0.013943
0.008050
0.000000
0.000000
0.016100
0.000000
0.000000
0.000000
0.017969
0.00000
0.00000
0.00000
Suzuki, H.
Tabata, K.
Morita, E.
Kawasaki, M.
Kato, R.
Dobson, R.C.J.
Yoshimori, T.
Wakatsuki, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
71.720
71.720
55.650
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
Y
234
N
doub
Y
235
N
sing
Y
236
N
sing
N
237
N
sing
Y
238
N
doub
N
239
N
sing
Y
240
N
doub
N
241
N
sing
Y
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
Y
303
N
doub
Y
304
N
sing
Y
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
UK
Structure
STRUE6
2005
0969-2126
22
47
58
10.1016/j.str.2013.09.023
24290141
Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
2014
10.2210/pdb3wam/pdb
pdb_00003wam
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95
1
CCD
2011-01-31
ADSC QUANTUM 270
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL-5A
Photon Factory
1.0000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-5A
13952.190
Microtubule-associated proteins 1A/1B light chain 3C
UNP RESIDUES 8-125
1
man
polymer
192.124
CITRIC ACID
1
syn
non-polymer
18.015
water
114
nat
water
Autophagy-related protein LC3 C, Autophagy-related ubiquitin-like modifier LC3 C, MAP1 light chain 3-like protein 3, MAP1A/MAP1B light chain 3 C, MAP1A/MAP1B LC3 C, Microtubule-associated protein 1 light chain 3 gamma
no
no
GSPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAF
YLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF
GSPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAF
YLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MAP1LC3C
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
PLASMID
pET30
1
2.96
58.46
VAPOR DIFFUSION, HANGING DROP
5.0
0.5M di-Ammonium hydrogen citrate, 10% PEG 3350, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-12-25
1
1
2014-03-12
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2013-05-06
REL
REL
CIT
CITRIC ACID
HOH
water
3VTU
PDB
experimental model
CIT
201
2
CIT
CIT
201
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
n
1
-4
A
n
2
-3
A
n
3
-2
A
n
4
-1
A
n
5
0
A
ARG
1
n
6
ARG
1
A
PRO
2
n
7
PRO
2
A
PHE
3
n
8
PHE
3
A
LYS
4
n
9
LYS
4
A
GLN
5
n
10
GLN
5
A
ARG
6
n
11
ARG
6
A
LYS
7
n
12
LYS
7
A
SER
8
n
13
SER
8
A
LEU
9
n
14
LEU
9
A
ALA
10
n
15
ALA
10
A
ILE
11
n
16
ILE
11
A
ARG
12
n
17
ARG
12
A
GLN
13
n
18
GLN
13
A
GLU
14
n
19
GLU
14
A
GLU
15
n
20
GLU
15
A
VAL
16
n
21
VAL
16
A
ALA
17
n
22
ALA
17
A
GLY
18
n
23
GLY
18
A
ILE
19
n
24
ILE
19
A
ARG
20
n
25
ARG
20
A
ALA
21
n
26
ALA
21
A
LYS
22
n
27
LYS
22
A
PHE
23
n
28
PHE
23
A
PRO
24
n
29
PRO
24
A
ASN
25
n
30
ASN
25
A
LYS
26
n
31
LYS
26
A
ILE
27
n
32
ILE
27
A
PRO
28
n
33
PRO
28
A
VAL
29
n
34
VAL
29
A
VAL
30
n
35
VAL
30
A
VAL
31
n
36
VAL
31
A
GLU
32
n
37
GLU
32
A
ARG
33
n
38
ARG
33
A
TYR
34
n
39
TYR
34
A
PRO
35
n
40
PRO
35
A
ARG
36
n
41
ARG
36
A
GLU
37
n
42
GLU
37
A
THR
38
n
43
THR
38
A
PHE
39
n
44
PHE
39
A
LEU
40
n
45
LEU
40
A
PRO
41
n
46
PRO
41
A
PRO
42
n
47
PRO
42
A
LEU
43
n
48
LEU
43
A
ASP
44
n
49
ASP
44
A
LYS
45
n
50
LYS
45
A
THR
46
n
51
THR
46
A
LYS
47
n
52
LYS
47
A
PHE
48
n
53
PHE
48
A
LEU
49
n
54
LEU
49
A
VAL
50
n
55
VAL
50
A
PRO
51
n
56
PRO
51
A
GLN
52
n
57
GLN
52
A
GLU
53
n
58
GLU
53
A
LEU
54
n
59
LEU
54
A
THR
55
n
60
THR
55
A
MET
56
n
61
MET
56
A
THR
57
n
62
THR
57
A
GLN
58
n
63
GLN
58
A
PHE
59
n
64
PHE
59
A
LEU
60
n
65
LEU
60
A
SER
61
n
66
SER
61
A
ILE
62
n
67
ILE
62
A
ILE
63
n
68
ILE
63
A
ARG
64
n
69
ARG
64
A
SER
65
n
70
SER
65
A
ARG
66
n
71
ARG
66
A
MET
67
n
72
MET
67
A
VAL
68
n
73
VAL
68
A
LEU
69
n
74
LEU
69
A
ARG
70
n
75
ARG
70
A
ALA
71
n
76
ALA
71
A
THR
72
n
77
THR
72
A
GLU
73
n
78
GLU
73
A
ALA
74
n
79
ALA
74
A
PHE
75
n
80
PHE
75
A
TYR
76
n
81
TYR
76
A
LEU
77
n
82
LEU
77
A
LEU
78
n
83
LEU
78
A
VAL
79
n
84
VAL
79
A
ASN
80
n
85
ASN
80
A
ASN
81
n
86
ASN
81
A
LYS
82
n
87
LYS
82
A
SER
83
n
88
SER
83
A
LEU
84
n
89
LEU
84
A
VAL
85
n
90
VAL
85
A
SER
86
n
91
SER
86
A
MET
87
n
92
MET
87
A
SER
88
n
93
SER
88
A
ALA
89
n
94
ALA
89
A
THR
90
n
95
THR
90
A
MET
91
n
96
MET
91
A
ALA
92
n
97
ALA
92
A
GLU
93
n
98
GLU
93
A
ILE
94
n
99
ILE
94
A
TYR
95
n
100
TYR
95
A
ARG
96
n
101
ARG
96
A
ASP
97
n
102
ASP
97
A
TYR
98
n
103
TYR
98
A
LYS
99
n
104
LYS
99
A
ASP
100
n
105
ASP
100
A
GLU
101
n
106
GLU
101
A
ASP
102
n
107
ASP
102
A
GLY
103
n
108
GLY
103
A
PHE
104
n
109
PHE
104
A
VAL
105
n
110
VAL
105
A
TYR
106
n
111
TYR
106
A
MET
107
n
112
MET
107
A
THR
108
n
113
THR
108
A
TYR
109
n
114
TYR
109
A
ALA
110
n
115
ALA
110
A
SER
111
n
116
SER
111
A
GLN
112
n
117
GLN
112
A
GLU
113
n
118
GLU
113
A
THR
114
n
119
THR
114
A
PHE
115
n
120
PHE
115
A
0.1829
0.0743
0.0518
1.0727
-0.4205
0.5402
-0.0334
0.0201
0.0492
-0.0584
-0.0316
-0.0489
0.1238
0.0088
0.0651
0.0780
-0.0046
0.0184
0.0216
0.0075
0.0285
refined
-30.8184
6.6729
5.7213
X-RAY DIFFRACTION
A
1
A
115
X-RAY DIFFRACTION
1
A
201
A
201
X-RAY DIFFRACTION
1
A
301
A
414
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1430
-10
12240
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
x-y,-y,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
37.1000000000
A
O
PHE
48
A
O
PHE
53
A
N
VAL
29
A
N
VAL
34
A
N
VAL
30
A
N
VAL
35
A
O
MET
107
A
O
MET
112
A
O
THR
108
A
O
THR
113
A
N
LEU
78
A
N
LEU
83
1
A
GLY
-4
A
GLY
1
1
Y
1
A
SER
-3
A
SER
2
1
Y
1
A
PRO
-2
A
PRO
3
1
Y
1
A
SER
-1
A
SER
4
1
Y
1
A
VAL
0
A
VAL
5
1
Y
1
A
LYS
82
-145.99
-9.99
23.672
0.46
0.23
0.00
0.46
0.00
-0.69
0.960
0.939
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21129
0.17161
0.17358
1.75
27.83
860
16082
5.1
99.62
4.111
0.060
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.093
0.097
0.80
0.80
1.40
3VTU
MAXIMUM LIKELIHOOD
MASK
1.75
27.83
114
1077
13
0
950
0.034
0.022
982
2.446
1.995
1325
6.172
5.000
114
30.909
22.444
45
15.254
15.000
182
16.606
15.000
10
0.188
0.200
146
0.015
0.021
734
1.710
1.500
579
2.828
2.000
947
4.545
3.000
403
7.232
4.500
378
0.280
0.244
1.795
60
1168
20
99.92
1.75
27.83
3WAM
16985
0.093
1
16.2
99.8
0.366
1.75
1.84
6.3
2430
1
100
phasing
MOLREP
refinement
REFMAC
5.5.0109
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of human LC3C_8-125
1
N
N
2
N
N
3
N
N
A
PRO
2
A
PRO
7
HELX_P
A
LYS
7
A
LYS
12
1
1
6
A
SER
8
A
SER
13
HELX_P
A
PHE
23
A
PHE
28
1
2
16
A
THR
55
A
THR
60
HELX_P
A
MET
67
A
MET
72
1
3
13
A
THR
90
A
THR
95
HELX_P
A
LYS
99
A
LYS
104
1
4
10
PROTEIN TRANSPORT
UBIQUITIN-LIKE FOLD, AUTOPHAGY, PROTEIN TRANSPORT
MLP3C_HUMAN
UNP
1
8
Q9BXW4
PSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYL
LVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF
8
125
3WAM
-2
115
Q9BXW4
A
1
3
120
1
expression tag
GLY
-4
3WAM
A
Q9BXW4
UNP
1
1
expression tag
SER
-3
3WAM
A
Q9BXW4
UNP
2
4
anti-parallel
parallel
anti-parallel
A
LYS
47
A
LYS
52
A
PRO
51
A
PRO
56
A
LYS
26
A
LYS
31
A
ARG
33
A
ARG
38
A
VAL
105
A
VAL
110
A
ALA
110
A
ALA
115
A
TYR
76
A
TYR
81
A
VAL
79
A
VAL
84
BINDING SITE FOR RESIDUE CIT A 201
A
CIT
201
Software
9
A
LYS
45
A
LYS
50
9
1_555
A
PHE
48
A
PHE
53
9
1_555
A
LEU
49
A
LEU
54
9
1_555
A
ILE
62
A
ILE
67
9
1_555
A
ARG
96
A
ARG
101
9
3_454
A
ASP
97
A
ASP
102
9
3_454
A
HOH
323
C
HOH
9
1_555
A
HOH
372
C
HOH
9
3_454
A
HOH
414
C
HOH
9
1_555
152
P 31 2 1