0.018102
0.000000
0.000000
-0.000000
0.011701
0.000000
0.000000
-0.000000
0.011612
0.00000
0.00000
0.00000
Kawato, T.
Mizohata, E.
Shimizu, Y.
Meshizuka, T.
Yamamoto, T.
Takasu, N.
Matsuoka, M.
Matsumura, H.
Tsumoto, K.
Kodama, T.
Kanai, M.
Doi, H.
Inoue, T.
Sugiyama, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
55.241
85.461
86.115
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C12 H26 O7
282.331
HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C16 H27 N3 O5 S
373.468
6-({5-[(3aS,4S,5S,6aR)-5-oxido-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
R
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
N
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
O
N
418
S
S
N
419
N
C
N
420
R
C
N
421
N
N
N
422
N
C
N
423
N
O
N
424
N
N
N
425
S
C
N
426
S
C
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
N
N
434
N
C
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
O
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
doub
Y
274
N
sing
Y
275
N
sing
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
JP
J.Biochem.
0021-924X
157
467
475
10.1093/jb/mvv004
25645976
Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
2015
10.2210/pdb3wzo/pdb
pdb_00003wzo
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-12-18
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.98000
1.0
BL-17A
Photon Factory
0.98000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-17A
13227.240
Streptavidin
UNP residues 37-163
Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N
4
man
polymer
373.468
6-({5-[(3aS,4S,5S,6aR)-5-oxido-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid
4
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
112.411
CADMIUM ION
9
syn
non-polymer
282.331
HEXAETHYLENE GLYCOL
2
syn
non-polymer
18.015
water
233
nat
water
no
no
GPAEAGITGTWSDQLGDTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNSKNAHSAT
TWSGQYVGGADAKINTQWLLTSGTTNANAWKSTLVGHDTFTKVKPSAAS
GPAEAGITGTWSDQLGDTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNSKNAHSAT
TWSGQYVGGADAKINTQWLLTSGTTNANAWKSTLVGHDTFTKVKPSAAS
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1895
Streptomyces avidinii
562
Escherichia coli
BL21Star(DE3)
plasmid
pCold TF
1
1.92
35.97
VAPOR DIFFUSION, SITTING DROP
4.6
0.1 M cadmium chloride hydrate, 0.1 M sodium acetate trihydrate, 30%(v/v) PEG400, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
software
citation
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2015-02-18
1
1
2017-11-22
1
2
2022-08-24
1
3
2023-11-08
_software.name
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The mutant V21 complexed with biotin
The mutant V21 complexed with iminobiotin long tail (IMNtail)
The mutant V21 complexed with iminobiotin long tail (IMNtail) 1.7 A resolution
PDBJ
Y
PDBJ
2014-10-01
REL
REL
ZOE
6-({5-[(3aS,4S,5S,6aR)-5-oxido-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid
GOL
GLYCEROL
CD
CADMIUM ION
P6G
HEXAETHYLENE GLYCOL
HOH
water
3WYQ
PDB
experimental model
ZOE
1
2
ZOE
ZOE
201
A
GOL
1
3
GOL
GOL
202
A
CD
3
4
CD
CD
203
A
CD
6
4
CD
CD
204
A
CD
9
4
CD
CD
205
A
P6G
1
5
P6G
P6G
206
A
ZOE
2
2
ZOE
ZOE
201
B
CD
4
4
CD
CD
202
B
ZOE
3
2
ZOE
ZOE
201
C
GOL
3
3
GOL
GOL
202
C
CD
1
4
CD
CD
203
C
ZOE
4
2
ZOE
ZOE
201
D
GOL
2
3
GOL
GOL
202
D
CD
2
4
CD
CD
203
D
CD
5
4
CD
CD
204
D
CD
7
4
CD
CD
205
D
CD
8
4
CD
CD
206
D
P6G
2
5
P6G
P6G
207
D
HOH
1
6
HOH
HOH
301
A
HOH
2
6
HOH
HOH
302
A
HOH
3
6
HOH
HOH
303
A
HOH
8
6
HOH
HOH
304
A
HOH
12
6
HOH
HOH
305
A
HOH
17
6
HOH
HOH
306
A
HOH
18
6
HOH
HOH
307
A
HOH
25
6
HOH
HOH
308
A
HOH
30
6
HOH
HOH
309
A
HOH
34
6
HOH
HOH
310
A
HOH
35
6
HOH
HOH
311
A
HOH
39
6
HOH
HOH
312
A
HOH
49
6
HOH
HOH
313
A
HOH
56
6
HOH
HOH
314
A
HOH
60
6
HOH
HOH
315
A
HOH
65
6
HOH
HOH
316
A
HOH
69
6
HOH
HOH
317
A
HOH
73
6
HOH
HOH
318
A
HOH
80
6
HOH
HOH
319
A
HOH
81
6
HOH
HOH
320
A
HOH
84
6
HOH
HOH
321
A
HOH
85
6
HOH
HOH
322
A
HOH
87
6
HOH
HOH
323
A
HOH
88
6
HOH
HOH
324
A
HOH
89
6
HOH
HOH
325
A
HOH
91
6
HOH
HOH
326
A
HOH
92
6
HOH
HOH
327
A
HOH
93
6
HOH
HOH
328
A
HOH
101
6
HOH
HOH
329
A
HOH
102
6
HOH
HOH
330
A
HOH
103
6
HOH
HOH
331
A
HOH
105
6
HOH
HOH
332
A
HOH
108
6
HOH
HOH
333
A
HOH
109
6
HOH
HOH
334
A
HOH
115
6
HOH
HOH
335
A
HOH
119
6
HOH
HOH
336
A
HOH
121
6
HOH
HOH
337
A
HOH
122
6
HOH
HOH
338
A
HOH
123
6
HOH
HOH
339
A
HOH
124
6
HOH
HOH
340
A
HOH
125
6
HOH
HOH
341
A
HOH
126
6
HOH
HOH
342
A
HOH
127
6
HOH
HOH
343
A
HOH
128
6
HOH
HOH
344
A
HOH
129
6
HOH
HOH
345
A
HOH
130
6
HOH
HOH
346
A
HOH
142
6
HOH
HOH
347
A
HOH
147
6
HOH
HOH
348
A
HOH
151
6
HOH
HOH
349
A
HOH
156
6
HOH
HOH
350
A
HOH
157
6
HOH
HOH
351
A
HOH
158
6
HOH
HOH
352
A
HOH
159
6
HOH
HOH
353
A
HOH
167
6
HOH
HOH
354
A
HOH
176
6
HOH
HOH
355
A
HOH
177
6
HOH
HOH
356
A
HOH
182
6
HOH
HOH
357
A
HOH
183
6
HOH
HOH
358
A
HOH
187
6
HOH
HOH
359
A
HOH
190
6
HOH
HOH
360
A
HOH
192
6
HOH
HOH
361
A
HOH
199
6
HOH
HOH
362
A
HOH
207
6
HOH
HOH
363
A
HOH
208
6
HOH
HOH
364
A
HOH
211
6
HOH
HOH
365
A
HOH
212
6
HOH
HOH
366
A
HOH
219
6
HOH
HOH
367
A
HOH
220
6
HOH
HOH
368
A
HOH
222
6
HOH
HOH
369
A
HOH
223
6
HOH
HOH
370
A
HOH
4
6
HOH
HOH
301
B
HOH
5
6
HOH
HOH
302
B
HOH
6
6
HOH
HOH
303
B
HOH
7
6
HOH
HOH
304
B
HOH
9
6
HOH
HOH
305
B
HOH
13
6
HOH
HOH
306
B
HOH
16
6
HOH
HOH
307
B
HOH
23
6
HOH
HOH
308
B
HOH
26
6
HOH
HOH
309
B
HOH
29
6
HOH
HOH
310
B
HOH
31
6
HOH
HOH
311
B
HOH
42
6
HOH
HOH
312
B
HOH
50
6
HOH
HOH
313
B
HOH
55
6
HOH
HOH
314
B
HOH
62
6
HOH
HOH
315
B
HOH
63
6
HOH
HOH
316
B
HOH
66
6
HOH
HOH
317
B
HOH
71
6
HOH
HOH
318
B
HOH
72
6
HOH
HOH
319
B
HOH
77
6
HOH
HOH
320
B
HOH
82
6
HOH
HOH
321
B
HOH
83
6
HOH
HOH
322
B
HOH
90
6
HOH
HOH
323
B
HOH
98
6
HOH
HOH
324
B
HOH
99
6
HOH
HOH
325
B
HOH
100
6
HOH
HOH
326
B
HOH
104
6
HOH
HOH
327
B
HOH
113
6
HOH
HOH
328
B
HOH
117
6
HOH
HOH
329
B
HOH
120
6
HOH
HOH
330
B
HOH
131
6
HOH
HOH
331
B
HOH
132
6
HOH
HOH
332
B
HOH
146
6
HOH
HOH
333
B
HOH
149
6
HOH
HOH
334
B
HOH
150
6
HOH
HOH
335
B
HOH
163
6
HOH
HOH
336
B
HOH
171
6
HOH
HOH
337
B
HOH
191
6
HOH
HOH
338
B
HOH
193
6
HOH
HOH
339
B
HOH
194
6
HOH
HOH
340
B
HOH
195
6
HOH
HOH
341
B
HOH
196
6
HOH
HOH
342
B
HOH
197
6
HOH
HOH
343
B
HOH
209
6
HOH
HOH
344
B
HOH
210
6
HOH
HOH
345
B
HOH
213
6
HOH
HOH
346
B
HOH
214
6
HOH
HOH
347
B
HOH
215
6
HOH
HOH
348
B
HOH
221
6
HOH
HOH
349
B
HOH
224
6
HOH
HOH
350
B
HOH
225
6
HOH
HOH
351
B
HOH
226
6
HOH
HOH
352
B
HOH
227
6
HOH
HOH
353
B
HOH
228
6
HOH
HOH
354
B
HOH
11
6
HOH
HOH
301
C
HOH
19
6
HOH
HOH
302
C
HOH
20
6
HOH
HOH
303
C
HOH
21
6
HOH
HOH
304
C
HOH
22
6
HOH
HOH
305
C
HOH
27
6
HOH
HOH
306
C
HOH
37
6
HOH
HOH
307
C
HOH
43
6
HOH
HOH
308
C
HOH
44
6
HOH
HOH
309
C
HOH
45
6
HOH
HOH
310
C
HOH
46
6
HOH
HOH
311
C
HOH
48
6
HOH
HOH
312
C
HOH
51
6
HOH
HOH
313
C
HOH
53
6
HOH
HOH
314
C
HOH
54
6
HOH
HOH
315
C
HOH
57
6
HOH
HOH
316
C
HOH
58
6
HOH
HOH
317
C
HOH
61
6
HOH
HOH
318
C
HOH
70
6
HOH
HOH
319
C
HOH
76
6
HOH
HOH
320
C
HOH
78
6
HOH
HOH
321
C
HOH
79
6
HOH
HOH
322
C
HOH
86
6
HOH
HOH
323
C
HOH
94
6
HOH
HOH
324
C
HOH
95
6
HOH
HOH
325
C
HOH
96
6
HOH
HOH
326
C
HOH
97
6
HOH
HOH
327
C
HOH
114
6
HOH
HOH
328
C
HOH
118
6
HOH
HOH
329
C
HOH
135
6
HOH
HOH
330
C
HOH
140
6
HOH
HOH
331
C
HOH
148
6
HOH
HOH
332
C
HOH
152
6
HOH
HOH
333
C
HOH
153
6
HOH
HOH
334
C
HOH
154
6
HOH
HOH
335
C
HOH
155
6
HOH
HOH
336
C
HOH
161
6
HOH
HOH
337
C
HOH
162
6
HOH
HOH
338
C
HOH
164
6
HOH
HOH
339
C
HOH
168
6
HOH
HOH
340
C
HOH
170
6
HOH
HOH
341
C
HOH
172
6
HOH
HOH
342
C
HOH
173
6
HOH
HOH
343
C
HOH
174
6
HOH
HOH
344
C
HOH
175
6
HOH
HOH
345
C
HOH
178
6
HOH
HOH
346
C
HOH
179
6
HOH
HOH
347
C
HOH
180
6
HOH
HOH
348
C
HOH
184
6
HOH
HOH
349
C
HOH
198
6
HOH
HOH
350
C
HOH
217
6
HOH
HOH
351
C
HOH
229
6
HOH
HOH
352
C
HOH
230
6
HOH
HOH
353
C
HOH
10
6
HOH
HOH
301
D
HOH
14
6
HOH
HOH
302
D
HOH
15
6
HOH
HOH
303
D
HOH
24
6
HOH
HOH
304
D
HOH
28
6
HOH
HOH
305
D
HOH
32
6
HOH
HOH
306
D
HOH
33
6
HOH
HOH
307
D
HOH
36
6
HOH
HOH
308
D
HOH
38
6
HOH
HOH
309
D
HOH
40
6
HOH
HOH
310
D
HOH
41
6
HOH
HOH
311
D
HOH
47
6
HOH
HOH
312
D
HOH
52
6
HOH
HOH
313
D
HOH
59
6
HOH
HOH
314
D
HOH
64
6
HOH
HOH
315
D
HOH
67
6
HOH
HOH
316
D
HOH
68
6
HOH
HOH
317
D
HOH
74
6
HOH
HOH
318
D
HOH
75
6
HOH
HOH
319
D
HOH
106
6
HOH
HOH
320
D
HOH
107
6
HOH
HOH
321
D
HOH
110
6
HOH
HOH
322
D
HOH
111
6
HOH
HOH
323
D
HOH
112
6
HOH
HOH
324
D
HOH
116
6
HOH
HOH
325
D
HOH
133
6
HOH
HOH
326
D
HOH
134
6
HOH
HOH
327
D
HOH
136
6
HOH
HOH
328
D
HOH
137
6
HOH
HOH
329
D
HOH
138
6
HOH
HOH
330
D
HOH
139
6
HOH
HOH
331
D
HOH
141
6
HOH
HOH
332
D
HOH
143
6
HOH
HOH
333
D
HOH
144
6
HOH
HOH
334
D
HOH
145
6
HOH
HOH
335
D
HOH
160
6
HOH
HOH
336
D
HOH
165
6
HOH
HOH
337
D
HOH
166
6
HOH
HOH
338
D
HOH
169
6
HOH
HOH
339
D
HOH
181
6
HOH
HOH
340
D
HOH
185
6
HOH
HOH
341
D
HOH
186
6
HOH
HOH
342
D
HOH
188
6
HOH
HOH
343
D
HOH
189
6
HOH
HOH
344
D
HOH
200
6
HOH
HOH
345
D
HOH
201
6
HOH
HOH
346
D
HOH
202
6
HOH
HOH
347
D
HOH
203
6
HOH
HOH
348
D
HOH
204
6
HOH
HOH
349
D
HOH
205
6
HOH
HOH
350
D
HOH
206
6
HOH
HOH
351
D
HOH
216
6
HOH
HOH
352
D
HOH
218
6
HOH
HOH
353
D
HOH
231
6
HOH
HOH
354
D
HOH
232
6
HOH
HOH
355
D
HOH
233
6
HOH
HOH
356
D
GLY
11
n
1
GLY
11
A
PRO
12
n
2
PRO
12
A
ALA
13
n
3
ALA
13
A
GLU
14
n
4
GLU
14
A
ALA
15
n
5
ALA
15
A
GLY
16
n
6
GLY
16
A
ILE
17
n
7
ILE
17
A
THR
18
n
8
THR
18
A
GLY
19
n
9
GLY
19
A
THR
20
n
10
THR
20
A
TRP
21
n
11
TRP
21
A
SER
22
n
12
SER
22
A
ASP
23
n
13
ASP
23
A
GLN
24
n
14
GLN
24
A
LEU
25
n
15
LEU
25
A
GLY
26
n
16
GLY
26
A
ASP
27
n
17
ASP
27
A
THR
28
n
18
THR
28
A
PHE
29
n
19
PHE
29
A
ILE
30
n
20
ILE
30
A
VAL
31
n
21
VAL
31
A
THR
32
n
22
THR
32
A
ALA
33
n
23
ALA
33
A
GLY
34
n
24
GLY
34
A
ALA
35
n
25
ALA
35
A
ASP
36
n
26
ASP
36
A
GLY
37
n
27
GLY
37
A
ALA
38
n
28
ALA
38
A
LEU
39
n
29
LEU
39
A
THR
40
n
30
THR
40
A
GLY
41
n
31
GLY
41
A
THR
42
n
32
THR
42
A
TYR
43
n
33
TYR
43
A
GLU
44
n
34
GLU
44
A
SER
45
n
35
SER
45
A
ALA
46
n
36
ALA
46
A
VAL
47
n
37
VAL
47
A
GLY
48
n
38
GLY
48
A
ASN
49
n
39
ASN
49
A
ALA
50
n
40
ALA
50
A
GLU
51
n
41
GLU
51
A
SER
52
n
42
SER
52
A
ARG
53
n
43
ARG
53
A
TYR
54
n
44
TYR
54
A
VAL
55
n
45
VAL
55
A
LEU
56
n
46
LEU
56
A
THR
57
n
47
THR
57
A
GLY
58
n
48
GLY
58
A
ARG
59
n
49
ARG
59
A
TYR
60
n
50
TYR
60
A
ASP
61
n
51
ASP
61
A
SER
62
n
52
SER
62
A
ALA
63
n
53
ALA
63
A
PRO
64
n
54
PRO
64
A
ALA
65
n
55
ALA
65
A
THR
66
n
56
THR
66
A
ASP
67
n
57
ASP
67
A
GLY
68
n
58
GLY
68
A
SER
69
n
59
SER
69
A
GLY
70
n
60
GLY
70
A
THR
71
n
61
THR
71
A
ALA
72
n
62
ALA
72
A
LEU
73
n
63
LEU
73
A
GLY
74
n
64
GLY
74
A
TRP
75
n
65
TRP
75
A
THR
76
n
66
THR
76
A
VAL
77
n
67
VAL
77
A
ALA
78
n
68
ALA
78
A
TRP
79
n
69
TRP
79
A
LYS
80
n
70
LYS
80
A
ASN
81
n
71
ASN
81
A
ASN
82
n
72
ASN
82
A
SER
83
n
73
SER
83
A
LYS
84
n
74
LYS
84
A
ASN
85
n
75
ASN
85
A
ALA
86
n
76
ALA
86
A
HIS
87
n
77
HIS
87
A
SER
88
n
78
SER
88
A
ALA
89
n
79
ALA
89
A
THR
90
n
80
THR
90
A
THR
91
n
81
THR
91
A
TRP
92
n
82
TRP
92
A
SER
93
n
83
SER
93
A
GLY
94
n
84
GLY
94
A
GLN
95
n
85
GLN
95
A
TYR
96
n
86
TYR
96
A
VAL
97
n
87
VAL
97
A
GLY
98
n
88
GLY
98
A
GLY
99
n
89
GLY
99
A
ALA
100
n
90
ALA
100
A
ASP
101
n
91
ASP
101
A
ALA
102
n
92
ALA
102
A
LYS
103
n
93
LYS
103
A
ILE
104
n
94
ILE
104
A
ASN
105
n
95
ASN
105
A
THR
106
n
96
THR
106
A
GLN
107
n
97
GLN
107
A
TRP
108
n
98
TRP
108
A
LEU
109
n
99
LEU
109
A
LEU
110
n
100
LEU
110
A
THR
111
n
101
THR
111
A
SER
112
n
102
SER
112
A
GLY
113
n
103
GLY
113
A
THR
114
n
104
THR
114
A
THR
115
n
105
THR
115
A
ASN
116
n
106
ASN
116
A
ALA
117
n
107
ALA
117
A
ASN
118
n
108
ASN
118
A
ALA
119
n
109
ALA
119
A
TRP
120
n
110
TRP
120
A
LYS
121
n
111
LYS
121
A
SER
122
n
112
SER
122
A
THR
123
n
113
THR
123
A
LEU
124
n
114
LEU
124
A
VAL
125
n
115
VAL
125
A
GLY
126
n
116
GLY
126
A
HIS
127
n
117
HIS
127
A
ASP
128
n
118
ASP
128
A
THR
129
n
119
THR
129
A
PHE
130
n
120
PHE
130
A
THR
131
n
121
THR
131
A
LYS
132
n
122
LYS
132
A
VAL
133
n
123
VAL
133
A
LYS
134
n
124
LYS
134
A
PRO
135
n
125
PRO
135
A
SER
136
n
126
SER
136
A
ALA
137
n
127
ALA
137
A
n
128
138
A
n
129
139
A
GLY
11
n
1
GLY
11
B
PRO
12
n
2
PRO
12
B
ALA
13
n
3
ALA
13
B
GLU
14
n
4
GLU
14
B
ALA
15
n
5
ALA
15
B
GLY
16
n
6
GLY
16
B
ILE
17
n
7
ILE
17
B
THR
18
n
8
THR
18
B
GLY
19
n
9
GLY
19
B
THR
20
n
10
THR
20
B
TRP
21
n
11
TRP
21
B
SER
22
n
12
SER
22
B
ASP
23
n
13
ASP
23
B
GLN
24
n
14
GLN
24
B
LEU
25
n
15
LEU
25
B
GLY
26
n
16
GLY
26
B
ASP
27
n
17
ASP
27
B
THR
28
n
18
THR
28
B
PHE
29
n
19
PHE
29
B
ILE
30
n
20
ILE
30
B
VAL
31
n
21
VAL
31
B
THR
32
n
22
THR
32
B
ALA
33
n
23
ALA
33
B
GLY
34
n
24
GLY
34
B
ALA
35
n
25
ALA
35
B
ASP
36
n
26
ASP
36
B
GLY
37
n
27
GLY
37
B
ALA
38
n
28
ALA
38
B
LEU
39
n
29
LEU
39
B
THR
40
n
30
THR
40
B
GLY
41
n
31
GLY
41
B
THR
42
n
32
THR
42
B
TYR
43
n
33
TYR
43
B
GLU
44
n
34
GLU
44
B
SER
45
n
35
SER
45
B
ALA
46
n
36
ALA
46
B
VAL
47
n
37
VAL
47
B
GLY
48
n
38
GLY
48
B
ASN
49
n
39
ASN
49
B
ALA
50
n
40
ALA
50
B
GLU
51
n
41
GLU
51
B
SER
52
n
42
SER
52
B
ARG
53
n
43
ARG
53
B
TYR
54
n
44
TYR
54
B
VAL
55
n
45
VAL
55
B
LEU
56
n
46
LEU
56
B
THR
57
n
47
THR
57
B
GLY
58
n
48
GLY
58
B
ARG
59
n
49
ARG
59
B
TYR
60
n
50
TYR
60
B
ASP
61
n
51
ASP
61
B
SER
62
n
52
SER
62
B
ALA
63
n
53
ALA
63
B
PRO
64
n
54
PRO
64
B
ALA
65
n
55
ALA
65
B
THR
66
n
56
THR
66
B
ASP
67
n
57
ASP
67
B
GLY
68
n
58
GLY
68
B
SER
69
n
59
SER
69
B
GLY
70
n
60
GLY
70
B
THR
71
n
61
THR
71
B
ALA
72
n
62
ALA
72
B
LEU
73
n
63
LEU
73
B
GLY
74
n
64
GLY
74
B
TRP
75
n
65
TRP
75
B
THR
76
n
66
THR
76
B
VAL
77
n
67
VAL
77
B
ALA
78
n
68
ALA
78
B
TRP
79
n
69
TRP
79
B
LYS
80
n
70
LYS
80
B
ASN
81
n
71
ASN
81
B
ASN
82
n
72
ASN
82
B
SER
83
n
73
SER
83
B
LYS
84
n
74
LYS
84
B
ASN
85
n
75
ASN
85
B
ALA
86
n
76
ALA
86
B
HIS
87
n
77
HIS
87
B
SER
88
n
78
SER
88
B
ALA
89
n
79
ALA
89
B
THR
90
n
80
THR
90
B
THR
91
n
81
THR
91
B
TRP
92
n
82
TRP
92
B
SER
93
n
83
SER
93
B
GLY
94
n
84
GLY
94
B
GLN
95
n
85
GLN
95
B
TYR
96
n
86
TYR
96
B
VAL
97
n
87
VAL
97
B
GLY
98
n
88
GLY
98
B
GLY
99
n
89
GLY
99
B
ALA
100
n
90
ALA
100
B
ASP
101
n
91
ASP
101
B
ALA
102
n
92
ALA
102
B
LYS
103
n
93
LYS
103
B
ILE
104
n
94
ILE
104
B
ASN
105
n
95
ASN
105
B
THR
106
n
96
THR
106
B
GLN
107
n
97
GLN
107
B
TRP
108
n
98
TRP
108
B
LEU
109
n
99
LEU
109
B
LEU
110
n
100
LEU
110
B
THR
111
n
101
THR
111
B
SER
112
n
102
SER
112
B
GLY
113
n
103
GLY
113
B
THR
114
n
104
THR
114
B
THR
115
n
105
THR
115
B
ASN
116
n
106
ASN
116
B
ALA
117
n
107
ALA
117
B
ASN
118
n
108
ASN
118
B
ALA
119
n
109
ALA
119
B
TRP
120
n
110
TRP
120
B
LYS
121
n
111
LYS
121
B
SER
122
n
112
SER
122
B
THR
123
n
113
THR
123
B
LEU
124
n
114
LEU
124
B
VAL
125
n
115
VAL
125
B
GLY
126
n
116
GLY
126
B
HIS
127
n
117
HIS
127
B
ASP
128
n
118
ASP
128
B
THR
129
n
119
THR
129
B
PHE
130
n
120
PHE
130
B
THR
131
n
121
THR
131
B
LYS
132
n
122
LYS
132
B
VAL
133
n
123
VAL
133
B
LYS
134
n
124
LYS
134
B
n
125
135
B
n
126
136
B
n
127
137
B
n
128
138
B
n
129
139
B
GLY
11
n
1
GLY
11
C
PRO
12
n
2
PRO
12
C
ALA
13
n
3
ALA
13
C
GLU
14
n
4
GLU
14
C
ALA
15
n
5
ALA
15
C
GLY
16
n
6
GLY
16
C
ILE
17
n
7
ILE
17
C
THR
18
n
8
THR
18
C
GLY
19
n
9
GLY
19
C
THR
20
n
10
THR
20
C
TRP
21
n
11
TRP
21
C
SER
22
n
12
SER
22
C
ASP
23
n
13
ASP
23
C
GLN
24
n
14
GLN
24
C
LEU
25
n
15
LEU
25
C
GLY
26
n
16
GLY
26
C
ASP
27
n
17
ASP
27
C
THR
28
n
18
THR
28
C
PHE
29
n
19
PHE
29
C
ILE
30
n
20
ILE
30
C
VAL
31
n
21
VAL
31
C
THR
32
n
22
THR
32
C
ALA
33
n
23
ALA
33
C
GLY
34
n
24
GLY
34
C
ALA
35
n
25
ALA
35
C
ASP
36
n
26
ASP
36
C
GLY
37
n
27
GLY
37
C
ALA
38
n
28
ALA
38
C
LEU
39
n
29
LEU
39
C
THR
40
n
30
THR
40
C
GLY
41
n
31
GLY
41
C
THR
42
n
32
THR
42
C
TYR
43
n
33
TYR
43
C
GLU
44
n
34
GLU
44
C
SER
45
n
35
SER
45
C
ALA
46
n
36
ALA
46
C
VAL
47
n
37
VAL
47
C
GLY
48
n
38
GLY
48
C
ASN
49
n
39
ASN
49
C
ALA
50
n
40
ALA
50
C
GLU
51
n
41
GLU
51
C
SER
52
n
42
SER
52
C
ARG
53
n
43
ARG
53
C
TYR
54
n
44
TYR
54
C
VAL
55
n
45
VAL
55
C
LEU
56
n
46
LEU
56
C
THR
57
n
47
THR
57
C
GLY
58
n
48
GLY
58
C
ARG
59
n
49
ARG
59
C
TYR
60
n
50
TYR
60
C
ASP
61
n
51
ASP
61
C
SER
62
n
52
SER
62
C
ALA
63
n
53
ALA
63
C
PRO
64
n
54
PRO
64
C
ALA
65
n
55
ALA
65
C
THR
66
n
56
THR
66
C
ASP
67
n
57
ASP
67
C
GLY
68
n
58
GLY
68
C
SER
69
n
59
SER
69
C
GLY
70
n
60
GLY
70
C
THR
71
n
61
THR
71
C
ALA
72
n
62
ALA
72
C
LEU
73
n
63
LEU
73
C
GLY
74
n
64
GLY
74
C
TRP
75
n
65
TRP
75
C
THR
76
n
66
THR
76
C
VAL
77
n
67
VAL
77
C
ALA
78
n
68
ALA
78
C
TRP
79
n
69
TRP
79
C
LYS
80
n
70
LYS
80
C
ASN
81
n
71
ASN
81
C
ASN
82
n
72
ASN
82
C
SER
83
n
73
SER
83
C
LYS
84
n
74
LYS
84
C
ASN
85
n
75
ASN
85
C
ALA
86
n
76
ALA
86
C
HIS
87
n
77
HIS
87
C
SER
88
n
78
SER
88
C
ALA
89
n
79
ALA
89
C
THR
90
n
80
THR
90
C
THR
91
n
81
THR
91
C
TRP
92
n
82
TRP
92
C
SER
93
n
83
SER
93
C
GLY
94
n
84
GLY
94
C
GLN
95
n
85
GLN
95
C
TYR
96
n
86
TYR
96
C
VAL
97
n
87
VAL
97
C
GLY
98
n
88
GLY
98
C
GLY
99
n
89
GLY
99
C
ALA
100
n
90
ALA
100
C
ASP
101
n
91
ASP
101
C
ALA
102
n
92
ALA
102
C
LYS
103
n
93
LYS
103
C
ILE
104
n
94
ILE
104
C
ASN
105
n
95
ASN
105
C
THR
106
n
96
THR
106
C
GLN
107
n
97
GLN
107
C
TRP
108
n
98
TRP
108
C
LEU
109
n
99
LEU
109
C
LEU
110
n
100
LEU
110
C
THR
111
n
101
THR
111
C
SER
112
n
102
SER
112
C
GLY
113
n
103
GLY
113
C
THR
114
n
104
THR
114
C
THR
115
n
105
THR
115
C
ASN
116
n
106
ASN
116
C
ALA
117
n
107
ALA
117
C
ASN
118
n
108
ASN
118
C
ALA
119
n
109
ALA
119
C
TRP
120
n
110
TRP
120
C
LYS
121
n
111
LYS
121
C
SER
122
n
112
SER
122
C
THR
123
n
113
THR
123
C
LEU
124
n
114
LEU
124
C
VAL
125
n
115
VAL
125
C
GLY
126
n
116
GLY
126
C
HIS
127
n
117
HIS
127
C
ASP
128
n
118
ASP
128
C
THR
129
n
119
THR
129
C
PHE
130
n
120
PHE
130
C
THR
131
n
121
THR
131
C
LYS
132
n
122
LYS
132
C
VAL
133
n
123
VAL
133
C
LYS
134
n
124
LYS
134
C
PRO
135
n
125
PRO
135
C
n
126
136
C
n
127
137
C
n
128
138
C
n
129
139
C
GLY
11
n
1
GLY
11
D
PRO
12
n
2
PRO
12
D
ALA
13
n
3
ALA
13
D
GLU
14
n
4
GLU
14
D
ALA
15
n
5
ALA
15
D
GLY
16
n
6
GLY
16
D
ILE
17
n
7
ILE
17
D
THR
18
n
8
THR
18
D
GLY
19
n
9
GLY
19
D
THR
20
n
10
THR
20
D
TRP
21
n
11
TRP
21
D
SER
22
n
12
SER
22
D
ASP
23
n
13
ASP
23
D
GLN
24
n
14
GLN
24
D
LEU
25
n
15
LEU
25
D
GLY
26
n
16
GLY
26
D
ASP
27
n
17
ASP
27
D
THR
28
n
18
THR
28
D
PHE
29
n
19
PHE
29
D
ILE
30
n
20
ILE
30
D
VAL
31
n
21
VAL
31
D
THR
32
n
22
THR
32
D
ALA
33
n
23
ALA
33
D
GLY
34
n
24
GLY
34
D
ALA
35
n
25
ALA
35
D
ASP
36
n
26
ASP
36
D
GLY
37
n
27
GLY
37
D
ALA
38
n
28
ALA
38
D
LEU
39
n
29
LEU
39
D
THR
40
n
30
THR
40
D
GLY
41
n
31
GLY
41
D
THR
42
n
32
THR
42
D
TYR
43
n
33
TYR
43
D
GLU
44
n
34
GLU
44
D
SER
45
n
35
SER
45
D
ALA
46
n
36
ALA
46
D
VAL
47
n
37
VAL
47
D
GLY
48
n
38
GLY
48
D
ASN
49
n
39
ASN
49
D
ALA
50
n
40
ALA
50
D
GLU
51
n
41
GLU
51
D
SER
52
n
42
SER
52
D
ARG
53
n
43
ARG
53
D
TYR
54
n
44
TYR
54
D
VAL
55
n
45
VAL
55
D
LEU
56
n
46
LEU
56
D
THR
57
n
47
THR
57
D
GLY
58
n
48
GLY
58
D
ARG
59
n
49
ARG
59
D
TYR
60
n
50
TYR
60
D
ASP
61
n
51
ASP
61
D
SER
62
n
52
SER
62
D
ALA
63
n
53
ALA
63
D
PRO
64
n
54
PRO
64
D
ALA
65
n
55
ALA
65
D
THR
66
n
56
THR
66
D
ASP
67
n
57
ASP
67
D
GLY
68
n
58
GLY
68
D
SER
69
n
59
SER
69
D
GLY
70
n
60
GLY
70
D
THR
71
n
61
THR
71
D
ALA
72
n
62
ALA
72
D
LEU
73
n
63
LEU
73
D
GLY
74
n
64
GLY
74
D
TRP
75
n
65
TRP
75
D
THR
76
n
66
THR
76
D
VAL
77
n
67
VAL
77
D
ALA
78
n
68
ALA
78
D
TRP
79
n
69
TRP
79
D
LYS
80
n
70
LYS
80
D
ASN
81
n
71
ASN
81
D
ASN
82
n
72
ASN
82
D
SER
83
n
73
SER
83
D
LYS
84
n
74
LYS
84
D
ASN
85
n
75
ASN
85
D
ALA
86
n
76
ALA
86
D
HIS
87
n
77
HIS
87
D
SER
88
n
78
SER
88
D
ALA
89
n
79
ALA
89
D
THR
90
n
80
THR
90
D
THR
91
n
81
THR
91
D
TRP
92
n
82
TRP
92
D
SER
93
n
83
SER
93
D
GLY
94
n
84
GLY
94
D
GLN
95
n
85
GLN
95
D
TYR
96
n
86
TYR
96
D
VAL
97
n
87
VAL
97
D
GLY
98
n
88
GLY
98
D
GLY
99
n
89
GLY
99
D
ALA
100
n
90
ALA
100
D
ASP
101
n
91
ASP
101
D
ALA
102
n
92
ALA
102
D
LYS
103
n
93
LYS
103
D
ILE
104
n
94
ILE
104
D
ASN
105
n
95
ASN
105
D
THR
106
n
96
THR
106
D
GLN
107
n
97
GLN
107
D
TRP
108
n
98
TRP
108
D
LEU
109
n
99
LEU
109
D
LEU
110
n
100
LEU
110
D
THR
111
n
101
THR
111
D
SER
112
n
102
SER
112
D
GLY
113
n
103
GLY
113
D
THR
114
n
104
THR
114
D
THR
115
n
105
THR
115
D
ASN
116
n
106
ASN
116
D
ALA
117
n
107
ALA
117
D
ASN
118
n
108
ASN
118
D
ALA
119
n
109
ALA
119
D
TRP
120
n
110
TRP
120
D
LYS
121
n
111
LYS
121
D
SER
122
n
112
SER
122
D
THR
123
n
113
THR
123
D
LEU
124
n
114
LEU
124
D
VAL
125
n
115
VAL
125
D
GLY
126
n
116
GLY
126
D
HIS
127
n
117
HIS
127
D
ASP
128
n
118
ASP
128
D
THR
129
n
119
THR
129
D
PHE
130
n
120
PHE
130
D
THR
131
n
121
THR
131
D
LYS
132
n
122
LYS
132
D
VAL
133
n
123
VAL
133
D
LYS
134
n
124
LYS
134
D
PRO
135
n
125
PRO
135
D
n
126
136
D
n
127
137
D
n
128
138
D
n
129
139
D
0.3427
-0.1080
-0.0159
0.2859
0.0388
0.1376
0.0209
0.0190
-0.0348
0.0124
0.0014
-0.0055
0.0343
-0.0018
-0.0223
0.0407
0.0023
-0.0095
0.0016
0.0015
0.0603
refined
3.6811
-8.8420
-12.3387
X-RAY DIFFRACTION
0.4122
0.0183
0.1175
0.1550
0.0430
0.1552
0.0033
-0.0195
0.0218
-0.0018
0.0027
-0.0144
-0.0425
-0.0072
-0.0060
0.0388
-0.0000
0.0015
0.0011
0.0006
0.0563
refined
4.3824
6.9959
-8.0424
X-RAY DIFFRACTION
0.2296
0.0269
-0.0637
0.1801
-0.0029
0.1669
0.0062
0.0017
-0.0268
0.0083
0.0112
0.0055
0.0339
-0.0090
-0.0174
0.0378
-0.0021
-0.0027
0.0015
-0.0017
0.0569
refined
-23.3618
-7.2459
-7.9499
X-RAY DIFFRACTION
0.3019
-0.0621
-0.1080
0.1509
0.0430
0.2162
0.0243
0.0287
0.0334
-0.0016
0.0017
-0.0000
-0.0431
-0.0053
-0.0260
0.0407
0.0044
0.0055
0.0038
-0.0011
0.0564
refined
-22.6714
8.3664
-12.5403
X-RAY DIFFRACTION
A
11
A
137
X-RAY DIFFRACTION
1
B
11
B
134
X-RAY DIFFRACTION
2
C
11
C
135
X-RAY DIFFRACTION
3
D
11
D
135
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
4
tetrameric
11580
-104
19780
A
GLU
14
A
OE1
GLU
4
1_555
A
CD
204
H
CD
CD
1_555
A
GLU
14
A
OE2
GLU
4
1_555
51.8
A
GLU
14
A
OE1
GLU
4
1_555
A
CD
204
H
CD
CD
1_555
A
SER
62
A
O
SER
52
1_555
154.3
A
GLU
14
A
OE2
GLU
4
1_555
A
CD
204
H
CD
CD
1_555
A
SER
62
A
O
SER
52
1_555
102.9
A
GLU
14
A
OE1
GLU
4
1_555
A
CD
204
H
CD
CD
1_555
A
HOH
337
W
O
HOH
1_555
93.1
A
GLU
14
A
OE2
GLU
4
1_555
A
CD
204
H
CD
CD
1_555
A
HOH
337
W
O
HOH
1_555
118.0
A
SER
62
A
O
SER
52
1_555
A
CD
204
H
CD
CD
1_555
A
HOH
337
W
O
HOH
1_555
96.6
A
GLU
44
A
OE2
GLU
34
1_555
A
CD
205
I
CD
CD
1_555
A
GLU
44
A
OE1
GLU
34
1_555
52.3
A
GLU
44
A
OE2
GLU
34
1_555
A
CD
205
I
CD
CD
1_555
A
HOH
356
W
O
HOH
1_555
136.5
A
GLU
44
A
OE1
GLU
34
1_555
A
CD
205
I
CD
CD
1_555
A
HOH
356
W
O
HOH
1_555
84.8
A
ASP
101
A
OD2
ASP
91
1_555
A
CD
203
G
CD
CD
1_555
A
ASP
101
A
OD1
ASP
91
1_555
57.6
A
ASP
101
A
OD2
ASP
91
1_555
A
CD
203
G
CD
CD
1_555
A
HOH
333
W
O
HOH
1_555
133.4
A
ASP
101
A
OD1
ASP
91
1_555
A
CD
203
G
CD
CD
1_555
A
HOH
333
W
O
HOH
1_555
91.7
A
ASP
101
A
OD2
ASP
91
1_555
A
CD
203
G
CD
CD
1_555
A
HOH
334
W
O
HOH
1_555
106.3
A
ASP
101
A
OD1
ASP
91
1_555
A
CD
203
G
CD
CD
1_555
A
HOH
334
W
O
HOH
1_555
157.1
A
HOH
333
W
O
HOH
1_555
A
CD
203
G
CD
CD
1_555
A
HOH
334
W
O
HOH
1_555
89.5
B
GLU
14
B
OE1
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
B
GLU
14
B
OE2
GLU
4
1_555
50.6
B
GLU
14
B
OE1
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
B
SER
62
B
O
SER
52
1_555
151.0
B
GLU
14
B
OE2
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
B
SER
62
B
O
SER
52
1_555
104.8
B
GLU
14
B
OE1
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
B
HOH
325
X
O
HOH
1_555
95.6
B
GLU
14
B
OE2
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
B
HOH
325
X
O
HOH
1_555
126.0
B
SER
62
B
O
SER
52
1_555
B
CD
202
L
CD
CD
1_555
B
HOH
325
X
O
HOH
1_555
113.0
B
GLU
14
B
OE1
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
B
HOH
331
X
O
HOH
1_555
86.0
B
GLU
14
B
OE2
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
B
HOH
331
X
O
HOH
1_555
119.8
B
SER
62
B
O
SER
52
1_555
B
CD
202
L
CD
CD
1_555
B
HOH
331
X
O
HOH
1_555
97.1
B
HOH
325
X
O
HOH
1_555
B
CD
202
L
CD
CD
1_555
B
HOH
331
X
O
HOH
1_555
92.7
C
HIS
87
C
NE2
HIS
77
1_555
C
CD
203
O
CD
CD
1_555
C
HOH
331
Y
O
HOH
1_555
97.4
C
HIS
87
C
NE2
HIS
77
1_555
C
CD
203
O
CD
CD
1_555
D
HOH
332
Z
O
HOH
1_555
95.4
C
HOH
331
Y
O
HOH
1_555
C
CD
203
O
CD
CD
1_555
D
HOH
332
Z
O
HOH
1_555
148.8
D
GLU
14
D
OE1
GLU
4
1_555
D
CD
204
S
CD
CD
1_555
D
GLU
14
D
OE2
GLU
4
1_555
49.0
D
GLU
14
D
OE1
GLU
4
1_555
D
CD
204
S
CD
CD
1_555
D
SER
62
D
O
SER
52
1_555
152.5
D
GLU
14
D
OE2
GLU
4
1_555
D
CD
204
S
CD
CD
1_555
D
SER
62
D
O
SER
52
1_555
104.8
D
GLU
14
D
OE1
GLU
4
1_555
D
CD
204
S
CD
CD
1_555
D
HOH
327
Z
O
HOH
1_555
91.5
D
GLU
14
D
OE2
GLU
4
1_555
D
CD
204
S
CD
CD
1_555
D
HOH
327
Z
O
HOH
1_555
121.2
D
SER
62
D
O
SER
52
1_555
D
CD
204
S
CD
CD
1_555
D
HOH
327
Z
O
HOH
1_555
98.2
D
GLU
44
D
OE2
GLU
34
1_555
D
CD
205
T
CD
CD
1_555
D
GLU
44
D
OE1
GLU
34
1_555
57.2
D
HIS
87
D
NE2
HIS
77
1_555
D
CD
203
R
CD
CD
1_555
D
HOH
326
Z
O
HOH
1_555
91.0
D
HIS
87
D
NE2
HIS
77
1_555
D
CD
203
R
CD
CD
1_555
D
HOH
343
Z
O
HOH
1_555
93.2
D
HOH
326
Z
O
HOH
1_555
D
CD
203
R
CD
CD
1_555
D
HOH
343
Z
O
HOH
1_555
123.2
D
ASP
101
D
OD1
ASP
91
1_555
D
CD
206
U
CD
CD
1_555
D
ASP
101
D
OD2
ASP
91
1_555
54.7
D
ASP
101
D
OD1
ASP
91
1_555
D
CD
206
U
CD
CD
1_555
D
HOH
344
Z
O
HOH
1_555
153.5
D
ASP
101
D
OD2
ASP
91
1_555
D
CD
206
U
CD
CD
1_555
D
HOH
344
Z
O
HOH
1_555
118.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
21
A
N
TRP
11
A
O
PHE
29
A
O
PHE
19
A
N
THR
28
A
N
THR
18
A
O
GLU
44
A
O
GLU
34
A
N
TYR
43
A
N
TYR
33
A
O
TYR
54
A
O
TYR
44
A
N
ARG
59
A
N
ARG
49
A
O
GLY
74
A
O
GLY
64
A
N
THR
71
A
N
THR
61
A
O
TYR
96
A
O
TYR
86
A
N
ALA
89
A
N
ALA
79
A
O
THR
111
A
O
THR
101
A
N
ILE
104
A
N
ILE
94
A
O
PHE
130
A
O
PHE
120
A
O
THR
131
A
O
THR
121
A
N
SER
22
A
N
SER
12
B
N
TRP
21
B
N
TRP
11
B
O
PHE
29
B
O
PHE
19
B
N
THR
28
B
N
THR
18
B
O
GLU
44
B
O
GLU
34
B
N
TYR
43
B
N
TYR
33
B
O
TYR
54
B
O
TYR
44
B
N
THR
57
B
N
THR
47
B
O
THR
76
B
O
THR
66
B
N
VAL
77
B
N
VAL
67
B
O
THR
90
B
O
THR
80
B
N
VAL
97
B
N
VAL
87
B
O
LYS
103
B
O
LYS
93
B
N
ILE
104
B
N
ILE
94
B
O
PHE
130
B
O
PHE
120
B
O
VAL
133
B
O
VAL
123
B
N
THR
20
B
N
THR
10
C
N
TRP
21
C
N
TRP
11
C
O
PHE
29
C
O
PHE
19
C
N
THR
28
C
N
THR
18
C
O
GLU
44
C
O
GLU
34
C
N
TYR
43
C
N
TYR
33
C
O
TYR
54
C
O
TYR
44
C
N
THR
57
C
N
THR
47
C
O
THR
76
C
O
THR
66
C
N
VAL
77
C
N
VAL
67
C
O
THR
90
C
O
THR
80
C
N
ALA
89
C
N
ALA
79
C
O
THR
111
C
O
THR
101
C
N
ILE
104
C
N
ILE
94
C
O
PHE
130
C
O
PHE
120
C
O
THR
131
C
O
THR
121
C
N
SER
22
C
N
SER
12
D
N
GLY
19
D
N
GLY
9
D
O
VAL
31
D
O
VAL
21
D
N
THR
28
D
N
THR
18
D
O
GLU
44
D
O
GLU
34
D
N
LEU
39
D
N
LEU
29
D
O
GLY
58
D
O
GLY
48
D
N
THR
57
D
N
THR
47
D
O
THR
76
D
O
THR
66
D
N
TRP
79
D
N
TRP
69
D
O
ALA
86
D
O
ALA
76
D
N
SER
93
D
N
SER
83
D
O
GLN
107
D
O
GLN
97
D
N
ILE
104
D
N
ILE
94
D
O
PHE
130
D
O
PHE
120
D
O
VAL
133
D
O
VAL
123
D
N
THR
20
D
N
THR
10
1
A
C17
P6G
206
J
C17
P6G
1
1
N
1
A
C18
P6G
206
J
C18
P6G
1
1
N
1
A
O19
P6G
206
J
O19
P6G
1
1
N
1
D
C17
P6G
207
V
C17
P6G
1
1
N
1
D
C18
P6G
207
V
C18
P6G
1
1
N
1
D
O19
P6G
207
V
O19
P6G
1
1
N
1
A
ALA
138
A
ALA
128
1
Y
1
A
SER
139
A
SER
129
1
Y
1
B
PRO
135
B
PRO
125
1
Y
1
B
SER
136
B
SER
126
1
Y
1
B
ALA
137
B
ALA
127
1
Y
1
B
ALA
138
B
ALA
128
1
Y
1
B
SER
139
B
SER
129
1
Y
1
C
SER
136
C
SER
126
1
Y
1
C
ALA
137
C
ALA
127
1
Y
1
C
ALA
138
C
ALA
128
1
Y
1
C
SER
139
C
SER
129
1
Y
1
D
SER
136
D
SER
126
1
Y
1
D
ALA
137
D
ALA
127
1
Y
1
D
ALA
138
D
ALA
128
1
Y
1
D
SER
139
D
SER
129
1
Y
1
D
D
CD
O
CD
HOH
206
335
1.33
1
A
A
NE2
O
HIS
HOH
127
317
1.42
A
1
B
B
NE2
O
HIS
HOH
127
318
1.77
B
1
B
D
O
O
HOH
HOH
319
321
1.88
1
C
C
O
O
HOH
HOH
319
324
2.01
1
A
B
O
O
HOH
HOH
352
353
2.03
1
A
A
CE1
O
HIS
HOH
127
317
2.15
A
1
3.04
0.50
120.30
123.34
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
53
53
53
N
1
-3.52
0.50
120.30
116.78
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
53
53
53
N
1
3.21
0.50
120.30
123.51
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
53
53
53
N
1
-3.46
0.50
120.30
116.84
D
D
D
NE
CZ
NH1
ARG
ARG
ARG
53
53
53
N
1
3.84
0.50
120.30
124.14
D
D
D
NE
CZ
NH2
ARG
ARG
ARG
53
53
53
N
1
A
A
CB
OG
SER
SER
22
22
-0.090
0.013
1.418
1.328
N
1
A
SER
52
62.34
-152.31
1
A
ASP
67
-106.71
74.97
1
A
ASN
81
-136.03
-158.17
1
B
SER
52
63.09
-157.48
1
B
ASP
101
-103.40
62.90
1
C
SER
52
66.76
-162.43
1
C
ASP
101
-116.06
58.67
1
C
LYS
134
-179.62
130.77
1
D
SER
52
79.11
-157.46
1
D
ASP
101
-108.75
51.67
15.935
-0.40
0.00
-0.00
1.66
-0.00
-1.26
0.970
0.947
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23616
0.17290
0.17613
1.50
50.00
3235
60475
5.1
96.94
5.107
0.078
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.112
0.095
0.80
0.80
1.20
3WYQ
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.50
50.00
233
4044
159
0
3652
0.018
0.020
3986
0.001
0.020
3595
1.912
1.934
5457
0.877
3.000
8302
7.272
5.000
527
26.406
24.966
147
14.443
15.000
529
12.470
15.000
8
0.135
0.200
622
0.009
0.020
4616
0.002
0.020
928
2.999
1.260
2036
2.952
1.259
2035
3.618
1.890
2545
3.619
1.892
2546
4.778
1.676
1950
4.779
1.678
1951
5.436
2.326
2899
5.176
11.272
4485
5.177
11.279
4486
3.630
3.000
7581
40.256
5.000
132
10.738
5.000
7589
0.415
0.357
1.541
252
4332
20
95.74
1.50
50
3WZO
65724
64012
0.035
1
17.6
6.3
97.4
1.50
1.55
3.08
64012
0.232
1
6.3
97.4
data collection
SERGUI
phasing
PHASER
refinement
REFMAC
5.8.0049
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with biotin long tail (BTNtail) at 1.5 A resolution
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
2
N
N
4
N
N
2
N
N
3
N
N
4
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
GLY
11
A
GLY
1
HELX_P
A
THR
18
A
THR
8
1
1
8
A
THR
115
A
THR
105
HELX_P
A
LYS
121
A
LYS
111
5
2
7
B
PRO
12
B
PRO
2
HELX_P
B
THR
18
B
THR
8
1
3
7
B
THR
115
B
THR
105
HELX_P
B
LYS
121
B
LYS
111
5
4
7
C
PRO
12
C
PRO
2
HELX_P
C
THR
18
C
THR
8
1
5
7
C
THR
115
C
THR
105
HELX_P
C
LYS
121
C
LYS
111
5
6
7
D
PRO
12
D
PRO
2
HELX_P
D
THR
18
D
THR
8
1
7
7
D
THR
115
D
THR
105
HELX_P
D
LYS
121
D
LYS
111
5
8
7
metalc
2.481
A
GLU
14
A
OE1
GLU
4
1_555
A
CD
204
H
CD
CD
1_555
metalc
2.500
A
GLU
14
A
OE2
GLU
4
1_555
A
CD
204
H
CD
CD
1_555
metalc
2.469
A
GLU
44
A
OE2
GLU
34
1_555
A
CD
205
I
CD
CD
1_555
metalc
2.513
A
GLU
44
A
OE1
GLU
34
1_555
A
CD
205
I
CD
CD
1_555
metalc
2.515
A
SER
62
A
O
SER
52
1_555
A
CD
204
H
CD
CD
1_555
metalc
2.110
A
ASP
101
A
OD2
ASP
91
1_555
A
CD
203
G
CD
CD
1_555
metalc
2.352
A
ASP
101
A
OD1
ASP
91
1_555
A
CD
203
G
CD
CD
1_555
metalc
2.323
A
CD
203
G
CD
CD
1_555
A
HOH
333
W
O
HOH
1_555
metalc
2.396
A
CD
203
G
CD
CD
1_555
A
HOH
334
W
O
HOH
1_555
metalc
2.584
A
CD
204
H
CD
CD
1_555
A
HOH
337
W
O
HOH
1_555
metalc
2.461
A
CD
205
I
CD
CD
1_555
A
HOH
356
W
O
HOH
1_555
metalc
2.529
B
GLU
14
B
OE1
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
metalc
2.614
B
GLU
14
B
OE2
GLU
4
1_555
B
CD
202
L
CD
CD
1_555
metalc
2.450
B
SER
62
B
O
SER
52
1_555
B
CD
202
L
CD
CD
1_555
metalc
2.312
B
CD
202
L
CD
CD
1_555
B
HOH
325
X
O
HOH
1_555
metalc
2.579
B
CD
202
L
CD
CD
1_555
B
HOH
331
X
O
HOH
1_555
metalc
2.353
C
HIS
87
C
NE2
HIS
77
1_555
C
CD
203
O
CD
CD
1_555
metalc
2.133
C
CD
203
O
CD
CD
1_555
C
HOH
331
Y
O
HOH
1_555
metalc
2.423
C
CD
203
O
CD
CD
1_555
D
HOH
332
Z
O
HOH
1_555
metalc
2.633
D
GLU
14
D
OE1
GLU
4
1_555
D
CD
204
S
CD
CD
1_555
metalc
2.642
D
GLU
14
D
OE2
GLU
4
1_555
D
CD
204
S
CD
CD
1_555
metalc
2.038
D
GLU
44
D
OE2
GLU
34
1_555
D
CD
205
T
CD
CD
1_555
metalc
2.479
D
GLU
44
D
OE1
GLU
34
1_555
D
CD
205
T
CD
CD
1_555
metalc
2.440
D
SER
62
D
O
SER
52
1_555
D
CD
204
S
CD
CD
1_555
metalc
2.335
D
HIS
87
D
NE2
HIS
77
1_555
D
CD
203
R
CD
CD
1_555
metalc
2.133
D
ASP
101
D
OD1
ASP
91
1_555
D
CD
206
U
CD
CD
1_555
metalc
2.558
D
ASP
101
D
OD2
ASP
91
1_555
D
CD
206
U
CD
CD
1_555
metalc
2.569
D
CD
203
R
CD
CD
1_555
D
HOH
326
Z
O
HOH
1_555
metalc
2.424
D
CD
203
R
CD
CD
1_555
D
HOH
343
Z
O
HOH
1_555
metalc
2.510
D
CD
204
S
CD
CD
1_555
D
HOH
327
Z
O
HOH
1_555
metalc
2.265
D
CD
206
U
CD
CD
1_555
D
HOH
344
Z
O
HOH
1_555
BIOTIN BINDING PROTEIN
beta-barrel, BIOTIN BINDING PROTEIN
D
LYS
134
D
LYS
124
1
D
PRO
135
D
PRO
125
-18.05
SAV_STRAV
UNP
1
37
P22629
AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTW
SGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAAS
37
163
3WZO
13
139
P22629
A
1
3
129
37
163
3WZO
13
139
P22629
B
1
3
129
37
163
3WZO
13
139
P22629
C
1
3
129
37
163
3WZO
13
139
P22629
D
1
3
129
1
expression tag
GLY
11
3WZO
A
P22629
UNP
1
1
expression tag
PRO
12
3WZO
A
P22629
UNP
2
1
TYR
engineered mutation
SER
22
3WZO
A
P22629
UNP
46
12
1
ASN
engineered mutation
ASP
23
3WZO
A
P22629
UNP
47
13
1
SER
engineered mutation
ASP
27
3WZO
A
P22629
UNP
51
17
1
TYR
engineered mutation
SER
83
3WZO
A
P22629
UNP
107
73
1
ARG
engineered mutation
LYS
84
3WZO
A
P22629
UNP
108
74
1
GLU
engineered mutation
ASP
101
3WZO
A
P22629
UNP
125
91
1
ARG
engineered mutation
LYS
103
3WZO
A
P22629
UNP
127
93
1
GLU
engineered mutation
ASN
116
3WZO
A
P22629
UNP
140
106
2
expression tag
GLY
11
3WZO
B
P22629
UNP
1
2
expression tag
PRO
12
3WZO
B
P22629
UNP
2
2
TYR
engineered mutation
SER
22
3WZO
B
P22629
UNP
46
12
2
ASN
engineered mutation
ASP
23
3WZO
B
P22629
UNP
47
13
2
SER
engineered mutation
ASP
27
3WZO
B
P22629
UNP
51
17
2
TYR
engineered mutation
SER
83
3WZO
B
P22629
UNP
107
73
2
ARG
engineered mutation
LYS
84
3WZO
B
P22629
UNP
108
74
2
GLU
engineered mutation
ASP
101
3WZO
B
P22629
UNP
125
91
2
ARG
engineered mutation
LYS
103
3WZO
B
P22629
UNP
127
93
2
GLU
engineered mutation
ASN
116
3WZO
B
P22629
UNP
140
106
3
expression tag
GLY
11
3WZO
C
P22629
UNP
1
3
expression tag
PRO
12
3WZO
C
P22629
UNP
2
3
TYR
engineered mutation
SER
22
3WZO
C
P22629
UNP
46
12
3
ASN
engineered mutation
ASP
23
3WZO
C
P22629
UNP
47
13
3
SER
engineered mutation
ASP
27
3WZO
C
P22629
UNP
51
17
3
TYR
engineered mutation
SER
83
3WZO
C
P22629
UNP
107
73
3
ARG
engineered mutation
LYS
84
3WZO
C
P22629
UNP
108
74
3
GLU
engineered mutation
ASP
101
3WZO
C
P22629
UNP
125
91
3
ARG
engineered mutation
LYS
103
3WZO
C
P22629
UNP
127
93
3
GLU
engineered mutation
ASN
116
3WZO
C
P22629
UNP
140
106
4
expression tag
GLY
11
3WZO
D
P22629
UNP
1
4
expression tag
PRO
12
3WZO
D
P22629
UNP
2
4
TYR
engineered mutation
SER
22
3WZO
D
P22629
UNP
46
12
4
ASN
engineered mutation
ASP
23
3WZO
D
P22629
UNP
47
13
4
SER
engineered mutation
ASP
27
3WZO
D
P22629
UNP
51
17
4
TYR
engineered mutation
SER
83
3WZO
D
P22629
UNP
107
73
4
ARG
engineered mutation
LYS
84
3WZO
D
P22629
UNP
108
74
4
GLU
engineered mutation
ASP
101
3WZO
D
P22629
UNP
125
91
4
ARG
engineered mutation
LYS
103
3WZO
D
P22629
UNP
127
93
4
GLU
engineered mutation
ASN
116
3WZO
D
P22629
UNP
140
106
9
9
9
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
19
A
GLY
9
A
SER
22
A
SER
12
A
THR
28
A
THR
18
A
GLY
34
A
GLY
24
A
ALA
38
A
ALA
28
A
GLU
44
A
GLU
34
A
TYR
54
A
TYR
44
A
TYR
60
A
TYR
50
A
THR
71
A
THR
61
A
LYS
80
A
LYS
70
A
ASN
85
A
ASN
75
A
VAL
97
A
VAL
87
A
LYS
103
A
LYS
93
A
SER
112
A
SER
102
A
THR
123
A
THR
113
A
LYS
132
A
LYS
122
A
GLY
19
A
GLY
9
A
SER
22
A
SER
12
B
GLY
19
B
GLY
9
B
SER
22
B
SER
12
B
THR
28
B
THR
18
B
GLY
34
B
GLY
24
B
ALA
38
B
ALA
28
B
GLU
44
B
GLU
34
B
TYR
54
B
TYR
44
B
TYR
60
B
TYR
50
B
THR
71
B
THR
61
B
LYS
80
B
LYS
70
B
ASN
85
B
ASN
75
B
VAL
97
B
VAL
87
B
LYS
103
B
LYS
93
B
SER
112
B
SER
102
B
THR
123
B
THR
113
B
LYS
134
B
LYS
124
B
GLY
19
B
GLY
9
B
SER
22
B
SER
12
C
GLY
19
C
GLY
9
C
SER
22
C
SER
12
C
THR
28
C
THR
18
C
GLY
34
C
GLY
24
C
ALA
38
C
ALA
28
C
GLU
44
C
GLU
34
C
TYR
54
C
TYR
44
C
TYR
60
C
TYR
50
C
THR
71
C
THR
61
C
LYS
80
C
LYS
70
C
ASN
85
C
ASN
75
C
VAL
97
C
VAL
87
C
LYS
103
C
LYS
93
C
SER
112
C
SER
102
C
THR
123
C
THR
113
C
LYS
134
C
LYS
124
C
GLY
19
C
GLY
9
C
SER
22
C
SER
12
D
GLY
19
D
GLY
9
D
SER
22
D
SER
12
D
THR
28
D
THR
18
D
GLY
34
D
GLY
24
D
ALA
38
D
ALA
28
D
GLU
44
D
GLU
34
D
TYR
54
D
TYR
44
D
TYR
60
D
TYR
50
D
THR
71
D
THR
61
D
LYS
80
D
LYS
70
D
ASN
85
D
ASN
75
D
VAL
97
D
VAL
87
D
LYS
103
D
LYS
93
D
SER
112
D
SER
102
D
THR
123
D
THR
113
D
VAL
133
D
VAL
123
D
GLY
19
D
GLY
9
D
SER
22
D
SER
12
BINDING SITE FOR RESIDUE ZOE A 201
A
ZOE
201
Software
15
BINDING SITE FOR RESIDUE GOL A 202
A
GOL
202
Software
6
BINDING SITE FOR RESIDUE CD A 203
A
CD
203
Software
4
BINDING SITE FOR RESIDUE CD A 204
A
CD
204
Software
3
BINDING SITE FOR RESIDUE CD A 205
A
CD
205
Software
2
BINDING SITE FOR RESIDUE P6G A 206
A
P6G
206
Software
9
BINDING SITE FOR RESIDUE ZOE B 201
B
ZOE
201
Software
14
BINDING SITE FOR RESIDUE CD B 202
B
CD
202
Software
4
BINDING SITE FOR RESIDUE ZOE C 201
C
ZOE
201
Software
13
BINDING SITE FOR RESIDUE GOL C 202
C
GOL
202
Software
7
BINDING SITE FOR RESIDUE CD C 203
C
CD
203
Software
4
BINDING SITE FOR RESIDUE ZOE D 201
D
ZOE
201
Software
14
BINDING SITE FOR RESIDUE GOL D 202
D
GOL
202
Software
5
BINDING SITE FOR RESIDUE CD D 203
D
CD
203
Software
5
BINDING SITE FOR RESIDUE CD D 204
D
CD
204
Software
3
BINDING SITE FOR RESIDUE CD D 205
D
CD
205
Software
2
BINDING SITE FOR RESIDUE CD D 206
D
CD
206
Software
4
BINDING SITE FOR RESIDUE P6G D 207
D
P6G
207
Software
7
A
ASP
27
A
ASP
17
15
1_555
A
TYR
43
A
TYR
33
15
1_555
A
SER
45
A
SER
35
15
1_555
A
VAL
47
A
VAL
37
15
1_555
A
GLY
48
A
GLY
38
15
1_555
A
ASN
49
A
ASN
39
15
1_555
A
TRP
79
A
TRP
69
15
1_555
A
SER
88
A
SER
78
15
1_555
A
THR
90
A
THR
80
15
1_555
A
TRP
108
A
TRP
98
15
1_555
A
LEU
110
A
LEU
100
15
1_555
A
ASP
128
A
ASP
118
15
1_555
C
CD
203
O
CD
15
2_454
C
HOH
331
Y
HOH
15
2_454
D
LYS
121
D
LYS
111
15
1_555
A
GLU
14
A
GLU
4
6
1_555
A
ALA
35
A
ALA
25
6
1_555
A
ASP
36
A
ASP
26
6
1_555
A
TYR
60
A
TYR
50
6
1_555
A
HOH
322
W
HOH
6
1_555
C
ARG
53
C
ARG
43
6
1_655
A
ASP
101
A
ASP
91
4
1_555
A
HOH
333
W
HOH
4
1_555
A
HOH
334
W
HOH
4
1_555
C
GLU
44
C
GLU
34
4
4_545
A
GLU
14
A
GLU
4
3
1_555
A
SER
62
A
SER
52
3
1_555
A
HOH
337
W
HOH
3
1_555
A
GLU
44
A
GLU
34
2
1_555
A
HOH
356
W
HOH
2
1_555
A
SER
69
A
SER
59
9
1_555
A
GLY
70
A
GLY
60
9
1_555
A
THR
71
A
THR
61
9
1_555
A
TYR
96
A
TYR
86
9
1_555
A
GLY
98
A
GLY
88
9
1_555
A
GLY
99
A
GLY
89
9
1_555
A
ALA
100
A
ALA
90
9
1_555
C
ASP
23
C
ASP
13
9
4_545
C
GLY
26
C
GLY
16
9
4_545
B
ASP
27
B
ASP
17
14
1_555
B
TYR
43
B
TYR
33
14
1_555
B
SER
45
B
SER
35
14
1_555
B
VAL
47
B
VAL
37
14
1_555
B
ASN
49
B
ASN
39
14
1_555
B
TRP
79
B
TRP
69
14
1_555
B
SER
88
B
SER
78
14
1_555
B
THR
90
B
THR
80
14
1_555
B
TRP
108
B
TRP
98
14
1_555
B
LEU
110
B
LEU
100
14
1_555
B
ASP
128
B
ASP
118
14
1_555
C
TRP
120
C
TRP
110
14
1_555
D
CD
203
R
CD
14
2_455
D
HOH
353
Z
HOH
14
2_455
B
GLU
14
B
GLU
4
4
1_555
B
SER
62
B
SER
52
4
1_555
B
HOH
325
X
HOH
4
1_555
B
HOH
331
X
HOH
4
1_555
B
TRP
120
B
TRP
110
13
1_555
B
LYS
121
B
LYS
111
13
1_555
C
ASP
27
C
ASP
17
13
1_555
C
TYR
43
C
TYR
33
13
1_555
C
SER
45
C
SER
35
13
1_555
C
VAL
47
C
VAL
37
13
1_555
C
ASN
49
C
ASN
39
13
1_555
C
TRP
79
C
TRP
69
13
1_555
C
SER
88
C
SER
78
13
1_555
C
THR
90
C
THR
80
13
1_555
C
TRP
108
C
TRP
98
13
1_555
C
LEU
110
C
LEU
100
13
1_555
C
ASP
128
C
ASP
118
13
1_555
A
THR
32
A
THR
22
7
1_455
A
ALA
35
A
ALA
25
7
1_455
A
THR
40
A
THR
30
7
1_455
A
HOH
362
W
HOH
7
1_455
C
ILE
30
C
ILE
20
7
1_555
C
GLY
41
C
GLY
31
7
1_555
C
THR
42
C
THR
32
7
1_555
A
ZOE
201
E
ZOE
4
2_455
C
HIS
87
C
HIS
77
4
1_555
C
HOH
331
Y
HOH
4
1_555
D
HOH
332
Z
HOH
4
1_555
A
TRP
120
A
TRP
110
14
1_555
D
ASP
27
D
ASP
17
14
1_555
D
TYR
43
D
TYR
33
14
1_555
D
SER
45
D
SER
35
14
1_555
D
VAL
47
D
VAL
37
14
1_555
D
GLY
48
D
GLY
38
14
1_555
D
ASN
49
D
ASN
39
14
1_555
D
TRP
79
D
TRP
69
14
1_555
D
SER
88
D
SER
78
14
1_555
D
THR
90
D
THR
80
14
1_555
D
TRP
108
D
TRP
98
14
1_555
D
LEU
110
D
LEU
100
14
1_555
D
SER
112
D
SER
102
14
1_555
D
ASP
128
D
ASP
118
14
1_555
D
GLU
14
D
GLU
4
5
1_555
D
GLY
34
D
GLY
24
5
1_555
D
ALA
35
D
ALA
25
5
1_555
D
ASP
36
D
ASP
26
5
1_555
D
TYR
60
D
TYR
50
5
1_555
B
ZOE
201
K
ZOE
5
2_454
D
HIS
87
D
HIS
77
5
1_555
D
HOH
326
Z
HOH
5
1_555
D
HOH
343
Z
HOH
5
1_555
D
HOH
353
Z
HOH
5
1_555
D
GLU
14
D
GLU
4
3
1_555
D
SER
62
D
SER
52
3
1_555
D
HOH
327
Z
HOH
3
1_555
A
ASP
67
A
ASP
57
2
2_454
D
GLU
44
D
GLU
34
2
1_555
B
GLU
44
B
GLU
34
4
4_455
D
ASP
101
D
ASP
91
4
1_555
D
HOH
335
Z
HOH
4
1_555
D
HOH
344
Z
HOH
4
1_555
B
SER
22
B
SER
12
7
4_455
B
ASP
23
B
ASP
13
7
4_455
B
GLY
26
B
GLY
16
7
4_455
D
THR
71
D
THR
61
7
1_555
D
TYR
96
D
TYR
86
7
1_555
D
GLY
98
D
GLY
88
7
1_555
D
GLY
99
D
GLY
89
7
1_555
19
P 21 21 21