0.014113
0.008148
0.000000
0.000000
0.016297
0.000000
0.000000
0.000000
0.014896
0.00000
0.00000
0.00000
Peat, T.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
70.855
70.855
67.132
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C28 H28 N2 O6
488.532
5-[[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl-prop-2-enyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
S
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
N
N
340
N
N
N
341
N
O
N
342
N
O
N
343
N
O
N
344
N
O
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
S
N
390
N
O
N
391
N
O
N
392
N
O
N
393
N
O
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
R
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
N
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
N
449
N
O
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
N
467
N
C
N
468
N
C
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
Y
159
N
sing
Y
160
N
doub
Y
161
N
doub
N
162
N
sing
Y
163
N
sing
N
164
N
sing
Y
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
sing
Y
297
N
doub
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
Y
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
doub
Y
305
N
doub
Y
306
N
sing
Y
307
N
doub
Y
308
N
doub
Y
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
US
Plos One
1932-6203
7
40147
10.1371/JOURNAL.PONE.0040147
22808106
Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design.
2012
10.2210/pdb3zcm/pdb
pdb_00003zcm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2009-08-22
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9537
1.0
MX1
Australian Synchrotron
0.9537
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
18395.842
HIV INTEGRASE
2.7.7.-
CORE CATALYTIC DOMAIN, RESIDUES 56-212
YES
2
man
polymer
96.063
SULFATE ION
6
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
488.532
5-[[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl-prop-2-enyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid
2
syn
non-polymer
59.044
ACETATE ION
2
syn
non-polymer
18.015
water
151
nat
water
no
no
MGSSHHHHHHSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTT
VKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIA
TDIQTKE
MGSSHHHHHHSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTT
VKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIA
TDIQTKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
RECOMBINANT
12721
HUMAN IMMUNODEFICIENCY VIRUS
511693
ESCHERICHIA COLI
BL21
PET
PLASMID
1
2.96
58.5
NONE
5.5
THE PROTEIN WAS CONCENTRATED TO 5.5 MG/ML IN 40 MM TRIS PH 8.0, 250 MM NACL, 30 MM MGCL2, 5 MM DTT AND SET UP IN A 1:1 RATIO WITH 1.6 TO 2.0 M AMMONIUM SULFATE, 100 MM SODIUM ACETATE BUFFER PH 5.0 TO 5.5.
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2012-12-05
1
1
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2012-11-21
REL
REL
SO4
SULFATE ION
GOL
GLYCEROL
PX3
5-[[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl-prop-2-enyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid
ACT
ACETATE ION
HOH
water
3 MUTATIONS MADE FOR SOLUBILITY
3ZT3
PDB ENTRY 3ZT3
PDB
experimental model
SO4
1210
2
SO4
SO4
1210
A
SO4
1211
2
SO4
SO4
1211
A
SO4
1212
2
SO4
SO4
1212
A
GOL
1213
3
GOL
GOL
1213
A
PX3
1214
4
PX3
PX3
1214
A
SO4
1210
2
SO4
SO4
1210
B
SO4
1211
2
SO4
SO4
1211
B
SO4
1212
2
SO4
SO4
1212
B
ACT
1213
5
ACT
ACT
1213
B
ACT
1214
5
ACT
ACT
1214
B
GOL
1215
3
GOL
GOL
1215
B
PX3
1216
4
PX3
PX3
1216
B
HOH
2001
6
HOH
HOH
2001
A
HOH
2002
6
HOH
HOH
2002
A
HOH
2003
6
HOH
HOH
2003
A
HOH
2004
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2007
6
HOH
HOH
2007
A
HOH
2008
6
HOH
HOH
2008
A
HOH
2009
6
HOH
HOH
2009
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2021
6
HOH
HOH
2021
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2024
6
HOH
HOH
2024
A
HOH
2025
6
HOH
HOH
2025
A
HOH
2026
6
HOH
HOH
2026
A
HOH
2027
6
HOH
HOH
2027
A
HOH
2028
6
HOH
HOH
2028
A
HOH
2029
6
HOH
HOH
2029
A
HOH
2030
6
HOH
HOH
2030
A
HOH
2031
6
HOH
HOH
2031
A
HOH
2032
6
HOH
HOH
2032
A
HOH
2033
6
HOH
HOH
2033
A
HOH
2034
6
HOH
HOH
2034
A
HOH
2035
6
HOH
HOH
2035
A
HOH
2036
6
HOH
HOH
2036
A
HOH
2037
6
HOH
HOH
2037
A
HOH
2038
6
HOH
HOH
2038
A
HOH
2039
6
HOH
HOH
2039
A
HOH
2040
6
HOH
HOH
2040
A
HOH
2041
6
HOH
HOH
2041
A
HOH
2042
6
HOH
HOH
2042
A
HOH
2043
6
HOH
HOH
2043
A
HOH
2044
6
HOH
HOH
2044
A
HOH
2045
6
HOH
HOH
2045
A
HOH
2046
6
HOH
HOH
2046
A
HOH
2047
6
HOH
HOH
2047
A
HOH
2048
6
HOH
HOH
2048
A
HOH
2049
6
HOH
HOH
2049
A
HOH
2050
6
HOH
HOH
2050
A
HOH
2051
6
HOH
HOH
2051
A
HOH
2052
6
HOH
HOH
2052
A
HOH
2053
6
HOH
HOH
2053
A
HOH
2054
6
HOH
HOH
2054
A
HOH
2055
6
HOH
HOH
2055
A
HOH
2056
6
HOH
HOH
2056
A
HOH
2057
6
HOH
HOH
2057
A
HOH
2058
6
HOH
HOH
2058
A
HOH
2059
6
HOH
HOH
2059
A
HOH
2060
6
HOH
HOH
2060
A
HOH
2061
6
HOH
HOH
2061
A
HOH
2062
6
HOH
HOH
2062
A
HOH
2063
6
HOH
HOH
2063
A
HOH
2064
6
HOH
HOH
2064
A
HOH
2065
6
HOH
HOH
2065
A
HOH
2066
6
HOH
HOH
2066
A
HOH
2067
6
HOH
HOH
2067
A
HOH
2068
6
HOH
HOH
2068
A
HOH
2069
6
HOH
HOH
2069
A
HOH
2070
6
HOH
HOH
2070
A
HOH
2071
6
HOH
HOH
2071
A
HOH
2072
6
HOH
HOH
2072
A
HOH
2073
6
HOH
HOH
2073
A
HOH
2074
6
HOH
HOH
2074
A
HOH
2075
6
HOH
HOH
2075
A
HOH
2076
6
HOH
HOH
2076
A
HOH
2077
6
HOH
HOH
2077
A
HOH
2078
6
HOH
HOH
2078
A
HOH
2079
6
HOH
HOH
2079
A
HOH
2080
6
HOH
HOH
2080
A
HOH
2081
6
HOH
HOH
2081
A
HOH
2082
6
HOH
HOH
2082
A
HOH
2083
6
HOH
HOH
2083
A
HOH
2084
6
HOH
HOH
2084
A
HOH
2085
6
HOH
HOH
2085
A
HOH
2001
6
HOH
HOH
2001
B
HOH
2002
6
HOH
HOH
2002
B
HOH
2003
6
HOH
HOH
2003
B
HOH
2004
6
HOH
HOH
2004
B
HOH
2005
6
HOH
HOH
2005
B
HOH
2006
6
HOH
HOH
2006
B
HOH
2007
6
HOH
HOH
2007
B
HOH
2008
6
HOH
HOH
2008
B
HOH
2009
6
HOH
HOH
2009
B
HOH
2010
6
HOH
HOH
2010
B
HOH
2011
6
HOH
HOH
2011
B
HOH
2012
6
HOH
HOH
2012
B
HOH
2013
6
HOH
HOH
2013
B
HOH
2014
6
HOH
HOH
2014
B
HOH
2015
6
HOH
HOH
2015
B
HOH
2016
6
HOH
HOH
2016
B
HOH
2017
6
HOH
HOH
2017
B
HOH
2018
6
HOH
HOH
2018
B
HOH
2019
6
HOH
HOH
2019
B
HOH
2020
6
HOH
HOH
2020
B
HOH
2021
6
HOH
HOH
2021
B
HOH
2022
6
HOH
HOH
2022
B
HOH
2023
6
HOH
HOH
2023
B
HOH
2024
6
HOH
HOH
2024
B
HOH
2025
6
HOH
HOH
2025
B
HOH
2026
6
HOH
HOH
2026
B
HOH
2027
6
HOH
HOH
2027
B
HOH
2028
6
HOH
HOH
2028
B
HOH
2029
6
HOH
HOH
2029
B
HOH
2030
6
HOH
HOH
2030
B
HOH
2031
6
HOH
HOH
2031
B
HOH
2032
6
HOH
HOH
2032
B
HOH
2033
6
HOH
HOH
2033
B
HOH
2034
6
HOH
HOH
2034
B
HOH
2035
6
HOH
HOH
2035
B
HOH
2036
6
HOH
HOH
2036
B
HOH
2037
6
HOH
HOH
2037
B
HOH
2038
6
HOH
HOH
2038
B
HOH
2039
6
HOH
HOH
2039
B
HOH
2040
6
HOH
HOH
2040
B
HOH
2041
6
HOH
HOH
2041
B
HOH
2042
6
HOH
HOH
2042
B
HOH
2043
6
HOH
HOH
2043
B
HOH
2044
6
HOH
HOH
2044
B
HOH
2045
6
HOH
HOH
2045
B
HOH
2046
6
HOH
HOH
2046
B
HOH
2047
6
HOH
HOH
2047
B
HOH
2048
6
HOH
HOH
2048
B
HOH
2049
6
HOH
HOH
2049
B
HOH
2050
6
HOH
HOH
2050
B
HOH
2051
6
HOH
HOH
2051
B
HOH
2052
6
HOH
HOH
2052
B
HOH
2053
6
HOH
HOH
2053
B
HOH
2054
6
HOH
HOH
2054
B
HOH
2055
6
HOH
HOH
2055
B
HOH
2056
6
HOH
HOH
2056
B
HOH
2057
6
HOH
HOH
2057
B
HOH
2058
6
HOH
HOH
2058
B
HOH
2059
6
HOH
HOH
2059
B
HOH
2060
6
HOH
HOH
2060
B
HOH
2061
6
HOH
HOH
2061
B
HOH
2062
6
HOH
HOH
2062
B
HOH
2063
6
HOH
HOH
2063
B
HOH
2064
6
HOH
HOH
2064
B
HOH
2065
6
HOH
HOH
2065
B
HOH
2066
6
HOH
HOH
2066
B
n
1
46
A
n
2
47
A
n
3
48
A
n
4
49
A
n
5
50
A
n
6
51
A
n
7
52
A
n
8
53
A
n
9
54
A
n
10
55
A
n
11
56
A
SER
57
n
12
SER
57
A
PRO
58
n
13
PRO
58
A
GLY
59
n
14
GLY
59
A
ILE
60
n
15
ILE
60
A
TRP
61
n
16
TRP
61
A
GLN
62
n
17
GLN
62
A
LEU
63
n
18
LEU
63
A
ASP
64
n
19
ASP
64
A
CYS
65
n
20
CYS
65
A
THR
66
n
21
THR
66
A
HIS
67
n
22
HIS
67
A
LEU
68
n
23
LEU
68
A
GLU
69
n
24
GLU
69
A
GLY
70
n
25
GLY
70
A
LYS
71
n
26
LYS
71
A
VAL
72
n
27
VAL
72
A
ILE
73
n
28
ILE
73
A
LEU
74
n
29
LEU
74
A
VAL
75
n
30
VAL
75
A
ALA
76
n
31
ALA
76
A
VAL
77
n
32
VAL
77
A
HIS
78
n
33
HIS
78
A
VAL
79
n
34
VAL
79
A
ALA
80
n
35
ALA
80
A
SER
81
n
36
SER
81
A
GLY
82
n
37
GLY
82
A
TYR
83
n
38
TYR
83
A
ILE
84
n
39
ILE
84
A
GLU
85
n
40
GLU
85
A
ALA
86
n
41
ALA
86
A
GLU
87
n
42
GLU
87
A
VAL
88
n
43
VAL
88
A
ILE
89
n
44
ILE
89
A
PRO
90
n
45
PRO
90
A
ALA
91
n
46
ALA
91
A
GLU
92
n
47
GLU
92
A
THR
93
n
48
THR
93
A
GLY
94
n
49
GLY
94
A
GLN
95
n
50
GLN
95
A
GLU
96
n
51
GLU
96
A
THR
97
n
52
THR
97
A
ALA
98
n
53
ALA
98
A
TYR
99
n
54
TYR
99
A
PHE
100
n
55
PHE
100
A
LEU
101
n
56
LEU
101
A
LEU
102
n
57
LEU
102
A
LYS
103
n
58
LYS
103
A
LEU
104
n
59
LEU
104
A
ALA
105
n
60
ALA
105
A
GLY
106
n
61
GLY
106
A
ARG
107
n
62
ARG
107
A
TRP
108
n
63
TRP
108
A
PRO
109
n
64
PRO
109
A
VAL
110
n
65
VAL
110
A
LYS
111
n
66
LYS
111
A
THR
112
n
67
THR
112
A
VAL
113
n
68
VAL
113
A
HIS
114
n
69
HIS
114
A
THR
115
n
70
THR
115
A
ASP
116
n
71
ASP
116
A
ASN
117
n
72
ASN
117
A
GLY
118
n
73
GLY
118
A
SER
119
n
74
SER
119
A
ASN
120
n
75
ASN
120
A
PHE
121
n
76
PHE
121
A
THR
122
n
77
THR
122
A
SER
123
n
78
SER
123
A
THR
124
n
79
THR
124
A
THR
125
n
80
THR
125
A
VAL
126
n
81
VAL
126
A
LYS
127
n
82
LYS
127
A
ALA
128
n
83
ALA
128
A
ALA
129
n
84
ALA
129
A
CYS
130
n
85
CYS
130
A
TRP
131
n
86
TRP
131
A
TRP
132
n
87
TRP
132
A
ALA
133
n
88
ALA
133
A
GLY
134
n
89
GLY
134
A
ILE
135
n
90
ILE
135
A
LYS
136
n
91
LYS
136
A
GLN
137
n
92
GLN
137
A
GLU
138
n
93
GLU
138
A
ASP
139
n
94
ASP
139
A
GLY
140
n
95
GLY
140
A
ILE
141
n
96
ILE
141
A
PRO
142
n
97
PRO
142
A
TYR
143
n
98
TYR
143
A
ASN
144
n
99
ASN
144
A
PRO
145
n
100
PRO
145
A
GLN
146
n
101
GLN
146
A
SER
147
n
102
SER
147
A
GLN
148
n
103
GLN
148
A
GLY
149
n
104
GLY
149
A
VAL
150
n
105
VAL
150
A
ILE
151
n
106
ILE
151
A
GLU
152
n
107
GLU
152
A
SER
153
n
108
SER
153
A
MET
154
n
109
MET
154
A
ASN
155
n
110
ASN
155
A
LYS
156
n
111
LYS
156
A
GLU
157
n
112
GLU
157
A
LEU
158
n
113
LEU
158
A
LYS
159
n
114
LYS
159
A
LYS
160
n
115
LYS
160
A
ILE
161
n
116
ILE
161
A
ILE
162
n
117
ILE
162
A
GLY
163
n
118
GLY
163
A
GLN
164
n
119
GLN
164
A
VAL
165
n
120
VAL
165
A
ARG
166
n
121
ARG
166
A
ASP
167
n
122
ASP
167
A
GLN
168
n
123
GLN
168
A
ALA
169
n
124
ALA
169
A
GLU
170
n
125
GLU
170
A
HIS
171
n
126
HIS
171
A
LEU
172
n
127
LEU
172
A
LYS
173
n
128
LYS
173
A
THR
174
n
129
THR
174
A
ALA
175
n
130
ALA
175
A
VAL
176
n
131
VAL
176
A
GLN
177
n
132
GLN
177
A
MET
178
n
133
MET
178
A
ALA
179
n
134
ALA
179
A
VAL
180
n
135
VAL
180
A
PHE
181
n
136
PHE
181
A
ILE
182
n
137
ILE
182
A
HIS
183
n
138
HIS
183
A
ASN
184
n
139
ASN
184
A
HIS
185
n
140
HIS
185
A
LYS
186
n
141
LYS
186
A
ARG
187
n
142
ARG
187
A
LYS
188
n
143
LYS
188
A
n
144
189
A
n
145
190
A
n
146
191
A
n
147
192
A
GLY
193
n
148
GLY
193
A
TYR
194
n
149
TYR
194
A
SER
195
n
150
SER
195
A
ALA
196
n
151
ALA
196
A
GLY
197
n
152
GLY
197
A
GLU
198
n
153
GLU
198
A
ARG
199
n
154
ARG
199
A
ILE
200
n
155
ILE
200
A
VAL
201
n
156
VAL
201
A
ASP
202
n
157
ASP
202
A
ILE
203
n
158
ILE
203
A
ILE
204
n
159
ILE
204
A
ALA
205
n
160
ALA
205
A
THR
206
n
161
THR
206
A
ASP
207
n
162
ASP
207
A
ILE
208
n
163
ILE
208
A
GLN
209
n
164
GLN
209
A
n
165
210
A
n
166
211
A
n
167
212
A
n
1
46
B
n
2
47
B
n
3
48
B
n
4
49
B
n
5
50
B
n
6
51
B
n
7
52
B
n
8
53
B
n
9
54
B
n
10
55
B
n
11
56
B
SER
57
n
12
SER
57
B
PRO
58
n
13
PRO
58
B
GLY
59
n
14
GLY
59
B
ILE
60
n
15
ILE
60
B
TRP
61
n
16
TRP
61
B
GLN
62
n
17
GLN
62
B
LEU
63
n
18
LEU
63
B
ASP
64
n
19
ASP
64
B
CYS
65
n
20
CYS
65
B
THR
66
n
21
THR
66
B
HIS
67
n
22
HIS
67
B
LEU
68
n
23
LEU
68
B
GLU
69
n
24
GLU
69
B
GLY
70
n
25
GLY
70
B
LYS
71
n
26
LYS
71
B
VAL
72
n
27
VAL
72
B
ILE
73
n
28
ILE
73
B
LEU
74
n
29
LEU
74
B
VAL
75
n
30
VAL
75
B
ALA
76
n
31
ALA
76
B
VAL
77
n
32
VAL
77
B
HIS
78
n
33
HIS
78
B
VAL
79
n
34
VAL
79
B
ALA
80
n
35
ALA
80
B
SER
81
n
36
SER
81
B
GLY
82
n
37
GLY
82
B
TYR
83
n
38
TYR
83
B
ILE
84
n
39
ILE
84
B
GLU
85
n
40
GLU
85
B
ALA
86
n
41
ALA
86
B
GLU
87
n
42
GLU
87
B
VAL
88
n
43
VAL
88
B
ILE
89
n
44
ILE
89
B
PRO
90
n
45
PRO
90
B
ALA
91
n
46
ALA
91
B
GLU
92
n
47
GLU
92
B
THR
93
n
48
THR
93
B
GLY
94
n
49
GLY
94
B
GLN
95
n
50
GLN
95
B
GLU
96
n
51
GLU
96
B
THR
97
n
52
THR
97
B
ALA
98
n
53
ALA
98
B
TYR
99
n
54
TYR
99
B
PHE
100
n
55
PHE
100
B
LEU
101
n
56
LEU
101
B
LEU
102
n
57
LEU
102
B
LYS
103
n
58
LYS
103
B
LEU
104
n
59
LEU
104
B
ALA
105
n
60
ALA
105
B
GLY
106
n
61
GLY
106
B
ARG
107
n
62
ARG
107
B
TRP
108
n
63
TRP
108
B
PRO
109
n
64
PRO
109
B
VAL
110
n
65
VAL
110
B
LYS
111
n
66
LYS
111
B
THR
112
n
67
THR
112
B
VAL
113
n
68
VAL
113
B
HIS
114
n
69
HIS
114
B
THR
115
n
70
THR
115
B
ASP
116
n
71
ASP
116
B
ASN
117
n
72
ASN
117
B
GLY
118
n
73
GLY
118
B
SER
119
n
74
SER
119
B
ASN
120
n
75
ASN
120
B
PHE
121
n
76
PHE
121
B
THR
122
n
77
THR
122
B
SER
123
n
78
SER
123
B
THR
124
n
79
THR
124
B
THR
125
n
80
THR
125
B
VAL
126
n
81
VAL
126
B
LYS
127
n
82
LYS
127
B
ALA
128
n
83
ALA
128
B
ALA
129
n
84
ALA
129
B
CYS
130
n
85
CYS
130
B
TRP
131
n
86
TRP
131
B
TRP
132
n
87
TRP
132
B
ALA
133
n
88
ALA
133
B
GLY
134
n
89
GLY
134
B
ILE
135
n
90
ILE
135
B
LYS
136
n
91
LYS
136
B
GLN
137
n
92
GLN
137
B
GLU
138
n
93
GLU
138
B
ASP
139
n
94
ASP
139
B
GLY
140
n
95
GLY
140
B
ILE
141
n
96
ILE
141
B
PRO
142
n
97
PRO
142
B
TYR
143
n
98
TYR
143
B
ASN
144
n
99
ASN
144
B
PRO
145
n
100
PRO
145
B
GLN
146
n
101
GLN
146
B
SER
147
n
102
SER
147
B
GLN
148
n
103
GLN
148
B
GLY
149
n
104
GLY
149
B
VAL
150
n
105
VAL
150
B
ILE
151
n
106
ILE
151
B
GLU
152
n
107
GLU
152
B
SER
153
n
108
SER
153
B
MET
154
n
109
MET
154
B
ASN
155
n
110
ASN
155
B
LYS
156
n
111
LYS
156
B
GLU
157
n
112
GLU
157
B
LEU
158
n
113
LEU
158
B
LYS
159
n
114
LYS
159
B
LYS
160
n
115
LYS
160
B
ILE
161
n
116
ILE
161
B
ILE
162
n
117
ILE
162
B
GLY
163
n
118
GLY
163
B
GLN
164
n
119
GLN
164
B
VAL
165
n
120
VAL
165
B
ARG
166
n
121
ARG
166
B
ASP
167
n
122
ASP
167
B
GLN
168
n
123
GLN
168
B
ALA
169
n
124
ALA
169
B
GLU
170
n
125
GLU
170
B
HIS
171
n
126
HIS
171
B
LEU
172
n
127
LEU
172
B
LYS
173
n
128
LYS
173
B
THR
174
n
129
THR
174
B
ALA
175
n
130
ALA
175
B
VAL
176
n
131
VAL
176
B
GLN
177
n
132
GLN
177
B
MET
178
n
133
MET
178
B
ALA
179
n
134
ALA
179
B
VAL
180
n
135
VAL
180
B
PHE
181
n
136
PHE
181
B
ILE
182
n
137
ILE
182
B
HIS
183
n
138
HIS
183
B
ASN
184
n
139
ASN
184
B
HIS
185
n
140
HIS
185
B
LYS
186
n
141
LYS
186
B
ARG
187
n
142
ARG
187
B
LYS
188
n
143
LYS
188
B
n
144
189
B
n
145
190
B
n
146
191
B
n
147
192
B
GLY
193
n
148
GLY
193
B
TYR
194
n
149
TYR
194
B
SER
195
n
150
SER
195
B
ALA
196
n
151
ALA
196
B
GLY
197
n
152
GLY
197
B
GLU
198
n
153
GLU
198
B
ARG
199
n
154
ARG
199
B
ILE
200
n
155
ILE
200
B
VAL
201
n
156
VAL
201
B
ASP
202
n
157
ASP
202
B
ILE
203
n
158
ILE
203
B
ILE
204
n
159
ILE
204
B
ALA
205
n
160
ALA
205
B
THR
206
n
161
THR
206
B
ASP
207
n
162
ASP
207
B
ILE
208
n
163
ILE
208
B
GLN
209
n
164
GLN
209
B
n
165
210
B
n
166
211
B
n
167
212
B
author_and_software_defined_assembly
PISA
2
dimeric
5750
-108.5
13590
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
89
A
N
ILE
44
A
O
VAL
72
A
O
VAL
27
A
N
VAL
77
A
N
VAL
32
A
O
GLN
62
A
O
GLN
17
A
N
TRP
61
A
N
TRP
16
A
O
THR
112
A
O
THR
67
A
N
VAL
113
A
N
VAL
68
A
O
LYS
136
A
O
LYS
91
B
N
ILE
89
B
N
ILE
44
B
O
VAL
72
B
O
VAL
27
B
N
VAL
77
B
N
VAL
32
B
O
GLN
62
B
O
GLN
17
B
N
TRP
61
B
N
TRP
16
B
O
THR
112
B
O
THR
67
B
N
VAL
113
B
N
VAL
68
B
O
LYS
136
B
O
LYS
91
1
A
MET
46
A
MET
1
1
Y
1
A
GLY
47
A
GLY
2
1
Y
1
A
SER
48
A
SER
3
1
Y
1
A
SER
49
A
SER
4
1
Y
1
A
HIS
50
A
HIS
5
1
Y
1
A
HIS
51
A
HIS
6
1
Y
1
A
HIS
52
A
HIS
7
1
Y
1
A
HIS
53
A
HIS
8
1
Y
1
A
HIS
54
A
HIS
9
1
Y
1
A
HIS
55
A
HIS
10
1
Y
1
A
SER
56
A
SER
11
1
Y
1
A
GLY
189
A
GLY
144
1
Y
1
A
GLY
190
A
GLY
145
1
Y
1
A
ILE
191
A
ILE
146
1
Y
1
A
GLY
192
A
GLY
147
1
Y
1
A
THR
210
A
THR
165
1
Y
1
A
LYS
211
A
LYS
166
1
Y
1
A
GLU
212
A
GLU
167
1
Y
1
B
MET
46
B
MET
1
1
Y
1
B
GLY
47
B
GLY
2
1
Y
1
B
SER
48
B
SER
3
1
Y
1
B
SER
49
B
SER
4
1
Y
1
B
HIS
50
B
HIS
5
1
Y
1
B
HIS
51
B
HIS
6
1
Y
1
B
HIS
52
B
HIS
7
1
Y
1
B
HIS
53
B
HIS
8
1
Y
1
B
HIS
54
B
HIS
9
1
Y
1
B
HIS
55
B
HIS
10
1
Y
1
B
SER
56
B
SER
11
1
Y
1
B
GLY
189
B
GLY
144
1
Y
1
B
GLY
190
B
GLY
145
1
Y
1
B
ILE
191
B
ILE
146
1
Y
1
B
GLY
192
B
GLY
147
1
Y
1
B
THR
210
B
THR
165
1
Y
1
B
LYS
211
B
LYS
166
1
Y
1
B
GLU
212
B
GLU
167
1
Y
1
A
A
O1
O
GOL
HOH
1213
2027
1.78
1
B
B
O3
O
GOL
HOH
1215
2023
1.85
1
A
B
OE1
O
GLU
ACT
87
1213
2.02
B
1
B
B
OE1
O
GLU
ACT
87
1214
2.11
B
1
A
A
N
CA
GLY
GLY
59
59
0.091
0.015
1.456
1.547
N
1
A
A
CE2
CD2
TRP
TRP
131
131
0.090
0.012
1.409
1.499
N
1
B
B
CE2
CD2
TRP
TRP
61
61
0.076
0.012
1.409
1.485
N
1
B
B
CE2
CD2
TRP
TRP
131
131
0.077
0.012
1.409
1.486
N
1
B
B
CG
CD2
HIS
HIS
183
183
0.065
0.009
1.354
1.419
N
21.239
0.18
0.09
0.00
0.18
0.00
-0.26
0.961
0.938
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.20441
0.16366
0.16572
1.80
31.33
1758
33184
5.0
99.99
1.999
0.064
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.104
0.107
0.80
0.80
1.20
PDB ENTRY 3ZT3
MAXIMUM LIKELIHOOD
MASK
1.80
31.33
151
2591
122
0
2318
0.026
0.020
2607
2.339
1.984
3563
5.764
5.000
332
32.173
25.283
106
14.608
15.000
453
14.537
15.000
8
0.178
0.200
402
0.014
0.021
2014
0.289
0.224
1.847
130
2457
20
100.00
1.80
45.30
3ZCM
34979
1.0
0.06
1
18.30
5.7
100.0
0.42
1.80
1.90
4.00
1
5.7
100.0
refinement
REFMAC
5.6.0117
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
Small molecule inhibitors of the LEDGF site of HIV integrase identified by fragment screening and structure based design.
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
2
N
N
2
N
N
2
N
N
5
N
N
5
N
N
3
N
N
4
N
N
6
N
N
6
N
N
A
THR
93
A
THR
48
HELX_P
A
TRP
108
A
TRP
63
1
1
16
A
ASN
117
A
ASN
72
HELX_P
A
SER
123
A
SER
78
1
2
7
A
SER
123
A
SER
78
HELX_P
A
GLY
134
A
GLY
89
1
3
12
A
PRO
145
A
PRO
100
HELX_P
A
ARG
166
A
ARG
121
1
4
22
A
ASP
167
A
ASP
122
HELX_P
A
ALA
169
A
ALA
124
5
5
3
A
HIS
171
A
HIS
126
HELX_P
A
LYS
186
A
LYS
141
1
6
16
A
SER
195
A
SER
150
HELX_P
A
GLN
209
A
GLN
164
1
7
15
B
THR
93
B
THR
48
HELX_P
B
TRP
108
B
TRP
63
1
8
16
B
ASN
117
B
ASN
72
HELX_P
B
SER
123
B
SER
78
1
9
7
B
SER
123
B
SER
78
HELX_P
B
GLY
134
B
GLY
89
1
10
12
B
PRO
145
B
PRO
100
HELX_P
B
ARG
166
B
ARG
121
1
11
22
B
ASP
167
B
ASP
122
HELX_P
B
ALA
169
B
ALA
124
5
12
3
B
HIS
171
B
HIS
126
HELX_P
B
LYS
186
B
LYS
141
1
13
16
B
SER
195
B
SER
150
HELX_P
B
GLN
209
B
GLN
164
1
14
15
TRANSFERASE
TRANSFERASE
Q76353_9HIV1
UNP
1
Q76353
56
212
3ZCM
56
212
Q76353
A
1
11
167
56
212
3ZCM
56
212
Q76353
B
1
11
167
1
expression tag
MET
46
3ZCM
A
Q76353
UNP
1
1
expression tag
GLY
47
3ZCM
A
Q76353
UNP
2
1
expression tag
SER
48
3ZCM
A
Q76353
UNP
3
1
expression tag
SER
49
3ZCM
A
Q76353
UNP
4
1
expression tag
HIS
50
3ZCM
A
Q76353
UNP
5
1
expression tag
HIS
51
3ZCM
A
Q76353
UNP
6
1
expression tag
HIS
52
3ZCM
A
Q76353
UNP
7
1
expression tag
HIS
53
3ZCM
A
Q76353
UNP
8
1
expression tag
HIS
54
3ZCM
A
Q76353
UNP
9
1
expression tag
HIS
55
3ZCM
A
Q76353
UNP
10
1
CYS
engineered mutation
SER
56
3ZCM
A
Q76353
UNP
56
11
1
PHE
engineered mutation
ASP
139
3ZCM
A
Q76353
UNP
139
94
1
PHE
engineered mutation
HIS
185
3ZCM
A
Q76353
UNP
185
140
2
expression tag
MET
46
3ZCM
B
Q76353
UNP
1
2
expression tag
GLY
47
3ZCM
B
Q76353
UNP
2
2
expression tag
SER
48
3ZCM
B
Q76353
UNP
3
2
expression tag
SER
49
3ZCM
B
Q76353
UNP
4
2
expression tag
HIS
50
3ZCM
B
Q76353
UNP
5
2
expression tag
HIS
51
3ZCM
B
Q76353
UNP
6
2
expression tag
HIS
52
3ZCM
B
Q76353
UNP
7
2
expression tag
HIS
53
3ZCM
B
Q76353
UNP
8
2
expression tag
HIS
54
3ZCM
B
Q76353
UNP
9
2
expression tag
HIS
55
3ZCM
B
Q76353
UNP
10
2
CYS
engineered mutation
SER
56
3ZCM
B
Q76353
UNP
56
11
2
PHE
engineered mutation
ASP
139
3ZCM
B
Q76353
UNP
139
94
2
PHE
engineered mutation
HIS
185
3ZCM
B
Q76353
UNP
185
140
5
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
84
A
ILE
39
A
ILE
89
A
ILE
44
A
LYS
71
A
LYS
26
A
HIS
78
A
HIS
33
A
ILE
60
A
ILE
15
A
LEU
68
A
LEU
23
A
THR
112
A
THR
67
A
HIS
114
A
HIS
69
A
LYS
136
A
LYS
91
A
GLU
138
A
GLU
93
B
ILE
84
B
ILE
39
B
ILE
89
B
ILE
44
B
LYS
71
B
LYS
26
B
HIS
78
B
HIS
33
B
ILE
60
B
ILE
15
B
LEU
68
B
LEU
23
B
THR
112
B
THR
67
B
HIS
114
B
HIS
69
B
LYS
136
B
LYS
91
B
GLU
138
B
GLU
93
BINDING SITE FOR RESIDUE SO4 B 1210
B
SO4
1210
Software
8
BINDING SITE FOR RESIDUE SO4 A 1210
A
SO4
1210
Software
6
BINDING SITE FOR RESIDUE SO4 B 1211
B
SO4
1211
Software
5
BINDING SITE FOR RESIDUE SO4 A 1211
A
SO4
1211
Software
5
BINDING SITE FOR RESIDUE SO4 A 1212
A
SO4
1212
Software
8
BINDING SITE FOR RESIDUE SO4 B 1212
B
SO4
1212
Software
7
BINDING SITE FOR RESIDUE ACT B 1213
B
ACT
1213
Software
7
BINDING SITE FOR RESIDUE ACT B 1214
B
ACT
1214
Software
7
BINDING SITE FOR RESIDUE GOL B 1215
B
GOL
1215
Software
6
BINDING SITE FOR RESIDUE GOL A 1213
A
GOL
1213
Software
6
BINDING SITE FOR RESIDUE PX3 A 1214
A
PX3
1214
Software
13
BINDING SITE FOR RESIDUE PX3 B 1216
B
PX3
1216
Software
12
B
THR
66
B
THR
21
8
1_555
B
HIS
67
B
HIS
22
8
1_555
B
LYS
111
B
LYS
66
8
3_564
B
LYS
136
B
LYS
91
8
3_564
B
LYS
159
B
LYS
114
8
1_555
B
HOH
2006
P
HOH
8
1_555
B
HOH
2007
P
HOH
8
1_555
B
HOH
2045
P
HOH
8
1_555
A
THR
66
A
THR
21
6
1_555
A
HIS
67
A
HIS
22
6
1_555
A
LYS
111
A
LYS
66
6
2_565
A
LYS
136
A
LYS
91
6
2_565
A
LYS
159
A
LYS
114
6
1_555
A
HOH
2057
O
HOH
6
1_555
B
LYS
71
B
LYS
26
5
1_555
B
HIS
171
B
HIS
126
5
1_555
B
LEU
172
B
LEU
127
5
1_555
B
HOH
2010
P
HOH
5
1_555
B
HOH
2053
P
HOH
5
1_555
A
LYS
71
A
LYS
26
5
1_555
A
HIS
171
A
HIS
126
5
1_555
A
LEU
172
A
LEU
127
5
1_555
A
HOH
2008
O
HOH
5
1_555
A
HOH
2067
O
HOH
5
1_555
A
GLU
85
A
GLU
40
8
1_555
A
ALA
86
A
ALA
41
8
1_555
A
GLU
87
A
GLU
42
8
1_555
A
PHE
100
A
PHE
55
8
1_555
A
LYS
103
A
LYS
58
8
1_555
A
LEU
104
A
LEU
59
8
1_555
B
ARG
107
B
ARG
62
8
1_555
B
SO4
1212
J
SO4
8
1_555
A
ARG
107
A
ARG
62
7
1_555
A
SO4
1212
E
SO4
7
1_555
B
GLU
85
B
GLU
40
7
1_555
B
GLU
87
B
GLU
42
7
1_555
B
PHE
100
B
PHE
55
7
1_555
B
LYS
103
B
LYS
58
7
1_555
B
LEU
104
B
LEU
59
7
1_555
A
GLU
87
A
GLU
42
7
1_555
A
HOH
2016
O
HOH
7
1_555
A
HOH
2017
O
HOH
7
1_555
A
HOH
2070
O
HOH
7
1_555
B
TYR
99
B
TYR
54
7
1_555
B
LYS
103
B
LYS
58
7
1_555
B
ACT
1214
L
ACT
7
1_555
A
TYR
99
A
TYR
54
7
1_555
A
LYS
103
A
LYS
58
7
1_555
A
HOH
2034
O
HOH
7
1_555
B
GLU
87
B
GLU
42
7
1_555
B
ACT
1213
K
ACT
7
1_555
B
HOH
2015
P
HOH
7
1_555
B
HOH
2056
P
HOH
7
1_555
B
GLY
94
B
GLY
49
6
1_555
B
SER
123
B
SER
78
6
1_555
B
THR
124
B
THR
79
6
1_555
B
THR
125
B
THR
80
6
1_555
B
HOH
2023
P
HOH
6
1_555
B
HOH
2064
P
HOH
6
1_555
A
GLY
94
A
GLY
49
6
1_555
A
SER
123
A
SER
78
6
1_555
A
THR
124
A
THR
79
6
1_555
A
THR
125
A
THR
80
6
1_555
A
HOH
2027
O
HOH
6
1_555
A
HOH
2080
O
HOH
6
1_555
A
ASP
167
A
ASP
122
13
1_555
A
GLN
168
A
GLN
123
13
1_555
A
ALA
169
A
ALA
124
13
1_555
A
GLU
170
A
GLU
125
13
1_555
A
HIS
171
A
HIS
126
13
1_555
A
THR
174
A
THR
129
13
1_555
A
HOH
2083
O
HOH
13
1_555
B
GLN
95
B
GLN
50
13
1_555
B
ALA
98
B
ALA
53
13
1_555
B
TYR
99
B
TYR
54
13
1_555
B
THR
125
B
THR
80
13
1_555
B
ALA
128
B
ALA
83
13
1_555
B
ALA
129
B
ALA
84
13
1_555
A
GLN
95
A
GLN
50
12
1_555
A
ALA
98
A
ALA
53
12
1_555
A
TYR
99
A
TYR
54
12
1_555
A
ALA
128
A
ALA
83
12
1_555
A
ALA
129
A
ALA
84
12
1_555
B
ASP
167
B
ASP
122
12
1_555
B
GLN
168
B
GLN
123
12
1_555
B
ALA
169
B
ALA
124
12
1_555
B
GLU
170
B
GLU
125
12
1_555
B
HIS
171
B
HIS
126
12
1_555
B
THR
174
B
THR
129
12
1_555
B
MET
178
B
MET
133
12
1_555
144
P 31