0.011056
0.006383
0.000000
0.000000
0.012766
0.000000
0.000000
0.000000
0.008126
0.00000
0.00000
0.00000
Inaoka, D.K.
Iida, M.
Tabuchi, T.
Lee, N.
Hashimoto, S.
Matsuoka, S.
Kuranaga, T.
Shiba, T.
Sakamoto, K.
Suzuki, S.
Balogun, E.O.
Nara, T.
Aoki, T.
Inoue, M.
Honma, T.
Tanaka, A.
Harada, S.
Kita, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
90.449
90.449
123.063
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C12 H27 N O
201.349
DECYLAMINE-N,N-DIMETHYL-N-OXIDE
non-polymer
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H4 N2 O4
156.096
OROTIC ACID
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C19 H16 N2 O4
336.341
2,6-dioxo-5-[2-(4-phenylphenyl)ethyl]-1,2,3,6- tetrahydropyrimidine-4-carboxylic acid
non-polymer
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
CL
N
82
N
N
N
83
N
O
N
84
N
C
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
C
N
134
N
C
Y
135
N
C
N
136
N
C
Y
137
N
C
Y
138
N
C
N
139
N
N
N
140
N
C
N
141
N
C
N
142
S
C
N
143
N
O
N
144
S
C
N
145
N
O
N
146
R
C
N
147
N
O
N
148
N
C
N
149
N
O
N
150
N
P
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
N
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
O
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
Y
243
N
C
Y
244
N
N
Y
245
N
C
Y
246
N
C
Y
247
N
N
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
S
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
N
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
S
N
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
Y
351
N
N
Y
352
N
C
N
353
N
O
Y
354
N
N
Y
355
N
C
N
356
N
O
Y
357
N
C
Y
358
N
C
N
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
S
N
421
N
O
N
422
N
O
N
423
N
O
N
424
N
O
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
R
C
N
430
N
O
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
N
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
N
480
N
O
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
N
N
494
S
C
N
495
N
C
N
496
N
O
N
497
N
C
N
498
N
C
N
499
N
C
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
O
N
513
N
C
N
514
N
O
N
515
N
C
N
516
N
N
N
517
N
C
N
518
N
O
N
519
N
N
N
520
N
C
N
521
N
O
N
522
N
C
N
523
N
C
N
524
N
C
Y
525
N
C
Y
526
N
C
Y
527
N
C
Y
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
Y
535
N
C
Y
536
N
C
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
Y
127
N
doub
Y
128
N
sing
Y
129
N
sing
N
130
N
sing
N
131
N
sing
Y
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
Y
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
Y
240
N
sing
Y
241
N
doub
Y
242
N
doub
N
243
N
sing
Y
244
N
sing
N
245
N
sing
Y
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
doub
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
Y
442
N
sing
N
443
N
sing
Y
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
Y
495
N
doub
Y
496
N
sing
Y
497
N
sing
Y
498
N
doub
Y
499
N
sing
Y
500
N
sing
Y
501
N
doub
N
502
N
sing
Y
503
N
doub
Y
504
N
doub
N
505
N
sing
Y
506
N
doub
Y
507
N
sing
N
508
N
sing
Y
509
N
sing
N
510
N
sing
N
511
N
doub
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
doub
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
doub
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
To be Published
0353
Structure of Human dihydroorotate dehydrogenase in complex with mii-4-097
10.2210/pdb3w7r/pdb
pdb_00003w7r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
77
1
CCD
2012-01-29
ADSC QUANTUM 315
SAGITALLY FOCUSED Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
BL-17A
Photon Factory
0.98
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-17A
42636.414
Dihydroorotate dehydrogenase (quinone), mitochondrial
1.3.5.2
UNP residues 29-395
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
201.349
DECYLAMINE-N,N-DIMETHYL-N-OXIDE
6
syn
non-polymer
336.341
2,6-dioxo-5-[2-(4-phenylphenyl)ethyl]-1,2,3,6- tetrahydropyrimidine-4-carboxylic acid
1
syn
non-polymer
456.344
FLAVIN MONONUCLEOTIDE
1
syn
non-polymer
92.094
GLYCEROL
22
syn
non-polymer
156.096
OROTIC ACID
1
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
59.044
ACETATE ION
7
syn
non-polymer
18.015
water
317
nat
water
DHOdehase, Dihydroorotate oxidase
no
no
MGHHHHHHHHHHSSGHIDDDDKHMATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGH
KFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQ
KQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRR
VHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQG
RVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR
MGHHHHHHHHHHSSGHIDDDDKHMATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGH
KFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQ
KQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRR
VHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQG
RVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PyrD
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)PyrD-
Plasmid
pET19b
1
3.41
63.91
VAPOR DIFFUSION, HANGING DROP
4.9
100mM SODIUM ACETATE, 1.8-1.9M AMMONIUM SULPHATE, 40mM C11DAO, 20.8mM DDAO, 2mM DIHYDROOROTATE, pH 4.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2014-03-12
1
1
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-097
PDBJ
Y
PDBJ
2013-03-06
REL
REL
CL
CHLORIDE ION
DDQ
DECYLAMINE-N,N-DIMETHYL-N-OXIDE
W7A
2,6-dioxo-5-[2-(4-phenylphenyl)ethyl]-1,2,3,6- tetrahydropyrimidine-4-carboxylic acid
FMN
FLAVIN MONONUCLEOTIDE
GOL
GLYCEROL
ORO
OROTIC ACID
SO4
SULFATE ION
ACT
ACETATE ION
HOH
water
3ZWS
PDB
experimental model
CL
1
2
CL
CL
401
A
DDQ
1
3
DDQ
DDQ
402
A
DDQ
2
3
DDQ
DDQ
403
A
DDQ
3
3
DDQ
DDQ
404
A
DDQ
4
3
DDQ
DDQ
405
A
DDQ
5
3
DDQ
DDQ
406
A
DDQ
6
3
DDQ
DDQ
407
A
DRG
1
4
W7A
W7A
408
A
FMN
1
5
FMN
FMN
409
A
GOL
1
6
GOL
GOL
410
A
GOL
2
6
GOL
GOL
411
A
GOL
3
6
GOL
GOL
412
A
GOL
4
6
GOL
GOL
413
A
GOL
5
6
GOL
GOL
414
A
GOL
6
6
GOL
GOL
415
A
GOL
7
6
GOL
GOL
416
A
GOL
8
6
GOL
GOL
417
A
GOL
9
6
GOL
GOL
418
A
GOL
10
6
GOL
GOL
419
A
GOL
11
6
GOL
GOL
420
A
GOL
12
6
GOL
GOL
421
A
GOL
13
6
GOL
GOL
422
A
GOL
14
6
GOL
GOL
423
A
GOL
15
6
GOL
GOL
424
A
GOL
16
6
GOL
GOL
425
A
GOL
17
6
GOL
GOL
426
A
GOL
18
6
GOL
GOL
427
A
GOL
19
6
GOL
GOL
428
A
GOL
20
6
GOL
GOL
429
A
GOL
21
6
GOL
GOL
430
A
GOL
22
6
GOL
GOL
431
A
ORO
1
7
ORO
ORO
432
A
SO4
4
8
SO4
SO4
433
A
SO4
1
8
SO4
SO4
434
A
SO4
2
8
SO4
SO4
435
A
SO4
3
8
SO4
SO4
436
A
ACT
1
9
ACT
ACT
437
A
ACT
2
9
ACT
ACT
438
A
ACT
3
9
ACT
ACT
439
A
ACT
4
9
ACT
ACT
440
A
ACT
5
9
ACT
ACT
441
A
ACT
6
9
ACT
ACT
442
A
ACT
7
9
ACT
ACT
443
A
HOH
1
10
HOH
HOH
501
A
HOH
2
10
HOH
HOH
502
A
HOH
3
10
HOH
HOH
503
A
HOH
4
10
HOH
HOH
504
A
HOH
5
10
HOH
HOH
505
A
HOH
6
10
HOH
HOH
506
A
HOH
7
10
HOH
HOH
507
A
HOH
8
10
HOH
HOH
508
A
HOH
9
10
HOH
HOH
509
A
HOH
10
10
HOH
HOH
510
A
HOH
11
10
HOH
HOH
511
A
HOH
12
10
HOH
HOH
512
A
HOH
13
10
HOH
HOH
513
A
HOH
14
10
HOH
HOH
514
A
HOH
15
10
HOH
HOH
515
A
HOH
16
10
HOH
HOH
516
A
HOH
17
10
HOH
HOH
517
A
HOH
18
10
HOH
HOH
518
A
HOH
19
10
HOH
HOH
519
A
HOH
20
10
HOH
HOH
520
A
HOH
21
10
HOH
HOH
521
A
HOH
22
10
HOH
HOH
522
A
HOH
23
10
HOH
HOH
523
A
HOH
24
10
HOH
HOH
524
A
HOH
25
10
HOH
HOH
525
A
HOH
26
10
HOH
HOH
526
A
HOH
27
10
HOH
HOH
527
A
HOH
28
10
HOH
HOH
528
A
HOH
29
10
HOH
HOH
529
A
HOH
30
10
HOH
HOH
530
A
HOH
31
10
HOH
HOH
531
A
HOH
32
10
HOH
HOH
532
A
HOH
33
10
HOH
HOH
533
A
HOH
34
10
HOH
HOH
534
A
HOH
35
10
HOH
HOH
535
A
HOH
36
10
HOH
HOH
536
A
HOH
37
10
HOH
HOH
537
A
HOH
38
10
HOH
HOH
538
A
HOH
39
10
HOH
HOH
539
A
HOH
40
10
HOH
HOH
540
A
HOH
41
10
HOH
HOH
541
A
HOH
42
10
HOH
HOH
542
A
HOH
43
10
HOH
HOH
543
A
HOH
44
10
HOH
HOH
544
A
HOH
45
10
HOH
HOH
545
A
HOH
46
10
HOH
HOH
546
A
HOH
47
10
HOH
HOH
547
A
HOH
48
10
HOH
HOH
548
A
HOH
49
10
HOH
HOH
549
A
HOH
50
10
HOH
HOH
550
A
HOH
51
10
HOH
HOH
551
A
HOH
52
10
HOH
HOH
552
A
HOH
53
10
HOH
HOH
553
A
HOH
54
10
HOH
HOH
554
A
HOH
55
10
HOH
HOH
555
A
HOH
56
10
HOH
HOH
556
A
HOH
57
10
HOH
HOH
557
A
HOH
58
10
HOH
HOH
558
A
HOH
59
10
HOH
HOH
559
A
HOH
60
10
HOH
HOH
560
A
HOH
61
10
HOH
HOH
561
A
HOH
62
10
HOH
HOH
562
A
HOH
63
10
HOH
HOH
563
A
HOH
64
10
HOH
HOH
564
A
HOH
65
10
HOH
HOH
565
A
HOH
66
10
HOH
HOH
566
A
HOH
67
10
HOH
HOH
567
A
HOH
68
10
HOH
HOH
568
A
HOH
69
10
HOH
HOH
569
A
HOH
70
10
HOH
HOH
570
A
HOH
71
10
HOH
HOH
571
A
HOH
72
10
HOH
HOH
572
A
HOH
73
10
HOH
HOH
573
A
HOH
74
10
HOH
HOH
574
A
HOH
75
10
HOH
HOH
575
A
HOH
76
10
HOH
HOH
576
A
HOH
77
10
HOH
HOH
577
A
HOH
78
10
HOH
HOH
578
A
HOH
79
10
HOH
HOH
579
A
HOH
80
10
HOH
HOH
580
A
HOH
81
10
HOH
HOH
581
A
HOH
82
10
HOH
HOH
582
A
HOH
83
10
HOH
HOH
583
A
HOH
84
10
HOH
HOH
584
A
HOH
85
10
HOH
HOH
585
A
HOH
86
10
HOH
HOH
586
A
HOH
87
10
HOH
HOH
587
A
HOH
88
10
HOH
HOH
588
A
HOH
89
10
HOH
HOH
589
A
HOH
90
10
HOH
HOH
590
A
HOH
91
10
HOH
HOH
591
A
HOH
92
10
HOH
HOH
592
A
HOH
93
10
HOH
HOH
593
A
HOH
94
10
HOH
HOH
594
A
HOH
95
10
HOH
HOH
595
A
HOH
96
10
HOH
HOH
596
A
HOH
97
10
HOH
HOH
597
A
HOH
98
10
HOH
HOH
598
A
HOH
99
10
HOH
HOH
599
A
HOH
100
10
HOH
HOH
600
A
HOH
101
10
HOH
HOH
601
A
HOH
102
10
HOH
HOH
602
A
HOH
103
10
HOH
HOH
603
A
HOH
104
10
HOH
HOH
604
A
HOH
105
10
HOH
HOH
605
A
HOH
106
10
HOH
HOH
606
A
HOH
107
10
HOH
HOH
607
A
HOH
108
10
HOH
HOH
608
A
HOH
109
10
HOH
HOH
609
A
HOH
110
10
HOH
HOH
610
A
HOH
111
10
HOH
HOH
611
A
HOH
112
10
HOH
HOH
612
A
HOH
113
10
HOH
HOH
613
A
HOH
114
10
HOH
HOH
614
A
HOH
115
10
HOH
HOH
615
A
HOH
116
10
HOH
HOH
616
A
HOH
117
10
HOH
HOH
617
A
HOH
118
10
HOH
HOH
618
A
HOH
119
10
HOH
HOH
619
A
HOH
120
10
HOH
HOH
620
A
HOH
121
10
HOH
HOH
621
A
HOH
122
10
HOH
HOH
622
A
HOH
123
10
HOH
HOH
623
A
HOH
124
10
HOH
HOH
624
A
HOH
125
10
HOH
HOH
625
A
HOH
126
10
HOH
HOH
626
A
HOH
127
10
HOH
HOH
627
A
HOH
128
10
HOH
HOH
628
A
HOH
129
10
HOH
HOH
629
A
HOH
130
10
HOH
HOH
630
A
HOH
131
10
HOH
HOH
631
A
HOH
132
10
HOH
HOH
632
A
HOH
133
10
HOH
HOH
633
A
HOH
134
10
HOH
HOH
634
A
HOH
135
10
HOH
HOH
635
A
HOH
136
10
HOH
HOH
636
A
HOH
137
10
HOH
HOH
637
A
HOH
138
10
HOH
HOH
638
A
HOH
139
10
HOH
HOH
639
A
HOH
140
10
HOH
HOH
640
A
HOH
141
10
HOH
HOH
641
A
HOH
142
10
HOH
HOH
642
A
HOH
143
10
HOH
HOH
643
A
HOH
144
10
HOH
HOH
644
A
HOH
145
10
HOH
HOH
645
A
HOH
146
10
HOH
HOH
646
A
HOH
147
10
HOH
HOH
647
A
HOH
148
10
HOH
HOH
648
A
HOH
149
10
HOH
HOH
649
A
HOH
150
10
HOH
HOH
650
A
HOH
151
10
HOH
HOH
651
A
HOH
152
10
HOH
HOH
652
A
HOH
153
10
HOH
HOH
653
A
HOH
154
10
HOH
HOH
654
A
HOH
155
10
HOH
HOH
655
A
HOH
156
10
HOH
HOH
656
A
HOH
157
10
HOH
HOH
657
A
HOH
158
10
HOH
HOH
658
A
HOH
159
10
HOH
HOH
659
A
HOH
160
10
HOH
HOH
660
A
HOH
161
10
HOH
HOH
661
A
HOH
162
10
HOH
HOH
662
A
HOH
163
10
HOH
HOH
663
A
HOH
164
10
HOH
HOH
664
A
HOH
165
10
HOH
HOH
665
A
HOH
166
10
HOH
HOH
666
A
HOH
167
10
HOH
HOH
667
A
HOH
168
10
HOH
HOH
668
A
HOH
169
10
HOH
HOH
669
A
HOH
170
10
HOH
HOH
670
A
HOH
171
10
HOH
HOH
671
A
HOH
172
10
HOH
HOH
672
A
HOH
173
10
HOH
HOH
673
A
HOH
174
10
HOH
HOH
674
A
HOH
175
10
HOH
HOH
675
A
HOH
176
10
HOH
HOH
676
A
HOH
177
10
HOH
HOH
677
A
HOH
178
10
HOH
HOH
678
A
HOH
179
10
HOH
HOH
679
A
HOH
180
10
HOH
HOH
680
A
HOH
181
10
HOH
HOH
681
A
HOH
182
10
HOH
HOH
682
A
HOH
183
10
HOH
HOH
683
A
HOH
184
10
HOH
HOH
684
A
HOH
185
10
HOH
HOH
685
A
HOH
186
10
HOH
HOH
686
A
HOH
187
10
HOH
HOH
687
A
HOH
188
10
HOH
HOH
688
A
HOH
189
10
HOH
HOH
689
A
HOH
190
10
HOH
HOH
690
A
HOH
191
10
HOH
HOH
691
A
HOH
192
10
HOH
HOH
692
A
HOH
193
10
HOH
HOH
693
A
HOH
194
10
HOH
HOH
694
A
HOH
195
10
HOH
HOH
695
A
HOH
196
10
HOH
HOH
696
A
HOH
197
10
HOH
HOH
697
A
HOH
198
10
HOH
HOH
698
A
HOH
199
10
HOH
HOH
699
A
HOH
200
10
HOH
HOH
700
A
HOH
201
10
HOH
HOH
701
A
HOH
202
10
HOH
HOH
702
A
HOH
203
10
HOH
HOH
703
A
HOH
204
10
HOH
HOH
704
A
HOH
205
10
HOH
HOH
705
A
HOH
206
10
HOH
HOH
706
A
HOH
207
10
HOH
HOH
707
A
HOH
208
10
HOH
HOH
708
A
HOH
209
10
HOH
HOH
709
A
HOH
210
10
HOH
HOH
710
A
HOH
211
10
HOH
HOH
711
A
HOH
212
10
HOH
HOH
712
A
HOH
213
10
HOH
HOH
713
A
HOH
214
10
HOH
HOH
714
A
HOH
215
10
HOH
HOH
715
A
HOH
216
10
HOH
HOH
716
A
HOH
217
10
HOH
HOH
717
A
HOH
218
10
HOH
HOH
718
A
HOH
219
10
HOH
HOH
719
A
HOH
220
10
HOH
HOH
720
A
HOH
221
10
HOH
HOH
721
A
HOH
222
10
HOH
HOH
722
A
HOH
223
10
HOH
HOH
723
A
HOH
224
10
HOH
HOH
724
A
HOH
225
10
HOH
HOH
725
A
HOH
226
10
HOH
HOH
726
A
HOH
227
10
HOH
HOH
727
A
HOH
228
10
HOH
HOH
728
A
HOH
229
10
HOH
HOH
729
A
HOH
230
10
HOH
HOH
730
A
HOH
231
10
HOH
HOH
731
A
HOH
232
10
HOH
HOH
732
A
HOH
233
10
HOH
HOH
733
A
HOH
234
10
HOH
HOH
734
A
HOH
235
10
HOH
HOH
735
A
HOH
236
10
HOH
HOH
736
A
HOH
237
10
HOH
HOH
737
A
HOH
238
10
HOH
HOH
738
A
HOH
239
10
HOH
HOH
739
A
HOH
240
10
HOH
HOH
740
A
HOH
241
10
HOH
HOH
741
A
HOH
242
10
HOH
HOH
742
A
HOH
243
10
HOH
HOH
743
A
HOH
244
10
HOH
HOH
744
A
HOH
245
10
HOH
HOH
745
A
HOH
246
10
HOH
HOH
746
A
HOH
247
10
HOH
HOH
747
A
HOH
248
10
HOH
HOH
748
A
HOH
249
10
HOH
HOH
749
A
HOH
250
10
HOH
HOH
750
A
HOH
251
10
HOH
HOH
751
A
HOH
252
10
HOH
HOH
752
A
HOH
253
10
HOH
HOH
753
A
HOH
254
10
HOH
HOH
754
A
HOH
255
10
HOH
HOH
755
A
HOH
256
10
HOH
HOH
756
A
HOH
257
10
HOH
HOH
757
A
HOH
258
10
HOH
HOH
758
A
HOH
259
10
HOH
HOH
759
A
HOH
260
10
HOH
HOH
760
A
HOH
261
10
HOH
HOH
761
A
HOH
262
10
HOH
HOH
762
A
HOH
263
10
HOH
HOH
763
A
HOH
264
10
HOH
HOH
764
A
HOH
265
10
HOH
HOH
765
A
HOH
266
10
HOH
HOH
766
A
HOH
267
10
HOH
HOH
767
A
HOH
268
10
HOH
HOH
768
A
HOH
269
10
HOH
HOH
769
A
HOH
270
10
HOH
HOH
770
A
HOH
271
10
HOH
HOH
771
A
HOH
272
10
HOH
HOH
772
A
HOH
273
10
HOH
HOH
773
A
HOH
274
10
HOH
HOH
774
A
HOH
275
10
HOH
HOH
775
A
HOH
276
10
HOH
HOH
776
A
HOH
277
10
HOH
HOH
777
A
HOH
278
10
HOH
HOH
778
A
HOH
279
10
HOH
HOH
779
A
HOH
280
10
HOH
HOH
780
A
HOH
281
10
HOH
HOH
781
A
HOH
282
10
HOH
HOH
782
A
HOH
283
10
HOH
HOH
783
A
HOH
284
10
HOH
HOH
784
A
HOH
285
10
HOH
HOH
785
A
HOH
286
10
HOH
HOH
786
A
HOH
287
10
HOH
HOH
787
A
HOH
288
10
HOH
HOH
788
A
HOH
289
10
HOH
HOH
789
A
HOH
290
10
HOH
HOH
790
A
HOH
291
10
HOH
HOH
791
A
HOH
292
10
HOH
HOH
792
A
HOH
293
10
HOH
HOH
793
A
HOH
294
10
HOH
HOH
794
A
HOH
295
10
HOH
HOH
795
A
HOH
296
10
HOH
HOH
796
A
HOH
297
10
HOH
HOH
797
A
HOH
298
10
HOH
HOH
798
A
HOH
299
10
HOH
HOH
799
A
HOH
300
10
HOH
HOH
800
A
HOH
301
10
HOH
HOH
801
A
HOH
302
10
HOH
HOH
802
A
HOH
303
10
HOH
HOH
803
A
HOH
304
10
HOH
HOH
804
A
HOH
305
10
HOH
HOH
805
A
HOH
306
10
HOH
HOH
806
A
HOH
307
10
HOH
HOH
807
A
HOH
308
10
HOH
HOH
808
A
HOH
309
10
HOH
HOH
809
A
HOH
310
10
HOH
HOH
810
A
HOH
311
10
HOH
HOH
811
A
HOH
312
10
HOH
HOH
812
A
HOH
313
10
HOH
HOH
813
A
HOH
314
10
HOH
HOH
814
A
HOH
315
10
HOH
HOH
815
A
HOH
316
10
HOH
HOH
816
A
HOH
317
10
HOH
HOH
817
A
n
1
7
A
n
2
8
A
n
3
9
A
n
4
10
A
n
5
11
A
n
6
12
A
n
7
13
A
n
8
14
A
n
9
15
A
n
10
16
A
n
11
17
A
n
12
18
A
n
13
19
A
n
14
20
A
n
15
21
A
n
16
22
A
n
17
23
A
n
18
24
A
n
19
25
A
n
20
26
A
n
21
27
A
n
22
28
A
n
23
29
A
MET
30
n
24
MET
30
A
ALA
31
n
25
ALA
31
A
THR
32
n
26
THR
32
A
GLY
33
n
27
GLY
33
A
ASP
34
n
28
ASP
34
A
GLU
35
n
29
GLU
35
A
ARG
36
n
30
ARG
36
A
PHE
37
n
31
PHE
37
A
TYR
38
n
32
TYR
38
A
ALA
39
n
33
ALA
39
A
GLU
40
n
34
GLU
40
A
HIS
41
n
35
HIS
41
A
LEU
42
n
36
LEU
42
A
MET
43
n
37
MET
43
A
PRO
44
n
38
PRO
44
A
THR
45
n
39
THR
45
A
LEU
46
n
40
LEU
46
A
GLN
47
n
41
GLN
47
A
GLY
48
n
42
GLY
48
A
LEU
49
n
43
LEU
49
A
LEU
50
n
44
LEU
50
A
ASP
51
n
45
ASP
51
A
PRO
52
n
46
PRO
52
A
GLU
53
n
47
GLU
53
A
SER
54
n
48
SER
54
A
ALA
55
n
49
ALA
55
A
HIS
56
n
50
HIS
56
A
ARG
57
n
51
ARG
57
A
LEU
58
n
52
LEU
58
A
ALA
59
n
53
ALA
59
A
VAL
60
n
54
VAL
60
A
ARG
61
n
55
ARG
61
A
PHE
62
n
56
PHE
62
A
THR
63
n
57
THR
63
A
SER
64
n
58
SER
64
A
LEU
65
n
59
LEU
65
A
GLY
66
n
60
GLY
66
A
LEU
67
n
61
LEU
67
A
LEU
68
n
62
LEU
68
A
PRO
69
n
63
PRO
69
A
ARG
70
n
64
ARG
70
A
ALA
71
n
65
ALA
71
A
ARG
72
n
66
ARG
72
A
PHE
73
n
67
PHE
73
A
GLN
74
n
68
GLN
74
A
ASP
75
n
69
ASP
75
A
SER
76
n
70
SER
76
A
ASP
77
n
71
ASP
77
A
MET
78
n
72
MET
78
A
LEU
79
n
73
LEU
79
A
GLU
80
n
74
GLU
80
A
VAL
81
n
75
VAL
81
A
ARG
82
n
76
ARG
82
A
VAL
83
n
77
VAL
83
A
LEU
84
n
78
LEU
84
A
GLY
85
n
79
GLY
85
A
HIS
86
n
80
HIS
86
A
LYS
87
n
81
LYS
87
A
PHE
88
n
82
PHE
88
A
ARG
89
n
83
ARG
89
A
ASN
90
n
84
ASN
90
A
PRO
91
n
85
PRO
91
A
VAL
92
n
86
VAL
92
A
GLY
93
n
87
GLY
93
A
ILE
94
n
88
ILE
94
A
ALA
95
n
89
ALA
95
A
ALA
96
n
90
ALA
96
A
GLY
97
n
91
GLY
97
A
PHE
98
n
92
PHE
98
A
ASP
99
n
93
ASP
99
A
LYS
100
n
94
LYS
100
A
HIS
101
n
95
HIS
101
A
GLY
102
n
96
GLY
102
A
GLU
103
n
97
GLU
103
A
ALA
104
n
98
ALA
104
A
VAL
105
n
99
VAL
105
A
ASP
106
n
100
ASP
106
A
GLY
107
n
101
GLY
107
A
LEU
108
n
102
LEU
108
A
TYR
109
n
103
TYR
109
A
LYS
110
n
104
LYS
110
A
MET
111
n
105
MET
111
A
GLY
112
n
106
GLY
112
A
PHE
113
n
107
PHE
113
A
GLY
114
n
108
GLY
114
A
PHE
115
n
109
PHE
115
A
VAL
116
n
110
VAL
116
A
GLU
117
n
111
GLU
117
A
ILE
118
n
112
ILE
118
A
GLY
119
n
113
GLY
119
A
SER
120
n
114
SER
120
A
VAL
121
n
115
VAL
121
A
THR
122
n
116
THR
122
A
PRO
123
n
117
PRO
123
A
LYS
124
n
118
LYS
124
A
PRO
125
n
119
PRO
125
A
GLN
126
n
120
GLN
126
A
GLU
127
n
121
GLU
127
A
GLY
128
n
122
GLY
128
A
ASN
129
n
123
ASN
129
A
PRO
130
n
124
PRO
130
A
ARG
131
n
125
ARG
131
A
PRO
132
n
126
PRO
132
A
ARG
133
n
127
ARG
133
A
VAL
134
n
128
VAL
134
A
PHE
135
n
129
PHE
135
A
ARG
136
n
130
ARG
136
A
LEU
137
n
131
LEU
137
A
PRO
138
n
132
PRO
138
A
GLU
139
n
133
GLU
139
A
ASP
140
n
134
ASP
140
A
GLN
141
n
135
GLN
141
A
ALA
142
n
136
ALA
142
A
VAL
143
n
137
VAL
143
A
ILE
144
n
138
ILE
144
A
ASN
145
n
139
ASN
145
A
ARG
146
n
140
ARG
146
A
TYR
147
n
141
TYR
147
A
GLY
148
n
142
GLY
148
A
PHE
149
n
143
PHE
149
A
ASN
150
n
144
ASN
150
A
SER
151
n
145
SER
151
A
HIS
152
n
146
HIS
152
A
GLY
153
n
147
GLY
153
A
LEU
154
n
148
LEU
154
A
SER
155
n
149
SER
155
A
VAL
156
n
150
VAL
156
A
VAL
157
n
151
VAL
157
A
GLU
158
n
152
GLU
158
A
HIS
159
n
153
HIS
159
A
ARG
160
n
154
ARG
160
A
LEU
161
n
155
LEU
161
A
ARG
162
n
156
ARG
162
A
ALA
163
n
157
ALA
163
A
ARG
164
n
158
ARG
164
A
GLN
165
n
159
GLN
165
A
GLN
166
n
160
GLN
166
A
LYS
167
n
161
LYS
167
A
GLN
168
n
162
GLN
168
A
ALA
169
n
163
ALA
169
A
LYS
170
n
164
LYS
170
A
LEU
171
n
165
LEU
171
A
THR
172
n
166
THR
172
A
GLU
173
n
167
GLU
173
A
ASP
174
n
168
ASP
174
A
GLY
175
n
169
GLY
175
A
LEU
176
n
170
LEU
176
A
PRO
177
n
171
PRO
177
A
LEU
178
n
172
LEU
178
A
GLY
179
n
173
GLY
179
A
VAL
180
n
174
VAL
180
A
ASN
181
n
175
ASN
181
A
LEU
182
n
176
LEU
182
A
GLY
183
n
177
GLY
183
A
LYS
184
n
178
LYS
184
A
ASN
185
n
179
ASN
185
A
LYS
186
n
180
LYS
186
A
THR
187
n
181
THR
187
A
SER
188
n
182
SER
188
A
VAL
189
n
183
VAL
189
A
ASP
190
n
184
ASP
190
A
ALA
191
n
185
ALA
191
A
ALA
192
n
186
ALA
192
A
GLU
193
n
187
GLU
193
A
ASP
194
n
188
ASP
194
A
TYR
195
n
189
TYR
195
A
ALA
196
n
190
ALA
196
A
GLU
197
n
191
GLU
197
A
GLY
198
n
192
GLY
198
A
VAL
199
n
193
VAL
199
A
ARG
200
n
194
ARG
200
A
VAL
201
n
195
VAL
201
A
LEU
202
n
196
LEU
202
A
GLY
203
n
197
GLY
203
A
PRO
204
n
198
PRO
204
A
LEU
205
n
199
LEU
205
A
ALA
206
n
200
ALA
206
A
ASP
207
n
201
ASP
207
A
TYR
208
n
202
TYR
208
A
LEU
209
n
203
LEU
209
A
VAL
210
n
204
VAL
210
A
VAL
211
n
205
VAL
211
A
ASN
212
n
206
ASN
212
A
VAL
213
n
207
VAL
213
A
SER
214
n
208
SER
214
A
SER
215
n
209
SER
215
A
PRO
216
n
210
PRO
216
A
ASN
217
n
211
ASN
217
A
THR
218
n
212
THR
218
A
ALA
219
n
213
ALA
219
A
GLY
220
n
214
GLY
220
A
LEU
221
n
215
LEU
221
A
ARG
222
n
216
ARG
222
A
SER
223
n
217
SER
223
A
LEU
224
n
218
LEU
224
A
GLN
225
n
219
GLN
225
A
GLY
226
n
220
GLY
226
A
LYS
227
n
221
LYS
227
A
ALA
228
n
222
ALA
228
A
GLU
229
n
223
GLU
229
A
LEU
230
n
224
LEU
230
A
ARG
231
n
225
ARG
231
A
ARG
232
n
226
ARG
232
A
LEU
233
n
227
LEU
233
A
LEU
234
n
228
LEU
234
A
THR
235
n
229
THR
235
A
LYS
236
n
230
LYS
236
A
VAL
237
n
231
VAL
237
A
LEU
238
n
232
LEU
238
A
GLN
239
n
233
GLN
239
A
GLU
240
n
234
GLU
240
A
ARG
241
n
235
ARG
241
A
ASP
242
n
236
ASP
242
A
GLY
243
n
237
GLY
243
A
LEU
244
n
238
LEU
244
A
ARG
245
n
239
ARG
245
A
ARG
246
n
240
ARG
246
A
VAL
247
n
241
VAL
247
A
HIS
248
n
242
HIS
248
A
ARG
249
n
243
ARG
249
A
PRO
250
n
244
PRO
250
A
ALA
251
n
245
ALA
251
A
VAL
252
n
246
VAL
252
A
LEU
253
n
247
LEU
253
A
VAL
254
n
248
VAL
254
A
LYS
255
n
249
LYS
255
A
ILE
256
n
250
ILE
256
A
ALA
257
n
251
ALA
257
A
PRO
258
n
252
PRO
258
A
ASP
259
n
253
ASP
259
A
LEU
260
n
254
LEU
260
A
THR
261
n
255
THR
261
A
SER
262
n
256
SER
262
A
GLN
263
n
257
GLN
263
A
ASP
264
n
258
ASP
264
A
LYS
265
n
259
LYS
265
A
GLU
266
n
260
GLU
266
A
ASP
267
n
261
ASP
267
A
ILE
268
n
262
ILE
268
A
ALA
269
n
263
ALA
269
A
SER
270
n
264
SER
270
A
VAL
271
n
265
VAL
271
A
VAL
272
n
266
VAL
272
A
LYS
273
n
267
LYS
273
A
GLU
274
n
268
GLU
274
A
LEU
275
n
269
LEU
275
A
GLY
276
n
270
GLY
276
A
ILE
277
n
271
ILE
277
A
ASP
278
n
272
ASP
278
A
GLY
279
n
273
GLY
279
A
LEU
280
n
274
LEU
280
A
ILE
281
n
275
ILE
281
A
VAL
282
n
276
VAL
282
A
THR
283
n
277
THR
283
A
ASN
284
n
278
ASN
284
A
THR
285
n
279
THR
285
A
THR
286
n
280
THR
286
A
VAL
287
n
281
VAL
287
A
SER
288
n
282
SER
288
A
ARG
289
n
283
ARG
289
A
PRO
290
n
284
PRO
290
A
ALA
291
n
285
ALA
291
A
GLY
292
n
286
GLY
292
A
LEU
293
n
287
LEU
293
A
GLN
294
n
288
GLN
294
A
GLY
295
n
289
GLY
295
A
ALA
296
n
290
ALA
296
A
LEU
297
n
291
LEU
297
A
ARG
298
n
292
ARG
298
A
SER
299
n
293
SER
299
A
GLU
300
n
294
GLU
300
A
THR
301
n
295
THR
301
A
GLY
302
n
296
GLY
302
A
GLY
303
n
297
GLY
303
A
LEU
304
n
298
LEU
304
A
SER
305
n
299
SER
305
A
GLY
306
n
300
GLY
306
A
LYS
307
n
301
LYS
307
A
PRO
308
n
302
PRO
308
A
LEU
309
n
303
LEU
309
A
ARG
310
n
304
ARG
310
A
ASP
311
n
305
ASP
311
A
LEU
312
n
306
LEU
312
A
SER
313
n
307
SER
313
A
THR
314
n
308
THR
314
A
GLN
315
n
309
GLN
315
A
THR
316
n
310
THR
316
A
ILE
317
n
311
ILE
317
A
ARG
318
n
312
ARG
318
A
GLU
319
n
313
GLU
319
A
MET
320
n
314
MET
320
A
TYR
321
n
315
TYR
321
A
ALA
322
n
316
ALA
322
A
LEU
323
n
317
LEU
323
A
THR
324
n
318
THR
324
A
GLN
325
n
319
GLN
325
A
GLY
326
n
320
GLY
326
A
ARG
327
n
321
ARG
327
A
VAL
328
n
322
VAL
328
A
PRO
329
n
323
PRO
329
A
ILE
330
n
324
ILE
330
A
ILE
331
n
325
ILE
331
A
GLY
332
n
326
GLY
332
A
VAL
333
n
327
VAL
333
A
GLY
334
n
328
GLY
334
A
GLY
335
n
329
GLY
335
A
VAL
336
n
330
VAL
336
A
SER
337
n
331
SER
337
A
SER
338
n
332
SER
338
A
GLY
339
n
333
GLY
339
A
GLN
340
n
334
GLN
340
A
ASP
341
n
335
ASP
341
A
ALA
342
n
336
ALA
342
A
LEU
343
n
337
LEU
343
A
GLU
344
n
338
GLU
344
A
LYS
345
n
339
LYS
345
A
ILE
346
n
340
ILE
346
A
ARG
347
n
341
ARG
347
A
ALA
348
n
342
ALA
348
A
GLY
349
n
343
GLY
349
A
ALA
350
n
344
ALA
350
A
SER
351
n
345
SER
351
A
LEU
352
n
346
LEU
352
A
VAL
353
n
347
VAL
353
A
GLN
354
n
348
GLN
354
A
LEU
355
n
349
LEU
355
A
TYR
356
n
350
TYR
356
A
THR
357
n
351
THR
357
A
ALA
358
n
352
ALA
358
A
LEU
359
n
353
LEU
359
A
THR
360
n
354
THR
360
A
PHE
361
n
355
PHE
361
A
TRP
362
n
356
TRP
362
A
GLY
363
n
357
GLY
363
A
PRO
364
n
358
PRO
364
A
PRO
365
n
359
PRO
365
A
VAL
366
n
360
VAL
366
A
VAL
367
n
361
VAL
367
A
GLY
368
n
362
GLY
368
A
LYS
369
n
363
LYS
369
A
VAL
370
n
364
VAL
370
A
LYS
371
n
365
LYS
371
A
ARG
372
n
366
ARG
372
A
GLU
373
n
367
GLU
373
A
LEU
374
n
368
LEU
374
A
GLU
375
n
369
GLU
375
A
ALA
376
n
370
ALA
376
A
LEU
377
n
371
LEU
377
A
LEU
378
n
372
LEU
378
A
LYS
379
n
373
LYS
379
A
GLU
380
n
374
GLU
380
A
GLN
381
n
375
GLN
381
A
GLY
382
n
376
GLY
382
A
PHE
383
n
377
PHE
383
A
GLY
384
n
378
GLY
384
A
GLY
385
n
379
GLY
385
A
VAL
386
n
380
VAL
386
A
THR
387
n
381
THR
387
A
ASP
388
n
382
ASP
388
A
ALA
389
n
383
ALA
389
A
ILE
390
n
384
ILE
390
A
GLY
391
n
385
GLY
391
A
ALA
392
n
386
ALA
392
A
ASP
393
n
387
ASP
393
A
HIS
394
n
388
HIS
394
A
ARG
395
n
389
ARG
395
A
ARG
396
n
390
ARG
396
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
81
A
N
VAL
75
A
O
PHE
88
A
O
PHE
82
A
N
ILE
94
A
N
ILE
88
A
O
PHE
115
A
O
PHE
109
A
N
VAL
116
A
N
VAL
110
A
O
GLY
179
A
O
GLY
173
A
N
LEU
182
A
N
LEU
176
A
O
VAL
210
A
O
VAL
204
A
N
LEU
209
A
N
LEU
203
A
O
ALA
251
A
O
ALA
245
A
N
ILE
256
A
N
ILE
250
A
O
ILE
281
A
O
ILE
275
A
N
LEU
280
A
N
LEU
274
A
O
ILE
331
A
O
ILE
325
A
N
GLY
332
A
N
GLY
326
A
O
LEU
352
A
O
LEU
346
A
O
VAL
353
A
O
VAL
347
A
N
GLY
93
A
N
GLY
87
A
N
PHE
135
A
N
PHE
129
A
O
ILE
144
A
O
ILE
138
A
N
ASN
145
A
N
ASN
139
A
O
GLY
303
A
O
GLY
297
1
A
HOH
800
SA
HOH
1
A
CA
ASP
174
A
A
CA
ASP
168
0
Y
1
A
CB
ASP
174
A
A
CB
ASP
168
0
Y
1
A
CG
ASP
174
A
A
CG
ASP
168
0
Y
1
A
OD1
ASP
174
A
A
OD1
ASP
168
0
Y
1
A
OD2
ASP
174
A
A
OD2
ASP
168
0
Y
1
A
MET
7
A
MET
1
1
Y
1
A
GLY
8
A
GLY
2
1
Y
1
A
HIS
9
A
HIS
3
1
Y
1
A
HIS
10
A
HIS
4
1
Y
1
A
HIS
11
A
HIS
5
1
Y
1
A
HIS
12
A
HIS
6
1
Y
1
A
HIS
13
A
HIS
7
1
Y
1
A
HIS
14
A
HIS
8
1
Y
1
A
HIS
15
A
HIS
9
1
Y
1
A
HIS
16
A
HIS
10
1
Y
1
A
HIS
17
A
HIS
11
1
Y
1
A
HIS
18
A
HIS
12
1
Y
1
A
SER
19
A
SER
13
1
Y
1
A
SER
20
A
SER
14
1
Y
1
A
GLY
21
A
GLY
15
1
Y
1
A
HIS
22
A
HIS
16
1
Y
1
A
ILE
23
A
ILE
17
1
Y
1
A
ASP
24
A
ASP
18
1
Y
1
A
ASP
25
A
ASP
19
1
Y
1
A
ASP
26
A
ASP
20
1
Y
1
A
ASP
27
A
ASP
21
1
Y
1
A
LYS
28
A
LYS
22
1
Y
1
A
HIS
29
A
HIS
23
1
Y
1
A
ALA
31
-27.55
1
A
ALA
31
-20.78
1
A
THR
32
11.36
B
1
A
GLY
226
27.40
1
A
GLY
226
26.52
1
A
ARG
395
-12.16
1
A
ARG
395
-15.44
1
A
A
ALA
THR
31
32
A
-139.27
1
A
A
ALA
THR
31
32
B
-140.03
1
A
A
GLY
LYS
226
227
A
-143.13
1
A
A
GLY
LYS
226
227
B
-147.29
1
A
A
C
N
ALA
GLU
196
197
1.17
A
1
21.00
2.20
117.20
138.20
A
A
A
CA
C
N
ALA
ALA
THR
31
31
32
A
Y
1
18.90
2.20
117.20
136.10
A
A
A
CA
C
N
ALA
ALA
THR
31
31
32
B
Y
1
-29.21
1.60
122.70
93.49
A
A
A
O
C
N
ALA
ALA
THR
31
31
32
A
Y
1
-23.68
1.60
122.70
99.02
A
A
A
O
C
N
ALA
ALA
THR
31
31
32
B
Y
1
-3.63
0.50
120.30
116.67
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
136
136
136
B
B
B
N
1
4.78
0.50
120.30
125.08
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
136
136
136
B
B
B
N
1
-13.76
2.20
117.20
103.44
A
A
A
CA
C
N
GLY
GLY
LYS
226
226
227
B
Y
1
-17.22
1.60
122.70
105.48
A
A
A
O
C
N
GLY
GLY
LYS
226
226
227
A
Y
1
-14.65
1.60
122.70
108.05
A
A
A
O
C
N
GLY
GLY
LYS
226
226
227
B
Y
1
-14.50
2.00
110.40
95.90
A
A
A
CB
CA
C
LYS
LYS
LYS
227
227
227
B
B
B
N
1
-11.83
1.80
110.60
98.77
A
A
A
N
CA
CB
LYS
LYS
LYS
227
227
227
B
B
B
N
1
-3.32
0.50
120.30
116.98
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
347
347
347
N
1
-15.84
1.60
122.70
106.86
A
A
A
O
C
N
ARG
ARG
ARG
395
395
396
B
Y
1
-12.64
2.10
111.80
99.16
A
A
A
CG
CD
NE
ARG
ARG
ARG
396
396
396
B
B
B
N
1
A
A
C
N
ALA
GLU
196
197
-0.162
0.023
1.336
1.174
A
Y
1
A
A
CD
N
PRO
PRO
258
258
0.084
0.014
1.474
1.558
N
1
A
A
CD
OE1
GLU
GLU
266
266
-0.070
0.011
1.252
1.182
N
1
A
A
CB
OG
SER
SER
337
337
-0.078
0.013
1.418
1.340
A
A
N
1
A
ALA
31
156.56
110.27
1
A
ALA
31
156.56
100.26
1
A
HIS
41
-121.09
-53.64
1
A
TYR
356
-138.52
-61.81
20.782
0.00
0.00
0.00
0.00
0.00
-0.00
0.969
0.954
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.17186
0.14019
0.14181
0.14181
1.68
36.34
3387
66931
63486
5.1
99.90
1.101
0.038
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.065
0.070
0.80
0.80
1.20
3ZWS
MAXIMUM LIKELIHOOD
MASK
1.68
36.34
317
3454
332
0
2805
0.028
0.019
3328
0.003
0.020
3318
2.888
2.070
4463
1.208
3.003
7625
6.413
5.000
394
36.276
22.985
134
14.479
15.000
526
21.328
15.000
33
0.238
0.200
488
0.016
0.021
3622
0.002
0.020
717
0.190
0.159
1.723
248
4585
20
99.28
1.68
50
3W7R
66931
66902
0
-3
0.058
1
11.5
11.0
100
0.410
1.68
1.71
6.31
3300
1
11.0
100
data collection
HKL-2000
phasing
MOLREP
refinement
REFMAC
5.7.0029
data reduction
HKL-2000
data scaling
HKL-2000
Structure of Human dihydroorotate dehydrogenase in complex with mii-4-097
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
7
N
N
8
N
N
8
N
N
8
N
N
8
N
N
9
N
N
9
N
N
9
N
N
9
N
N
9
N
N
9
N
N
9
N
N
10
N
N
A
THR
32
A
THR
26
HELX_P
A
HIS
41
A
HIS
35
1
1
10
A
HIS
41
A
HIS
35
HELX_P
A
LEU
50
A
LEU
44
1
2
10
A
ASP
51
A
ASP
45
HELX_P
A
LEU
65
A
LEU
59
1
3
15
A
SER
76
A
SER
70
HELX_P
A
GLU
80
A
GLU
74
5
4
5
A
ALA
104
A
ALA
98
HELX_P
A
MET
111
A
MET
105
1
5
8
A
PRO
138
A
PRO
132
HELX_P
A
ASP
140
A
ASP
134
5
6
3
A
HIS
152
A
HIS
146
HELX_P
A
ALA
163
A
ALA
157
1
7
12
A
ARG
164
A
ARG
158
HELX_P
A
ASP
174
A
ASP
168
1
8
11
A
ASP
190
A
ASP
184
HELX_P
A
GLY
203
A
GLY
197
1
9
14
A
PRO
204
A
PRO
198
HELX_P
A
ALA
206
A
ALA
200
5
10
3
A
GLY
220
A
GLY
214
HELX_P
A
GLN
225
A
GLN
219
5
11
6
A
GLY
226
A
GLY
220
HELX_P
A
GLY
243
A
GLY
237
1
12
18
A
ARG
245
A
ARG
239
HELX_P
A
ARG
249
A
ARG
243
5
13
5
A
THR
261
A
THR
255
HELX_P
A
GLY
276
A
GLY
270
1
14
16
A
LEU
309
A
LEU
303
HELX_P
A
THR
324
A
THR
318
1
15
16
A
SER
338
A
SER
332
HELX_P
A
GLY
349
A
GLY
343
1
16
12
A
TYR
356
A
TYR
350
HELX_P
A
GLY
363
A
GLY
357
1
17
8
A
PRO
365
A
PRO
359
HELX_P
A
GLN
381
A
GLN
375
1
18
17
A
GLY
385
A
GLY
379
HELX_P
A
ILE
390
A
ILE
384
1
19
6
A
GLY
391
A
GLY
385
HELX_P
A
ARG
396
A
ARG
390
5
20
6
OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Rossmann Fold, Oxidoreductase, Dihydroorotate/orotate and ubiquinone/ubiquinol, Mitochondrial inner membrane, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex
A
GLY
119
A
GLY
113
1
A
SER
120
A
SER
114
7.64
A
ARG
131
A
ARG
125
1
A
PRO
132
A
PRO
126
7.15
A
VAL
282
A
VAL
276
1
A
THR
283
A
THR
277
15.68
PYRD_HUMAN
UNP
1
29
Q02127
MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY
KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV
DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA
SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG
ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR
29
395
3W7R
30
396
Q02127
A
1
24
390
1
expression tag
MET
7
3W7R
A
Q02127
UNP
1
1
expression tag
GLY
8
3W7R
A
Q02127
UNP
2
1
expression tag
HIS
9
3W7R
A
Q02127
UNP
3
1
expression tag
HIS
10
3W7R
A
Q02127
UNP
4
1
expression tag
HIS
11
3W7R
A
Q02127
UNP
5
1
expression tag
HIS
12
3W7R
A
Q02127
UNP
6
1
expression tag
HIS
13
3W7R
A
Q02127
UNP
7
1
expression tag
HIS
14
3W7R
A
Q02127
UNP
8
1
expression tag
HIS
15
3W7R
A
Q02127
UNP
9
1
expression tag
HIS
16
3W7R
A
Q02127
UNP
10
1
expression tag
HIS
17
3W7R
A
Q02127
UNP
11
1
expression tag
HIS
18
3W7R
A
Q02127
UNP
12
1
expression tag
SER
19
3W7R
A
Q02127
UNP
13
1
expression tag
SER
20
3W7R
A
Q02127
UNP
14
1
expression tag
GLY
21
3W7R
A
Q02127
UNP
15
1
expression tag
HIS
22
3W7R
A
Q02127
UNP
16
1
expression tag
ILE
23
3W7R
A
Q02127
UNP
17
1
expression tag
ASP
24
3W7R
A
Q02127
UNP
18
1
expression tag
ASP
25
3W7R
A
Q02127
UNP
19
1
expression tag
ASP
26
3W7R
A
Q02127
UNP
20
1
expression tag
ASP
27
3W7R
A
Q02127
UNP
21
1
expression tag
LYS
28
3W7R
A
Q02127
UNP
22
1
expression tag
HIS
29
3W7R
A
Q02127
UNP
23
2
9
3
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
VAL
81
A
VAL
75
A
VAL
83
A
VAL
77
A
HIS
86
A
HIS
80
A
PHE
88
A
PHE
82
A
VAL
92
A
VAL
86
A
ILE
94
A
ILE
88
A
PHE
115
A
PHE
109
A
VAL
121
A
VAL
115
A
LEU
178
A
LEU
172
A
LEU
182
A
LEU
176
A
TYR
208
A
TYR
202
A
ASN
212
A
ASN
206
A
ALA
251
A
ALA
245
A
ILE
256
A
ILE
250
A
GLY
279
A
GLY
273
A
VAL
282
A
VAL
276
A
ILE
330
A
ILE
324
A
VAL
333
A
VAL
327
A
LEU
352
A
LEU
346
A
LEU
355
A
LEU
349
A
VAL
92
A
VAL
86
A
ILE
94
A
ILE
88
A
VAL
134
A
VAL
128
A
LEU
137
A
LEU
131
A
ALA
142
A
ALA
136
A
ASN
145
A
ASN
139
A
GLY
303
A
GLY
297
A
GLY
306
A
GLY
300
BINDING SITE FOR RESIDUE CL A 401
A
CL
401
Software
4
BINDING SITE FOR RESIDUE DDQ A 402
A
DDQ
402
Software
2
BINDING SITE FOR RESIDUE DDQ A 403
A
DDQ
403
Software
1
BINDING SITE FOR RESIDUE DDQ A 404
A
DDQ
404
Software
5
BINDING SITE FOR RESIDUE DDQ A 405
A
DDQ
405
Software
1
BINDING SITE FOR RESIDUE DDQ A 406
A
DDQ
406
Software
4
BINDING SITE FOR RESIDUE DDQ A 407
A
DDQ
407
Software
3
BINDING SITE FOR RESIDUE W7A A 408
A
W7A
408
Software
17
BINDING SITE FOR RESIDUE FMN A 409
A
FMN
409
Software
26
BINDING SITE FOR RESIDUE GOL A 410
A
GOL
410
Software
8
BINDING SITE FOR RESIDUE GOL A 411
A
GOL
411
Software
7
BINDING SITE FOR RESIDUE GOL A 412
A
GOL
412
Software
3
BINDING SITE FOR RESIDUE GOL A 413
A
GOL
413
Software
8
BINDING SITE FOR RESIDUE GOL A 414
A
GOL
414
Software
6
BINDING SITE FOR RESIDUE GOL A 415
A
GOL
415
Software
4
BINDING SITE FOR RESIDUE GOL A 416
A
GOL
416
Software
7
BINDING SITE FOR RESIDUE GOL A 417
A
GOL
417
Software
9
BINDING SITE FOR RESIDUE GOL A 418
A
GOL
418
Software
5
BINDING SITE FOR RESIDUE GOL A 419
A
GOL
419
Software
10
BINDING SITE FOR RESIDUE GOL A 420
A
GOL
420
Software
8
BINDING SITE FOR RESIDUE GOL A 421
A
GOL
421
Software
5
BINDING SITE FOR RESIDUE GOL A 422
A
GOL
422
Software
7
BINDING SITE FOR RESIDUE GOL A 423
A
GOL
423
Software
5
BINDING SITE FOR RESIDUE GOL A 424
A
GOL
424
Software
6
BINDING SITE FOR RESIDUE GOL A 425
A
GOL
425
Software
7
BINDING SITE FOR RESIDUE GOL A 426
A
GOL
426
Software
4
BINDING SITE FOR RESIDUE GOL A 427
A
GOL
427
Software
5
BINDING SITE FOR RESIDUE GOL A 428
A
GOL
428
Software
3
BINDING SITE FOR RESIDUE GOL A 429
A
GOL
429
Software
4
BINDING SITE FOR RESIDUE GOL A 430
A
GOL
430
Software
6
BINDING SITE FOR RESIDUE GOL A 431
A
GOL
431
Software
10
BINDING SITE FOR RESIDUE ORO A 432
A
ORO
432
Software
11
BINDING SITE FOR RESIDUE SO4 A 433
A
SO4
433
Software
3
BINDING SITE FOR RESIDUE SO4 A 434
A
SO4
434
Software
4
BINDING SITE FOR RESIDUE SO4 A 435
A
SO4
435
Software
6
BINDING SITE FOR RESIDUE SO4 A 436
A
SO4
436
Software
1
BINDING SITE FOR RESIDUE ACT A 437
A
ACT
437
Software
2
BINDING SITE FOR RESIDUE ACT A 438
A
ACT
438
Software
8
BINDING SITE FOR RESIDUE ACT A 439
A
ACT
439
Software
7
BINDING SITE FOR RESIDUE ACT A 440
A
ACT
440
Software
5
BINDING SITE FOR RESIDUE ACT A 441
A
ACT
441
Software
1
BINDING SITE FOR RESIDUE ACT A 442
A
ACT
442
Software
3
BINDING SITE FOR RESIDUE ACT A 443
A
ACT
443
Software
2
A
GLN
165
A
GLN
159
4
2_544
A
HIS
248
A
HIS
242
4
2_544
A
ARG
298
A
ARG
292
4
1_555
A
SER
299
A
SER
293
4
1_555
A
HIS
41
A
HIS
35
2
1_555
A
THR
45
A
THR
39
2
1_555
A
DDQ
404
E
DDQ
1
1_555
A
GLN
47
A
GLN
41
5
1_555
A
GLY
48
A
GLY
42
5
1_555
A
LEU
49
A
LEU
43
5
1_555
A
DDQ
403
D
DDQ
5
1_555
A
HOH
659
SA
HOH
5
1_555
A
PHE
62
A
PHE
56
1
1_555
A
GLY
33
A
GLY
27
4
1_555
A
PHE
37
A
PHE
31
4
1_555
A
GLU
40
A
GLU
34
4
1_555
A
HIS
41
A
HIS
35
4
1_555
A
LEU
68
A
LEU
62
3
1_555
A
W7A
408
I
W7A
3
1_555
A
HOH
772
SA
HOH
3
1_555
A
MET
43
A
MET
37
17
1_555
A
GLN
47
A
GLN
41
17
1_555
A
PRO
52
A
PRO
46
17
1_555
A
ALA
55
A
ALA
49
17
1_555
A
HIS
56
A
HIS
50
17
1_555
A
ALA
59
A
ALA
53
17
1_555
A
LEU
67
A
LEU
61
17
1_555
A
LEU
68
A
LEU
62
17
1_555
A
PHE
98
A
PHE
92
17
1_555
A
VAL
134
A
VAL
128
17
1_555
A
ARG
136
A
ARG
130
17
1_555
A
TYR
356
A
TYR
350
17
1_555
A
THR
360
A
THR
354
17
1_555
A
PRO
364
A
PRO
358
17
1_555
A
DDQ
407
H
DDQ
17
1_555
A
FMN
409
J
FMN
17
1_555
A
HOH
691
SA
HOH
17
1_555
A
ALA
95
A
ALA
89
26
1_555
A
ALA
96
A
ALA
90
26
1_555
A
GLY
97
A
GLY
91
26
1_555
A
LYS
100
A
LYS
94
26
1_555
A
GLY
119
A
GLY
113
26
1_555
A
SER
120
A
SER
114
26
1_555
A
ASN
145
A
ASN
139
26
1_555
A
ASN
181
A
ASN
175
26
1_555
A
ASN
212
A
ASN
206
26
1_555
A
LYS
255
A
LYS
249
26
1_555
A
THR
283
A
THR
277
26
1_555
A
ASN
284
A
ASN
278
26
1_555
A
THR
285
A
THR
279
26
1_555
A
SER
305
A
SER
299
26
1_555
A
GLY
306
A
GLY
300
26
1_555
A
LEU
309
A
LEU
303
26
1_555
A
VAL
333
A
VAL
327
26
1_555
A
GLY
334
A
GLY
328
26
1_555
A
GLY
335
A
GLY
329
26
1_555
A
LEU
355
A
LEU
349
26
1_555
A
TYR
356
A
TYR
350
26
1_555
A
THR
357
A
THR
351
26
1_555
A
W7A
408
I
W7A
26
1_555
A
ORO
432
GA
ORO
26
1_555
A
HOH
503
SA
HOH
26
1_555
A
HOH
529
SA
HOH
26
1_555
A
LYS
307
A
LYS
301
8
6_554
A
THR
314
A
THR
308
8
1_555
A
GLN
315
A
GLN
309
8
1_555
A
ARG
318
A
ARG
312
8
1_555
A
GLU
344
A
GLU
338
8
1_555
A
HOH
524
SA
HOH
8
6_554
A
HOH
557
SA
HOH
8
6_554
A
HOH
779
SA
HOH
8
1_555
A
HIS
159
A
HIS
153
7
4_545
A
ALA
322
A
ALA
316
7
1_555
A
GLN
325
A
GLN
319
7
1_555
A
HIS
394
A
HIS
388
7
1_555
A
HOH
537
SA
HOH
7
1_555
A
HOH
574
SA
HOH
7
1_555
A
HOH
617
SA
HOH
7
1_555
A
SER
223
A
SER
217
3
1_555
A
ASP
264
A
ASP
258
3
1_555
A
HOH
674
SA
HOH
3
1_555
A
ARG
57
A
ARG
51
8
1_555
A
HIS
101
A
HIS
95
8
1_555
A
ASN
150
A
ASN
144
8
1_555
A
HIS
152
A
HIS
146
8
1_555
A
GOL
416
Q
GOL
8
1_555
A
HOH
541
SA
HOH
8
1_555
A
HOH
645
SA
HOH
8
1_555
A
HOH
731
SA
HOH
8
1_555
A
ARG
61
A
ARG
55
6
1_555
A
SER
64
A
SER
58
6
1_555
A
GLU
103
A
GLU
97
6
1_555
A
ACT
439
NA
ACT
6
1_555
A
HOH
668
SA
HOH
6
1_555
A
HOH
762
SA
HOH
6
1_555
A
ALA
219
A
ALA
213
4
1_555
A
GLY
220
A
GLY
214
4
1_555
A
ARG
222
A
ARG
216
4
1_555
A
HOH
791
SA
HOH
4
1_555
A
GLN
126
A
GLN
120
7
1_555
A
GLU
127
A
GLU
121
7
1_555
A
SER
151
A
SER
145
7
1_555
A
HIS
152
A
HIS
146
7
1_555
A
GOL
413
N
GOL
7
1_555
A
HOH
535
SA
HOH
7
1_555
A
HOH
701
SA
HOH
7
1_555
A
GLU
139
A
GLU
133
9
1_555
A
SER
155
A
SER
149
9
2_544
A
GLU
158
A
GLU
152
9
2_544
A
HIS
159
A
HIS
153
9
2_544
A
ARG
162
A
ARG
156
9
2_544
A
GLN
294
A
GLN
288
9
1_555
A
ALA
296
A
ALA
290
9
1_555
A
GOL
424
Y
GOL
9
2_544
A
HOH
754
SA
HOH
9
6_554
A
ARG
136
A
ARG
130
5
1_555
A
PRO
138
A
PRO
132
5
1_555
A
HOH
575
SA
HOH
5
1_555
A
HOH
732
SA
HOH
5
1_555
A
HOH
776
SA
HOH
5
1_555
A
ARG
241
A
ARG
235
10
1_555
A
ARG
249
A
ARG
243
10
1_555
A
PRO
250
A
PRO
244
10
1_555
A
ALA
251
A
ALA
245
10
1_555
A
ASP
278
A
ASP
272
10
1_555
A
GOL
420
U
GOL
10
1_555
A
HOH
609
SA
HOH
10
1_555
A
HOH
738
SA
HOH
10
1_555
A
HOH
796
SA
HOH
10
1_555
A
HOH
797
SA
HOH
10
1_555
A
HIS
86
A
HIS
80
8
1_555
A
ASP
207
A
ASP
201
8
1_555
A
ARG
246
A
ARG
240
8
1_555
A
VAL
247
A
VAL
241
8
1_555
A
ARG
249
A
ARG
243
8
1_555
A
GOL
419
T
GOL
8
1_555
A
ACT
438
MA
ACT
8
1_555
A
HOH
783
SA
HOH
8
1_555
A
HIS
86
A
HIS
80
5
1_555
A
LYS
87
A
LYS
81
5
1_555
A
THR
172
A
THR
166
5
1_555
A
GLU
173
A
GLU
167
5
1_555
A
HOH
804
SA
HOH
5
1_555
A
PRO
52
A
PRO
46
7
1_555
A
PRO
132
A
PRO
126
7
1_555
A
VAL
134
A
VAL
128
7
1_555
A
PHE
135
A
PHE
129
7
1_555
A
ARG
200
A
ARG
194
7
2_544
A
HOH
562
SA
HOH
7
1_555
A
HOH
659
SA
HOH
7
1_555
A
MET
30
A
MET
24
5
1_555
A
THR
32
A
THR
26
5
1_555
A
GLY
33
A
GLY
27
5
1_555
A
ARG
72
A
ARG
66
5
1_555
A
HOH
771
SA
HOH
5
1_555
A
LYS
124
A
LYS
118
6
1_555
A
SER
155
A
SER
149
6
1_555
A
GLU
197
A
GLU
191
6
1_555
A
GOL
417
R
GOL
6
3_655
A
ACT
437
LA
ACT
6
1_555
A
HOH
776
SA
HOH
6
3_655
A
PRO
69
A
PRO
63
7
1_555
A
ALA
71
A
ALA
65
7
1_555
A
MET
111
A
MET
105
7
1_555
A
PRO
364
A
PRO
358
7
1_555
A
PRO
365
A
PRO
359
7
1_555
A
GLY
368
A
GLY
362
7
1_555
A
HOH
712
SA
HOH
7
1_555
A
GLU
80
A
GLU
74
4
1_555
A
ARG
82
A
ARG
76
4
1_555
A
THR
387
A
THR
381
4
1_555
A
HOH
673
SA
HOH
4
1_555
A
VAL
272
A
VAL
266
5
1_555
A
LYS
273
A
LYS
267
5
1_555
A
GLY
276
A
GLY
270
5
1_555
A
ILE
277
A
ILE
271
5
1_555
A
VAL
328
A
VAL
322
5
1_555
A
LYS
227
A
LYS
221
3
1_555
A
ARG
231
A
ARG
225
3
1_555
A
HOH
790
SA
HOH
3
1_555
A
LYS
170
A
LYS
164
4
4_545
A
THR
261
A
THR
255
4
1_555
A
GLN
263
A
GLN
257
4
1_555
A
HOH
553
SA
HOH
4
1_555
A
MET
30
A
MET
24
6
1_555
A
ARG
372
A
ARG
366
6
1_555
A
GLU
373
A
GLU
367
6
1_555
A
ALA
376
A
ALA
370
6
1_555
A
HOH
611
SA
HOH
6
6_554
A
HOH
675
SA
HOH
6
1_555
A
GLN
141
A
GLN
135
10
1_555
A
LYS
307
A
LYS
301
10
1_555
A
SER
337
A
SER
331
10
1_555
A
ARG
347
A
ARG
341
10
6_554
A
TRP
362
A
TRP
356
10
1_555
A
LYS
369
A
LYS
363
10
1_555
A
GLN
381
A
GLN
375
10
6_554
A
HOH
540
SA
HOH
10
1_555
A
HOH
608
SA
HOH
10
6_554
A
HOH
639
SA
HOH
10
6_554
A
LYS
100
A
LYS
94
11
1_555
A
ASN
145
A
ASN
139
11
1_555
A
TYR
147
A
TYR
141
11
1_555
A
GLY
148
A
GLY
142
11
1_555
A
PHE
149
A
PHE
143
11
1_555
A
ASN
212
A
ASN
206
11
1_555
A
SER
215
A
SER
209
11
1_555
A
ASN
217
A
ASN
211
11
1_555
A
ASN
284
A
ASN
278
11
1_555
A
THR
285
A
THR
279
11
1_555
A
FMN
409
J
FMN
11
1_555
A
ARG
245
A
ARG
239
3
1_555
A
HIS
248
A
HIS
242
3
1_555
A
HOH
723
SA
HOH
3
3_655
A
ARG
160
A
ARG
154
4
1_555
A
GLN
325
A
GLN
319
4
4_655
A
ACT
439
NA
ACT
4
1_555
A
HOH
762
SA
HOH
4
1_555
A
ARG
82
A
ARG
76
6
1_555
A
VAL
83
A
VAL
77
6
1_555
A
LEU
84
A
LEU
78
6
1_555
A
GLY
85
A
GLY
79
6
1_555
A
ACT
442
QA
ACT
6
1_555
A
HOH
570
SA
HOH
6
1_555
A
ARG
249
A
ARG
243
1
1_555
A
GOL
424
Y
GOL
2
1_555
A
HOH
516
SA
HOH
2
1_555
A
GLN
168
A
GLN
162
8
1_555
A
ALA
169
A
ALA
163
8
1_555
A
THR
172
A
THR
166
8
1_555
A
LEU
205
A
LEU
199
8
1_555
A
ASP
207
A
ASP
201
8
1_555
A
GOL
420
U
GOL
8
1_555
A
HOH
522
SA
HOH
8
1_555
A
HOH
600
SA
HOH
8
1_555
A
GLU
103
A
GLU
97
7
1_555
A
ARG
160
A
ARG
154
7
1_555
A
GOL
414
O
GOL
7
1_555
A
SO4
434
IA
SO4
7
1_555
A
HOH
565
SA
HOH
7
1_555
A
HOH
583
SA
HOH
7
1_555
A
HOH
799
SA
HOH
7
1_555
A
SER
64
A
SER
58
5
1_555
A
GLY
66
A
GLY
60
5
1_555
A
GLY
107
A
GLY
101
5
1_555
A
HOH
679
SA
HOH
5
1_555
A
HOH
802
SA
HOH
5
1_555
A
HOH
547
SA
HOH
1
1_555
A
GLY
85
A
GLY
79
3
1_555
A
HIS
86
A
HIS
80
3
1_555
A
SO4
435
JA
SO4
3
1_555
A
GLU
229
A
GLU
223
2
1_555
A
ARG
232
A
ARG
226
2
1_555
154
P 32 2 1