0.017813 0.000000 0.000000 0.000000 0.006120 0.000000 0.000000 0.000000 0.025208 0.00000 0.00000 0.00000 Gao, X.P. Waltersperger, S. Wang, M.T. Cui, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 56.140 163.400 39.670 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N N Y 273 N C Y 274 N C Y 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N O N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 S C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N C N 340 N C N 341 N C N 342 N N N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N S N 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C N 407 N C N 408 N C N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N O N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 R C N 438 N O N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C N 461 N O N 462 N O N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N N N 475 S C N 476 N C N 477 N O N 478 N C N 479 N C N 480 N C N 481 N O N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing Y 276 N sing Y 277 N doub Y 278 N doub N 279 N sing Y 280 N sing N 281 N sing Y 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N doub N 389 N sing Y 390 N doub N 391 N sing Y 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N doub N 449 N sing N 450 N sing N 451 N sing N 452 N sing Y 453 N doub Y 454 N sing Y 455 N sing N 456 N sing Y 457 N doub N 458 N sing Y 459 N doub N 460 N sing Y 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 41 10529 10541 10.1093/nar/gkt748 23985969 Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes 2013 10.2210/pdb3w3c/pdb pdb_00003w3c 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-12-12 ADSC QUANTUM 315r double crystal SINGLE WAVELENGTH M x-ray 1 1.54001 1.0 BL17U SSRF 1.54001 SYNCHROTRON SSRF BEAMLINE BL17U 16254.703 Virulence regulon transcriptional activator VirB UNP residues 129-250 1 man polymer 8097.236 DNA (26-MER) 1 syn polymer 7875.119 DNA (26-MER) 1 syn polymer 18.015 water 70 nat water Cell invasion regulator InvE no no MGSSHHHHHHSSGLVPRGSHMAKEHSIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASE LNFNDYKILFNYYKGLEKANESLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN MGSSHHHHHHSSGLVPRGSHMAKEHSIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASE LNFNDYKILFNYYKGLEKANESLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN A polypeptide(L) no no (DT)(DT)(DT)(DG)(DT)(DG)(DG)(DG)(DA)(DT)(DT)(DT)(DC)(DA)(DT)(DG)(DA)(DT)(DG)(DA) (DA)(DA)(DC)(DG)(DA)(DG) TTTGTGGGATTTCATGATGAAACGAG B polydeoxyribonucleotide no no (DA)(DA)(DA)(DC)(DT)(DC)(DG)(DT)(DT)(DT)(DC)(DA)(DT)(DC)(DA)(DT)(DG)(DA)(DA)(DA) (DT)(DC)(DC)(DC)(DA)(DC) AAACTCGTTTCATCATGAAATCCCAC C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 301 sample virB 42897 Shigella flexneri 2a 562 Escherichia coli Rosetta DE3 Plasmid pET-28a 1 2.82 56.43 VAPOR DIFFUSION 4.3 0.1M MgCl2, 0.1M Sodium Acetate, 30% PEG400, 8%(v/v)1,3-Butanediol, pH 4.3, VAPOR DIFFUSION, temperature 295K 295 -11.676 1 19 B 4 C 26 8.736 B_DG4:DC26_C 1 -14.897 -0.966 -0.244 -0.151 -1.730 1 20 B 5 C 25 -3.038 B_DT5:DA25_C 2 -16.329 -0.218 0.293 -0.178 -7.477 1 19 B 6 C 24 1.303 B_DG6:DC24_C 3 -7.552 -0.554 -0.283 -0.213 14.193 1 19 B 7 C 23 3.880 B_DG7:DC23_C 4 -6.125 -0.096 0.232 -0.128 9.663 1 19 B 8 C 22 0.497 B_DG8:DC22_C 5 -16.090 0.041 0.345 0.020 -5.704 1 20 B 9 C 21 -0.593 B_DA9:DT21_C 6 -16.929 0.058 0.139 -0.114 -1.446 1 20 B 10 C 20 0.934 B_DT10:DA20_C 7 -19.632 -0.045 0.366 -0.041 -6.315 1 20 B 11 C 19 0.423 B_DT11:DA19_C 8 -20.656 -0.270 0.098 -0.178 -13.114 1 20 B 12 C 18 -0.604 B_DT12:DA18_C 9 -31.173 -0.068 0.166 -0.044 -21.830 1 19 B 13 C 17 0.109 B_DC13:DG17_C 10 -5.894 0.179 0.494 -0.140 -0.914 1 20 B 14 C 16 4.264 B_DA14:DT16_C 11 -13.614 0.087 0.263 0.030 -2.051 1 20 B 15 C 15 5.025 B_DT15:DA15_C 12 -18.726 -0.231 -0.046 -0.027 -3.724 1 19 B 16 C 14 3.397 B_DG16:DC14_C 13 -10.241 -0.204 -0.283 -0.068 1.932 1 20 B 17 C 13 2.614 B_DA17:DT13_C 14 -13.659 0.108 0.177 -0.064 0.997 1 20 B 18 C 12 2.319 B_DT18:DA12_C 15 -10.429 -0.025 0.129 -0.211 2.558 1 19 B 19 C 11 1.818 B_DG19:DC11_C 16 -3.389 -0.577 -0.245 -0.375 -9.714 1 20 B 20 C 10 -0.313 B_DA20:DT10_C 17 -20.375 0.522 -0.358 -0.132 -4.193 1 20 B 21 C 9 -2.668 B_DA21:DT9_C 18 -13.156 -0.469 -0.022 -0.133 -7.372 B 22 C 8 10.857 B_DA22:DT8_C 19 -12.435 1.081 -0.520 0.125 -1.819 1 19 B 23 C 7 -0.004 B_DC23:DG7_C 20 -14.091 0.329 0.361 -0.211 3.492 1 19 B 24 C 6 -5.292 B_DG24:DC6_C 21 -22.800 0.214 0.032 0.038 1.912 1 20 B 25 C 5 4.468 B_DA25:DT5_C 22 -12.724 -0.400 0.179 -0.143 -1.715 1 19 B 26 C 4 -3.552 B_DG26:DC4_C 23 -18.540 0.494 0.805 0.136 3.207 33.788 B B 4 5 0.662 C C 26 25 3.109 0.381 -0.795 -0.074 BB_DG4DT5:DA25DC26_CC 1 -7.873 13.664 32.882 -0.187 0.120 3.325 43.899 B B 5 6 -6.837 C C 25 24 3.540 -5.097 0.091 1.734 BB_DT5DG6:DC24DA25_CC 2 3.052 -4.094 43.515 2.829 0.183 2.614 26.827 B B 6 7 19.027 C C 24 23 2.767 8.645 0.539 0.293 BB_DG6DG7:DC23DC24_CC 3 -3.784 8.327 25.141 -1.267 -1.991 3.457 37.983 B B 7 8 1.228 C C 23 22 3.390 0.798 -0.913 0.128 BB_DG7DG8:DC22DC23_CC 4 -3.333 5.128 37.833 0.091 0.957 3.565 42.148 B B 8 9 -1.404 C C 22 21 3.557 -1.009 -0.312 -0.345 BB_DG8DA9:DT21DC22_CC 5 -0.104 0.145 42.136 -0.366 0.423 3.263 32.714 B B 9 10 -12.817 C C 21 20 3.141 -7.157 -0.211 -0.878 BB_DA9DT10:DA20DT21_CC 6 -2.441 4.370 31.852 -0.331 -0.044 3.231 38.336 B B 10 11 -5.270 C C 20 19 3.242 -3.451 0.063 -0.115 BB_DT10DT11:DA19DA20_CC 7 3.798 -5.800 38.004 0.254 0.376 3.324 39.604 B B 11 12 -0.093 C C 19 18 3.324 -0.063 -0.345 0.097 BB_DT11DT12:DA18DA19_CC 8 -0.044 0.065 39.604 0.150 0.504 3.537 39.577 B B 12 13 0.059 C C 18 17 3.574 0.040 0.729 0.768 BB_DT12DC13:DG17DA18_CC 9 -1.896 2.801 39.533 1.129 -1.318 2.952 31.879 B B 13 14 22.549 C C 17 16 2.837 12.088 0.063 0.856 BB_DC13DA14:DT16DG17_CC 10 1.035 -1.930 29.536 -0.469 0.059 3.269 29.258 B B 14 15 4.397 C C 16 15 3.349 2.217 -0.043 -0.772 BB_DA14DT15:DA15DT16_CC 11 2.300 -4.562 29.087 -2.016 0.590 3.575 39.648 B B 15 16 3.525 C C 15 14 3.483 2.388 0.557 1.220 BB_DT15DG16:DC14DA15_CC 12 2.542 -3.752 39.500 1.497 -0.501 3.172 35.424 B B 16 17 3.285 C C 14 13 3.115 1.989 -0.617 0.054 BB_DG16DA17:DT13DC14_CC 13 -6.016 9.937 34.871 -0.195 0.157 3.449 32.638 B B 17 18 -1.750 C C 13 12 3.433 -0.983 0.194 -0.613 BB_DA17DT18:DA12DT13_CC 14 -0.023 0.041 32.624 -0.912 -0.350 3.148 27.600 B B 18 19 16.646 C C 12 11 3.304 7.834 0.257 -0.118 BB_DT18DG19:DC11DA12_CC 15 1.199 -2.548 26.459 -2.172 -0.245 3.653 41.476 B B 19 20 0.189 C C 11 10 3.622 0.134 -0.787 0.258 BB_DG19DA20:DT10DC11_CC 16 -1.897 2.680 41.434 0.348 0.887 2.904 30.599 B B 20 21 4.516 C C 10 9 2.946 2.377 -0.098 -0.400 BB_DA20DA21:DT9DT10_CC 17 -2.924 5.554 30.371 -1.180 -0.334 3.475 41.321 B B 21 22 -7.340 C C 9 8 3.479 -5.157 0.191 -0.177 BB_DA21DA22:DT8DT9_CC 18 4.727 -6.729 40.750 0.342 0.273 2.394 30.878 B B 22 23 30.510 C C 8 7 3.007 15.472 -0.367 -0.487 BB_DA22DC23:DG7DT8_CC 19 -4.629 9.127 26.407 -3.602 -0.115 3.242 37.007 B B 23 24 9.593 C C 7 6 3.350 6.057 -0.290 -0.202 BB_DC23DG24:DC6DG7_CC 20 3.097 -4.905 36.398 -1.146 0.880 3.305 30.186 B B 24 25 1.699 C C 6 5 3.324 0.884 0.293 -0.007 BB_DG24DA25:DT5DC6_CC 21 -1.444 2.773 30.139 -0.197 -0.861 3.242 37.342 B B 25 26 1.816 C C 5 4 3.332 1.156 0.117 -0.365 BB_DA25DG26:DC4DT5_CC 22 -7.098 11.151 36.668 -0.724 -1.133 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Database references Database references Data collection Database references Refinement description 1 0 2013-09-04 1 1 2013-12-11 1 2 2013-12-25 1 3 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details PDBJ Y PDBJ 2012-12-19 REL REL HOH water synthetic DNA sample synthetic DNA sample 3VWB PDB entry: 3VWB PDB experimental model HOH 1 4 HOH HOH 301 A HOH 2 4 HOH HOH 302 A HOH 4 4 HOH HOH 303 A HOH 6 4 HOH HOH 304 A HOH 7 4 HOH HOH 305 A HOH 8 4 HOH HOH 306 A HOH 9 4 HOH HOH 307 A HOH 10 4 HOH HOH 308 A HOH 12 4 HOH HOH 309 A HOH 14 4 HOH HOH 310 A HOH 15 4 HOH HOH 311 A HOH 16 4 HOH HOH 312 A HOH 20 4 HOH HOH 313 A HOH 27 4 HOH HOH 314 A HOH 30 4 HOH HOH 315 A HOH 31 4 HOH HOH 316 A HOH 32 4 HOH HOH 317 A HOH 38 4 HOH HOH 318 A HOH 39 4 HOH HOH 319 A HOH 40 4 HOH HOH 320 A HOH 41 4 HOH HOH 321 A HOH 47 4 HOH HOH 322 A HOH 48 4 HOH HOH 323 A HOH 49 4 HOH HOH 324 A HOH 50 4 HOH HOH 325 A HOH 52 4 HOH HOH 326 A HOH 53 4 HOH HOH 327 A HOH 54 4 HOH HOH 328 A HOH 55 4 HOH HOH 329 A HOH 56 4 HOH HOH 330 A HOH 60 4 HOH HOH 331 A HOH 62 4 HOH HOH 332 A HOH 63 4 HOH HOH 333 A HOH 65 4 HOH HOH 334 A HOH 66 4 HOH HOH 335 A HOH 70 4 HOH HOH 336 A HOH 69 4 HOH HOH 337 A HOH 5 4 HOH HOH 101 B HOH 11 4 HOH HOH 102 B HOH 17 4 HOH HOH 103 B HOH 21 4 HOH HOH 104 B HOH 23 4 HOH HOH 105 B HOH 25 4 HOH HOH 106 B HOH 26 4 HOH HOH 107 B HOH 29 4 HOH HOH 108 B HOH 33 4 HOH HOH 109 B HOH 34 4 HOH HOH 110 B HOH 37 4 HOH HOH 111 B HOH 43 4 HOH HOH 112 B HOH 44 4 HOH HOH 113 B HOH 46 4 HOH HOH 114 B HOH 51 4 HOH HOH 115 B HOH 57 4 HOH HOH 116 B HOH 58 4 HOH HOH 117 B HOH 61 4 HOH HOH 118 B HOH 64 4 HOH HOH 119 B HOH 3 4 HOH HOH 101 C HOH 13 4 HOH HOH 102 C HOH 18 4 HOH HOH 103 C HOH 19 4 HOH HOH 104 C HOH 22 4 HOH HOH 105 C HOH 24 4 HOH HOH 106 C HOH 28 4 HOH HOH 107 C HOH 35 4 HOH HOH 108 C HOH 36 4 HOH HOH 109 C HOH 42 4 HOH HOH 110 C HOH 45 4 HOH HOH 111 C HOH 59 4 HOH HOH 112 C HOH 67 4 HOH HOH 113 C HOH 68 4 HOH HOH 114 C n 1 108 A n 2 109 A n 3 110 A n 4 111 A n 5 112 A n 6 113 A n 7 114 A n 8 115 A n 9 116 A n 10 117 A n 11 118 A n 12 119 A n 13 120 A n 14 121 A n 15 122 A n 16 123 A n 17 124 A n 18 125 A n 19 126 A n 20 127 A n 21 128 A n 22 129 A n 23 130 A GLU 131 n 24 GLU 131 A HIS 132 n 25 HIS 132 A SER 133 n 26 SER 133 A ILE 134 n 27 ILE 134 A ARG 135 n 28 ARG 135 A GLU 136 n 29 GLU 136 A LEU 137 n 30 LEU 137 A GLY 138 n 31 GLY 138 A ILE 139 n 32 ILE 139 A GLY 140 n 33 GLY 140 A LEU 141 n 34 LEU 141 A ASN 142 n 35 ASN 142 A PHE 143 n 36 PHE 143 A LEU 144 n 37 LEU 144 A LYS 145 n 38 LYS 145 A VAL 146 n 39 VAL 146 A SER 147 n 40 SER 147 A GLY 148 n 41 GLY 148 A MET 149 n 42 MET 149 A SER 150 n 43 SER 150 A TYR 151 n 44 TYR 151 A LYS 152 n 45 LYS 152 A ASP 153 n 46 ASP 153 A ILE 154 n 47 ILE 154 A ALA 155 n 48 ALA 155 A LYS 156 n 49 LYS 156 A LYS 157 n 50 LYS 157 A GLU 158 n 51 GLU 158 A ASN 159 n 52 ASN 159 A LEU 160 n 53 LEU 160 A SER 161 n 54 SER 161 A ARG 162 n 55 ARG 162 A ALA 163 n 56 ALA 163 A LYS 164 n 57 LYS 164 A VAL 165 n 58 VAL 165 A THR 166 n 59 THR 166 A ARG 167 n 60 ARG 167 A ALA 168 n 61 ALA 168 A PHE 169 n 62 PHE 169 A GLN 170 n 63 GLN 170 A ALA 171 n 64 ALA 171 A ALA 172 n 65 ALA 172 A SER 173 n 66 SER 173 A VAL 174 n 67 VAL 174 A PRO 175 n 68 PRO 175 A GLN 176 n 69 GLN 176 A GLU 177 n 70 GLU 177 A ILE 178 n 71 ILE 178 A ILE 179 n 72 ILE 179 A SER 180 n 73 SER 180 A LEU 181 n 74 LEU 181 A PHE 182 n 75 PHE 182 A PRO 183 n 76 PRO 183 A ILE 184 n 77 ILE 184 A ALA 185 n 78 ALA 185 A SER 186 n 79 SER 186 A GLU 187 n 80 GLU 187 A LEU 188 n 81 LEU 188 A ASN 189 n 82 ASN 189 A PHE 190 n 83 PHE 190 A ASN 191 n 84 ASN 191 A ASP 192 n 85 ASP 192 A TYR 193 n 86 TYR 193 A LYS 194 n 87 LYS 194 A ILE 195 n 88 ILE 195 A LEU 196 n 89 LEU 196 A PHE 197 n 90 PHE 197 A ASN 198 n 91 ASN 198 A TYR 199 n 92 TYR 199 A TYR 200 n 93 TYR 200 A LYS 201 n 94 LYS 201 A GLY 202 n 95 GLY 202 A LEU 203 n 96 LEU 203 A GLU 204 n 97 GLU 204 A LYS 205 n 98 LYS 205 A ALA 206 n 99 ALA 206 A ASN 207 n 100 ASN 207 A GLU 208 n 101 GLU 208 A SER 209 n 102 SER 209 A LEU 210 n 103 LEU 210 A SER 211 n 104 SER 211 A SER 212 n 105 SER 212 A THR 213 n 106 THR 213 A LEU 214 n 107 LEU 214 A PRO 215 n 108 PRO 215 A ILE 216 n 109 ILE 216 A LEU 217 n 110 LEU 217 A LYS 218 n 111 LYS 218 A GLU 219 n 112 GLU 219 A GLU 220 n 113 GLU 220 A ILE 221 n 114 ILE 221 A LYS 222 n 115 LYS 222 A ASP 223 n 116 ASP 223 A LEU 224 n 117 LEU 224 A ASP 225 n 118 ASP 225 A THR 226 n 119 THR 226 A ASN 227 n 120 ASN 227 A LEU 228 n 121 LEU 228 A PRO 229 n 122 PRO 229 A PRO 230 n 123 PRO 230 A ASP 231 n 124 ASP 231 A ILE 232 n 125 ILE 232 A TYR 233 n 126 TYR 233 A LYS 234 n 127 LYS 234 A LYS 235 n 128 LYS 235 A GLU 236 n 129 GLU 236 A ILE 237 n 130 ILE 237 A LEU 238 n 131 LEU 238 A ASN 239 n 132 ASN 239 A ILE 240 n 133 ILE 240 A ILE 241 n 134 ILE 241 A LYS 242 n 135 LYS 242 A LYS 243 n 136 LYS 243 A SER 244 n 137 SER 244 A LYS 245 n 138 LYS 245 A ASN 246 n 139 ASN 246 A n 140 247 A n 141 248 A n 142 249 A n 143 250 A DT 1 n 1 DT 1 B DT 2 n 2 DT 2 B DT 3 n 3 DT 3 B DG 4 n 4 DG 4 B DT 5 n 5 DT 5 B DG 6 n 6 DG 6 B DG 7 n 7 DG 7 B DG 8 n 8 DG 8 B DA 9 n 9 DA 9 B DT 10 n 10 DT 10 B DT 11 n 11 DT 11 B DT 12 n 12 DT 12 B DC 13 n 13 DC 13 B DA 14 n 14 DA 14 B DT 15 n 15 DT 15 B DG 16 n 16 DG 16 B DA 17 n 17 DA 17 B DT 18 n 18 DT 18 B DG 19 n 19 DG 19 B DA 20 n 20 DA 20 B DA 21 n 21 DA 21 B DA 22 n 22 DA 22 B DC 23 n 23 DC 23 B DG 24 n 24 DG 24 B DA 25 n 25 DA 25 B DG 26 n 26 DG 26 B DA 1 n 1 DA 1 C DA 2 n 2 DA 2 C DA 3 n 3 DA 3 C DC 4 n 4 DC 4 C DT 5 n 5 DT 5 C DC 6 n 6 DC 6 C DG 7 n 7 DG 7 C DT 8 n 8 DT 8 C DT 9 n 9 DT 9 C DT 10 n 10 DT 10 C DC 11 n 11 DC 11 C DA 12 n 12 DA 12 C DT 13 n 13 DT 13 C DC 14 n 14 DC 14 C DA 15 n 15 DA 15 C DT 16 n 16 DT 16 C DG 17 n 17 DG 17 C DA 18 n 18 DA 18 C DA 19 n 19 DA 19 C DA 20 n 20 DA 20 C DT 21 n 21 DT 21 C DC 22 n 22 DC 22 C DC 23 n 23 DC 23 C DC 24 n 24 DC 24 C DA 25 n 25 DA 25 C DC 26 n 26 DC 26 C 0.0452 -0.0086 0.0505 0.0187 -0.0427 0.1317 -0.0433 -0.2066 -0.0088 0.0741 -0.0225 0.0760 -0.1410 -0.1382 -0.0045 0.2134 -0.0070 0.0321 0.4341 0.0333 0.2570 refined -30.1676 -30.8138 32.8952 X-RAY DIFFRACTION 0.0767 -0.0320 0.0279 0.2150 -0.0283 0.1508 0.0489 0.2339 0.0360 0.0940 -0.1034 0.0714 -0.2245 0.0617 -0.1212 0.1886 -0.0668 -0.0444 0.3965 0.0892 0.1426 refined -20.5265 -25.2779 31.9355 X-RAY DIFFRACTION 0.3417 -0.1092 -0.1646 0.0424 0.0678 0.1070 -0.1812 0.0068 -0.0742 -0.0031 0.0561 -0.0994 -0.0309 0.1742 -0.2113 0.2558 -0.0903 -0.1154 0.4915 0.0951 0.2456 refined -6.3790 -23.1483 38.2605 X-RAY DIFFRACTION 0.0055 0.0202 0.0100 0.0680 0.0327 0.0156 -0.0052 0.0018 -0.0056 0.0102 0.0043 0.0006 0.0075 0.0101 0.0004 1.2574 -0.1141 0.1041 1.0956 -0.0338 1.4618 refined -0.2424 -29.7580 36.7095 X-RAY DIFFRACTION 0.1288 0.0779 0.1278 0.0794 0.1425 0.2878 -0.0574 -0.0632 -0.0399 -0.1581 -0.1709 -0.0479 0.0744 0.0254 -0.2007 0.3141 0.0009 0.0852 0.1477 0.0356 0.3095 refined -19.1836 -38.2599 19.3835 X-RAY DIFFRACTION 0.0597 0.0149 -0.0141 0.0127 -0.0173 0.0405 0.1139 -0.1299 0.1323 -0.0498 -0.1189 -0.0609 -0.0508 0.0958 0.0038 1.4484 -0.0338 0.0005 0.4092 0.1731 1.1304 refined -12.1932 3.0182 10.7374 X-RAY DIFFRACTION 0.0207 -0.0280 -0.0577 0.0710 0.0396 0.2715 0.0353 0.0062 0.0672 -0.0717 -0.0607 0.0491 0.0317 0.1147 0.0726 0.9445 -0.5108 0.0525 -0.1818 0.2574 1.1210 refined -13.9341 4.0738 11.9461 X-RAY DIFFRACTION 0.0639 -0.0678 -0.1058 0.0469 0.0882 0.1432 0.0401 0.0366 -0.1453 -0.2049 -0.1618 0.1048 0.0236 0.1785 0.0000 0.3682 -0.0059 0.0471 0.2461 0.0428 0.3462 refined -19.8440 -35.8061 20.5745 X-RAY DIFFRACTION A 131 A 156 X-RAY DIFFRACTION 1 (CHAIN A AND RESID 131:156) A 157 A 193 X-RAY DIFFRACTION 2 (CHAIN A AND RESID 157:193) A 194 A 242 X-RAY DIFFRACTION 3 (CHAIN A AND RESID 194:242) A 243 A 246 X-RAY DIFFRACTION 4 (CHAIN A AND RESID 243:246) B 1 B 19 X-RAY DIFFRACTION 5 (CHAIN B AND RESID 1:19) B 20 B 26 X-RAY DIFFRACTION 6 (CHAIN B AND RESID 20:26) C 1 C 12 X-RAY DIFFRACTION 7 (CHAIN C AND RESID 1:12) C 13 C 26 X-RAY DIFFRACTION 8 (CHAIN C AND RESID 13:26) author_and_software_defined_assembly PISA 3 trimeric 3490 -29 15810 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CB HIS 132 A CB HIS 25 0 Y 1 A CG HIS 132 A CG HIS 25 0 Y 1 A ND1 HIS 132 A ND1 HIS 25 0 Y 1 A CD2 HIS 132 A CD2 HIS 25 0 Y 1 A CE1 HIS 132 A CE1 HIS 25 0 Y 1 A NE2 HIS 132 A NE2 HIS 25 0 Y 1 A MET 108 A MET 1 1 Y 1 A GLY 109 A GLY 2 1 Y 1 A SER 110 A SER 3 1 Y 1 A SER 111 A SER 4 1 Y 1 A HIS 112 A HIS 5 1 Y 1 A HIS 113 A HIS 6 1 Y 1 A HIS 114 A HIS 7 1 Y 1 A HIS 115 A HIS 8 1 Y 1 A HIS 116 A HIS 9 1 Y 1 A HIS 117 A HIS 10 1 Y 1 A SER 118 A SER 11 1 Y 1 A SER 119 A SER 12 1 Y 1 A GLY 120 A GLY 13 1 Y 1 A LEU 121 A LEU 14 1 Y 1 A VAL 122 A VAL 15 1 Y 1 A PRO 123 A PRO 16 1 Y 1 A ARG 124 A ARG 17 1 Y 1 A GLY 125 A GLY 18 1 Y 1 A SER 126 A SER 19 1 Y 1 A HIS 127 A HIS 20 1 Y 1 A MET 128 A MET 21 1 Y 1 A ALA 129 A ALA 22 1 Y 1 A LYS 130 A LYS 23 1 Y 1 A ARG 247 A ARG 140 1 Y 1 A LYS 248 A LYS 141 1 Y 1 A GLN 249 A GLN 142 1 Y 1 A ASN 250 A ASN 143 1 Y 1 A A HZ3 O LYS HOH 194 327 1.56 1 A A O O HOH HOH 302 326 1.85 1 A B O O HOH HOH 324 103 1.89 1 A B O O HOH HOH 307 105 2.03 1 A A OG O SER HOH 244 304 2.04 1 A A OH O TYR HOH 193 325 2.13 1 2.31 0.30 108.30 110.61 B B B O4' C1' N9 DG DG DG 19 19 19 N 1 -6.51 0.80 102.40 95.89 C C C C3' C2' C1' DA DA DA 2 2 2 N 1 2.54 0.30 108.30 110.84 C C C O4' C1' N9 DA DA DA 2 2 2 N 1 A A OD2 O ASP HOH 153 320 1.96 1_555 4_447 1 A ASP 225 -55.21 105.80 1 A PRO 230 -94.83 -77.15 146.180 59.6660 10.370 11.0965 -0.0000 -0.0000 -7.1143 -0.0000 -3.9822 0.2797 0.2640 0.2647 2.431 40.850 694 13893 13893 5.00 96.31 1.000 0.000 0.7913 0.46 RANDOM 1 THROUGHOUT 1.88 MOLECULAR REPLACEMENT 26.7100 0.98 1.20 PDB entry: 3VWB ML FLAT BULK SOLVENT MODEL 30.720 0.325 2.431 40.850 70 2061 0 1060 931 0.002 2134 0.748 3101 0.036 351 0.003 212 25.488 882 0.3778 0.3532 2.6191 136 2583 2719 5 97.0000 0.3579 0.3181 2.8826 142 2686 2828 5 100.0000 0.2874 0.2910 3.2995 140 2695 2835 5 99.0000 0.2935 0.2843 4.1564 125 2367 2492 5 87.0000 0.2245 0.2058 40.8557 151 2868 3019 5 99.0000 46.6 2.43 40.85 3W3C 13931 13895 -3.0 -3.0 0.049 0.049 1 20.49 4.95 96.6 2.43 2.58 4.77 2174 0.254 1 3.97 95.8 data collection ADSC Quantum phasing PHASER for MR refinement PHENIX (phenix.refine: 1.7.3_928) data reduction XDS package data scaling XDS package Crystal structure of VirB core domain complexed with the cis-acting site upstream icsb promoter 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A SER 133 A SER 26 HELX_P A LEU 141 A LEU 34 1 1 9 A LEU 141 A LEU 34 HELX_P A VAL 146 A VAL 39 1 2 6 A SER 150 A SER 43 HELX_P A GLU 158 A GLU 51 1 3 9 A SER 161 A SER 54 HELX_P A SER 173 A SER 66 1 4 13 A PRO 175 A PRO 68 HELX_P A SER 180 A SER 73 1 5 6 A ILE 184 A ILE 77 HELX_P A LEU 188 A LEU 81 5 6 5 A ASN 189 A ASN 82 HELX_P A ALA 206 A ALA 99 1 7 18 A THR 213 A THR 106 HELX_P A LEU 224 A LEU 117 1 8 12 A ASP 231 A ASP 124 HELX_P A ASN 246 A ASN 139 1 9 16 hydrog WATSON-CRICK B DG 4 B N1 DG 4 1_555 C DC 26 C N3 DC 26 1_555 hydrog WATSON-CRICK B DG 4 B N2 DG 4 1_555 C DC 26 C O2 DC 26 1_555 hydrog WATSON-CRICK B DG 4 B O6 DG 4 1_555 C DC 26 C N4 DC 26 1_555 hydrog WATSON-CRICK B DT 5 B N3 DT 5 1_555 C DA 25 C N1 DA 25 1_555 hydrog WATSON-CRICK B DT 5 B O4 DT 5 1_555 C DA 25 C N6 DA 25 1_555 hydrog WATSON-CRICK B DG 6 B N1 DG 6 1_555 C DC 24 C N3 DC 24 1_555 hydrog WATSON-CRICK B DG 6 B N2 DG 6 1_555 C DC 24 C O2 DC 24 1_555 hydrog WATSON-CRICK B DG 6 B O6 DG 6 1_555 C DC 24 C N4 DC 24 1_555 hydrog WATSON-CRICK B DG 7 B N1 DG 7 1_555 C DC 23 C N3 DC 23 1_555 hydrog WATSON-CRICK B DG 7 B N2 DG 7 1_555 C DC 23 C O2 DC 23 1_555 hydrog WATSON-CRICK B DG 7 B O6 DG 7 1_555 C DC 23 C N4 DC 23 1_555 hydrog WATSON-CRICK B DG 8 B N1 DG 8 1_555 C DC 22 C N3 DC 22 1_555 hydrog WATSON-CRICK B DG 8 B N2 DG 8 1_555 C DC 22 C O2 DC 22 1_555 hydrog WATSON-CRICK B DG 8 B O6 DG 8 1_555 C DC 22 C N4 DC 22 1_555 hydrog WATSON-CRICK B DA 9 B N1 DA 9 1_555 C DT 21 C N3 DT 21 1_555 hydrog WATSON-CRICK B DA 9 B N6 DA 9 1_555 C DT 21 C O4 DT 21 1_555 hydrog WATSON-CRICK B DT 10 B N3 DT 10 1_555 C DA 20 C N1 DA 20 1_555 hydrog WATSON-CRICK B DT 10 B O4 DT 10 1_555 C DA 20 C N6 DA 20 1_555 hydrog WATSON-CRICK B DT 11 B N3 DT 11 1_555 C DA 19 C N1 DA 19 1_555 hydrog WATSON-CRICK B DT 11 B O4 DT 11 1_555 C DA 19 C N6 DA 19 1_555 hydrog WATSON-CRICK B DT 12 B N3 DT 12 1_555 C DA 18 C N1 DA 18 1_555 hydrog WATSON-CRICK B DT 12 B O4 DT 12 1_555 C DA 18 C N6 DA 18 1_555 hydrog WATSON-CRICK B DC 13 B N3 DC 13 1_555 C DG 17 C N1 DG 17 1_555 hydrog WATSON-CRICK B DC 13 B N4 DC 13 1_555 C DG 17 C O6 DG 17 1_555 hydrog WATSON-CRICK B DC 13 B O2 DC 13 1_555 C DG 17 C N2 DG 17 1_555 hydrog WATSON-CRICK B DA 14 B N1 DA 14 1_555 C DT 16 C N3 DT 16 1_555 hydrog WATSON-CRICK B DA 14 B N6 DA 14 1_555 C DT 16 C O4 DT 16 1_555 hydrog WATSON-CRICK B DT 15 B N3 DT 15 1_555 C DA 15 C N1 DA 15 1_555 hydrog WATSON-CRICK B DT 15 B O4 DT 15 1_555 C DA 15 C N6 DA 15 1_555 hydrog WATSON-CRICK B DG 16 B N1 DG 16 1_555 C DC 14 C N3 DC 14 1_555 hydrog WATSON-CRICK B DG 16 B N2 DG 16 1_555 C DC 14 C O2 DC 14 1_555 hydrog WATSON-CRICK B DG 16 B O6 DG 16 1_555 C DC 14 C N4 DC 14 1_555 hydrog WATSON-CRICK B DA 17 B N1 DA 17 1_555 C DT 13 C N3 DT 13 1_555 hydrog WATSON-CRICK B DA 17 B N6 DA 17 1_555 C DT 13 C O4 DT 13 1_555 hydrog WATSON-CRICK B DT 18 B N3 DT 18 1_555 C DA 12 C N1 DA 12 1_555 hydrog WATSON-CRICK B DT 18 B O4 DT 18 1_555 C DA 12 C N6 DA 12 1_555 hydrog WATSON-CRICK B DG 19 B N1 DG 19 1_555 C DC 11 C N3 DC 11 1_555 hydrog WATSON-CRICK B DG 19 B N2 DG 19 1_555 C DC 11 C O2 DC 11 1_555 hydrog WATSON-CRICK B DG 19 B O6 DG 19 1_555 C DC 11 C N4 DC 11 1_555 hydrog WATSON-CRICK B DA 20 B N1 DA 20 1_555 C DT 10 C N3 DT 10 1_555 hydrog WATSON-CRICK B DA 20 B N6 DA 20 1_555 C DT 10 C O4 DT 10 1_555 hydrog WATSON-CRICK B DA 21 B N1 DA 21 1_555 C DT 9 C N3 DT 9 1_555 hydrog WATSON-CRICK B DA 21 B N6 DA 21 1_555 C DT 9 C O4 DT 9 1_555 hydrog DA-DT PAIR B DA 22 B N1 DA 22 1_555 C DT 8 C N3 DT 8 1_555 hydrog WATSON-CRICK B DC 23 B N3 DC 23 1_555 C DG 7 C N1 DG 7 1_555 hydrog WATSON-CRICK B DC 23 B N4 DC 23 1_555 C DG 7 C O6 DG 7 1_555 hydrog WATSON-CRICK B DC 23 B O2 DC 23 1_555 C DG 7 C N2 DG 7 1_555 hydrog WATSON-CRICK B DG 24 B N1 DG 24 1_555 C DC 6 C N3 DC 6 1_555 hydrog WATSON-CRICK B DG 24 B N2 DG 24 1_555 C DC 6 C O2 DC 6 1_555 hydrog WATSON-CRICK B DG 24 B O6 DG 24 1_555 C DC 6 C N4 DC 6 1_555 hydrog WATSON-CRICK B DA 25 B N1 DA 25 1_555 C DT 5 C N3 DT 5 1_555 hydrog WATSON-CRICK B DA 25 B N6 DA 25 1_555 C DT 5 C O4 DT 5 1_555 hydrog DG-DA MISPAIR B DG 26 B O6 DG 26 1_555 C DA 3 C N6 DA 3 1_555 hydrog WATSON-CRICK B DG 26 B N1 DG 26 1_555 C DC 4 C N3 DC 4 1_555 hydrog WATSON-CRICK B DG 26 B N2 DG 26 1_555 C DC 4 C O2 DC 4 1_555 hydrog WATSON-CRICK B DG 26 B O6 DG 26 1_555 C DC 4 C N4 DC 4 1_555 TRANSCRIPTION/DNA HTH DNA binding motif, PROTEIN-DNA COMPLEX, ParB box-A like sequence, ParB like fold, transcriptional activator, sequence specific dsDNA binding, TRANSCRIPTION-DNA complex A THR 226 A THR 119 1 A ASN 227 A ASN 120 1.64 VIRB_SHIFL UNP 1 129 P0A247 AKEHSIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANE SLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN 3W3C PDB 2 3W3C 3W3C PDB 3 3W3C 129 250 3W3C 129 250 P0A247 A 1 22 143 1 26 3W3C 1 26 3W3C B 2 1 26 1 26 3W3C 1 26 3W3C C 3 1 26 1 expression tag MET 108 3W3C A P0A247 UNP 1 1 expression tag GLY 109 3W3C A P0A247 UNP 2 1 expression tag SER 110 3W3C A P0A247 UNP 3 1 expression tag SER 111 3W3C A P0A247 UNP 4 1 expression tag HIS 112 3W3C A P0A247 UNP 5 1 expression tag HIS 113 3W3C A P0A247 UNP 6 1 expression tag HIS 114 3W3C A P0A247 UNP 7 1 expression tag HIS 115 3W3C A P0A247 UNP 8 1 expression tag HIS 116 3W3C A P0A247 UNP 9 1 expression tag HIS 117 3W3C A P0A247 UNP 10 1 expression tag SER 118 3W3C A P0A247 UNP 11 1 expression tag SER 119 3W3C A P0A247 UNP 12 1 expression tag GLY 120 3W3C A P0A247 UNP 13 1 expression tag LEU 121 3W3C A P0A247 UNP 14 1 expression tag VAL 122 3W3C A P0A247 UNP 15 1 expression tag PRO 123 3W3C A P0A247 UNP 16 1 expression tag ARG 124 3W3C A P0A247 UNP 17 1 expression tag GLY 125 3W3C A P0A247 UNP 18 1 expression tag SER 126 3W3C A P0A247 UNP 19 1 expression tag HIS 127 3W3C A P0A247 UNP 20 1 expression tag MET 128 3W3C A P0A247 UNP 21 18 P 21 21 2