0.020630
0.000000
0.000000
0.000000
0.012818
0.000000
0.000000
0.000000
0.004442
0.00000
0.00000
0.00000
Luo, D.
Pyle, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
48.474
78.017
225.104
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
R
C
N
85
N
O
N
86
R
C
N
87
N
N
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
C
N
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
R
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
S
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
O
N
124
N
P
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
C
N
129
R
C
N
130
N
O
N
131
S
C
N
132
N
O
N
133
R
C
N
134
N
O
N
135
R
C
Y
136
N
N
Y
137
N
C
Y
138
N
N
Y
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
C
N
144
N
N
N
145
N
N
Y
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
N
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
O
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
Y
215
N
C
Y
216
N
N
Y
217
N
C
Y
218
N
C
Y
219
N
N
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
S
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
N
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
S
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
O
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
R
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
N
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
Y
143
N
sing
Y
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
Y
149
N
doub
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
sing
Y
217
N
doub
Y
218
N
doub
N
219
N
sing
Y
220
N
sing
N
221
N
sing
Y
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
UK
Embo Rep.
1469-221X
14
772
10.1038/EMBOR.2013.108
23897087
Defining the Functional Determinants for RNA Surveillance by Rig-I.
2013
10.2210/pdb3zd6/pdb
pdb_00003zd6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
287
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
24-ID-C
APS
1
SYNCHROTRON
APS BEAMLINE 24-ID-C
79737.875
PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
3.6.4.13
1
nat
polymer
3206.980
RNA DUPLEX
2
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
9
nat
water
DEAD BOX PROTEIN 58, RIG-I-LIKE RECEPTOR 1, RLR-1, RETINOIC ACID-INDUCIBLE GENE 1 PROTEIN, RIG-1, RETINOIC ACID-INDUCIBLE GENE I PROTEIN, RIG-I
no
no
SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPNGQKGKVVFFANQIPVYEQNKSV
FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN
YLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD
KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN
DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI
TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILILTSVADEGIDIAQC
NLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF
IRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNC
SHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK
SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPNGQKGKVVFFANQIPVYEQNKSV
FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN
YLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD
KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN
DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI
TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILILTSVADEGIDIAQC
NLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF
IRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNC
SHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK
A
polypeptide(L)
no
no
GCGCGCGCGC
GCGCGCGCGC
C,D
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
1
2.36
53.6
NONE
9
pH 9
12.637
1
19
C
1
D
10
1.338
C_G1:C10_D
1
2.239
-0.284
0.710
-0.198
9.606
1
19
C
2
D
9
-5.699
C_C2:G9_D
2
-13.305
-0.240
-0.042
-0.181
3.438
1
19
C
3
D
8
-3.404
C_G3:C8_D
3
-15.592
0.033
0.108
-0.273
-1.462
1
19
C
4
D
7
0.748
C_C4:G7_D
4
-6.648
0.256
0.087
-0.082
-1.934
1
19
C
5
D
6
5.368
C_G5:C6_D
5
-5.038
-0.676
-0.153
-0.187
1.196
1
19
C
6
D
5
6.061
C_C6:G5_D
6
-4.253
0.029
0.180
-0.109
3.323
1
19
C
7
D
4
-0.356
C_G7:C4_D
7
-7.080
0.133
0.195
-0.234
0.627
1
19
C
8
D
3
5.066
C_C8:G3_D
8
-16.970
0.370
0.287
-0.093
-7.244
1
19
C
9
D
2
2.071
C_G9:C2_D
9
-11.236
-0.671
-0.277
-0.255
-0.957
1
19
C
10
D
1
5.298
C_C10:G1_D
10
-6.056
0.417
-0.237
-0.181
3.136
36.354
C
C
1
2
3.653
D
D
10
9
3.240
2.274
-0.010
-1.342
CC_G1C2:G9C10_DD
1
3.751
-6.026
36.097
-2.461
0.527
2.447
35.467
C
C
2
3
17.886
D
D
9
8
3.178
10.726
0.142
-1.950
CC_C2G3:C8G9_DD
2
-2.644
4.409
33.756
-4.589
-0.576
3.356
30.055
C
C
3
4
2.407
D
D
8
7
3.437
1.248
-0.202
-1.990
CC_G3C4:G7C8_DD
3
-0.502
0.968
30.026
-4.104
0.283
2.675
23.824
C
C
4
5
15.422
D
D
7
6
3.209
6.292
0.202
-1.643
CC_C4G5:C6G7_DD
4
0.841
-2.062
22.974
-5.871
-0.237
2.877
37.765
C
C
5
6
6.552
D
D
6
5
3.137
4.225
0.201
-1.897
CC_G5C6:G5C6_DD
5
-4.041
6.266
37.326
-3.434
-0.793
2.782
28.247
C
C
6
7
7.302
D
D
5
4
3.018
3.553
-0.858
-2.055
CC_C6G7:C4G5_DD
6
-1.527
3.138
27.986
-4.948
1.442
2.723
32.109
C
C
7
8
12.326
D
D
4
3
3.170
6.752
-0.396
-1.968
CC_G7C8:G3C4_DD
7
-3.948
7.207
31.166
-4.666
0.067
2.354
28.150
C
C
8
9
21.239
D
D
3
2
3.261
10.101
-0.268
-1.907
CC_C8G9:C2G3_DD
8
1.900
-3.994
26.242
-6.026
0.947
2.963
36.851
C
C
9
10
7.180
D
D
2
1
3.145
4.528
0.446
-1.235
CC_G9C10:G1C2_DD
9
-1.041
1.650
36.567
-2.529
-0.839
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-08-07
1
1
2013-09-11
1
2
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SNAPSHOT 3 OF RIG-I SCANNING ON RNA DUPLEX
PDBE
Y
PDBE
2012-11-25
REL
REL
ZN
ZINC ION
HOH
water
32630
SYNTHETIC CONSTRUCT
sample
2YKG
PDB ENTRY 2YKG
PDB
experimental model
ZN
927
3
ZN
ZN
927
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2001
4
HOH
HOH
2001
C
HOH
2001
4
HOH
HOH
2001
D
n
1
230
A
n
2
231
A
n
3
232
A
n
4
233
A
n
5
234
A
n
6
235
A
ASN
236
n
7
ASN
236
A
LEU
237
n
8
LEU
237
A
TYR
238
n
9
TYR
238
A
SER
239
n
10
SER
239
A
PRO
240
n
11
PRO
240
A
PHE
241
n
12
PHE
241
A
LYS
242
n
13
LYS
242
A
PRO
243
n
14
PRO
243
A
ARG
244
n
15
ARG
244
A
ASN
245
n
16
ASN
245
A
TYR
246
n
17
TYR
246
A
GLN
247
n
18
GLN
247
A
LEU
248
n
19
LEU
248
A
GLU
249
n
20
GLU
249
A
LEU
250
n
21
LEU
250
A
ALA
251
n
22
ALA
251
A
LEU
252
n
23
LEU
252
A
PRO
253
n
24
PRO
253
A
ALA
254
n
25
ALA
254
A
MET
255
n
26
MET
255
A
LYS
256
n
27
LYS
256
A
GLY
257
n
28
GLY
257
A
LYS
258
n
29
LYS
258
A
ASN
259
n
30
ASN
259
A
THR
260
n
31
THR
260
A
ILE
261
n
32
ILE
261
A
ILE
262
n
33
ILE
262
A
CYS
263
n
34
CYS
263
A
ALA
264
n
35
ALA
264
A
PRO
265
n
36
PRO
265
A
THR
266
n
37
THR
266
A
GLY
267
n
38
GLY
267
A
CYS
268
n
39
CYS
268
A
GLY
269
n
40
GLY
269
A
LYS
270
n
41
LYS
270
A
THR
271
n
42
THR
271
A
PHE
272
n
43
PHE
272
A
VAL
273
n
44
VAL
273
A
SER
274
n
45
SER
274
A
LEU
275
n
46
LEU
275
A
LEU
276
n
47
LEU
276
A
ILE
277
n
48
ILE
277
A
CYS
278
n
49
CYS
278
A
GLU
279
n
50
GLU
279
A
HIS
280
n
51
HIS
280
A
HIS
281
n
52
HIS
281
A
LEU
282
n
53
LEU
282
A
LYS
283
n
54
LYS
283
A
LYS
284
n
55
LYS
284
A
PHE
285
n
56
PHE
285
A
PRO
286
n
57
PRO
286
A
ASN
287
n
58
ASN
287
A
GLY
288
n
59
GLY
288
A
GLN
289
n
60
GLN
289
A
LYS
290
n
61
LYS
290
A
GLY
291
n
62
GLY
291
A
LYS
292
n
63
LYS
292
A
VAL
293
n
64
VAL
293
A
VAL
294
n
65
VAL
294
A
PHE
295
n
66
PHE
295
A
PHE
296
n
67
PHE
296
A
ALA
297
n
68
ALA
297
A
ASN
298
n
69
ASN
298
A
GLN
299
n
70
GLN
299
A
ILE
300
n
71
ILE
300
A
PRO
301
n
72
PRO
301
A
VAL
302
n
73
VAL
302
A
TYR
303
n
74
TYR
303
A
GLU
304
n
75
GLU
304
A
GLN
305
n
76
GLN
305
A
ASN
306
n
77
ASN
306
A
LYS
307
n
78
LYS
307
A
SER
308
n
79
SER
308
A
VAL
309
n
80
VAL
309
A
PHE
310
n
81
PHE
310
A
SER
311
n
82
SER
311
A
LYS
312
n
83
LYS
312
A
TYR
313
n
84
TYR
313
A
PHE
314
n
85
PHE
314
A
GLU
315
n
86
GLU
315
A
ARG
316
n
87
ARG
316
A
HIS
317
n
88
HIS
317
A
GLY
318
n
89
GLY
318
A
TYR
319
n
90
TYR
319
A
ARG
320
n
91
ARG
320
A
VAL
321
n
92
VAL
321
A
THR
322
n
93
THR
322
A
GLY
323
n
94
GLY
323
A
ILE
324
n
95
ILE
324
A
SER
325
n
96
SER
325
A
GLY
326
n
97
GLY
326
A
ALA
327
n
98
ALA
327
A
THR
328
n
99
THR
328
A
ALA
329
n
100
ALA
329
A
GLU
330
n
101
GLU
330
A
ASN
331
n
102
ASN
331
A
VAL
332
n
103
VAL
332
A
PRO
333
n
104
PRO
333
A
VAL
334
n
105
VAL
334
A
GLU
335
n
106
GLU
335
A
GLN
336
n
107
GLN
336
A
ILE
337
n
108
ILE
337
A
VAL
338
n
109
VAL
338
A
GLU
339
n
110
GLU
339
A
ASN
340
n
111
ASN
340
A
ASN
341
n
112
ASN
341
A
ASP
342
n
113
ASP
342
A
ILE
343
n
114
ILE
343
A
ILE
344
n
115
ILE
344
A
ILE
345
n
116
ILE
345
A
LEU
346
n
117
LEU
346
A
THR
347
n
118
THR
347
A
PRO
348
n
119
PRO
348
A
GLN
349
n
120
GLN
349
A
ILE
350
n
121
ILE
350
A
LEU
351
n
122
LEU
351
A
VAL
352
n
123
VAL
352
A
ASN
353
n
124
ASN
353
A
ASN
354
n
125
ASN
354
A
LEU
355
n
126
LEU
355
A
LYS
356
n
127
LYS
356
A
LYS
357
n
128
LYS
357
A
GLY
358
n
129
GLY
358
A
THR
359
n
130
THR
359
A
ILE
360
n
131
ILE
360
A
PRO
361
n
132
PRO
361
A
SER
362
n
133
SER
362
A
LEU
363
n
134
LEU
363
A
SER
364
n
135
SER
364
A
ILE
365
n
136
ILE
365
A
PHE
366
n
137
PHE
366
A
THR
367
n
138
THR
367
A
LEU
368
n
139
LEU
368
A
MET
369
n
140
MET
369
A
ILE
370
n
141
ILE
370
A
PHE
371
n
142
PHE
371
A
ASP
372
n
143
ASP
372
A
GLU
373
n
144
GLU
373
A
CYS
374
n
145
CYS
374
A
HIS
375
n
146
HIS
375
A
ASN
376
n
147
ASN
376
A
THR
377
n
148
THR
377
A
SER
378
n
149
SER
378
A
LYS
379
n
150
LYS
379
A
GLN
380
n
151
GLN
380
A
HIS
381
n
152
HIS
381
A
PRO
382
n
153
PRO
382
A
TYR
383
n
154
TYR
383
A
ASN
384
n
155
ASN
384
A
MET
385
n
156
MET
385
A
ILE
386
n
157
ILE
386
A
MET
387
n
158
MET
387
A
PHE
388
n
159
PHE
388
A
ASN
389
n
160
ASN
389
A
TYR
390
n
161
TYR
390
A
LEU
391
n
162
LEU
391
A
ASP
392
n
163
ASP
392
A
GLN
393
n
164
GLN
393
A
LYS
394
n
165
LYS
394
A
LEU
395
n
166
LEU
395
A
GLY
396
n
167
GLY
396
A
GLY
397
n
168
GLY
397
A
SER
398
n
169
SER
398
A
SER
399
n
170
SER
399
A
GLY
400
n
171
GLY
400
A
PRO
401
n
172
PRO
401
A
LEU
402
n
173
LEU
402
A
PRO
403
n
174
PRO
403
A
GLN
404
n
175
GLN
404
A
VAL
405
n
176
VAL
405
A
ILE
406
n
177
ILE
406
A
GLY
407
n
178
GLY
407
A
LEU
408
n
179
LEU
408
A
THR
409
n
180
THR
409
A
ALA
410
n
181
ALA
410
A
SER
411
n
182
SER
411
A
VAL
412
n
183
VAL
412
A
GLY
413
n
184
GLY
413
A
VAL
414
n
185
VAL
414
A
GLY
415
n
186
GLY
415
A
ASP
416
n
187
ASP
416
A
ALA
417
n
188
ALA
417
A
LYS
418
n
189
LYS
418
A
ASN
419
n
190
ASN
419
A
THR
420
n
191
THR
420
A
ASP
421
n
192
ASP
421
A
GLU
422
n
193
GLU
422
A
ALA
423
n
194
ALA
423
A
LEU
424
n
195
LEU
424
A
ASP
425
n
196
ASP
425
A
TYR
426
n
197
TYR
426
A
ILE
427
n
198
ILE
427
A
CYS
428
n
199
CYS
428
A
LYS
429
n
200
LYS
429
A
LEU
430
n
201
LEU
430
A
CYS
431
n
202
CYS
431
A
ALA
432
n
203
ALA
432
A
SER
433
n
204
SER
433
A
LEU
434
n
205
LEU
434
A
ASP
435
n
206
ASP
435
A
ALA
436
n
207
ALA
436
A
SER
437
n
208
SER
437
A
VAL
438
n
209
VAL
438
A
ILE
439
n
210
ILE
439
A
ALA
440
n
211
ALA
440
A
THR
441
n
212
THR
441
A
VAL
442
n
213
VAL
442
A
LYS
443
n
214
LYS
443
A
HIS
444
n
215
HIS
444
A
ASN
445
n
216
ASN
445
A
LEU
446
n
217
LEU
446
A
GLU
447
n
218
GLU
447
A
GLU
448
n
219
GLU
448
A
LEU
449
n
220
LEU
449
A
GLU
450
n
221
GLU
450
A
GLN
451
n
222
GLN
451
A
VAL
452
n
223
VAL
452
A
VAL
453
n
224
VAL
453
A
TYR
454
n
225
TYR
454
A
LYS
455
n
226
LYS
455
A
PRO
456
n
227
PRO
456
A
GLN
457
n
228
GLN
457
A
LYS
458
n
229
LYS
458
A
PHE
459
n
230
PHE
459
A
PHE
460
n
231
PHE
460
A
ARG
461
n
232
ARG
461
A
LYS
462
n
233
LYS
462
A
VAL
463
n
234
VAL
463
A
GLU
464
n
235
GLU
464
A
SER
465
n
236
SER
465
A
ARG
466
n
237
ARG
466
A
ILE
467
n
238
ILE
467
A
SER
468
n
239
SER
468
A
ASP
469
n
240
ASP
469
A
LYS
470
n
241
LYS
470
A
PHE
471
n
242
PHE
471
A
LYS
472
n
243
LYS
472
A
TYR
473
n
244
TYR
473
A
ILE
474
n
245
ILE
474
A
ILE
475
n
246
ILE
475
A
ALA
476
n
247
ALA
476
A
GLN
477
n
248
GLN
477
A
LEU
478
n
249
LEU
478
A
MET
479
n
250
MET
479
A
ARG
480
n
251
ARG
480
A
ASP
481
n
252
ASP
481
A
THR
482
n
253
THR
482
A
GLU
483
n
254
GLU
483
A
SER
484
n
255
SER
484
A
LEU
485
n
256
LEU
485
A
ALA
486
n
257
ALA
486
A
LYS
487
n
258
LYS
487
A
ARG
488
n
259
ARG
488
A
ILE
489
n
260
ILE
489
A
CYS
490
n
261
CYS
490
A
LYS
491
n
262
LYS
491
A
ASP
492
n
263
ASP
492
A
LEU
493
n
264
LEU
493
A
GLU
494
n
265
GLU
494
A
ASN
495
n
266
ASN
495
A
LEU
496
n
267
LEU
496
A
SER
497
n
268
SER
497
A
GLN
498
n
269
GLN
498
A
ILE
499
n
270
ILE
499
A
GLN
500
n
271
GLN
500
A
ASN
501
n
272
ASN
501
A
ARG
502
n
273
ARG
502
A
GLU
503
n
274
GLU
503
A
PHE
504
n
275
PHE
504
A
GLY
505
n
276
GLY
505
A
THR
506
n
277
THR
506
A
GLN
507
n
278
GLN
507
A
LYS
508
n
279
LYS
508
A
TYR
509
n
280
TYR
509
A
GLU
510
n
281
GLU
510
A
GLN
511
n
282
GLN
511
A
TRP
512
n
283
TRP
512
A
ILE
513
n
284
ILE
513
A
VAL
514
n
285
VAL
514
A
THR
515
n
286
THR
515
A
VAL
516
n
287
VAL
516
A
GLN
517
n
288
GLN
517
A
LYS
518
n
289
LYS
518
A
ALA
519
n
290
ALA
519
A
CYS
520
n
291
CYS
520
A
MET
521
n
292
MET
521
A
n
293
522
A
n
294
523
A
n
295
524
A
n
296
525
A
n
297
526
A
n
298
527
A
n
299
528
A
n
300
529
A
n
301
530
A
n
302
531
A
SER
532
n
303
SER
532
A
ARG
533
n
304
ARG
533
A
ILE
534
n
305
ILE
534
A
CYS
535
n
306
CYS
535
A
LYS
536
n
307
LYS
536
A
ALA
537
n
308
ALA
537
A
LEU
538
n
309
LEU
538
A
PHE
539
n
310
PHE
539
A
LEU
540
n
311
LEU
540
A
TYR
541
n
312
TYR
541
A
THR
542
n
313
THR
542
A
SER
543
n
314
SER
543
A
HIS
544
n
315
HIS
544
A
LEU
545
n
316
LEU
545
A
ARG
546
n
317
ARG
546
A
LYS
547
n
318
LYS
547
A
TYR
548
n
319
TYR
548
A
ASN
549
n
320
ASN
549
A
ASP
550
n
321
ASP
550
A
ALA
551
n
322
ALA
551
A
LEU
552
n
323
LEU
552
A
ILE
553
n
324
ILE
553
A
ILE
554
n
325
ILE
554
A
SER
555
n
326
SER
555
A
GLU
556
n
327
GLU
556
A
HIS
557
n
328
HIS
557
A
ALA
558
n
329
ALA
558
A
ARG
559
n
330
ARG
559
A
MET
560
n
331
MET
560
A
LYS
561
n
332
LYS
561
A
ASP
562
n
333
ASP
562
A
ALA
563
n
334
ALA
563
A
LEU
564
n
335
LEU
564
A
ASP
565
n
336
ASP
565
A
TYR
566
n
337
TYR
566
A
LEU
567
n
338
LEU
567
A
LYS
568
n
339
LYS
568
A
ASP
569
n
340
ASP
569
A
PHE
570
n
341
PHE
570
A
PHE
571
n
342
PHE
571
A
SER
572
n
343
SER
572
A
ASN
573
n
344
ASN
573
A
VAL
574
n
345
VAL
574
A
ARG
575
n
346
ARG
575
A
ALA
576
n
347
ALA
576
A
ALA
577
n
348
ALA
577
A
GLY
578
n
349
GLY
578
A
PHE
579
n
350
PHE
579
A
ASP
580
n
351
ASP
580
A
GLU
581
n
352
GLU
581
A
ILE
582
n
353
ILE
582
A
GLU
583
n
354
GLU
583
A
GLN
584
n
355
GLN
584
A
ASP
585
n
356
ASP
585
A
LEU
586
n
357
LEU
586
A
THR
587
n
358
THR
587
A
GLN
588
n
359
GLN
588
A
ARG
589
n
360
ARG
589
A
PHE
590
n
361
PHE
590
A
GLU
591
n
362
GLU
591
A
GLU
592
n
363
GLU
592
A
LYS
593
n
364
LYS
593
A
LEU
594
n
365
LEU
594
A
GLN
595
n
366
GLN
595
A
GLU
596
n
367
GLU
596
A
LEU
597
n
368
LEU
597
A
GLU
598
n
369
GLU
598
A
SER
599
n
370
SER
599
A
VAL
600
n
371
VAL
600
A
SER
601
n
372
SER
601
A
ARG
602
n
373
ARG
602
A
ASP
603
n
374
ASP
603
A
PRO
604
n
375
PRO
604
A
SER
605
n
376
SER
605
A
ASN
606
n
377
ASN
606
A
GLU
607
n
378
GLU
607
A
ASN
608
n
379
ASN
608
A
PRO
609
n
380
PRO
609
A
LYS
610
n
381
LYS
610
A
LEU
611
n
382
LEU
611
A
GLU
612
n
383
GLU
612
A
ASP
613
n
384
ASP
613
A
LEU
614
n
385
LEU
614
A
CYS
615
n
386
CYS
615
A
PHE
616
n
387
PHE
616
A
ILE
617
n
388
ILE
617
A
LEU
618
n
389
LEU
618
A
GLN
619
n
390
GLN
619
A
GLU
620
n
391
GLU
620
A
GLU
621
n
392
GLU
621
A
TYR
622
n
393
TYR
622
A
HIS
623
n
394
HIS
623
A
LEU
624
n
395
LEU
624
A
ASN
625
n
396
ASN
625
A
PRO
626
n
397
PRO
626
A
GLU
627
n
398
GLU
627
A
THR
628
n
399
THR
628
A
ILE
629
n
400
ILE
629
A
THR
630
n
401
THR
630
A
ILE
631
n
402
ILE
631
A
LEU
632
n
403
LEU
632
A
PHE
633
n
404
PHE
633
A
VAL
634
n
405
VAL
634
A
LYS
635
n
406
LYS
635
A
THR
636
n
407
THR
636
A
ARG
637
n
408
ARG
637
A
ALA
638
n
409
ALA
638
A
LEU
639
n
410
LEU
639
A
VAL
640
n
411
VAL
640
A
ASP
641
n
412
ASP
641
A
ALA
642
n
413
ALA
642
A
LEU
643
n
414
LEU
643
A
LYS
644
n
415
LYS
644
A
ASN
645
n
416
ASN
645
A
TRP
646
n
417
TRP
646
A
ILE
647
n
418
ILE
647
A
GLU
648
n
419
GLU
648
A
GLY
649
n
420
GLY
649
A
ASN
650
n
421
ASN
650
A
PRO
651
n
422
PRO
651
A
LYS
652
n
423
LYS
652
A
LEU
653
n
424
LEU
653
A
SER
654
n
425
SER
654
A
PHE
655
n
426
PHE
655
A
LEU
656
n
427
LEU
656
A
LYS
657
n
428
LYS
657
A
PRO
658
n
429
PRO
658
A
GLY
659
n
430
GLY
659
A
ILE
660
n
431
ILE
660
A
LEU
661
n
432
LEU
661
A
n
433
662
A
n
434
663
A
n
435
664
A
n
436
665
A
n
437
666
A
n
438
667
A
n
439
668
A
n
440
669
A
n
441
670
A
n
442
671
A
n
443
672
A
n
444
673
A
n
445
674
A
n
446
675
A
n
447
676
A
n
448
677
A
n
449
678
A
n
450
679
A
n
451
680
A
n
452
681
A
n
453
682
A
n
454
683
A
n
455
684
A
n
456
685
A
n
457
686
A
n
458
687
A
n
459
688
A
n
460
689
A
n
461
690
A
HIS
691
n
462
HIS
691
A
ASN
692
n
463
ASN
692
A
ILE
693
n
464
ILE
693
A
LEU
694
n
465
LEU
694
A
ILE
695
n
466
ILE
695
A
LEU
696
n
467
LEU
696
A
THR
697
n
468
THR
697
A
SER
698
n
469
SER
698
A
VAL
699
n
470
VAL
699
A
ALA
700
n
471
ALA
700
A
ASP
701
n
472
ASP
701
A
n
473
702
A
n
474
703
A
n
475
704
A
n
476
705
A
n
477
706
A
ALA
707
n
478
ALA
707
A
GLN
708
n
479
GLN
708
A
CYS
709
n
480
CYS
709
A
ASN
710
n
481
ASN
710
A
LEU
711
n
482
LEU
711
A
VAL
712
n
483
VAL
712
A
ILE
713
n
484
ILE
713
A
LEU
714
n
485
LEU
714
A
TYR
715
n
486
TYR
715
A
GLU
716
n
487
GLU
716
A
TYR
717
n
488
TYR
717
A
VAL
718
n
489
VAL
718
A
GLY
719
n
490
GLY
719
A
ASN
720
n
491
ASN
720
A
VAL
721
n
492
VAL
721
A
ILE
722
n
493
ILE
722
A
n
494
723
A
n
495
724
A
n
496
725
A
n
497
726
A
n
498
727
A
n
499
728
A
n
500
729
A
n
501
730
A
n
502
731
A
n
503
732
A
ALA
733
n
504
ALA
733
A
ARG
734
n
505
ARG
734
A
GLY
735
n
506
GLY
735
A
SER
736
n
507
SER
736
A
LYS
737
n
508
LYS
737
A
CYS
738
n
509
CYS
738
A
PHE
739
n
510
PHE
739
A
LEU
740
n
511
LEU
740
A
LEU
741
n
512
LEU
741
A
THR
742
n
513
THR
742
A
SER
743
n
514
SER
743
A
ASN
744
n
515
ASN
744
A
ALA
745
n
516
ALA
745
A
GLY
746
n
517
GLY
746
A
VAL
747
n
518
VAL
747
A
ILE
748
n
519
ILE
748
A
GLU
749
n
520
GLU
749
A
LYS
750
n
521
LYS
750
A
GLU
751
n
522
GLU
751
A
GLN
752
n
523
GLN
752
A
ILE
753
n
524
ILE
753
A
ASN
754
n
525
ASN
754
A
MET
755
n
526
MET
755
A
TYR
756
n
527
TYR
756
A
LYS
757
n
528
LYS
757
A
GLU
758
n
529
GLU
758
A
LYS
759
n
530
LYS
759
A
MET
760
n
531
MET
760
A
MET
761
n
532
MET
761
A
ASN
762
n
533
ASN
762
A
ASP
763
n
534
ASP
763
A
SER
764
n
535
SER
764
A
ILE
765
n
536
ILE
765
A
LEU
766
n
537
LEU
766
A
ARG
767
n
538
ARG
767
A
LEU
768
n
539
LEU
768
A
GLN
769
n
540
GLN
769
A
THR
770
n
541
THR
770
A
TRP
771
n
542
TRP
771
A
ASP
772
n
543
ASP
772
A
GLU
773
n
544
GLU
773
A
ALA
774
n
545
ALA
774
A
VAL
775
n
546
VAL
775
A
PHE
776
n
547
PHE
776
A
ARG
777
n
548
ARG
777
A
GLU
778
n
549
GLU
778
A
LYS
779
n
550
LYS
779
A
ILE
780
n
551
ILE
780
A
LEU
781
n
552
LEU
781
A
HIS
782
n
553
HIS
782
A
ILE
783
n
554
ILE
783
A
GLN
784
n
555
GLN
784
A
THR
785
n
556
THR
785
A
HIS
786
n
557
HIS
786
A
GLU
787
n
558
GLU
787
A
LYS
788
n
559
LYS
788
A
PHE
789
n
560
PHE
789
A
ILE
790
n
561
ILE
790
A
ARG
791
n
562
ARG
791
A
ASP
792
n
563
ASP
792
A
SER
793
n
564
SER
793
A
GLN
794
n
565
GLN
794
A
GLU
795
n
566
GLU
795
A
LYS
796
n
567
LYS
796
A
PRO
797
n
568
PRO
797
A
LYS
798
n
569
LYS
798
A
PRO
799
n
570
PRO
799
A
VAL
800
n
571
VAL
800
A
PRO
801
n
572
PRO
801
A
ASP
802
n
573
ASP
802
A
LYS
803
n
574
LYS
803
A
GLU
804
n
575
GLU
804
A
ASN
805
n
576
ASN
805
A
LYS
806
n
577
LYS
806
A
LYS
807
n
578
LYS
807
A
LEU
808
n
579
LEU
808
A
LEU
809
n
580
LEU
809
A
CYS
810
n
581
CYS
810
A
ARG
811
n
582
ARG
811
A
LYS
812
n
583
LYS
812
A
CYS
813
n
584
CYS
813
A
LYS
814
n
585
LYS
814
A
ALA
815
n
586
ALA
815
A
LEU
816
n
587
LEU
816
A
ALA
817
n
588
ALA
817
A
CYS
818
n
589
CYS
818
A
TYR
819
n
590
TYR
819
A
THR
820
n
591
THR
820
A
ALA
821
n
592
ALA
821
A
ASP
822
n
593
ASP
822
A
VAL
823
n
594
VAL
823
A
ARG
824
n
595
ARG
824
A
VAL
825
n
596
VAL
825
A
ILE
826
n
597
ILE
826
A
GLU
827
n
598
GLU
827
A
GLU
828
n
599
GLU
828
A
CYS
829
n
600
CYS
829
A
HIS
830
n
601
HIS
830
A
TYR
831
n
602
TYR
831
A
THR
832
n
603
THR
832
A
VAL
833
n
604
VAL
833
A
LEU
834
n
605
LEU
834
A
GLY
835
n
606
GLY
835
A
ASP
836
n
607
ASP
836
A
ALA
837
n
608
ALA
837
A
PHE
838
n
609
PHE
838
A
LYS
839
n
610
LYS
839
A
GLU
840
n
611
GLU
840
A
CYS
841
n
612
CYS
841
A
PHE
842
n
613
PHE
842
A
VAL
843
n
614
VAL
843
A
SER
844
n
615
SER
844
A
ARG
845
n
616
ARG
845
A
PRO
846
n
617
PRO
846
A
HIS
847
n
618
HIS
847
A
PRO
848
n
619
PRO
848
A
LYS
849
n
620
LYS
849
A
PRO
850
n
621
PRO
850
A
LYS
851
n
622
LYS
851
A
GLN
852
n
623
GLN
852
A
PHE
853
n
624
PHE
853
A
SER
854
n
625
SER
854
A
SER
855
n
626
SER
855
A
PHE
856
n
627
PHE
856
A
GLU
857
n
628
GLU
857
A
LYS
858
n
629
LYS
858
A
ARG
859
n
630
ARG
859
A
ALA
860
n
631
ALA
860
A
LYS
861
n
632
LYS
861
A
ILE
862
n
633
ILE
862
A
PHE
863
n
634
PHE
863
A
CYS
864
n
635
CYS
864
A
ALA
865
n
636
ALA
865
A
ARG
866
n
637
ARG
866
A
GLN
867
n
638
GLN
867
A
ASN
868
n
639
ASN
868
A
CYS
869
n
640
CYS
869
A
SER
870
n
641
SER
870
A
HIS
871
n
642
HIS
871
A
ASP
872
n
643
ASP
872
A
TRP
873
n
644
TRP
873
A
GLY
874
n
645
GLY
874
A
ILE
875
n
646
ILE
875
A
HIS
876
n
647
HIS
876
A
VAL
877
n
648
VAL
877
A
LYS
878
n
649
LYS
878
A
TYR
879
n
650
TYR
879
A
LYS
880
n
651
LYS
880
A
THR
881
n
652
THR
881
A
PHE
882
n
653
PHE
882
A
GLU
883
n
654
GLU
883
A
ILE
884
n
655
ILE
884
A
PRO
885
n
656
PRO
885
A
VAL
886
n
657
VAL
886
A
ILE
887
n
658
ILE
887
A
LYS
888
n
659
LYS
888
A
ILE
889
n
660
ILE
889
A
GLU
890
n
661
GLU
890
A
SER
891
n
662
SER
891
A
PHE
892
n
663
PHE
892
A
VAL
893
n
664
VAL
893
A
VAL
894
n
665
VAL
894
A
GLU
895
n
666
GLU
895
A
ASP
896
n
667
ASP
896
A
ILE
897
n
668
ILE
897
A
ALA
898
n
669
ALA
898
A
THR
899
n
670
THR
899
A
GLY
900
n
671
GLY
900
A
VAL
901
n
672
VAL
901
A
GLN
902
n
673
GLN
902
A
THR
903
n
674
THR
903
A
LEU
904
n
675
LEU
904
A
TYR
905
n
676
TYR
905
A
SER
906
n
677
SER
906
A
LYS
907
n
678
LYS
907
A
TRP
908
n
679
TRP
908
A
LYS
909
n
680
LYS
909
A
ASP
910
n
681
ASP
910
A
PHE
911
n
682
PHE
911
A
HIS
912
n
683
HIS
912
A
PHE
913
n
684
PHE
913
A
GLU
914
n
685
GLU
914
A
LYS
915
n
686
LYS
915
A
ILE
916
n
687
ILE
916
A
PRO
917
n
688
PRO
917
A
PHE
918
n
689
PHE
918
A
ASP
919
n
690
ASP
919
A
PRO
920
n
691
PRO
920
A
ALA
921
n
692
ALA
921
A
n
693
922
A
n
694
923
A
n
695
924
A
n
696
925
A
G
1
n
1
G
1
C
C
2
n
2
C
2
C
G
3
n
3
G
3
C
C
4
n
4
C
4
C
G
5
n
5
G
5
C
C
6
n
6
C
6
C
G
7
n
7
G
7
C
C
8
n
8
C
8
C
G
9
n
9
G
9
C
C
10
n
10
C
10
C
G
1
n
1
G
1
D
C
2
n
2
C
2
D
G
3
n
3
G
3
D
C
4
n
4
C
4
D
G
5
n
5
G
5
D
C
6
n
6
C
6
D
G
7
n
7
G
7
D
C
8
n
8
C
8
D
G
9
n
9
G
9
D
C
10
n
10
C
10
D
4.7769
0.3959
2.7710
6.3750
4.3724
8.1561
-0.3218
0.5901
0.6696
-0.4679
0.5162
-0.8759
-0.9934
0.7768
-0.1944
0.1232
-0.0746
0.0199
0.4581
0.1458
0.2983
refined
10.6778
-11.1970
-9.5813
X-RAY DIFFRACTION
3.8468
0.4947
0.3981
3.0389
-0.2383
4.9584
-0.0678
0.4691
0.0387
-0.2915
0.0527
-0.0401
0.0128
0.3168
0.0151
0.0467
-0.0298
-0.0144
0.2969
0.1657
0.1693
refined
1.6128
-15.9915
-19.1345
X-RAY DIFFRACTION
2.9464
0.4105
1.4788
3.5708
-0.3301
6.9692
-0.4163
-0.1043
0.0674
0.0848
0.1059
-0.0988
-0.3752
-0.1023
0.3104
0.7574
0.0389
-0.0827
0.2958
0.1299
0.5169
refined
-9.6447
27.1603
-27.2740
X-RAY DIFFRACTION
1.5606
-0.5249
-0.0007
5.6421
-0.4956
3.2288
-0.0985
-0.0179
0.3254
-0.1151
0.0588
0.0126
-0.6145
-0.3079
0.0396
0.1679
0.0065
0.0176
0.4499
0.2001
0.3957
refined
-12.0099
-7.2875
-9.0077
X-RAY DIFFRACTION
8.0104
3.2343
-0.1950
11.6282
-1.5520
9.3104
0.0499
0.0925
-0.1987
-1.2303
0.0085
-0.0026
0.3926
0.1455
-0.0585
0.5354
0.0321
-0.1367
0.4011
0.0243
0.2049
refined
-19.5370
-9.3410
-48.5846
X-RAY DIFFRACTION
8.2538
1.7305
1.0261
6.2416
-2.8055
2.7216
0.2189
-0.1171
0.8236
0.5422
0.0003
0.5996
-0.2581
-0.6652
-0.2192
0.2070
-0.0205
0.0069
0.4285
0.1437
0.3659
refined
-17.7835
-4.0832
-28.8119
X-RAY DIFFRACTION
25.1263
-7.0501
2.8913
8.1699
1.4916
3.6223
0.2781
-0.1509
1.6516
0.5501
-0.1334
0.3101
-0.4345
-0.5801
-0.1446
0.3476
-0.0672
0.2045
0.5727
0.2709
0.4310
refined
-16.2349
-2.3646
-31.5206
X-RAY DIFFRACTION
A
235
A
285
X-RAY DIFFRACTION
1
A
286
A
455
X-RAY DIFFRACTION
2
A
456
A
716
X-RAY DIFFRACTION
3
A
717
A
798
X-RAY DIFFRACTION
4
A
799
A
919
X-RAY DIFFRACTION
5
C
1
C
10
X-RAY DIFFRACTION
6
D
1
D
10
X-RAY DIFFRACTION
7
author_and_software_defined_assembly
PISA
3
trimeric
3000
-29.0
34650
A
CYS
810
A
SG
CYS
581
1_555
A
ZN
927
D
ZN
ZN
1_555
A
CYS
813
A
SG
CYS
584
1_555
104.6
A
CYS
810
A
SG
CYS
581
1_555
A
ZN
927
D
ZN
ZN
1_555
A
CYS
864
A
SG
CYS
635
1_555
117.3
A
CYS
813
A
SG
CYS
584
1_555
A
ZN
927
D
ZN
ZN
1_555
A
CYS
864
A
SG
CYS
635
1_555
113.6
A
CYS
810
A
SG
CYS
581
1_555
A
ZN
927
D
ZN
ZN
1_555
A
CYS
869
A
SG
CYS
640
1_555
105.8
A
CYS
813
A
SG
CYS
584
1_555
A
ZN
927
D
ZN
ZN
1_555
A
CYS
869
A
SG
CYS
640
1_555
104.9
A
CYS
864
A
SG
CYS
635
1_555
A
ZN
927
D
ZN
ZN
1_555
A
CYS
869
A
SG
CYS
640
1_555
109.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
322
A
N
THR
93
A
O
ILE
343
A
O
ILE
114
A
N
ILE
344
A
N
ILE
115
A
O
VAL
293
A
O
VAL
64
A
N
VAL
294
A
N
VAL
65
A
O
LEU
368
A
O
LEU
139
A
N
MET
369
A
N
MET
140
A
O
GLN
404
A
O
GLN
175
A
N
GLY
407
A
N
GLY
178
A
O
THR
260
A
O
THR
31
A
N
ILE
261
A
N
ILE
32
A
O
VAL
438
A
O
VAL
209
A
N
PHE
459
A
N
PHE
230
A
O
CYS
738
A
O
CYS
509
A
N
PHE
739
A
N
PHE
510
A
O
VAL
712
A
O
VAL
483
A
N
ILE
713
A
N
ILE
484
A
O
ILE
631
A
O
ILE
402
A
N
LEU
632
A
N
LEU
403
A
O
LEU
696
A
O
LEU
467
A
N
THR
697
A
N
THR
468
A
O
GLY
659
A
O
GLY
430
A
N
ALA
817
A
N
ALA
588
A
O
LEU
808
A
O
LEU
579
A
N
LEU
809
A
N
LEU
580
A
O
VAL
893
A
O
VAL
664
A
N
VAL
894
A
N
VAL
665
A
O
THR
903
A
O
THR
674
A
N
ILE
826
A
N
ILE
597
A
O
HIS
830
A
O
HIS
601
A
N
VAL
843
A
N
VAL
614
A
O
PHE
863
A
O
PHE
634
A
O
ILE
862
A
O
ILE
633
A
N
TRP
873
A
N
TRP
644
A
N
TYR
879
A
N
TYR
650
A
O
PHE
882
A
O
PHE
653
1
A
CG
ASN
236
A
CG
ASN
7
1
Y
1
A
OD1
ASN
236
A
OD1
ASN
7
1
Y
1
A
ND2
ASN
236
A
ND2
ASN
7
1
Y
1
A
CG
LYS
290
A
CG
LYS
61
1
Y
1
A
CD
LYS
290
A
CD
LYS
61
1
Y
1
A
CE
LYS
290
A
CE
LYS
61
1
Y
1
A
NZ
LYS
290
A
NZ
LYS
61
1
Y
1
A
CG
ARG
316
A
CG
ARG
87
1
Y
1
A
CD
ARG
316
A
CD
ARG
87
1
Y
1
A
NE
ARG
316
A
NE
ARG
87
1
Y
1
A
CZ
ARG
316
A
CZ
ARG
87
1
Y
1
A
NH1
ARG
316
A
NH1
ARG
87
1
Y
1
A
NH2
ARG
316
A
NH2
ARG
87
1
Y
1
A
CG
GLU
330
A
CG
GLU
101
1
Y
1
A
CD
GLU
330
A
CD
GLU
101
1
Y
1
A
OE1
GLU
330
A
OE1
GLU
101
1
Y
1
A
OE2
GLU
330
A
OE2
GLU
101
1
Y
1
A
CG
ASN
331
A
CG
ASN
102
1
Y
1
A
OD1
ASN
331
A
OD1
ASN
102
1
Y
1
A
ND2
ASN
331
A
ND2
ASN
102
1
Y
1
A
CG
GLU
335
A
CG
GLU
106
1
Y
1
A
CD
GLU
335
A
CD
GLU
106
1
Y
1
A
OE1
GLU
335
A
OE1
GLU
106
1
Y
1
A
OE2
GLU
335
A
OE2
GLU
106
1
Y
1
A
CG2
THR
367
A
CG2
THR
138
1
Y
1
A
CG
GLU
447
A
CG
GLU
218
1
Y
1
A
CD
GLU
447
A
CD
GLU
218
1
Y
1
A
OE1
GLU
447
A
OE1
GLU
218
1
Y
1
A
OE2
GLU
447
A
OE2
GLU
218
1
Y
1
A
CG
GLU
450
A
CG
GLU
221
1
Y
1
A
CD
GLU
450
A
CD
GLU
221
1
Y
1
A
OE1
GLU
450
A
OE1
GLU
221
1
Y
1
A
OE2
GLU
450
A
OE2
GLU
221
1
Y
1
A
CG1
VAL
453
A
CG1
VAL
224
1
Y
1
A
CG2
VAL
453
A
CG2
VAL
224
1
Y
1
A
CG
TYR
454
A
CG
TYR
225
1
Y
1
A
CD1
TYR
454
A
CD1
TYR
225
1
Y
1
A
CD2
TYR
454
A
CD2
TYR
225
1
Y
1
A
CE1
TYR
454
A
CE1
TYR
225
1
Y
1
A
CE2
TYR
454
A
CE2
TYR
225
1
Y
1
A
CZ
TYR
454
A
CZ
TYR
225
1
Y
1
A
OH
TYR
454
A
OH
TYR
225
1
Y
1
A
CG
LYS
455
A
CG
LYS
226
1
Y
1
A
CD
LYS
455
A
CD
LYS
226
1
Y
1
A
CE
LYS
455
A
CE
LYS
226
1
Y
1
A
NZ
LYS
455
A
NZ
LYS
226
1
Y
1
A
CG
LYS
491
A
CG
LYS
262
1
Y
1
A
CD
LYS
491
A
CD
LYS
262
1
Y
1
A
CE
LYS
491
A
CE
LYS
262
1
Y
1
A
NZ
LYS
491
A
NZ
LYS
262
1
Y
1
A
CG
ASP
492
A
CG
ASP
263
1
Y
1
A
OD1
ASP
492
A
OD1
ASP
263
1
Y
1
A
OD2
ASP
492
A
OD2
ASP
263
1
Y
1
A
CG
GLN
498
A
CG
GLN
269
1
Y
1
A
CD
GLN
498
A
CD
GLN
269
1
Y
1
A
OE1
GLN
498
A
OE1
GLN
269
1
Y
1
A
NE2
GLN
498
A
NE2
GLN
269
1
Y
1
A
CG
LYS
518
A
CG
LYS
289
1
Y
1
A
CD
LYS
518
A
CD
LYS
289
1
Y
1
A
CE
LYS
518
A
CE
LYS
289
1
Y
1
A
NZ
LYS
518
A
NZ
LYS
289
1
Y
1
A
CG
ARG
533
A
CG
ARG
304
1
Y
1
A
CD
ARG
533
A
CD
ARG
304
1
Y
1
A
NE
ARG
533
A
NE
ARG
304
1
Y
1
A
CZ
ARG
533
A
CZ
ARG
304
1
Y
1
A
NH1
ARG
533
A
NH1
ARG
304
1
Y
1
A
NH2
ARG
533
A
NH2
ARG
304
1
Y
1
A
CG
LYS
561
A
CG
LYS
332
1
Y
1
A
CD
LYS
561
A
CD
LYS
332
1
Y
1
A
CE
LYS
561
A
CE
LYS
332
1
Y
1
A
NZ
LYS
561
A
NZ
LYS
332
1
Y
1
A
CG
GLU
581
A
CG
GLU
352
1
Y
1
A
CD
GLU
581
A
CD
GLU
352
1
Y
1
A
OE1
GLU
581
A
OE1
GLU
352
1
Y
1
A
OE2
GLU
581
A
OE2
GLU
352
1
Y
1
A
CG
GLU
612
A
CG
GLU
383
1
Y
1
A
CD
GLU
612
A
CD
GLU
383
1
Y
1
A
OE1
GLU
612
A
OE1
GLU
383
1
Y
1
A
OE2
GLU
612
A
OE2
GLU
383
1
Y
1
A
CG
ASP
613
A
CG
ASP
384
1
Y
1
A
OD1
ASP
613
A
OD1
ASP
384
1
Y
1
A
OD2
ASP
613
A
OD2
ASP
384
1
Y
1
A
CG
HIS
623
A
CG
HIS
394
1
Y
1
A
ND1
HIS
623
A
ND1
HIS
394
1
Y
1
A
CD2
HIS
623
A
CD2
HIS
394
1
Y
1
A
CE1
HIS
623
A
CE1
HIS
394
1
Y
1
A
NE2
HIS
623
A
NE2
HIS
394
1
Y
1
A
CG
GLU
627
A
CG
GLU
398
1
Y
1
A
CD
GLU
627
A
CD
GLU
398
1
Y
1
A
OE1
GLU
627
A
OE1
GLU
398
1
Y
1
A
OE2
GLU
627
A
OE2
GLU
398
1
Y
1
A
CG
LYS
652
A
CG
LYS
423
1
Y
1
A
CD
LYS
652
A
CD
LYS
423
1
Y
1
A
CE
LYS
652
A
CE
LYS
423
1
Y
1
A
NZ
LYS
652
A
NZ
LYS
423
1
Y
1
A
CG
LYS
657
A
CG
LYS
428
1
Y
1
A
CD
LYS
657
A
CD
LYS
428
1
Y
1
A
CE
LYS
657
A
CE
LYS
428
1
Y
1
A
NZ
LYS
657
A
NZ
LYS
428
1
Y
1
A
CG
LEU
661
A
CG
LEU
432
1
Y
1
A
CD1
LEU
661
A
CD1
LEU
432
1
Y
1
A
CD2
LEU
661
A
CD2
LEU
432
1
Y
1
A
CG
HIS
691
A
CG
HIS
462
1
Y
1
A
ND1
HIS
691
A
ND1
HIS
462
1
Y
1
A
CD2
HIS
691
A
CD2
HIS
462
1
Y
1
A
CE1
HIS
691
A
CE1
HIS
462
1
Y
1
A
NE2
HIS
691
A
NE2
HIS
462
1
Y
1
A
CG
ASN
692
A
CG
ASN
463
1
Y
1
A
OD1
ASN
692
A
OD1
ASN
463
1
Y
1
A
ND2
ASN
692
A
ND2
ASN
463
1
Y
1
A
CG
ASP
701
A
CG
ASP
472
1
Y
1
A
OD1
ASP
701
A
OD1
ASP
472
1
Y
1
A
OD2
ASP
701
A
OD2
ASP
472
1
Y
1
A
CG
GLN
708
A
CG
GLN
479
1
Y
1
A
CD
GLN
708
A
CD
GLN
479
1
Y
1
A
OE1
GLN
708
A
OE1
GLN
479
1
Y
1
A
NE2
GLN
708
A
NE2
GLN
479
1
Y
1
A
CG1
VAL
718
A
CG1
VAL
489
1
Y
1
A
CG2
VAL
718
A
CG2
VAL
489
1
Y
1
A
CG1
ILE
722
A
CG1
ILE
493
1
Y
1
A
CG2
ILE
722
A
CG2
ILE
493
1
Y
1
A
CD1
ILE
722
A
CD1
ILE
493
1
Y
1
A
CG
ARG
734
A
CG
ARG
505
1
Y
1
A
CD
ARG
734
A
CD
ARG
505
1
Y
1
A
NE
ARG
734
A
NE
ARG
505
1
Y
1
A
CZ
ARG
734
A
CZ
ARG
505
1
Y
1
A
NH1
ARG
734
A
NH1
ARG
505
1
Y
1
A
NH2
ARG
734
A
NH2
ARG
505
1
Y
1
A
CG
LYS
750
A
CG
LYS
521
1
Y
1
A
CD
LYS
750
A
CD
LYS
521
1
Y
1
A
CE
LYS
750
A
CE
LYS
521
1
Y
1
A
NZ
LYS
750
A
NZ
LYS
521
1
Y
1
A
OG
SER
793
A
OG
SER
564
1
Y
1
A
CG
GLU
795
A
CG
GLU
566
1
Y
1
A
CD
GLU
795
A
CD
GLU
566
1
Y
1
A
OE1
GLU
795
A
OE1
GLU
566
1
Y
1
A
OE2
GLU
795
A
OE2
GLU
566
1
Y
1
A
CG
LYS
796
A
CG
LYS
567
1
Y
1
A
CD
LYS
796
A
CD
LYS
567
1
Y
1
A
CE
LYS
796
A
CE
LYS
567
1
Y
1
A
NZ
LYS
796
A
NZ
LYS
567
1
Y
1
A
CG
LYS
798
A
CG
LYS
569
1
Y
1
A
CD
LYS
798
A
CD
LYS
569
1
Y
1
A
CE
LYS
798
A
CE
LYS
569
1
Y
1
A
NZ
LYS
798
A
NZ
LYS
569
1
Y
1
A
NZ
LYS
807
A
NZ
LYS
578
1
Y
1
A
CG
LYS
851
A
CG
LYS
622
1
Y
1
A
CD
LYS
851
A
CD
LYS
622
1
Y
1
A
CE
LYS
851
A
CE
LYS
622
1
Y
1
A
NZ
LYS
851
A
NZ
LYS
622
1
Y
1
A
OG
SER
854
A
OG
SER
625
1
Y
1
A
OG
SER
855
A
OG
SER
626
1
Y
1
A
NZ
LYS
878
A
NZ
LYS
649
1
Y
1
A
CG
LYS
909
A
CG
LYS
680
1
Y
1
A
CD
LYS
909
A
CD
LYS
680
1
Y
1
A
CE
LYS
909
A
CE
LYS
680
1
Y
1
A
NZ
LYS
909
A
NZ
LYS
680
1
Y
1
A
CG
GLU
914
A
CG
GLU
685
1
Y
1
A
CD
GLU
914
A
CD
GLU
685
1
Y
1
A
OE1
GLU
914
A
OE1
GLU
685
1
Y
1
A
OE2
GLU
914
A
OE2
GLU
685
1
Y
1
A
SER
230
A
SER
1
1
Y
1
A
GLU
231
A
GLU
2
1
Y
1
A
VAL
232
A
VAL
3
1
Y
1
A
SER
233
A
SER
4
1
Y
1
A
ASP
234
A
ASP
5
1
Y
1
A
THR
235
A
THR
6
1
Y
1
A
VAL
522
A
VAL
293
1
Y
1
A
PHE
523
A
PHE
294
1
Y
1
A
GLN
524
A
GLN
295
1
Y
1
A
MET
525
A
MET
296
1
Y
1
A
PRO
526
A
PRO
297
1
Y
1
A
ASP
527
A
ASP
298
1
Y
1
A
LYS
528
A
LYS
299
1
Y
1
A
ASP
529
A
ASP
300
1
Y
1
A
GLU
530
A
GLU
301
1
Y
1
A
GLU
531
A
GLU
302
1
Y
1
A
THR
662
A
THR
433
1
Y
1
A
GLY
663
A
GLY
434
1
Y
1
A
ARG
664
A
ARG
435
1
Y
1
A
GLY
665
A
GLY
436
1
Y
1
A
LYS
666
A
LYS
437
1
Y
1
A
THR
667
A
THR
438
1
Y
1
A
ASN
668
A
ASN
439
1
Y
1
A
GLN
669
A
GLN
440
1
Y
1
A
ASN
670
A
ASN
441
1
Y
1
A
THR
671
A
THR
442
1
Y
1
A
GLY
672
A
GLY
443
1
Y
1
A
MET
673
A
MET
444
1
Y
1
A
THR
674
A
THR
445
1
Y
1
A
LEU
675
A
LEU
446
1
Y
1
A
PRO
676
A
PRO
447
1
Y
1
A
ALA
677
A
ALA
448
1
Y
1
A
GLN
678
A
GLN
449
1
Y
1
A
LYS
679
A
LYS
450
1
Y
1
A
CYS
680
A
CYS
451
1
Y
1
A
ILE
681
A
ILE
452
1
Y
1
A
LEU
682
A
LEU
453
1
Y
1
A
ASP
683
A
ASP
454
1
Y
1
A
ALA
684
A
ALA
455
1
Y
1
A
PHE
685
A
PHE
456
1
Y
1
A
LYS
686
A
LYS
457
1
Y
1
A
ALA
687
A
ALA
458
1
Y
1
A
SER
688
A
SER
459
1
Y
1
A
GLY
689
A
GLY
460
1
Y
1
A
ASP
690
A
ASP
461
1
Y
1
A
GLU
702
A
GLU
473
1
Y
1
A
GLY
703
A
GLY
474
1
Y
1
A
ILE
704
A
ILE
475
1
Y
1
A
ASP
705
A
ASP
476
1
Y
1
A
ILE
706
A
ILE
477
1
Y
1
A
LYS
723
A
LYS
494
1
Y
1
A
MET
724
A
MET
495
1
Y
1
A
ILE
725
A
ILE
496
1
Y
1
A
GLN
726
A
GLN
497
1
Y
1
A
THR
727
A
THR
498
1
Y
1
A
ARG
728
A
ARG
499
1
Y
1
A
GLY
729
A
GLY
500
1
Y
1
A
ARG
730
A
ARG
501
1
Y
1
A
GLY
731
A
GLY
502
1
Y
1
A
ARG
732
A
ARG
503
1
Y
1
A
GLU
922
A
GLU
693
1
Y
1
A
MET
923
A
MET
694
1
Y
1
A
SER
924
A
SER
695
1
Y
1
A
LYS
925
A
LYS
696
1
Y
1
-6.85
1.10
112.00
105.15
C
C
C
N1
C1'
C2'
C
C
C
2
2
2
N
1
-4.83
0.80
109.40
104.57
C
C
C
O5'
C5'
C4'
G
G
G
3
3
3
N
1
-7.43
1.00
102.60
95.17
C
C
C
C4'
C3'
C2'
C
C
C
6
6
6
N
1
-4.77
0.70
101.30
96.53
C
C
C
C3'
C2'
C1'
G
G
G
7
7
7
N
1
5.04
0.70
108.50
113.54
D
D
D
O4'
C1'
N1
C
C
C
4
4
4
N
1
5.44
0.70
108.50
113.94
D
D
D
O4'
C1'
N1
C
C
C
6
6
6
N
1
-4.86
0.60
119.90
115.04
D
D
D
N1
C6
O6
G
G
G
7
7
7
N
1
-7.31
1.00
102.60
95.29
D
D
D
C4'
C3'
C2'
C
C
C
8
8
8
N
1
A
LEU
237
80.53
-10.66
1
A
LEU
252
-28.39
-62.46
1
A
CYS
268
-28.63
-51.45
1
A
LYS
284
-55.01
-3.70
1
A
ALA
329
-56.09
-8.15
1
A
ASN
331
-151.11
69.59
1
A
HIS
375
-52.95
-9.40
1
A
LYS
379
53.11
-126.15
1
A
SER
411
-165.51
106.97
1
A
VAL
414
-156.39
6.29
1
A
LYS
443
-136.62
-45.01
1
A
GLU
450
-59.37
45.07
1
A
GLN
451
-161.69
-9.23
1
A
VAL
453
-162.82
62.94
1
A
LYS
455
76.36
46.85
1
A
VAL
463
-134.96
-156.32
1
A
CYS
490
-130.80
-54.65
1
A
LYS
491
66.84
-18.20
1
A
ALA
558
-117.17
-141.66
1
A
ALA
577
55.39
162.71
1
A
ILE
660
-135.30
-143.61
1
A
ASN
720
79.91
-14.19
1
A
ARG
734
172.13
144.80
1
A
GLU
795
-135.10
-49.71
1
A
LYS
796
81.89
138.46
1
A
VAL
800
-58.19
108.04
1
A
LYS
812
-79.40
-72.28
1
A
ALA
817
-107.38
-70.29
1
A
GLU
828
61.67
-2.25
1
A
LYS
839
-56.84
-8.46
1
A
PHE
853
-127.00
-131.07
1
A
SER
854
-20.37
-72.05
1
A
PHE
856
62.06
138.71
1
A
LYS
880
46.30
-106.14
1
A
PRO
917
-67.29
-174.38
1
A
ASP
919
177.21
-138.22
72.678
1.12
0.00
0.00
2.14
0.00
-3.26
0.938
0.889
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.27896
0.22155
0.22444
2.80
25.00
1102
20593
5.1
99.25
36.739
0.331
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.407
0.80
0.80
1.40
PDB ENTRY 2YKG
MAXIMUM LIKELIHOOD
MASK
2.80
25.00
9
5380
1
424
4946
0.013
0.022
5522
1.562
2.060
7571
6.947
5.000
627
39.485
24.612
219
22.208
15.000
876
18.967
15.000
21
0.099
0.200
877
0.006
0.021
3972
0.521
1.500
3157
1.015
2.000
5084
1.478
3.000
2365
2.364
4.500
2487
0.534
0.438
2.872
57
1515
20
98.31
2.80
48.00
3ZD6
21820
1.8
0.06
1
16.20
5
99.5
0.71
2.80
2.95
1.80
1
4.8
99.3
refinement
REFMAC
5.5.0109
phasing
PHASER
Snapshot 1 of RIG-I scanning on RNA duplex
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
ARG
244
A
ARG
15
HELX_P
A
LYS
256
A
LYS
27
1
1
13
A
GLY
267
A
GLY
38
HELX_P
A
LYS
284
A
LYS
55
1
2
18
A
GLN
299
A
GLN
70
HELX_P
A
ARG
316
A
ARG
87
1
3
18
A
THR
328
A
THR
99
HELX_P
A
VAL
332
A
VAL
103
5
4
5
A
PRO
333
A
PRO
104
HELX_P
A
ASN
340
A
ASN
111
1
5
8
A
THR
347
A
THR
118
HELX_P
A
LYS
357
A
LYS
128
1
6
11
A
SER
362
A
SER
133
HELX_P
A
PHE
366
A
PHE
137
5
7
5
A
GLU
373
A
GLU
144
HELX_P
A
THR
377
A
THR
148
5
8
5
A
HIS
381
A
HIS
152
HELX_P
A
GLY
396
A
GLY
167
1
9
16
A
ASN
419
A
ASN
190
HELX_P
A
ASP
435
A
ASP
206
1
10
17
A
ASN
445
A
ASN
216
HELX_P
A
GLU
450
A
GLU
221
1
11
6
A
PHE
471
A
PHE
242
HELX_P
A
ILE
489
A
ILE
260
1
12
19
A
ASP
492
A
ASP
263
HELX_P
A
SER
497
A
SER
268
5
13
6
A
THR
506
A
THR
277
HELX_P
A
CYS
520
A
CYS
291
1
14
15
A
SER
532
A
SER
303
HELX_P
A
ALA
558
A
ALA
329
1
15
27
A
ARG
559
A
ARG
330
HELX_P
A
ALA
576
A
ALA
347
1
16
18
A
ASP
580
A
ASP
351
HELX_P
A
ASP
603
A
ASP
374
1
17
24
A
PRO
604
A
PRO
375
HELX_P
A
GLU
607
A
GLU
378
5
18
4
A
ASN
608
A
ASN
379
HELX_P
A
ASN
625
A
ASN
396
1
19
18
A
THR
636
A
THR
407
HELX_P
A
GLY
649
A
GLY
420
1
20
14
A
ASN
744
A
ASN
515
HELX_P
A
GLN
769
A
GLN
540
1
21
26
A
ASP
772
A
ASP
543
HELX_P
A
GLN
794
A
GLN
565
1
22
23
A
GLY
835
A
GLY
606
HELX_P
A
GLU
840
A
GLU
611
1
23
6
disulf
2.074
A
CYS
520
A
SG
CYS
291
1_555
A
CYS
535
A
SG
CYS
306
1_555
metalc
2.371
A
CYS
810
A
SG
CYS
581
1_555
A
ZN
927
D
ZN
ZN
1_555
metalc
2.309
A
CYS
813
A
SG
CYS
584
1_555
A
ZN
927
D
ZN
ZN
1_555
metalc
2.318
A
CYS
864
A
SG
CYS
635
1_555
A
ZN
927
D
ZN
ZN
1_555
metalc
2.074
A
CYS
869
A
SG
CYS
640
1_555
A
ZN
927
D
ZN
ZN
1_555
hydrog
WATSON-CRICK
C
G
1
B
N1
G
1
1_555
D
C
10
C
N3
C
10
1_555
hydrog
WATSON-CRICK
C
G
1
B
N2
G
1
1_555
D
C
10
C
O2
C
10
1_555
hydrog
WATSON-CRICK
C
G
1
B
O6
G
1
1_555
D
C
10
C
N4
C
10
1_555
hydrog
WATSON-CRICK
C
C
2
B
N3
C
2
1_555
D
G
9
C
N1
G
9
1_555
hydrog
WATSON-CRICK
C
C
2
B
N4
C
2
1_555
D
G
9
C
O6
G
9
1_555
hydrog
WATSON-CRICK
C
C
2
B
O2
C
2
1_555
D
G
9
C
N2
G
9
1_555
hydrog
WATSON-CRICK
C
G
3
B
N1
G
3
1_555
D
C
8
C
N3
C
8
1_555
hydrog
WATSON-CRICK
C
G
3
B
N2
G
3
1_555
D
C
8
C
O2
C
8
1_555
hydrog
WATSON-CRICK
C
G
3
B
O6
G
3
1_555
D
C
8
C
N4
C
8
1_555
hydrog
WATSON-CRICK
C
C
4
B
N3
C
4
1_555
D
G
7
C
N1
G
7
1_555
hydrog
WATSON-CRICK
C
C
4
B
N4
C
4
1_555
D
G
7
C
O6
G
7
1_555
hydrog
WATSON-CRICK
C
C
4
B
O2
C
4
1_555
D
G
7
C
N2
G
7
1_555
hydrog
WATSON-CRICK
C
G
5
B
N1
G
5
1_555
D
C
6
C
N3
C
6
1_555
hydrog
WATSON-CRICK
C
G
5
B
N2
G
5
1_555
D
C
6
C
O2
C
6
1_555
hydrog
WATSON-CRICK
C
G
5
B
O6
G
5
1_555
D
C
6
C
N4
C
6
1_555
hydrog
WATSON-CRICK
C
C
6
B
N3
C
6
1_555
D
G
5
C
N1
G
5
1_555
hydrog
WATSON-CRICK
C
C
6
B
N4
C
6
1_555
D
G
5
C
O6
G
5
1_555
hydrog
WATSON-CRICK
C
C
6
B
O2
C
6
1_555
D
G
5
C
N2
G
5
1_555
hydrog
WATSON-CRICK
C
G
7
B
N1
G
7
1_555
D
C
4
C
N3
C
4
1_555
hydrog
WATSON-CRICK
C
G
7
B
N2
G
7
1_555
D
C
4
C
O2
C
4
1_555
hydrog
WATSON-CRICK
C
G
7
B
O6
G
7
1_555
D
C
4
C
N4
C
4
1_555
hydrog
WATSON-CRICK
C
C
8
B
N3
C
8
1_555
D
G
3
C
N1
G
3
1_555
hydrog
WATSON-CRICK
C
C
8
B
N4
C
8
1_555
D
G
3
C
O6
G
3
1_555
hydrog
WATSON-CRICK
C
C
8
B
O2
C
8
1_555
D
G
3
C
N2
G
3
1_555
hydrog
WATSON-CRICK
C
G
9
B
N1
G
9
1_555
D
C
2
C
N3
C
2
1_555
hydrog
WATSON-CRICK
C
G
9
B
N2
G
9
1_555
D
C
2
C
O2
C
2
1_555
hydrog
WATSON-CRICK
C
G
9
B
O6
G
9
1_555
D
C
2
C
N4
C
2
1_555
hydrog
WATSON-CRICK
C
C
10
B
N3
C
10
1_555
D
G
1
C
N1
G
1
1_555
hydrog
WATSON-CRICK
C
C
10
B
N4
C
10
1_555
D
G
1
C
O6
G
1
1_555
hydrog
WATSON-CRICK
C
C
10
B
O2
C
10
1_555
D
G
1
C
N2
G
1
1_555
HYDROLASE/RNA
HYDROLASE-RNA COMPLEX, INNATE IMMUNITY
A
SER
399
A
SER
170
1
A
GLY
400
A
GLY
171
-13.04
A
TYR
454
A
TYR
225
1
A
LYS
455
A
LYS
226
10.10
A
ALA
577
A
ALA
348
1
A
GLY
578
A
GLY
349
-12.25
A
VAL
718
A
VAL
489
1
A
GLY
719
A
GLY
490
-15.85
DDX58_HUMAN
UNP
1
O95786
3ZD6
PDB
2
3ZD6
185
880
3ZD6
230
925
O95786
A
1
1
696
1
10
3ZD6
1
10
3ZD6
C
2
1
10
1
10
3ZD6
1
10
3ZD6
D
2
1
10
1
GLN
conflict
ASN
287
3ZD6
A
O95786
UNP
242
58
1
GLN
conflict
ASN
306
3ZD6
A
O95786
UNP
261
77
1
ALA
conflict
LEU
696
3ZD6
A
O95786
UNP
651
467
7
6
4
2
4
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
321
A
VAL
92
A
ILE
324
A
ILE
95
A
ILE
343
A
ILE
114
A
LEU
346
A
LEU
117
A
VAL
293
A
VAL
64
A
PHE
296
A
PHE
67
A
LEU
368
A
LEU
139
A
PHE
371
A
PHE
142
A
GLN
404
A
GLN
175
A
THR
409
A
THR
180
A
THR
260
A
THR
31
A
CYS
263
A
CYS
34
A
VAL
438
A
VAL
209
A
ALA
440
A
ALA
211
A
GLN
457
A
GLN
228
A
LYS
462
A
LYS
233
A
LYS
737
A
LYS
508
A
THR
742
A
THR
513
A
LEU
711
A
LEU
482
A
TYR
715
A
TYR
486
A
THR
630
A
THR
401
A
PHE
633
A
PHE
404
A
ILE
695
A
ILE
466
A
SER
698
A
SER
469
A
PRO
658
A
PRO
429
A
GLY
659
A
GLY
430
A
LEU
816
A
LEU
587
A
TYR
819
A
TYR
590
A
LYS
806
A
LYS
577
A
CYS
810
A
CYS
581
A
PHE
892
A
PHE
663
A
ASP
896
A
ASP
667
A
GLN
902
A
GLN
673
A
LEU
904
A
LEU
675
A
VAL
823
A
VAL
594
A
ILE
826
A
ILE
597
A
HIS
830
A
HIS
601
A
VAL
833
A
VAL
604
A
PHE
842
A
PHE
613
A
VAL
843
A
VAL
614
A
GLU
857
A
GLU
628
A
CYS
864
A
CYS
635
A
ASP
872
A
ASP
643
A
TYR
879
A
TYR
650
A
PHE
882
A
PHE
653
A
ILE
887
A
ILE
658
BINDING SITE FOR RESIDUE ZN A 927
A
ZN
927
Software
4
A
CYS
810
A
CYS
581
4
1_555
A
CYS
813
A
CYS
584
4
1_555
A
CYS
864
A
CYS
635
4
1_555
A
CYS
869
A
CYS
640
4
1_555
19
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