0.012658 0.000000 0.000000 0.000000 0.012658 0.000000 0.000000 0.000000 0.026316 0.00000 0.00000 0.00000 Sugahara, M. Nango, E. Suzuki, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 79.000 79.000 38.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal structure of hen egg-white lysozyme 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 CCD 2013-09-30 MPCCD octal Si 111 SINGLE WAVELENGTH M x-ray 1 1.23 1.0 BL3 SACLA 1.23 FREE ELECTRON LASER SACLA BEAMLINE BL3 14331.160 Lysozyme C 3.2.1.17 1 nat polymer 22.990 SODIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 32 nat water 1,4-beta-N-acetylmuramidase C, Allergen Gal d IV no no KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Chicken sample 9031 Gallus gallus 3226 2.07 40.54 batch 3.0 sodium chloride, PEG 6000, pH 3.0, batch, temperature 293K 293 diffrn_source software repository Initial release Data collection Refinement description 1 0 2015-05-27 1 1 2018-01-24 _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_synchrotron_site _software.version PDBJ Y PDBJ 2014-04-28 REL REL NA SODIUM ION CL CHLORIDE ION HOH water NA 1001 2 NA NA 1001 A CL 2001 3 CL CL 1002 A HOH 1 4 HOH HOH 1101 A HOH 2 4 HOH HOH 1102 A HOH 3 4 HOH HOH 1103 A HOH 4 4 HOH HOH 1104 A HOH 5 4 HOH HOH 1105 A HOH 6 4 HOH HOH 1106 A HOH 7 4 HOH HOH 1107 A HOH 8 4 HOH HOH 1108 A HOH 9 4 HOH HOH 1109 A HOH 10 4 HOH HOH 1110 A HOH 11 4 HOH HOH 1111 A HOH 12 4 HOH HOH 1112 A HOH 13 4 HOH HOH 1113 A HOH 14 4 HOH HOH 1114 A HOH 15 4 HOH HOH 1115 A HOH 16 4 HOH HOH 1116 A HOH 17 4 HOH HOH 1117 A HOH 18 4 HOH HOH 1118 A HOH 19 4 HOH HOH 1119 A HOH 20 4 HOH HOH 1120 A HOH 21 4 HOH HOH 1121 A HOH 22 4 HOH HOH 1122 A HOH 23 4 HOH HOH 1123 A HOH 24 4 HOH HOH 1124 A HOH 25 4 HOH HOH 1125 A HOH 26 4 HOH HOH 1126 A HOH 27 4 HOH HOH 1127 A HOH 28 4 HOH HOH 1128 A HOH 29 4 HOH HOH 1129 A HOH 30 4 HOH HOH 1130 A HOH 31 4 HOH HOH 1131 A HOH 32 4 HOH HOH 1132 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A HIS 15 n 15 HIS 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A PHE 34 n 34 PHE 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TRP 62 n 62 TRP 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASN 65 n 65 ASN 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A ARG 73 n 73 ARG 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ASN 77 n 77 ASN 77 A ILE 78 n 78 ILE 78 A PRO 79 n 79 PRO 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A SER 85 n 85 SER 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ALA 90 n 90 ALA 90 A SER 91 n 91 SER 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A ASP 101 n 101 ASP 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A MET 105 n 105 MET 105 A ASN 106 n 106 ASN 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A ARG 114 n 114 ARG 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A VAL 120 n 120 VAL 120 A GLN 121 n 121 GLN 121 A ALA 122 n 122 ALA 122 A TRP 123 n 123 TRP 123 A ILE 124 n 124 ILE 124 A ARG 125 n 125 ARG 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A author_and_software_defined_assembly PISA 1 monomeric A CYS 64 A O CYS 64 1_555 A NA 1001 B NA NA 1_555 A SER 72 A OG SER 72 1_555 159.2 A CYS 64 A O CYS 64 1_555 A NA 1001 B NA NA 1_555 A HOH 1127 D O HOH 1_555 84.5 A SER 72 A OG SER 72 1_555 A NA 1001 B NA NA 1_555 A HOH 1127 D O HOH 1_555 78.9 A CYS 64 A O CYS 64 1_555 A NA 1001 B NA NA 1_555 A ARG 73 A O ARG 73 1_555 99.3 A SER 72 A OG SER 72 1_555 A NA 1001 B NA NA 1_555 A ARG 73 A O ARG 73 1_555 97.8 A HOH 1127 D O HOH 1_555 A NA 1001 B NA NA 1_555 A ARG 73 A O ARG 73 1_555 175.5 A CYS 64 A O CYS 64 1_555 A NA 1001 B NA NA 1_555 A SER 60 A O SER 60 1_555 88.4 A SER 72 A OG SER 72 1_555 A NA 1001 B NA NA 1_555 A SER 60 A O SER 60 1_555 79.4 A HOH 1127 D O HOH 1_555 A NA 1001 B NA NA 1_555 A SER 60 A O SER 60 1_555 90.9 A ARG 73 A O ARG 73 1_555 A NA 1001 B NA NA 1_555 A SER 60 A O SER 60 1_555 91.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 44 A N ASN 44 A O ASP 52 A O ASP 52 A N TYR 53 A N TYR 53 A O ILE 58 A O ILE 58 42.201 0.944 0.907 0.22981 0.19433 0.19615 2.40 19.16 233 4794 4794 4.6 99.92 RANDOM 1 THROUGHOUT 0 FOURIER SYNTHESIS 0.596 0.260 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.40 19.16 32 1035 2 0 1001 0.015 0.021 1025 1.546 1.903 1389 6.355 5.000 128 32.043 23.000 50 16.823 15.000 166 27.660 15.000 11 0.120 0.200 144 0.005 0.020 794 0.752 1.500 635 1.506 2.000 1008 2.706 3.000 390 4.525 4.500 381 0.2360 0.0000 0.2460 2.4610 20 334 354 20 99.7200 2.4 30 3WUN 5038 5038 0 0 1 99.8 2.40 2.49 1 99.8 data collection CrystFEL refinement REFMAC 5.5.0109 data reduction CrystFEL data scaling XDS phasing REFMAC Lysozyme C (E.C.3.2.1.17) Crystal structure of hen egg-white lysozyme 1 N N 2 N N 3 N N 4 N N A GLY 4 A GLY 4 HELX_P A HIS 15 A HIS 15 1 1 12 A ASN 19 A ASN 19 HELX_P A TYR 23 A TYR 23 5 2 5 A SER 24 A SER 24 HELX_P A ASN 37 A ASN 37 1 3 14 A PRO 79 A PRO 79 HELX_P A SER 85 A SER 85 5 4 7 A ILE 88 A ILE 88 HELX_P A SER 100 A SER 100 1 5 13 A ASN 103 A ASN 103 HELX_P A ALA 107 A ALA 107 5 6 5 A TRP 108 A TRP 108 HELX_P A CYS 115 A CYS 115 1 7 8 A ASP 119 A ASP 119 HELX_P A ILE 124 A ILE 124 5 8 6 disulf 1.980 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.031 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.022 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.040 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 metalc 2.372 A CYS 64 A O CYS 64 1_555 A NA 1001 B NA NA 1_555 metalc 2.435 A SER 72 A OG SER 72 1_555 A NA 1001 B NA NA 1_555 metalc 2.449 A NA 1001 B NA NA 1_555 A HOH 1127 D O HOH 1_555 metalc 2.583 A ARG 73 A O ARG 73 1_555 A NA 1001 B NA NA 1_555 metalc 2.640 A SER 60 A O SER 60 1_555 A NA 1001 B NA NA 1_555 HYDROLASE serial femtosecond crystallography, HYDROLASE LYSC_CHICK UNP 1 19 P00698 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 19 147 3WUN 1 129 P00698 A 1 1 129 3 anti-parallel anti-parallel A THR 43 A THR 43 A ARG 45 A ARG 45 A THR 51 A THR 51 A TYR 53 A TYR 53 A ILE 58 A ILE 58 A ASN 59 A ASN 59 BINDING SITE FOR RESIDUE NA A 1001 Software 5 BINDING SITE FOR RESIDUE CL A 1002 Software 2 A SER 60 A SER 60 5 1_555 A CYS 64 A CYS 64 5 1_555 A SER 72 A SER 72 5 1_555 A ARG 73 A ARG 73 5 1_555 A HOH 1127 D HOH 5 1_555 A TYR 23 A TYR 23 2 1_555 A ASN 113 A ASN 113 2 3_544 96 P 43 21 2