0.018695
0.010793
0.000000
0.000000
0.021587
0.000000
0.000000
0.000000
0.012020
0.00000
0.00000
0.00000
Lystad, A.
Ichimura, Y.
Takagi, K.
Yang, Y.
Pankiv, S.
Mizushima, T.
Komatsu, M.
Simonsen, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
53.491
53.491
83.193
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
To be Published
0353
GABARAP-LIR peptide complex
2014
10.2210/pdb3wim/pdb
pdb_00003wim
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-10-12
RAYONIX MX225HE
SINGLE WAVELENGTH
M
x-ray
1
0.9
1.0
BL44XU
SPring-8
0.9
SYNCHROTRON
SPRING-8 BEAMLINE BL44XU
13942.047
Gamma-aminobutyric acid receptor-associated protein
1
man
polymer
1620.693
WD repeat and FYVE domain-containing protein 3
UNP residues 3341-3354
1
syn
polymer
18.015
water
12
nat
water
GABA(A) receptor-associated protein, MM46
Autophagy-linked FYVE protein, Alfy
no
no
MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFV
NNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFV
NNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
A
polypeptide(L)
no
no
DEKDGFIFVNYSEG
DEKDGFIFVNYSEG
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
GABARAP, FLC3B, HT004
9606
Homo sapiens
562
Escherichia coli
1
2.21
44.29
VAPOR DIFFUSION, HANGING DROP
5.4
2M ammonium sulfate, 0.1M sodium citrate, 0.2M potassium sodium tartrate, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2014-03-12
1
1
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
PDBJ
Y
PDBJ
2013-09-19
REL
REL
HOH
water
Synthetic construct
9606
human
Homo sapiens
sample
1GNU
PDB ENTRY 1GNU
PDB
experimental model
HOH
1
3
HOH
HOH
201
A
HOH
2
3
HOH
HOH
202
A
HOH
3
3
HOH
HOH
203
A
HOH
5
3
HOH
HOH
204
A
HOH
6
3
HOH
HOH
205
A
HOH
8
3
HOH
HOH
206
A
HOH
9
3
HOH
HOH
207
A
HOH
13
3
HOH
HOH
208
A
HOH
16
3
HOH
HOH
209
A
HOH
17
3
HOH
HOH
210
A
HOH
7
3
HOH
HOH
3401
B
HOH
12
3
HOH
HOH
3402
B
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
PHE
3
n
3
PHE
3
A
VAL
4
n
4
VAL
4
A
TYR
5
n
5
TYR
5
A
LYS
6
n
6
LYS
6
A
GLU
7
n
7
GLU
7
A
GLU
8
n
8
GLU
8
A
HIS
9
n
9
HIS
9
A
PRO
10
n
10
PRO
10
A
PHE
11
n
11
PHE
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
ARG
15
n
15
ARG
15
A
SER
16
n
16
SER
16
A
GLU
17
n
17
GLU
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
LYS
20
n
20
LYS
20
A
ILE
21
n
21
ILE
21
A
ARG
22
n
22
ARG
22
A
LYS
23
n
23
LYS
23
A
LYS
24
n
24
LYS
24
A
TYR
25
n
25
TYR
25
A
PRO
26
n
26
PRO
26
A
ASP
27
n
27
ASP
27
A
ARG
28
n
28
ARG
28
A
VAL
29
n
29
VAL
29
A
PRO
30
n
30
PRO
30
A
VAL
31
n
31
VAL
31
A
ILE
32
n
32
ILE
32
A
VAL
33
n
33
VAL
33
A
GLU
34
n
34
GLU
34
A
LYS
35
n
35
LYS
35
A
ALA
36
n
36
ALA
36
A
PRO
37
n
37
PRO
37
A
LYS
38
n
38
LYS
38
A
ALA
39
n
39
ALA
39
A
ARG
40
n
40
ARG
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
ASP
43
n
43
ASP
43
A
LEU
44
n
44
LEU
44
A
ASP
45
n
45
ASP
45
A
LYS
46
n
46
LYS
46
A
LYS
47
n
47
LYS
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
LEU
50
n
50
LEU
50
A
VAL
51
n
51
VAL
51
A
PRO
52
n
52
PRO
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
LEU
55
n
55
LEU
55
A
THR
56
n
56
THR
56
A
VAL
57
n
57
VAL
57
A
GLY
58
n
58
GLY
58
A
GLN
59
n
59
GLN
59
A
PHE
60
n
60
PHE
60
A
TYR
61
n
61
TYR
61
A
PHE
62
n
62
PHE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
ARG
65
n
65
ARG
65
A
LYS
66
n
66
LYS
66
A
ARG
67
n
67
ARG
67
A
ILE
68
n
68
ILE
68
A
HIS
69
n
69
HIS
69
A
LEU
70
n
70
LEU
70
A
ARG
71
n
71
ARG
71
A
ALA
72
n
72
ALA
72
A
GLU
73
n
73
GLU
73
A
ASP
74
n
74
ASP
74
A
ALA
75
n
75
ALA
75
A
LEU
76
n
76
LEU
76
A
PHE
77
n
77
PHE
77
A
PHE
78
n
78
PHE
78
A
PHE
79
n
79
PHE
79
A
VAL
80
n
80
VAL
80
A
ASN
81
n
81
ASN
81
A
ASN
82
n
82
ASN
82
A
VAL
83
n
83
VAL
83
A
ILE
84
n
84
ILE
84
A
PRO
85
n
85
PRO
85
A
PRO
86
n
86
PRO
86
A
THR
87
n
87
THR
87
A
SER
88
n
88
SER
88
A
ALA
89
n
89
ALA
89
A
THR
90
n
90
THR
90
A
MET
91
n
91
MET
91
A
GLY
92
n
92
GLY
92
A
GLN
93
n
93
GLN
93
A
LEU
94
n
94
LEU
94
A
TYR
95
n
95
TYR
95
A
GLN
96
n
96
GLN
96
A
GLU
97
n
97
GLU
97
A
HIS
98
n
98
HIS
98
A
HIS
99
n
99
HIS
99
A
GLU
100
n
100
GLU
100
A
GLU
101
n
101
GLU
101
A
ASP
102
n
102
ASP
102
A
PHE
103
n
103
PHE
103
A
PHE
104
n
104
PHE
104
A
LEU
105
n
105
LEU
105
A
TYR
106
n
106
TYR
106
A
ILE
107
n
107
ILE
107
A
ALA
108
n
108
ALA
108
A
TYR
109
n
109
TYR
109
A
SER
110
n
110
SER
110
A
ASP
111
n
111
ASP
111
A
GLU
112
n
112
GLU
112
A
SER
113
n
113
SER
113
A
VAL
114
n
114
VAL
114
A
TYR
115
n
115
TYR
115
A
ALA
116
n
116
GLY
116
A
LEU
117
n
117
LEU
117
A
ASP
3341
n
1
ASP
3341
B
GLU
3342
n
2
GLU
3342
B
LYS
3343
n
3
LYS
3343
B
ASP
3344
n
4
ASP
3344
B
GLY
3345
n
5
GLY
3345
B
PHE
3346
n
6
PHE
3346
B
ILE
3347
n
7
ILE
3347
B
PHE
3348
n
8
PHE
3348
B
VAL
3349
n
9
VAL
3349
B
ASN
3350
n
10
ASN
3350
B
TYR
3351
n
11
TYR
3351
B
SER
3352
n
12
SER
3352
B
n
13
3353
B
n
14
3354
B
author_and_software_defined_assembly
PISA
2
dimeric
1360
-6
7150
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
79
A
N
PHE
79
A
O
ALA
108
A
O
ALA
108
A
O
ILE
107
A
O
ILE
107
A
N
ILE
32
A
N
ILE
32
A
N
VAL
31
A
N
VAL
31
A
O
TYR
49
A
O
TYR
49
A
N
LEU
50
A
N
LEU
50
B
O
ILE
3347
B
O
ILE
7
B
O
PHE
3346
B
O
PHE
6
B
N
LYS
3343
B
N
LYS
3
1
A
HOH
202
C
HOH
1
B
GLU
3353
B
GLU
13
1
Y
1
B
GLY
3354
B
GLY
14
1
Y
1
B
B
TYR
SER
3351
3352
144.82
1
A
ASP
45
-43.27
-70.33
1
A
ASN
82
74.36
-1.41
19.429
0.26
0.13
0.00
0.26
0.00
-0.38
0.918
0.851
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.29605
0.21013
0.21405
2.6
46.32
210
4353
4.6
99.80
12.908
0.283
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.392
0.80
0.80
1.40
PDB ENTRY 1GNU
MAXIMUM LIKELIHOOD
MASK
2.6
46.32
12
1099
0
0
1087
0.005
0.022
1117
0.961
1.964
1502
7.992
5.000
127
30.281
23.220
59
22.738
15.000
201
25.588
15.000
8
0.093
0.200
154
0.005
0.021
857
1.081
1.500
645
2.062
2.000
1046
2.820
3.000
472
4.622
4.500
456
0.298
0.234
2.661
16
317
20
99.40
2.6
50.0
3WIM
4595
0.135
1
8.9
7.0
100.0
0.436
2.60
2.64
6.80
219
1
7.1
100.0
phasing
MOLREP
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
GABARAP-LIR peptide complex
1
N
N
2
N
N
3
N
N
3
N
N
A
PHE
3
A
PHE
3
HELX_P
A
HIS
9
A
HIS
9
1
1
7
A
PRO
10
A
PRO
10
HELX_P
A
TYR
25
A
TYR
25
1
2
16
A
THR
56
A
THR
56
HELX_P
A
ILE
68
A
ILE
68
1
3
13
A
THR
90
A
THR
90
HELX_P
A
HIS
99
A
HIS
99
1
4
10
TRANSPORT PROTEIN
Ubiquitin like fold, Alpha helical region, Autophagy, Maturation of autophagosome, Atg7, Atg3, ALFY, GABA(A) receptor, Phosphatidylethanolamine, Autophagosome, Isolation membrane, TRANSPORT PROTEIN
A
TYR
115
A
TYR
115
1
A
GLY
116
A
GLY
116
-5.51
GBRAP_HUMAN
UNP
1
1
O95166
MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFV
NNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
WDFY3_HUMAN
UNP
2
3341
Q8IZQ1
DEKDGFIFVNYSEG
1
117
3WIM
1
117
O95166
A
1
1
117
3341
3354
3WIM
3341
3354
Q8IZQ1
B
2
1
14
6
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
A
PHE
77
A
PHE
77
A
PHE
79
A
PHE
79
A
LEU
105
A
LEU
105
A
SER
110
A
SER
110
A
ARG
28
A
ARG
28
A
LYS
35
A
LYS
35
A
LYS
48
A
LYS
48
A
PRO
52
A
PRO
52
B
PHE
3346
B
PHE
6
B
PHE
3348
B
PHE
8
B
GLU
3342
B
GLU
2
B
LYS
3343
B
LYS
3
154
P 32 2 1