ASP
18
B
GLU
54
B
GLU
54
B
LEU
55
B
LEU
55
A
TRP
41
A
TRP
41
A
LYS
48
A
LYS
48
A
ALA
29
A
ALA
29
A
LYS
35
A
LYS
35
A
GLY
67
A
GLY
67
A
ILE
73
A
ILE
73
A
ALA
91
A
ALA
91
A
ALA
97
A
ALA
97
B
HIS
88
B
HIS
88
B
ALA
97
B
ALA
97
B
GLY
67
B
GLY
67
B
ILE
73
B
ILE
73
B
ALA
29
B
ALA
29
B
LYS
35
B
LYS
35
B
TRP
41
B
TRP
41
B
LYS
48
B
LYS
48
18
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