0.014447
0.000000
0.000000
0.000000
0.014447
0.000000
0.000000
0.000000
0.006984
0.00000
0.00000
0.00000
Niwa, H.
Shirouzu, M.
Yokoyama, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
69.217
69.217
143.181
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C17 H17 N7
319.364
4-[4-(1H-benzimidazol-2-yl)piperidin-1-yl]-1H-pyrazolo[3,4-d]pyrimidine
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H10 N O6 P
199.099
n
PHOSPHOTHREONINE
PHOSPHONOTHREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
NE
J.Struct.Funct.Genom.
1345-711X
15
153
164
10.1007/s10969-014-9188-8
25078151
Crystal structures of the S6K1 kinase domain in complexes with inhibitors
2014
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-04-25
RAYONIX MX225HE
Si double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
BL41XU
SPring-8
1.000
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
37178.816
Ribosomal protein S6 kinase beta-1
2.7.11.1
UNP residues 78-399
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
319.364
4-[4-(1H-benzimidazol-2-yl)piperidin-1-yl]-1H-pyrazolo[3,4-d]pyrimidine
1
syn
non-polymer
18.015
water
110
nat
water
S6K-beta-1, S6K1, 70 kDa ribosomal protein S6 kinase 1, Ribosomal protein S6 kinase I, Serine/threonine-protein kinase 14A, p70 ribosomal S6 kinase alpha
no
yes
GSFTSSGSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV
KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQG
HVKLTDFGLCKESIHDGTVTH(TPO)FCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKIL
KCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKF
TRQTPVDSPDDST
GSFTSSGSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV
KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQG
HVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKL
NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQT
PVDSPDDST
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
fall armyworm
sample
RPS6KB1
9606
Homo sapiens
7108
Spodoptera frugiperda
Baculovirus
1
2.31
46.67
VAPOR DIFFUSION, SITTING DROP
8.5
0.1M Tris-HCl, 2.9-3.3M sodium formate, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
repository
Initial release
Database references
Database references
1
0
2014-08-06
1
1
2014-08-13
1
2
2014-10-29
PDBJ
Y
PDBJ
2013-07-17
REL
REL
ZN
ZINC ION
FZ8
4-[4-(1H-benzimidazol-2-yl)piperidin-1-yl]-1H-pyrazolo[3,4-d]pyrimidine
HOH
water
ZN
401
2
ZN
ZN
401
A
FZ8
501
3
FZ8
FZ8
402
A
HOH
1
4
HOH
HOH
501
A
HOH
2
4
HOH
HOH
502
A
HOH
3
4
HOH
HOH
503
A
HOH
4
4
HOH
HOH
504
A
HOH
5
4
HOH
HOH
505
A
HOH
6
4
HOH
HOH
506
A
HOH
7
4
HOH
HOH
507
A
HOH
8
4
HOH
HOH
508
A
HOH
9
4
HOH
HOH
509
A
HOH
10
4
HOH
HOH
510
A
HOH
11
4
HOH
HOH
511
A
HOH
12
4
HOH
HOH
512
A
HOH
13
4
HOH
HOH
513
A
HOH
14
4
HOH
HOH
514
A
HOH
15
4
HOH
HOH
515
A
HOH
16
4
HOH
HOH
516
A
HOH
17
4
HOH
HOH
517
A
HOH
18
4
HOH
HOH
518
A
HOH
19
4
HOH
HOH
519
A
HOH
20
4
HOH
HOH
520
A
HOH
21
4
HOH
HOH
521
A
HOH
22
4
HOH
HOH
522
A
HOH
23
4
HOH
HOH
523
A
HOH
24
4
HOH
HOH
524
A
HOH
25
4
HOH
HOH
525
A
HOH
26
4
HOH
HOH
526
A
HOH
27
4
HOH
HOH
527
A
HOH
28
4
HOH
HOH
528
A
HOH
29
4
HOH
HOH
529
A
HOH
30
4
HOH
HOH
530
A
HOH
31
4
HOH
HOH
531
A
HOH
32
4
HOH
HOH
532
A
HOH
33
4
HOH
HOH
533
A
HOH
34
4
HOH
HOH
534
A
HOH
35
4
HOH
HOH
535
A
HOH
36
4
HOH
HOH
536
A
HOH
37
4
HOH
HOH
537
A
HOH
38
4
HOH
HOH
538
A
HOH
39
4
HOH
HOH
539
A
HOH
40
4
HOH
HOH
540
A
HOH
41
4
HOH
HOH
541
A
HOH
42
4
HOH
HOH
542
A
HOH
43
4
HOH
HOH
543
A
HOH
44
4
HOH
HOH
544
A
HOH
45
4
HOH
HOH
545
A
HOH
46
4
HOH
HOH
546
A
HOH
47
4
HOH
HOH
547
A
HOH
48
4
HOH
HOH
548
A
HOH
49
4
HOH
HOH
549
A
HOH
50
4
HOH
HOH
550
A
HOH
51
4
HOH
HOH
551
A
HOH
52
4
HOH
HOH
552
A
HOH
53
4
HOH
HOH
553
A
HOH
54
4
HOH
HOH
554
A
HOH
55
4
HOH
HOH
555
A
HOH
56
4
HOH
HOH
556
A
HOH
57
4
HOH
HOH
557
A
HOH
58
4
HOH
HOH
558
A
HOH
59
4
HOH
HOH
559
A
HOH
60
4
HOH
HOH
560
A
HOH
61
4
HOH
HOH
561
A
HOH
62
4
HOH
HOH
562
A
HOH
63
4
HOH
HOH
563
A
HOH
64
4
HOH
HOH
564
A
HOH
65
4
HOH
HOH
565
A
HOH
66
4
HOH
HOH
566
A
HOH
67
4
HOH
HOH
567
A
HOH
68
4
HOH
HOH
568
A
HOH
69
4
HOH
HOH
569
A
HOH
70
4
HOH
HOH
570
A
HOH
71
4
HOH
HOH
571
A
HOH
72
4
HOH
HOH
572
A
HOH
73
4
HOH
HOH
573
A
HOH
74
4
HOH
HOH
574
A
HOH
75
4
HOH
HOH
575
A
HOH
76
4
HOH
HOH
576
A
HOH
77
4
HOH
HOH
577
A
HOH
78
4
HOH
HOH
578
A
HOH
79
4
HOH
HOH
579
A
HOH
80
4
HOH
HOH
580
A
HOH
81
4
HOH
HOH
581
A
HOH
82
4
HOH
HOH
582
A
HOH
83
4
HOH
HOH
583
A
HOH
84
4
HOH
HOH
584
A
HOH
85
4
HOH
HOH
585
A
HOH
86
4
HOH
HOH
586
A
HOH
87
4
HOH
HOH
587
A
HOH
88
4
HOH
HOH
588
A
HOH
89
4
HOH
HOH
589
A
HOH
90
4
HOH
HOH
590
A
HOH
91
4
HOH
HOH
591
A
HOH
92
4
HOH
HOH
592
A
HOH
93
4
HOH
HOH
593
A
HOH
94
4
HOH
HOH
594
A
HOH
95
4
HOH
HOH
595
A
HOH
96
4
HOH
HOH
596
A
HOH
97
4
HOH
HOH
597
A
HOH
98
4
HOH
HOH
598
A
HOH
99
4
HOH
HOH
599
A
HOH
100
4
HOH
HOH
600
A
HOH
101
4
HOH
HOH
601
A
HOH
102
4
HOH
HOH
602
A
HOH
103
4
HOH
HOH
603
A
HOH
104
4
HOH
HOH
604
A
HOH
105
4
HOH
HOH
605
A
HOH
106
4
HOH
HOH
606
A
HOH
107
4
HOH
HOH
607
A
HOH
108
4
HOH
HOH
608
A
HOH
109
4
HOH
HOH
609
A
HOH
110
4
HOH
HOH
610
A
n
1
71
A
n
2
72
A
n
3
73
A
n
4
74
A
n
5
75
A
n
6
76
A
n
7
77
A
n
8
78
A
n
9
79
A
n
10
80
A
n
11
81
A
n
12
82
A
n
13
83
A
n
14
84
A
LYS
85
n
15
LYS
85
A
ILE
86
n
16
ILE
86
A
ARG
87
n
17
ARG
87
A
PRO
88
n
18
PRO
88
A
GLU
89
n
19
GLU
89
A
CYS
90
n
20
CYS
90
A
PHE
91
n
21
PHE
91
A
GLU
92
n
22
GLU
92
A
LEU
93
n
23
LEU
93
A
LEU
94
n
24
LEU
94
A
ARG
95
n
25
ARG
95
A
VAL
96
n
26
VAL
96
A
LEU
97
n
27
LEU
97
A
GLY
98
n
28
GLY
98
A
LYS
99
n
29
LYS
99
A
GLY
100
n
30
GLY
100
A
GLY
101
n
31
GLY
101
A
TYR
102
n
32
TYR
102
A
GLY
103
n
33
GLY
103
A
LYS
104
n
34
LYS
104
A
VAL
105
n
35
VAL
105
A
PHE
106
n
36
PHE
106
A
GLN
107
n
37
GLN
107
A
VAL
108
n
38
VAL
108
A
ARG
109
n
39
ARG
109
A
LYS
110
n
40
LYS
110
A
VAL
111
n
41
VAL
111
A
THR
112
n
42
THR
112
A
GLY
113
n
43
GLY
113
A
ALA
114
n
44
ALA
114
A
ASN
115
n
45
ASN
115
A
THR
116
n
46
THR
116
A
GLY
117
n
47
GLY
117
A
LYS
118
n
48
LYS
118
A
ILE
119
n
49
ILE
119
A
PHE
120
n
50
PHE
120
A
ALA
121
n
51
ALA
121
A
MET
122
n
52
MET
122
A
LYS
123
n
53
LYS
123
A
VAL
124
n
54
VAL
124
A
LEU
125
n
55
LEU
125
A
LYS
126
n
56
LYS
126
A
LYS
127
n
57
LYS
127
A
n
58
128
A
n
59
129
A
n
60
130
A
n
61
131
A
n
62
132
A
n
63
133
A
n
64
134
A
n
65
135
A
n
66
136
A
n
67
137
A
n
68
138
A
n
69
139
A
THR
140
n
70
THR
140
A
LYS
141
n
71
LYS
141
A
ALA
142
n
72
ALA
142
A
GLU
143
n
73
GLU
143
A
ARG
144
n
74
ARG
144
A
ASN
145
n
75
ASN
145
A
ILE
146
n
76
ILE
146
A
LEU
147
n
77
LEU
147
A
GLU
148
n
78
GLU
148
A
GLU
149
n
79
GLU
149
A
VAL
150
n
80
VAL
150
A
LYS
151
n
81
LYS
151
A
HIS
152
n
82
HIS
152
A
PRO
153
n
83
PRO
153
A
PHE
154
n
84
PHE
154
A
ILE
155
n
85
ILE
155
A
VAL
156
n
86
VAL
156
A
ASP
157
n
87
ASP
157
A
LEU
158
n
88
LEU
158
A
ILE
159
n
89
ILE
159
A
TYR
160
n
90
TYR
160
A
ALA
161
n
91
ALA
161
A
PHE
162
n
92
PHE
162
A
GLN
163
n
93
GLN
163
A
THR
164
n
94
THR
164
A
GLY
165
n
95
GLY
165
A
GLY
166
n
96
GLY
166
A
LYS
167
n
97
LYS
167
A
LEU
168
n
98
LEU
168
A
TYR
169
n
99
TYR
169
A
LEU
170
n
100
LEU
170
A
ILE
171
n
101
ILE
171
A
LEU
172
n
102
LEU
172
A
GLU
173
n
103
GLU
173
A
TYR
174
n
104
TYR
174
A
LEU
175
n
105
LEU
175
A
SER
176
n
106
SER
176
A
GLY
177
n
107
GLY
177
A
GLY
178
n
108
GLY
178
A
GLU
179
n
109
GLU
179
A
LEU
180
n
110
LEU
180
A
PHE
181
n
111
PHE
181
A
MET
182
n
112
MET
182
A
GLN
183
n
113
GLN
183
A
LEU
184
n
114
LEU
184
A
GLU
185
n
115
GLU
185
A
ARG
186
n
116
ARG
186
A
GLU
187
n
117
GLU
187
A
GLY
188
n
118
GLY
188
A
ILE
189
n
119
ILE
189
A
PHE
190
n
120
PHE
190
A
MET
191
n
121
MET
191
A
GLU
192
n
122
GLU
192
A
ASP
193
n
123
ASP
193
A
THR
194
n
124
THR
194
A
ALA
195
n
125
ALA
195
A
CYS
196
n
126
CYS
196
A
PHE
197
n
127
PHE
197
A
TYR
198
n
128
TYR
198
A
LEU
199
n
129
LEU
199
A
ALA
200
n
130
ALA
200
A
GLU
201
n
131
GLU
201
A
ILE
202
n
132
ILE
202
A
SER
203
n
133
SER
203
A
MET
204
n
134
MET
204
A
ALA
205
n
135
ALA
205
A
LEU
206
n
136
LEU
206
A
GLY
207
n
137
GLY
207
A
HIS
208
n
138
HIS
208
A
LEU
209
n
139
LEU
209
A
HIS
210
n
140
HIS
210
A
GLN
211
n
141
GLN
211
A
LYS
212
n
142
LYS
212
A
GLY
213
n
143
GLY
213
A
ILE
214
n
144
ILE
214
A
ILE
215
n
145
ILE
215
A
TYR
216
n
146
TYR
216
A
ARG
217
n
147
ARG
217
A
ASP
218
n
148
ASP
218
A
LEU
219
n
149
LEU
219
A
LYS
220
n
150
LYS
220
A
PRO
221
n
151
PRO
221
A
GLU
222
n
152
GLU
222
A
ASN
223
n
153
ASN
223
A
ILE
224
n
154
ILE
224
A
MET
225
n
155
MET
225
A
LEU
226
n
156
LEU
226
A
ASN
227
n
157
ASN
227
A
HIS
228
n
158
HIS
228
A
GLN
229
n
159
GLN
229
A
GLY
230
n
160
GLY
230
A
HIS
231
n
161
HIS
231
A
VAL
232
n
162
VAL
232
A
LYS
233
n
163
LYS
233
A
LEU
234
n
164
LEU
234
A
THR
235
n
165
THR
235
A
ASP
236
n
166
ASP
236
A
PHE
237
n
167
PHE
237
A
GLY
238
n
168
GLY
238
A
LEU
239
n
169
LEU
239
A
CYS
240
n
170
CYS
240
A
LYS
241
n
171
LYS
241
A
GLU
242
n
172
GLU
242
A
SER
243
n
173
SER
243
A
ILE
244
n
174
ILE
244
A
HIS
245
n
175
HIS
245
A
ASP
246
n
176
ASP
246
A
GLY
247
n
177
GLY
247
A
THR
248
n
178
THR
248
A
VAL
249
n
179
VAL
249
A
THR
250
n
180
THR
250
A
HIS
251
n
181
HIS
251
A
TPO
252
n
182
TPO
252
A
PHE
253
n
183
PHE
253
A
CYS
254
n
184
CYS
254
A
GLY
255
n
185
GLY
255
A
THR
256
n
186
THR
256
A
ILE
257
n
187
ILE
257
A
GLU
258
n
188
GLU
258
A
TYR
259
n
189
TYR
259
A
MET
260
n
190
MET
260
A
ALA
261
n
191
ALA
261
A
PRO
262
n
192
PRO
262
A
GLU
263
n
193
GLU
263
A
ILE
264
n
194
ILE
264
A
LEU
265
n
195
LEU
265
A
MET
266
n
196
MET
266
A
ARG
267
n
197
ARG
267
A
SER
268
n
198
SER
268
A
GLY
269
n
199
GLY
269
A
HIS
270
n
200
HIS
270
A
ASN
271
n
201
ASN
271
A
ARG
272
n
202
ARG
272
A
ALA
273
n
203
ALA
273
A
VAL
274
n
204
VAL
274
A
ASP
275
n
205
ASP
275
A
TRP
276
n
206
TRP
276
A
TRP
277
n
207
TRP
277
A
SER
278
n
208
SER
278
A
LEU
279
n
209
LEU
279
A
GLY
280
n
210
GLY
280
A
ALA
281
n
211
ALA
281
A
LEU
282
n
212
LEU
282
A
MET
283
n
213
MET
283
A
TYR
284
n
214
TYR
284
A
ASP
285
n
215
ASP
285
A
MET
286
n
216
MET
286
A
LEU
287
n
217
LEU
287
A
THR
288
n
218
THR
288
A
GLY
289
n
219
GLY
289
A
ALA
290
n
220
ALA
290
A
PRO
291
n
221
PRO
291
A
PRO
292
n
222
PRO
292
A
PHE
293
n
223
PHE
293
A
THR
294
n
224
THR
294
A
GLY
295
n
225
GLY
295
A
GLU
296
n
226
GLU
296
A
ASN
297
n
227
ASN
297
A
ARG
298
n
228
ARG
298
A
LYS
299
n
229
LYS
299
A
LYS
300
n
230
LYS
300
A
THR
301
n
231
THR
301
A
ILE
302
n
232
ILE
302
A
ASP
303
n
233
ASP
303
A
LYS
304
n
234
LYS
304
A
ILE
305
n
235
ILE
305
A
LEU
306
n
236
LEU
306
A
LYS
307
n
237
LYS
307
A
CYS
308
n
238
CYS
308
A
LYS
309
n
239
LYS
309
A
LEU
310
n
240
LEU
310
A
ASN
311
n
241
ASN
311
A
LEU
312
n
242
LEU
312
A
PRO
313
n
243
PRO
313
A
PRO
314
n
244
PRO
314
A
TYR
315
n
245
TYR
315
A
LEU
316
n
246
LEU
316
A
THR
317
n
247
THR
317
A
GLN
318
n
248
GLN
318
A
GLU
319
n
249
GLU
319
A
ALA
320
n
250
ALA
320
A
ARG
321
n
251
ARG
321
A
ASP
322
n
252
ASP
322
A
LEU
323
n
253
LEU
323
A
LEU
324
n
254
LEU
324
A
LYS
325
n
255
LYS
325
A
LYS
326
n
256
LYS
326
A
LEU
327
n
257
LEU
327
A
LEU
328
n
258
LEU
328
A
LYS
329
n
259
LYS
329
A
ARG
330
n
260
ARG
330
A
ASN
331
n
261
ASN
331
A
ALA
332
n
262
ALA
332
A
ALA
333
n
263
ALA
333
A
SER
334
n
264
SER
334
A
ARG
335
n
265
ARG
335
A
LEU
336
n
266
LEU
336
A
GLY
337
n
267
GLY
337
A
ALA
338
n
268
ALA
338
A
GLY
339
n
269
GLY
339
A
PRO
340
n
270
PRO
340
A
GLY
341
n
271
GLY
341
A
ASP
342
n
272
ASP
342
A
ALA
343
n
273
ALA
343
A
GLY
344
n
274
GLY
344
A
GLU
345
n
275
GLU
345
A
VAL
346
n
276
VAL
346
A
GLN
347
n
277
GLN
347
A
ALA
348
n
278
ALA
348
A
HIS
349
n
279
HIS
349
A
PRO
350
n
280
PRO
350
A
PHE
351
n
281
PHE
351
A
PHE
352
n
282
PHE
352
A
ARG
353
n
283
ARG
353
A
HIS
354
n
284
HIS
354
A
ILE
355
n
285
ILE
355
A
ASN
356
n
286
ASN
356
A
TRP
357
n
287
TRP
357
A
GLU
358
n
288
GLU
358
A
GLU
359
n
289
GLU
359
A
LEU
360
n
290
LEU
360
A
LEU
361
n
291
LEU
361
A
ALA
362
n
292
ALA
362
A
ARG
363
n
293
ARG
363
A
LYS
364
n
294
LYS
364
A
VAL
365
n
295
VAL
365
A
GLU
366
n
296
GLU
366
A
PRO
367
n
297
PRO
367
A
PRO
368
n
298
PRO
368
A
PHE
369
n
299
PHE
369
A
LYS
370
n
300
LYS
370
A
PRO
371
n
301
PRO
371
A
LEU
372
n
302
LEU
372
A
LEU
373
n
303
LEU
373
A
GLN
374
n
304
GLN
374
A
n
305
375
A
n
306
376
A
n
307
377
A
n
308
378
A
n
309
379
A
n
310
380
A
n
311
381
A
n
312
382
A
n
313
383
A
n
314
384
A
n
315
385
A
n
316
386
A
n
317
387
A
n
318
388
A
n
319
389
A
n
320
390
A
n
321
391
A
n
322
392
A
n
323
393
A
n
324
394
A
n
325
395
A
n
326
396
A
n
327
397
A
n
328
398
A
n
329
399
A
3.6715
0.1775
1.3977
7.9497
0.7626
8.0185
0.0695
-0.5321
0.1810
0.3785
0.1500
-0.4815
0.2802
0.7662
-0.1857
0.2201
0.0059
0.0279
0.4478
-0.0986
0.2724
refined
-3.0487
5.4276
-16.4602
X-RAY DIFFRACTION
5.1181
-2.2059
-2.6803
3.4004
1.4496
3.4171
-0.2982
-0.2661
-0.4946
0.1761
0.0640
0.1486
0.3262
0.3049
0.2288
0.2811
-0.0137
0.0387
0.3097
-0.0079
0.2604
refined
-18.3748
7.4868
-7.3579
X-RAY DIFFRACTION
3.4989
-2.1320
-1.8574
3.1850
1.9965
5.1331
-0.0978
-0.1353
-0.2175
0.1419
0.0478
0.1349
-0.0172
0.0281
0.0317
0.2317
-0.0282
0.0646
0.3207
0.0198
0.2606
refined
-28.0798
16.7783
-0.6877
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ 85:126 )
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 127:234 )
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 235:374 )
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
251
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
254
A
SG
CYS
184
1_555
105.5
A
HIS
251
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
A
HIS
245
A
ND1
HIS
175
1_555
132.2
A
CYS
254
A
SG
CYS
184
1_555
A
ZN
401
B
ZN
ZN
1_555
A
HIS
245
A
ND1
HIS
175
1_555
110.0
A
HIS
251
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
240
A
SG
CYS
170
1_555
92.1
A
CYS
254
A
SG
CYS
184
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
240
A
SG
CYS
170
1_555
113.2
A
HIS
245
A
ND1
HIS
175
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
240
A
SG
CYS
170
1_555
102.0
A
TPO
252
PHOSPHOTHREONINE
A
TPO
182
THR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
97
A
N
LEU
27
A
O
VAL
105
A
O
VAL
35
A
N
LYS
104
A
N
LYS
34
A
O
VAL
124
A
O
VAL
54
A
N
ALA
121
A
N
ALA
51
A
O
LEU
172
A
O
LEU
102
A
O
TYR
169
A
O
TYR
99
A
N
PHE
162
A
N
PHE
92
A
N
MET
225
A
N
MET
155
A
O
LYS
233
A
O
LYS
163
1
A
CG
LYS
85
A
CG
LYS
15
1
Y
1
A
CD
LYS
85
A
CD
LYS
15
1
Y
1
A
CE
LYS
85
A
CE
LYS
15
1
Y
1
A
NZ
LYS
85
A
NZ
LYS
15
1
Y
1
A
CG
LYS
127
A
CG
LYS
57
1
Y
1
A
CD
LYS
127
A
CD
LYS
57
1
Y
1
A
CE
LYS
127
A
CE
LYS
57
1
Y
1
A
NZ
LYS
127
A
NZ
LYS
57
1
Y
1
A
CB
THR
248
A
CB
THR
178
1
Y
1
A
OG1
THR
248
A
OG1
THR
178
1
Y
1
A
CG2
THR
248
A
CG2
THR
178
1
Y
1
A
CB
VAL
249
A
CB
VAL
179
1
Y
1
A
CG1
VAL
249
A
CG1
VAL
179
1
Y
1
A
CG2
VAL
249
A
CG2
VAL
179
1
Y
1
A
GLY
71
A
GLY
1
1
Y
1
A
SER
72
A
SER
2
1
Y
1
A
PHE
73
A
PHE
3
1
Y
1
A
THR
74
A
THR
4
1
Y
1
A
SER
75
A
SER
5
1
Y
1
A
SER
76
A
SER
6
1
Y
1
A
GLY
77
A
GLY
7
1
Y
1
A
SER
78
A
SER
8
1
Y
1
A
VAL
79
A
VAL
9
1
Y
1
A
ASN
80
A
ASN
10
1
Y
1
A
ARG
81
A
ARG
11
1
Y
1
A
GLY
82
A
GLY
12
1
Y
1
A
PRO
83
A
PRO
13
1
Y
1
A
GLU
84
A
GLU
14
1
Y
1
A
ALA
128
A
ALA
58
1
Y
1
A
MET
129
A
MET
59
1
Y
1
A
ILE
130
A
ILE
60
1
Y
1
A
VAL
131
A
VAL
61
1
Y
1
A
ARG
132
A
ARG
62
1
Y
1
A
ASN
133
A
ASN
63
1
Y
1
A
ALA
134
A
ALA
64
1
Y
1
A
LYS
135
A
LYS
65
1
Y
1
A
ASP
136
A
ASP
66
1
Y
1
A
THR
137
A
THR
67
1
Y
1
A
ALA
138
A
ALA
68
1
Y
1
A
HIS
139
A
HIS
69
1
Y
1
A
SER
375
A
SER
305
1
Y
1
A
GLU
376
A
GLU
306
1
Y
1
A
GLU
377
A
GLU
307
1
Y
1
A
ASP
378
A
ASP
308
1
Y
1
A
VAL
379
A
VAL
309
1
Y
1
A
SER
380
A
SER
310
1
Y
1
A
GLN
381
A
GLN
311
1
Y
1
A
PHE
382
A
PHE
312
1
Y
1
A
ASP
383
A
ASP
313
1
Y
1
A
SER
384
A
SER
314
1
Y
1
A
LYS
385
A
LYS
315
1
Y
1
A
PHE
386
A
PHE
316
1
Y
1
A
THR
387
A
THR
317
1
Y
1
A
ARG
388
A
ARG
318
1
Y
1
A
GLN
389
A
GLN
319
1
Y
1
A
THR
390
A
THR
320
1
Y
1
A
PRO
391
A
PRO
321
1
Y
1
A
VAL
392
A
VAL
322
1
Y
1
A
ASP
393
A
ASP
323
1
Y
1
A
SER
394
A
SER
324
1
Y
1
A
PRO
395
A
PRO
325
1
Y
1
A
ASP
396
A
ASP
326
1
Y
1
A
ASP
397
A
ASP
327
1
Y
1
A
SER
398
A
SER
328
1
Y
1
A
THR
399
A
THR
329
1
Y
1
A
ARG
217
73.10
-44.42
1
A
VAL
249
-141.26
-76.92
1
A
ASN
271
-144.55
-158.60
1
A
ASP
342
43.90
-121.83
154.670
49.7192
21.330
0.2330
0.1748
0.1775
2.0990
40.4040
1946
20901
20901
5.0500
99.3500
0.2400
RANDOM
1
1.360
MOLECULAR REPLACEMENT
21.7500
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
2.0990
40.4040
110
2346
25
0
2211
0.008
2300
1.054
3101
0.045
330
0.005
392
16.465
876
0.3168
0.2841
2.1519
143
2582
2725
14
99.0000
0.2678
0.2492
2.2101
125
2615
2740
14
99.0000
0.2554
0.2259
2.2751
144
2598
2742
14
99.0000
0.2714
0.2147
2.3486
151
2570
2721
14
99.0000
0.2373
0.1913
2.4325
158
2590
2748
14
99.0000
0.2090
0.1867
2.5299
143
2612
2755
14
99.0000
0.2638
0.1942
2.6450
157
2632
2789
14
99.0000
0.2572
0.1906
2.7844
133
2602
2735
14
99.0000
0.2480
0.1867
2.9588
154
2610
2764
14
99.0000
0.2770
0.1774
3.1872
130
2635
2765
14
100.0000
0.2224
0.1686
3.5078
134
2634
2768
14
100.0000
0.2082
0.1550
4.0149
121
2633
2754
14
100.0000
0.2160
0.1371
5.0569
143
2636
2779
14
100.0000
0.2043
0.1735
40.4114
110
2665
2775
14
100.0000
2.0990
50.0
3WF5
20923
20923
0
-3.0
0.08
1
30.0
12.1
98.9
2.0990
2.14
2.0
994
1
12.4
98.2
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
data reduction
HKL-2000
data scaling
HKL-2000
Ribosomal protein S6 kinase beta-1 (E.C.2.7.11.1)
Crystal structure of S6K1 kinase domain in complex with a pyrazolopyrimidine derivative 4-[4-(1H-benzimidazol-2-yl)piperidin-1-yl]-1H-pyrazolo[3,4-d]pyrimidine
1
N
N
2
N
N
3
N
N
4
N
N
A
ARG
87
A
ARG
17
HELX_P
A
GLU
89
A
GLU
19
5
1
3
A
LYS
141
A
LYS
71
HELX_P
A
VAL
150
A
VAL
80
1
2
10
A
GLU
179
A
GLU
109
HELX_P
A
GLY
188
A
GLY
118
1
3
10
A
MET
191
A
MET
121
HELX_P
A
LYS
212
A
LYS
142
1
4
22
A
LYS
220
A
LYS
150
HELX_P
A
GLU
222
A
GLU
152
5
5
3
A
ALA
261
A
ALA
191
HELX_P
A
ARG
267
A
ARG
197
1
6
7
A
ARG
272
A
ARG
202
HELX_P
A
GLY
289
A
GLY
219
1
7
18
A
ASN
297
A
ASN
227
HELX_P
A
CYS
308
A
CYS
238
1
8
12
A
THR
317
A
THR
247
HELX_P
A
LEU
328
A
LEU
258
1
9
12
A
ASN
331
A
ASN
261
HELX_P
A
ARG
335
A
ARG
265
5
10
5
A
GLY
341
A
GLY
271
HELX_P
A
ALA
348
A
ALA
278
1
11
8
A
HIS
349
A
HIS
279
HELX_P
A
ARG
353
A
ARG
283
5
12
5
A
ASN
356
A
ASN
286
HELX_P
A
ALA
362
A
ALA
292
1
13
7
A
LYS
370
A
LYS
300
HELX_P
A
GLN
374
A
GLN
304
5
14
5
covale
1.326
A
HIS
251
A
C
HIS
181
1_555
A
TPO
252
A
N
TPO
182
1_555
covale
1.324
A
TPO
252
A
C
TPO
182
1_555
A
PHE
253
A
N
PHE
183
1_555
metalc
2.047
A
HIS
251
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.280
A
CYS
254
A
SG
CYS
184
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.371
A
HIS
245
A
ND1
HIS
175
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.493
A
CYS
240
A
SG
CYS
170
1_555
A
ZN
401
B
ZN
ZN
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
SERINE/THREONINE PROTEIN KINASE DOMAIN, TRANSFERASE, PHOSPHORYLATION, ATP-BINDING, ZINC-BINDING, TRANSFERASE-TRANSFERASE INHIBITOR complex
KS6B1_HUMAN
UNP
1
78
P23443
SVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVD
LIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDF
GLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLT
QEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDD
ST
78
399
3WF5
78
399
P23443
A
1
8
329
1
EXPRESSION TAG
GLY
71
3WF5
A
P23443
UNP
1
1
EXPRESSION TAG
SER
72
3WF5
A
P23443
UNP
2
1
EXPRESSION TAG
PHE
73
3WF5
A
P23443
UNP
3
1
EXPRESSION TAG
THR
74
3WF5
A
P23443
UNP
4
1
EXPRESSION TAG
SER
75
3WF5
A
P23443
UNP
5
1
EXPRESSION TAG
SER
76
3WF5
A
P23443
UNP
6
1
EXPRESSION TAG
GLY
77
3WF5
A
P23443
UNP
7
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
91
A
PHE
21
A
GLY
100
A
GLY
30
A
GLY
103
A
GLY
33
A
LYS
110
A
LYS
40
A
ILE
119
A
ILE
49
A
LYS
126
A
LYS
56
A
LYS
167
A
LYS
97
A
GLU
173
A
GLU
103
A
LEU
158
A
LEU
88
A
THR
164
A
THR
94
A
ILE
224
A
ILE
154
A
LEU
226
A
LEU
156
A
VAL
232
A
VAL
162
A
LEU
234
A
LEU
164
BINDING SITE FOR RESIDUE ZN A 401
Software
4
BINDING SITE FOR RESIDUE FZ8 A 402
Software
14
A
CYS
240
A
CYS
170
4
1_555
A
HIS
245
A
HIS
175
4
1_555
A
HIS
251
A
HIS
181
4
1_555
A
CYS
254
A
CYS
184
4
1_555
A
GLY
98
A
GLY
28
14
1_555
A
LYS
99
A
LYS
29
14
1_555
A
GLY
100
A
GLY
30
14
1_555
A
GLY
103
A
GLY
33
14
1_555
A
VAL
105
A
VAL
35
14
1_555
A
ALA
121
A
ALA
51
14
1_555
A
VAL
156
A
VAL
86
14
1_555
A
GLU
173
A
GLU
103
14
1_555
A
LEU
175
A
LEU
105
14
1_555
A
MET
225
A
MET
155
14
1_555
A
LYS
241
A
LYS
171
14
1_555
A
HOH
516
D
HOH
14
1_555
A
HOH
533
D
HOH
14
1_555
A
HOH
606
D
HOH
14
1_555
92
P 41 21 2