0.013748 0.007937 0.000000 0.000000 0.015874 0.000000 0.000000 0.000000 0.005025 0.00000 0.00000 0.00000 Li, D. Vogeley, L. Pye, V.E. Lyons, J.A. 0000-0002-6551-4657 Aragao, D. Caffrey, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 72.740 72.740 198.990 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N O N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 R C N 289 N O N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N N Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N C N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing Y 298 N doub Y 299 N sing Y 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N sing Y 307 N doub N 308 N sing Y 309 N doub N 310 N sing Y 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing UK Nature NATUAS 0006 0028-0836 497 521 10.1038/NATURE12179 23676677 Crystal Structure of the Integral Membrane Diacylglycerol Kinase. 2013 10.2210/pdb3ze5/pdb pdb_00003ze5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRRORS PIXEL 2010-12-11 DECTRIS PILATUS 6M DOUBLE CRYSTAL SINGLE WAVELENGTH M x-ray 1 0.9778 1.0 I24 Diamond 0.9778 SYNCHROTRON DIAMOND BEAMLINE I24 14240.527 DIACYLGLYCEROL KINASE 2.7.1.107 YES 3 man polymer DAGK, DIGLYCERIDE KINASE, DGK no no GHHHHHHELANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELL NSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSHFG GHHHHHHELANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELL NSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSHFG A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample THE GENE WAS SYNTHESIZED BASED ON THE DGKA NUCLEOTIDE SEQUENCE OF ESCHERICHIA COLI K12, WITH ADDITIONAL NUCLEOTIDES ENCODING HIS TAG SEQUENCES AT THE N- TERMINUS. SITE-DIRECTED MUTATIONS WERE MADE USING PCR. 83333 ESCHERICHIA COLI K-12 562 ESCHERICHIA COLI WH1061 PTRCHISB PLASMID PTRCHISB-DGKA_DELTA4 1 3.56 65.49 NONE LIPIDIC CUBIC PHASE 5.6 3-5 %(V/V) 2-METHYL-2, 4-PENTANEDIOL, 0.1 M SODIUM CHLORIDE, 0.1 M LITHIUM NITRATE, 0.1 M SODIUM CITRATE/HCL PH 5.6. CRYSTALLIZED USING THE IN MESO (LIPIDIC CUBIC PHASE) METHOD AT 4 DEGREE CELSIUS WITH THE 7.8 MONOACYLGLYCEROL (7.8 MAG) AS THE HOSTING LIPID. 277 exptl_crystal_grow pdbx_database_proc pdbx_database_status exptl_crystal_grow audit_author database_2 pdbx_database_status chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Database references Database references Data collection Experimental preparation Other Data collection Experimental preparation Database references Other Structure summary Data collection Refinement description 1 0 2013-05-22 1 1 2013-05-29 1 2 2013-06-05 1 3 2019-03-06 1 4 2019-04-03 1 5 2023-03-29 1 6 2024-02-07 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _exptl_crystal_grow.temp _audit_author.identifier_ORCID _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL KINASE - DELTA7 CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL KINASE - WILD-TYPE PDBE Y PDBE 2012-12-03 REL REL THE CONSTRUCT CONTAINS AN N-TERMIANL HIS TAG 'GHHHHHHEL'. COMPARED TO THE WILDTYPE FORM, THE PROTEIN HAS SEVEN MUTATIONS. THEY ARE I53C, I70L, M96L AND V107D. 3ZE3 PDB ENTRY 3ZE3 PDB experimental model n 1 -8 A n 2 -7 A n 3 -6 A n 4 -5 A n 5 -4 A n 6 -3 A n 7 -2 A n 8 -1 A n 9 0 A n 10 1 A n 11 2 A n 12 3 A n 13 4 A n 14 5 A n 15 6 A PHE 7 n 16 PHE 7 A THR 8 n 17 THR 8 A ARG 9 n 18 ARG 9 A ILE 10 n 19 ILE 10 A ILE 11 n 20 ILE 11 A LYS 12 n 21 LYS 12 A ALA 13 n 22 ALA 13 A ALA 14 n 23 ALA 14 A GLY 15 n 24 GLY 15 A TYR 16 n 25 TYR 16 A SER 17 n 26 SER 17 A TRP 18 n 27 TRP 18 A LYS 19 n 28 LYS 19 A GLY 20 n 29 GLY 20 A LEU 21 n 30 LEU 21 A ARG 22 n 31 ARG 22 A ALA 23 n 32 ALA 23 A ALA 24 n 33 ALA 24 A TRP 25 n 34 TRP 25 A ILE 26 n 35 ILE 26 A ASN 27 n 36 ASN 27 A GLU 28 n 37 GLU 28 A ALA 29 n 38 ALA 29 A ALA 30 n 39 ALA 30 A PHE 31 n 40 PHE 31 A ARG 32 n 41 ARG 32 A GLN 33 n 42 GLN 33 A GLU 34 n 43 GLU 34 A GLY 35 n 44 GLY 35 A VAL 36 n 45 VAL 36 A ALA 37 n 46 ALA 37 A VAL 38 n 47 VAL 38 A LEU 39 n 48 LEU 39 A LEU 40 n 49 LEU 40 A ALA 41 n 50 ALA 41 A VAL 42 n 51 VAL 42 A VAL 43 n 52 VAL 43 A ILE 44 n 53 ILE 44 A ALA 45 n 54 ALA 45 A CYS 46 n 55 CYS 46 A TRP 47 n 56 TRP 47 A LEU 48 n 57 LEU 48 A ASP 49 n 58 ASP 49 A VAL 50 n 59 VAL 50 A ASP 51 n 60 ASP 51 A ALA 52 n 61 ALA 52 A CYS 53 n 62 CYS 53 A THR 54 n 63 THR 54 A ARG 55 n 64 ARG 55 A VAL 56 n 65 VAL 56 A LEU 57 n 66 LEU 57 A LEU 58 n 67 LEU 58 A ILE 59 n 68 ILE 59 A SER 60 n 69 SER 60 A SER 61 n 70 SER 61 A VAL 62 n 71 VAL 62 A MET 63 n 72 MET 63 A LEU 64 n 73 LEU 64 A VAL 65 n 74 VAL 65 A MET 66 n 75 MET 66 A ILE 67 n 76 ILE 67 A VAL 68 n 77 VAL 68 A GLU 69 n 78 GLU 69 A LEU 70 n 79 LEU 70 A LEU 71 n 80 LEU 71 A ASN 72 n 81 ASN 72 A SER 73 n 82 SER 73 A ALA 74 n 83 ALA 74 A ILE 75 n 84 ILE 75 A GLU 76 n 85 GLU 76 A ALA 77 n 86 ALA 77 A VAL 78 n 87 VAL 78 A VAL 79 n 88 VAL 79 A ASP 80 n 89 ASP 80 A ARG 81 n 90 ARG 81 A ILE 82 n 91 ILE 82 A GLY 83 n 92 GLY 83 A SER 84 n 93 SER 84 A GLU 85 n 94 GLU 85 A TYR 86 n 95 TYR 86 A HIS 87 n 96 HIS 87 A GLU 88 n 97 GLU 88 A LEU 89 n 98 LEU 89 A SER 90 n 99 SER 90 A GLY 91 n 100 GLY 91 A ARG 92 n 101 ARG 92 A ALA 93 n 102 ALA 93 A LYS 94 n 103 LYS 94 A ASP 95 n 104 ASP 95 A LEU 96 n 105 LEU 96 A GLY 97 n 106 GLY 97 A SER 98 n 107 SER 98 A ALA 99 n 108 ALA 99 A ALA 100 n 109 ALA 100 A VAL 101 n 110 VAL 101 A LEU 102 n 111 LEU 102 A ILE 103 n 112 ILE 103 A ALA 104 n 113 ALA 104 A ILE 105 n 114 ILE 105 A ILE 106 n 115 ILE 106 A ASP 107 n 116 ASP 107 A ALA 108 n 117 ALA 108 A VAL 109 n 118 VAL 109 A ILE 110 n 119 ILE 110 A THR 111 n 120 THR 111 A TRP 112 n 121 TRP 112 A CYS 113 n 122 CYS 113 A ILE 114 n 123 ILE 114 A LEU 115 n 124 LEU 115 A LEU 116 n 125 LEU 116 A TRP 117 n 126 TRP 117 A SER 118 n 127 SER 118 A HIS 119 n 128 HIS 119 A PHE 120 n 129 PHE 120 A GLY 121 n 130 GLY 121 A n 1 -8 B n 2 -7 B n 3 -6 B n 4 -5 B n 5 -4 B n 6 -3 B n 7 -2 B n 8 -1 B n 9 0 B n 10 1 B n 11 2 B n 12 3 B n 13 4 B n 14 5 B GLY 6 n 15 GLY 6 B PHE 7 n 16 PHE 7 B THR 8 n 17 THR 8 B ARG 9 n 18 ARG 9 B ILE 10 n 19 ILE 10 B ILE 11 n 20 ILE 11 B LYS 12 n 21 LYS 12 B ALA 13 n 22 ALA 13 B ALA 14 n 23 ALA 14 B GLY 15 n 24 GLY 15 B TYR 16 n 25 TYR 16 B SER 17 n 26 SER 17 B TRP 18 n 27 TRP 18 B LYS 19 n 28 LYS 19 B GLY 20 n 29 GLY 20 B LEU 21 n 30 LEU 21 B ARG 22 n 31 ARG 22 B ALA 23 n 32 ALA 23 B ALA 24 n 33 ALA 24 B TRP 25 n 34 TRP 25 B ILE 26 n 35 ILE 26 B ASN 27 n 36 ASN 27 B GLU 28 n 37 GLU 28 B ALA 29 n 38 ALA 29 B ALA 30 n 39 ALA 30 B PHE 31 n 40 PHE 31 B ARG 32 n 41 ARG 32 B GLN 33 n 42 GLN 33 B GLU 34 n 43 GLU 34 B GLY 35 n 44 GLY 35 B VAL 36 n 45 VAL 36 B ALA 37 n 46 ALA 37 B VAL 38 n 47 VAL 38 B LEU 39 n 48 LEU 39 B LEU 40 n 49 LEU 40 B ALA 41 n 50 ALA 41 B VAL 42 n 51 VAL 42 B VAL 43 n 52 VAL 43 B ILE 44 n 53 ILE 44 B ALA 45 n 54 ALA 45 B CYS 46 n 55 CYS 46 B TRP 47 n 56 TRP 47 B LEU 48 n 57 LEU 48 B ASP 49 n 58 ASP 49 B VAL 50 n 59 VAL 50 B ASP 51 n 60 ASP 51 B ALA 52 n 61 ALA 52 B CYS 53 n 62 CYS 53 B THR 54 n 63 THR 54 B ARG 55 n 64 ARG 55 B VAL 56 n 65 VAL 56 B LEU 57 n 66 LEU 57 B LEU 58 n 67 LEU 58 B ILE 59 n 68 ILE 59 B SER 60 n 69 SER 60 B SER 61 n 70 SER 61 B VAL 62 n 71 VAL 62 B MET 63 n 72 MET 63 B LEU 64 n 73 LEU 64 B VAL 65 n 74 VAL 65 B MET 66 n 75 MET 66 B ILE 67 n 76 ILE 67 B VAL 68 n 77 VAL 68 B GLU 69 n 78 GLU 69 B LEU 70 n 79 LEU 70 B LEU 71 n 80 LEU 71 B ASN 72 n 81 ASN 72 B SER 73 n 82 SER 73 B ALA 74 n 83 ALA 74 B ILE 75 n 84 ILE 75 B GLU 76 n 85 GLU 76 B ALA 77 n 86 ALA 77 B VAL 78 n 87 VAL 78 B VAL 79 n 88 VAL 79 B ASP 80 n 89 ASP 80 B ARG 81 n 90 ARG 81 B ILE 82 n 91 ILE 82 B GLY 83 n 92 GLY 83 B SER 84 n 93 SER 84 B GLU 85 n 94 GLU 85 B TYR 86 n 95 TYR 86 B HIS 87 n 96 HIS 87 B GLU 88 n 97 GLU 88 B LEU 89 n 98 LEU 89 B SER 90 n 99 SER 90 B GLY 91 n 100 GLY 91 B ARG 92 n 101 ARG 92 B ALA 93 n 102 ALA 93 B LYS 94 n 103 LYS 94 B ASP 95 n 104 ASP 95 B LEU 96 n 105 LEU 96 B GLY 97 n 106 GLY 97 B SER 98 n 107 SER 98 B ALA 99 n 108 ALA 99 B ALA 100 n 109 ALA 100 B VAL 101 n 110 VAL 101 B LEU 102 n 111 LEU 102 B ILE 103 n 112 ILE 103 B ALA 104 n 113 ALA 104 B ILE 105 n 114 ILE 105 B ILE 106 n 115 ILE 106 B ASP 107 n 116 ASP 107 B ALA 108 n 117 ALA 108 B VAL 109 n 118 VAL 109 B ILE 110 n 119 ILE 110 B THR 111 n 120 THR 111 B TRP 112 n 121 TRP 112 B CYS 113 n 122 CYS 113 B ILE 114 n 123 ILE 114 B LEU 115 n 124 LEU 115 B LEU 116 n 125 LEU 116 B TRP 117 n 126 TRP 117 B SER 118 n 127 SER 118 B HIS 119 n 128 HIS 119 B PHE 120 n 129 PHE 120 B GLY 121 n 130 GLY 121 B n 1 -8 C n 2 -7 C n 3 -6 C n 4 -5 C n 5 -4 C n 6 -3 C n 7 -2 C n 8 -1 C n 9 0 C n 10 1 C n 11 2 C n 12 3 C n 13 4 C n 14 5 C n 15 6 C n 16 7 C n 17 8 C n 18 9 C n 19 10 C n 20 11 C n 21 12 C n 22 13 C n 23 14 C n 24 15 C TYR 16 n 25 TYR 16 C SER 17 n 26 SER 17 C TRP 18 n 27 TRP 18 C LYS 19 n 28 LYS 19 C GLY 20 n 29 GLY 20 C LEU 21 n 30 LEU 21 C ARG 22 n 31 ARG 22 C ALA 23 n 32 ALA 23 C ALA 24 n 33 ALA 24 C TRP 25 n 34 TRP 25 C ILE 26 n 35 ILE 26 C ASN 27 n 36 ASN 27 C GLU 28 n 37 GLU 28 C ALA 29 n 38 ALA 29 C ALA 30 n 39 ALA 30 C PHE 31 n 40 PHE 31 C ARG 32 n 41 ARG 32 C GLN 33 n 42 GLN 33 C GLU 34 n 43 GLU 34 C GLY 35 n 44 GLY 35 C VAL 36 n 45 VAL 36 C ALA 37 n 46 ALA 37 C VAL 38 n 47 VAL 38 C LEU 39 n 48 LEU 39 C LEU 40 n 49 LEU 40 C ALA 41 n 50 ALA 41 C VAL 42 n 51 VAL 42 C VAL 43 n 52 VAL 43 C ILE 44 n 53 ILE 44 C ALA 45 n 54 ALA 45 C CYS 46 n 55 CYS 46 C TRP 47 n 56 TRP 47 C LEU 48 n 57 LEU 48 C ASP 49 n 58 ASP 49 C VAL 50 n 59 VAL 50 C ASP 51 n 60 ASP 51 C ALA 52 n 61 ALA 52 C CYS 53 n 62 CYS 53 C THR 54 n 63 THR 54 C ARG 55 n 64 ARG 55 C VAL 56 n 65 VAL 56 C LEU 57 n 66 LEU 57 C LEU 58 n 67 LEU 58 C ILE 59 n 68 ILE 59 C SER 60 n 69 SER 60 C SER 61 n 70 SER 61 C VAL 62 n 71 VAL 62 C MET 63 n 72 MET 63 C LEU 64 n 73 LEU 64 C VAL 65 n 74 VAL 65 C MET 66 n 75 MET 66 C ILE 67 n 76 ILE 67 C VAL 68 n 77 VAL 68 C GLU 69 n 78 GLU 69 C LEU 70 n 79 LEU 70 C LEU 71 n 80 LEU 71 C ASN 72 n 81 ASN 72 C SER 73 n 82 SER 73 C ALA 74 n 83 ALA 74 C ILE 75 n 84 ILE 75 C GLU 76 n 85 GLU 76 C ALA 77 n 86 ALA 77 C VAL 78 n 87 VAL 78 C VAL 79 n 88 VAL 79 C ASP 80 n 89 ASP 80 C ARG 81 n 90 ARG 81 C ILE 82 n 91 ILE 82 C GLY 83 n 92 GLY 83 C SER 84 n 93 SER 84 C GLU 85 n 94 GLU 85 C TYR 86 n 95 TYR 86 C HIS 87 n 96 HIS 87 C GLU 88 n 97 GLU 88 C LEU 89 n 98 LEU 89 C SER 90 n 99 SER 90 C GLY 91 n 100 GLY 91 C ARG 92 n 101 ARG 92 C ALA 93 n 102 ALA 93 C LYS 94 n 103 LYS 94 C ASP 95 n 104 ASP 95 C LEU 96 n 105 LEU 96 C GLY 97 n 106 GLY 97 C SER 98 n 107 SER 98 C ALA 99 n 108 ALA 99 C ALA 100 n 109 ALA 100 C VAL 101 n 110 VAL 101 C LEU 102 n 111 LEU 102 C ILE 103 n 112 ILE 103 C ALA 104 n 113 ALA 104 C ILE 105 n 114 ILE 105 C ILE 106 n 115 ILE 106 C ASP 107 n 116 ASP 107 C ALA 108 n 117 ALA 108 C VAL 109 n 118 VAL 109 C ILE 110 n 119 ILE 110 C THR 111 n 120 THR 111 C TRP 112 n 121 TRP 112 C CYS 113 n 122 CYS 113 C ILE 114 n 123 ILE 114 C LEU 115 n 124 LEU 115 C LEU 116 n 125 LEU 116 C TRP 117 n 126 TRP 117 C SER 118 n 127 SER 118 C HIS 119 n 128 HIS 119 C n 129 120 C n 130 121 C 6.7375 -0.1997 1.7108 6.4283 -0.8498 7.5054 0.6002 0.8341 0.0184 -0.7234 -0.2648 1.0751 0.5833 -1.2393 -0.0274 0.9823 0.2043 0.1509 0.7065 -0.0303 0.5143 refined -61.0479 17.1927 17.7453 X-RAY DIFFRACTION 6.2875 2.2101 -0.4583 1.8088 -0.5221 1.7929 -0.2139 -1.1370 -0.9156 0.4380 -0.1173 -0.1626 -0.0751 -0.1518 0.1594 1.0868 0.5450 0.0688 0.5585 0.2482 0.2587 refined -52.7384 16.3086 37.6905 X-RAY DIFFRACTION 6.7359 2.6712 -2.0528 3.9521 -0.3264 0.7138 -0.7802 1.0356 -1.1753 -1.6105 -0.0054 0.3321 0.9406 0.1463 -0.0729 1.2757 0.3777 0.1508 0.6933 -0.0428 0.4650 refined -49.4676 16.6468 9.5906 X-RAY DIFFRACTION 2.9587 -0.9500 -0.6423 2.4012 -0.5324 3.3572 -0.3001 0.1673 -0.2405 -0.1250 0.0903 -0.0083 0.4414 0.7159 -0.6819 0.9734 0.6828 0.1401 0.8858 0.1709 0.7439 refined -41.5801 14.3152 24.4715 X-RAY DIFFRACTION 5.6942 -0.0425 1.0075 4.4692 1.8269 2.5238 0.0507 -0.2683 -0.1330 -0.9983 0.4350 -0.1345 -1.5349 1.0848 -0.3650 1.0728 0.0478 0.2603 1.5595 0.3081 0.6106 refined -40.6423 39.1569 13.6237 X-RAY DIFFRACTION 2.0920 -1.4895 1.0035 2.4586 -1.3521 2.1452 0.3493 0.5452 0.2185 -0.8073 -0.0680 0.2240 -0.5254 -0.2500 0.1494 1.4169 0.8730 0.0256 0.4889 0.0226 0.7076 refined -52.9680 38.1207 31.7167 X-RAY DIFFRACTION 2.8531 -0.7375 -1.2349 1.0499 0.4407 3.8548 -0.5050 0.7344 -0.5397 0.1819 -0.2774 0.6901 0.0666 -0.2075 -0.6337 0.9506 0.5279 0.0288 0.7693 0.1922 0.3771 refined -52.7008 26.4451 15.1968 X-RAY DIFFRACTION 4.3742 3.3679 0.2661 5.5745 0.9352 5.5847 -0.0586 -1.4130 1.2656 1.5845 -0.4533 0.8268 -0.4077 -0.6089 -0.5343 1.0526 0.6367 0.3515 0.6251 -0.5840 -0.0369 refined -57.7638 28.5108 39.1829 X-RAY DIFFRACTION 4.2866 3.6840 4.4055 5.5935 6.5525 7.6672 1.4746 0.5423 0.5055 0.7455 0.4337 -0.1927 0.5241 1.4514 -0.5984 1.4883 -0.0616 -0.1598 1.4737 0.5751 1.1817 refined -31.6306 14.1805 15.5044 X-RAY DIFFRACTION 3.7731 0.7225 -1.8757 4.0799 2.5888 3.3573 -0.7839 0.4504 -0.5830 -0.1173 0.6147 -0.2039 -0.3585 1.9551 -0.2155 1.2014 0.3472 -0.0475 1.8005 0.1421 0.9830 refined -31.0151 23.9032 31.2530 X-RAY DIFFRACTION 3.4215 0.1935 1.0824 3.6715 -0.0194 1.0056 0.1098 0.0799 -0.6092 0.0633 0.0167 0.5791 0.3912 2.1987 -0.1309 0.9201 0.3522 -0.0363 1.1838 0.0732 0.5333 refined -38.7041 24.1405 29.8521 X-RAY DIFFRACTION 5.6099 -0.0395 0.4214 4.6034 1.4979 7.0582 -0.5678 0.6078 -0.1093 -0.0347 -0.0110 -0.7054 -0.3039 2.5359 -0.3574 0.6976 0.1838 0.0543 0.6130 0.0981 0.5770 refined -40.6545 30.6671 16.9583 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (CHAIN A AND RESID 7:36) X-RAY DIFFRACTION 2 (CHAIN A AND RESID 37:65) X-RAY DIFFRACTION 3 (CHAIN A AND RESID 66:85) X-RAY DIFFRACTION 4 (CHAIN A AND RESID 86:121) X-RAY DIFFRACTION 5 (CHAIN B AND RESID 5:29) X-RAY DIFFRACTION 6 (CHAIN B AND RESID 30:53) X-RAY DIFFRACTION 7 (CHAIN B AND RESID 54:106) X-RAY DIFFRACTION 8 (CHAIN B AND RESID 107:120) X-RAY DIFFRACTION 9 (CHAIN C AND RESID 15:26) X-RAY DIFFRACTION 10 (CHAIN C AND RESID 27:53) X-RAY DIFFRACTION 11 (CHAIN C AND RESID 54:69) X-RAY DIFFRACTION 12 (CHAIN C AND RESID 70:120) author_and_software_defined_assembly PISA 3 trimeric 8070 -93.7 16250 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY -8 A GLY 1 1 Y 1 A HIS -7 A HIS 2 1 Y 1 A HIS -6 A HIS 3 1 Y 1 A HIS -5 A HIS 4 1 Y 1 A HIS -4 A HIS 5 1 Y 1 A HIS -3 A HIS 6 1 Y 1 A HIS -2 A HIS 7 1 Y 1 A GLU -1 A GLU 8 1 Y 1 A LEU 0 A LEU 9 1 Y 1 A ALA 1 A ALA 10 1 Y 1 A ASN 2 A ASN 11 1 Y 1 A ASN 3 A ASN 12 1 Y 1 A THR 4 A THR 13 1 Y 1 A THR 5 A THR 14 1 Y 1 A GLY 6 A GLY 15 1 Y 1 B GLY -8 B GLY 1 1 Y 1 B HIS -7 B HIS 2 1 Y 1 B HIS -6 B HIS 3 1 Y 1 B HIS -5 B HIS 4 1 Y 1 B HIS -4 B HIS 5 1 Y 1 B HIS -3 B HIS 6 1 Y 1 B HIS -2 B HIS 7 1 Y 1 B GLU -1 B GLU 8 1 Y 1 B LEU 0 B LEU 9 1 Y 1 B ALA 1 B ALA 10 1 Y 1 B ASN 2 B ASN 11 1 Y 1 B ASN 3 B ASN 12 1 Y 1 B THR 4 B THR 13 1 Y 1 B THR 5 B THR 14 1 Y 1 C GLY -8 C GLY 1 1 Y 1 C HIS -7 C HIS 2 1 Y 1 C HIS -6 C HIS 3 1 Y 1 C HIS -5 C HIS 4 1 Y 1 C HIS -4 C HIS 5 1 Y 1 C HIS -3 C HIS 6 1 Y 1 C HIS -2 C HIS 7 1 Y 1 C GLU -1 C GLU 8 1 Y 1 C LEU 0 C LEU 9 1 Y 1 C ALA 1 C ALA 10 1 Y 1 C ASN 2 C ASN 11 1 Y 1 C ASN 3 C ASN 12 1 Y 1 C THR 4 C THR 13 1 Y 1 C THR 5 C THR 14 1 Y 1 C GLY 6 C GLY 15 1 Y 1 C PHE 7 C PHE 16 1 Y 1 C THR 8 C THR 17 1 Y 1 C ARG 9 C ARG 18 1 Y 1 C ILE 10 C ILE 19 1 Y 1 C ILE 11 C ILE 20 1 Y 1 C LYS 12 C LYS 21 1 Y 1 C ALA 13 C ALA 22 1 Y 1 C ALA 14 C ALA 23 1 Y 1 C GLY 15 C GLY 24 1 Y 1 C PHE 120 C PHE 129 1 Y 1 C GLY 121 C GLY 130 1 Y 111.88 THE 3-FOLD SYMMETRY BETWEEN CHAINS A, B AND C WAS NOT HELPFUL FOR REFINEMENT AND THEREFORE NOT USED. 0.2581 0.2320 0.2335 3.101 45.678 526 10990 4.8 94.00 0.45 1 1.34 MOLECULAR REPLACEMENT 32.81 0.90 1.11 PDB ENTRY 3ZE3 ML FLAT BULK SOLVENT MODEL 3.101 45.678 0 2569 0 0 2569 0.003 2615 0.540 3565 12.199 886 0.036 441 0.002 427 0.3836 0.2996 3.4125 134 2474 91.00 0.2878 0.2408 3.9061 111 2571 94.00 0.2310 0.1961 4.9203 132 2669 96.00 0.2491 0.2415 45.6825 149 2750 95.00 107.84 3.10 60.05 3ZE5 11008 -3.0 0.06 1 9.90 2.9 95.0 0.60 3.10 3.18 2.10 1 2.8 90.9 refinement PHENIX (PHENIX.REFINE) data reduction XDS data scaling XSCALE phasing PHASER Crystal structure of the integral membrane diacylglycerol kinase - delta4 1 N N 1 N N 1 N N A PHE 7 A PHE 16 HELX_P A GLU 28 A GLU 37 1 1 22 A GLU 28 A GLU 37 HELX_P A LEU 48 A LEU 57 1 2 21 A ASP 51 A ASP 60 HELX_P A HIS 87 A HIS 96 1 3 37 A GLY 91 A GLY 100 HELX_P A PHE 120 A PHE 129 1 4 30 B PHE 7 B PHE 16 HELX_P B GLU 28 B GLU 37 1 5 22 B GLU 28 B GLU 37 HELX_P B CYS 46 B CYS 55 1 6 19 B ASP 51 B ASP 60 HELX_P B TYR 86 B TYR 95 1 7 36 B GLY 91 B GLY 100 HELX_P B PHE 120 B PHE 129 1 8 30 C TYR 16 C TYR 25 HELX_P C GLU 28 C GLU 37 1 9 13 C GLU 28 C GLU 37 HELX_P C LEU 48 C LEU 57 1 10 21 C ASP 51 C ASP 60 HELX_P C GLY 83 C GLY 92 1 11 33 C HIS 87 C HIS 96 HELX_P C HIS 119 C HIS 128 1 12 33 TRANSFERASE TRANSFERASE, CLLD, LIPID METABOLISM, IN MESO CRYSTALLISATION, LIPID CUBIC PHASE, LIPIDIC MESOPHASE, THERMOSTABLE MUTANT, MONOACYLGLYCEROL, 7.8 MAG KDGL_ECOLI UNP 1 P0ABN1 2 122 3ZE5 1 121 P0ABN1 A 1 10 130 2 122 3ZE5 1 121 P0ABN1 B 1 10 130 2 122 3ZE5 1 121 P0ABN1 C 1 10 130 1 expression tag GLY -8 3ZE5 A P0ABN1 UNP 1 1 expression tag HIS -7 3ZE5 A P0ABN1 UNP 2 1 expression tag HIS -6 3ZE5 A P0ABN1 UNP 3 1 expression tag HIS -5 3ZE5 A P0ABN1 UNP 4 1 expression tag HIS -4 3ZE5 A P0ABN1 UNP 5 1 expression tag HIS -3 3ZE5 A P0ABN1 UNP 6 1 expression tag HIS -2 3ZE5 A P0ABN1 UNP 7 1 expression tag GLU -1 3ZE5 A P0ABN1 UNP 8 1 expression tag LEU 0 3ZE5 A P0ABN1 UNP 9 1 ILE engineered mutation CYS 53 3ZE5 A P0ABN1 UNP 54 62 1 ILE engineered mutation LEU 70 3ZE5 A P0ABN1 UNP 71 79 1 MET engineered mutation LEU 96 3ZE5 A P0ABN1 UNP 97 105 1 VAL engineered mutation ASP 107 3ZE5 A P0ABN1 UNP 108 116 2 expression tag GLY -8 3ZE5 B P0ABN1 UNP 1 2 expression tag HIS -7 3ZE5 B P0ABN1 UNP 2 2 expression tag HIS -6 3ZE5 B P0ABN1 UNP 3 2 expression tag HIS -5 3ZE5 B P0ABN1 UNP 4 2 expression tag HIS -4 3ZE5 B P0ABN1 UNP 5 2 expression tag HIS -3 3ZE5 B P0ABN1 UNP 6 2 expression tag HIS -2 3ZE5 B P0ABN1 UNP 7 2 expression tag GLU -1 3ZE5 B P0ABN1 UNP 8 2 expression tag LEU 0 3ZE5 B P0ABN1 UNP 9 2 ILE engineered mutation CYS 53 3ZE5 B P0ABN1 UNP 54 62 2 ILE engineered mutation LEU 70 3ZE5 B P0ABN1 UNP 71 79 2 MET engineered mutation LEU 96 3ZE5 B P0ABN1 UNP 97 105 2 VAL engineered mutation ASP 107 3ZE5 B P0ABN1 UNP 108 116 3 expression tag GLY -8 3ZE5 C P0ABN1 UNP 1 3 expression tag HIS -7 3ZE5 C P0ABN1 UNP 2 3 expression tag HIS -6 3ZE5 C P0ABN1 UNP 3 3 expression tag HIS -5 3ZE5 C P0ABN1 UNP 4 3 expression tag HIS -4 3ZE5 C P0ABN1 UNP 5 3 expression tag HIS -3 3ZE5 C P0ABN1 UNP 6 3 expression tag HIS -2 3ZE5 C P0ABN1 UNP 7 3 expression tag GLU -1 3ZE5 C P0ABN1 UNP 8 3 expression tag LEU 0 3ZE5 C P0ABN1 UNP 9 3 ILE engineered mutation CYS 53 3ZE5 C P0ABN1 UNP 54 62 3 ILE engineered mutation LEU 70 3ZE5 C P0ABN1 UNP 71 79 3 MET engineered mutation LEU 96 3ZE5 C P0ABN1 UNP 97 105 3 VAL engineered mutation ASP 107 3ZE5 C P0ABN1 UNP 108 116 152 P 31 2 1