0.009000 0.005196 0.000000 0.000000 0.010393 0.000000 0.000000 0.000000 0.007932 0.00000 0.00000 0.00000 Vinothkumar, K.R. voskya, O. Kuettler, E.V. Brouwer, A.J. Liskamp, R.M.J. Verhelst, S.H.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 111.109 111.109 126.067 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C15 H30 O6 306.395 n nonyl beta-D-glucopyranoside Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside D-saccharide Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C17 H17 N O3 283.322 2-phenylethyl 2-(4-azanyl-2-methanoyl-phenyl)ethanoate non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 R C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N C N 81 N C N 82 N C N 83 N C N 84 N C N 85 N C N 86 N C N 87 N C N 88 N C N 89 N O N 90 N O N 91 N O N 92 N O N 93 N O N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N CL N 126 N N N 127 R C N 128 N C N 129 N O N 130 N C N 131 N S N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 N C N 181 N C N 182 N O N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N O N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 S C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N C N 264 N C N 265 N N N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N C N 288 N S N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N C N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N O N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N O N 357 N C N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C N 363 N N Y 364 N C Y 365 N C N 366 N C N 367 N O N 368 N O N 369 N C N 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 R C N 399 N O N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N N Y 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N N N 439 S C N 440 N C N 441 N O N 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C Y 448 N C N 449 N O N 450 N O N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C N 467 N C N 468 N C N 469 N O N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing Y 191 N sing Y 192 N doub Y 193 N doub N 194 N sing Y 195 N sing N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing Y 299 N doub Y 300 N sing Y 301 N sing N 302 N sing Y 303 N doub N 304 N sing Y 305 N doub N 306 N sing Y 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing Y 345 N sing Y 346 N doub Y 347 N doub Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing Y 357 N sing Y 358 N doub Y 359 N doub Y 360 N sing Y 361 N doub Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing Y 407 N doub Y 408 N sing Y 409 N sing N 410 N sing Y 411 N doub Y 412 N sing Y 413 N sing N 414 N sing Y 415 N sing Y 416 N doub N 417 N sing Y 418 N doub N 419 N sing Y 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N doub N 431 N sing N 432 N sing N 433 N sing N 434 N sing Y 435 N doub Y 436 N sing Y 437 N sing N 438 N sing Y 439 N doub N 440 N sing Y 441 N doub N 442 N sing Y 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N doub N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 2472 10.1073/PNAS.1215076110 23359682 Activity-Based Probes for Rhomboid Proteases Discovered in a Mass Spectrometry-Based Assay. 2013 10.2210/pdb3zeb/pdb pdb_00003zeb 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 PIXEL 2012-05-24 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 I02 Diamond 0.9795 SYNCHROTRON DIAMOND BEAMLINE I02 THE ISOCOUMARIN RING IS OPENED BY THE NUCLEOPHILIC ATTACK OF S201 FORMS ESTER BOND AND SUBSEQUENTLY A REACTION BETWEEN HISTIDINE CREATES A SECOND COVALENT BOND. 20214.020 RHOMBOID PROTEASE GLPG 3.4.21.105 CORE TM DOMAIN, RESIDUES 92-270 1 man polymer 283.322 2-phenylethyl 2-(4-azanyl-2-methanoyl-phenyl)ethanoate 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 306.395 nonyl beta-D-glucopyranoside 5 man non-polymer 18.015 water 18 nat water INTRAMEMBRANE SERINE PROTEASE, GLPG no no RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN GAHIAGLAVGLAMAFVDSL RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN GAHIAGLAVGLAMAFVDSL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 469008 ESCHERICHIA COLI 469008 ESCHERICHIA COLI BL21(DE3) C41 PET PLASMID 1 3.5 64.8 NONE VAPOR DIFFUSION, HANGING DROP 7.0 2M AMMONIUM CHLORIDE, 0.1 M BIS-TRIS PH7.0, 298K 298 exptl_crystal_grow pdbx_database_proc pdbx_database_status struct_biol struct_conn chem_comp entity pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_nonpoly struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Database references Data collection Derived calculations Experimental preparation Other Data collection Derived calculations Other Structure summary Data collection Database references Refinement description Structure summary 1 0 2013-02-13 1 1 2013-03-06 1 2 2019-02-27 1 3 2020-07-29 1 4 2023-12-20 _exptl_crystal_grow.method _exptl_crystal_grow.temp _pdbx_database_status.recvd_author_approval _struct_conn.pdbx_leaving_atom_flag _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_database_status.status_code_sf _pdbx_entity_nonpoly.name _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession b-nonylglucoside PDBE Y PDBE 2012-12-04 REL REL SV1 2-phenylethyl 2-(4-azanyl-2-methanoyl-phenyl)ethanoate CL CHLORIDE ION BNG nonyl beta-D-glucopyranoside HOH water 2-PHENYLETHYL 2-(4-AZANYL-2-METHANOYL-PHENYL)ETHANOATE (SV1): THE NUCLEOPHILIC ATTACK OF SER 201 ON ISOCOUMARIN OPENS THE RING AND FORMS AN ESTER BOND. A SUBSEQUENT REACTION WITH HIS 150 RESULTS IN TWIN COVALENTLY BONDED MOLECULE. 2XOV PDB ENTRY 2XOV PDB experimental model SV1 401 2 SV1 SV1 401 A CL 402 3 CL CL 402 A BNG 403 4 BNG BNG 403 A BNG 404 4 BNG BNG 404 A BNG 405 4 BNG BNG 405 A BNG 406 4 BNG BNG 406 A BNG 407 4 BNG BNG 407 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A ARG 92 n 1 ARG 92 A ALA 93 n 2 ALA 93 A GLY 94 n 3 GLY 94 A PRO 95 n 4 PRO 95 A VAL 96 n 5 VAL 96 A THR 97 n 6 THR 97 A TRP 98 n 7 TRP 98 A VAL 99 n 8 VAL 99 A MET 100 n 9 MET 100 A MET 101 n 10 MET 101 A ILE 102 n 11 ILE 102 A ALA 103 n 12 ALA 103 A CYS 104 n 13 CYS 104 A VAL 105 n 14 VAL 105 A VAL 106 n 15 VAL 106 A VAL 107 n 16 VAL 107 A PHE 108 n 17 PHE 108 A ILE 109 n 18 ILE 109 A ALA 110 n 19 ALA 110 A MET 111 n 20 MET 111 A GLN 112 n 21 GLN 112 A ILE 113 n 22 ILE 113 A LEU 114 n 23 LEU 114 A GLY 115 n 24 GLY 115 A ASP 116 n 25 ASP 116 A GLN 117 n 26 GLN 117 A GLU 118 n 27 GLU 118 A VAL 119 n 28 VAL 119 A MET 120 n 29 MET 120 A LEU 121 n 30 LEU 121 A TRP 122 n 31 TRP 122 A LEU 123 n 32 LEU 123 A ALA 124 n 33 ALA 124 A TRP 125 n 34 TRP 125 A PRO 126 n 35 PRO 126 A PHE 127 n 36 PHE 127 A ASP 128 n 37 ASP 128 A PRO 129 n 38 PRO 129 A THR 130 n 39 THR 130 A LEU 131 n 40 LEU 131 A LYS 132 n 41 LYS 132 A PHE 133 n 42 PHE 133 A GLU 134 n 43 GLU 134 A PHE 135 n 44 PHE 135 A TRP 136 n 45 TRP 136 A ARG 137 n 46 ARG 137 A TYR 138 n 47 TYR 138 A PHE 139 n 48 PHE 139 A THR 140 n 49 THR 140 A HIS 141 n 50 HIS 141 A ALA 142 n 51 ALA 142 A LEU 143 n 52 LEU 143 A MET 144 n 53 MET 144 A HIS 145 n 54 HIS 145 A PHE 146 n 55 PHE 146 A SER 147 n 56 SER 147 A LEU 148 n 57 LEU 148 A MET 149 n 58 MET 149 A HIS 150 n 59 HIS 150 A ILE 151 n 60 ILE 151 A LEU 152 n 61 LEU 152 A PHE 153 n 62 PHE 153 A ASN 154 n 63 ASN 154 A LEU 155 n 64 LEU 155 A LEU 156 n 65 LEU 156 A TRP 157 n 66 TRP 157 A TRP 158 n 67 TRP 158 A TRP 159 n 68 TRP 159 A TYR 160 n 69 TYR 160 A LEU 161 n 70 LEU 161 A GLY 162 n 71 GLY 162 A GLY 163 n 72 GLY 163 A ALA 164 n 73 ALA 164 A VAL 165 n 74 VAL 165 A GLU 166 n 75 GLU 166 A LYS 167 n 76 LYS 167 A ARG 168 n 77 ARG 168 A LEU 169 n 78 LEU 169 A GLY 170 n 79 GLY 170 A SER 171 n 80 SER 171 A GLY 172 n 81 GLY 172 A LYS 173 n 82 LYS 173 A LEU 174 n 83 LEU 174 A ILE 175 n 84 ILE 175 A VAL 176 n 85 VAL 176 A ILE 177 n 86 ILE 177 A THR 178 n 87 THR 178 A LEU 179 n 88 LEU 179 A ILE 180 n 89 ILE 180 A SER 181 n 90 SER 181 A ALA 182 n 91 ALA 182 A LEU 183 n 92 LEU 183 A LEU 184 n 93 LEU 184 A SER 185 n 94 SER 185 A GLY 186 n 95 GLY 186 A TYR 187 n 96 TYR 187 A VAL 188 n 97 VAL 188 A GLN 189 n 98 GLN 189 A GLN 190 n 99 GLN 190 A LYS 191 n 100 LYS 191 A PHE 192 n 101 PHE 192 A SER 193 n 102 SER 193 A GLY 194 n 103 GLY 194 A PRO 195 n 104 PRO 195 A TRP 196 n 105 TRP 196 A PHE 197 n 106 PHE 197 A GLY 198 n 107 GLY 198 A GLY 199 n 108 GLY 199 A LEU 200 n 109 LEU 200 A SER 201 n 110 SER 201 A GLY 202 n 111 GLY 202 A VAL 203 n 112 VAL 203 A VAL 204 n 113 VAL 204 A TYR 205 n 114 TYR 205 A ALA 206 n 115 ALA 206 A LEU 207 n 116 LEU 207 A MET 208 n 117 MET 208 A GLY 209 n 118 GLY 209 A TYR 210 n 119 TYR 210 A VAL 211 n 120 VAL 211 A TRP 212 n 121 TRP 212 A LEU 213 n 122 LEU 213 A ARG 214 n 123 ARG 214 A GLY 215 n 124 GLY 215 A GLU 216 n 125 GLU 216 A ARG 217 n 126 ARG 217 A ASP 218 n 127 ASP 218 A PRO 219 n 128 PRO 219 A GLN 220 n 129 GLN 220 A SER 221 n 130 SER 221 A GLY 222 n 131 GLY 222 A ILE 223 n 132 ILE 223 A TYR 224 n 133 TYR 224 A LEU 225 n 134 LEU 225 A GLN 226 n 135 GLN 226 A ARG 227 n 136 ARG 227 A GLY 228 n 137 GLY 228 A LEU 229 n 138 LEU 229 A ILE 230 n 139 ILE 230 A ILE 231 n 140 ILE 231 A PHE 232 n 141 PHE 232 A ALA 233 n 142 ALA 233 A LEU 234 n 143 LEU 234 A ILE 235 n 144 ILE 235 A TRP 236 n 145 TRP 236 A ILE 237 n 146 ILE 237 A VAL 238 n 147 VAL 238 A ALA 239 n 148 ALA 239 A GLY 240 n 149 GLY 240 A TRP 241 n 150 TRP 241 A PHE 242 n 151 PHE 242 A ASP 243 n 152 ASP 243 A LEU 244 n 153 LEU 244 A PHE 245 n 154 PHE 245 A GLY 246 n 155 GLY 246 A MET 247 n 156 MET 247 A SER 248 n 157 SER 248 A MET 249 n 158 MET 249 A ALA 250 n 159 ALA 250 A ASN 251 n 160 ASN 251 A GLY 252 n 161 GLY 252 A ALA 253 n 162 ALA 253 A HIS 254 n 163 HIS 254 A ILE 255 n 164 ILE 255 A ALA 256 n 165 ALA 256 A GLY 257 n 166 GLY 257 A LEU 258 n 167 LEU 258 A ALA 259 n 168 ALA 259 A VAL 260 n 169 VAL 260 A GLY 261 n 170 GLY 261 A LEU 262 n 171 LEU 262 A ALA 263 n 172 ALA 263 A MET 264 n 173 MET 264 A ALA 265 n 174 ALA 265 A PHE 266 n 175 PHE 266 A VAL 267 n 176 VAL 267 A ASP 268 n 177 ASP 268 A SER 269 n 178 SER 269 A LEU 270 n 179 LEU 270 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG GLN 220 A CG GLN 129 1 Y 1 A CD GLN 220 A CD GLN 129 1 Y 1 A OE1 GLN 220 A OE1 GLN 129 1 Y 1 A NE2 GLN 220 A NE2 GLN 129 1 Y 1 A C1 BNG 403 D C1 BNG 1 1 N 1 A C2 BNG 403 D C2 BNG 1 1 N 1 A C3 BNG 403 D C3 BNG 1 1 N 1 A C4 BNG 403 D C4 BNG 1 1 N 1 A C5 BNG 403 D C5 BNG 1 1 N 1 A C6 BNG 403 D C6 BNG 1 1 N 1 A O1 BNG 403 D O1 BNG 1 1 N 1 A O2 BNG 403 D O2 BNG 1 1 N 1 A O3 BNG 403 D O3 BNG 1 1 N 1 A O4 BNG 403 D O4 BNG 1 1 N 1 A O5 BNG 403 D O5 BNG 1 1 N 1 A O6 BNG 403 D O6 BNG 1 1 N 1 A C1 BNG 404 E C1 BNG 1 1 N 1 A C2 BNG 404 E C2 BNG 1 1 N 1 A C3 BNG 404 E C3 BNG 1 1 N 1 A C4 BNG 404 E C4 BNG 1 1 N 1 A C5 BNG 404 E C5 BNG 1 1 N 1 A C6 BNG 404 E C6 BNG 1 1 N 1 A C8' BNG 404 E C8' BNG 1 1 N 1 A C9' BNG 404 E C9' BNG 1 1 N 1 A O1 BNG 404 E O1 BNG 1 1 N 1 A O2 BNG 404 E O2 BNG 1 1 N 1 A O3 BNG 404 E O3 BNG 1 1 N 1 A O4 BNG 404 E O4 BNG 1 1 N 1 A O5 BNG 404 E O5 BNG 1 1 N 1 A O6 BNG 404 E O6 BNG 1 1 N 1 A C1 BNG 405 F C1 BNG 1 1 N 1 A C2 BNG 405 F C2 BNG 1 1 N 1 A C3 BNG 405 F C3 BNG 1 1 N 1 A C4 BNG 405 F C4 BNG 1 1 N 1 A C5 BNG 405 F C5 BNG 1 1 N 1 A C6 BNG 405 F C6 BNG 1 1 N 1 A C6' BNG 405 F C6' BNG 1 1 N 1 A C7' BNG 405 F C7' BNG 1 1 N 1 A C8' BNG 405 F C8' BNG 1 1 N 1 A C9' BNG 405 F C9' BNG 1 1 N 1 A O1 BNG 405 F O1 BNG 1 1 N 1 A O2 BNG 405 F O2 BNG 1 1 N 1 A O3 BNG 405 F O3 BNG 1 1 N 1 A O4 BNG 405 F O4 BNG 1 1 N 1 A O5 BNG 405 F O5 BNG 1 1 N 1 A O6 BNG 405 F O6 BNG 1 1 N 1 A C1 BNG 407 H C1 BNG 1 1 N 1 A C2 BNG 407 H C2 BNG 1 1 N 1 A C3 BNG 407 H C3 BNG 1 1 N 1 A C4 BNG 407 H C4 BNG 1 1 N 1 A C5 BNG 407 H C5 BNG 1 1 N 1 A C6 BNG 407 H C6 BNG 1 1 N 1 A C6' BNG 407 H C6' BNG 1 1 N 1 A C7' BNG 407 H C7' BNG 1 1 N 1 A C8' BNG 407 H C8' BNG 1 1 N 1 A C9' BNG 407 H C9' BNG 1 1 N 1 A O1 BNG 407 H O1 BNG 1 1 N 1 A O2 BNG 407 H O2 BNG 1 1 N 1 A O3 BNG 407 H O3 BNG 1 1 N 1 A O4 BNG 407 H O4 BNG 1 1 N 1 A O5 BNG 407 H O5 BNG 1 1 N 1 A O6 BNG 407 H O6 BNG 1 1 N 1 A SER 269 -102.39 61.60 60.0 -1.30 -1.30 0.00 -1.30 0.00 4.21 0.950 0.935 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY 0.24703 0.21386 0.21552 2.20 44.99 761 14556 5.0 99.33 5.099 0.132 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.203 0.179 0.80 0.80 1.20 PDB ENTRY 2XOV MAXIMUM LIKELIHOOD MASK 2.20 44.99 18 1513 69 0 1426 0.008 0.019 1554 0.001 0.020 1528 1.091 1.950 2107 0.744 3.000 3485 4.641 5.000 182 24.937 21.786 56 12.705 15.000 232 7.983 15.000 6 0.061 0.200 226 0.004 0.020 1718 0.001 0.020 393 2.897 5.672 720 2.894 5.666 718 4.104 8.481 898 4.104 8.487 899 2.958 6.267 834 2.957 6.268 835 4.729 9.228 1208 7.126 48.133 1836 7.069 48.113 1832 0.302 0.299 2.256 65 1020 20 95.93 47.4 2.20 44.95 3ZEB 15318 0.0 0.06 1 13.50 4.9 99.6 0.48 2.20 2.32 3.10 1 4.9 98.1 refinement REFMAC 5.7.0032 data reduction XDS data scaling SCALA phasing PHASER A complex of GlpG with isocoumarin inhibitor covalently bonded to serine 201 and histidine 150 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N A GLY 94 A GLY 3 HELX_P A GLY 115 A GLY 24 1 1 22 A GLY 115 A GLY 24 HELX_P A ALA 124 A ALA 33 1 2 10 A ASP 128 A ASP 37 HELX_P A LYS 132 A LYS 41 5 3 5 A GLU 134 A GLU 43 HELX_P A PHE 139 A PHE 48 5 4 6 A PHE 139 A PHE 48 HELX_P A MET 144 A MET 53 5 5 6 A SER 147 A SER 56 HELX_P A GLY 170 A GLY 79 1 6 24 A GLY 170 A GLY 79 HELX_P A GLY 194 A GLY 103 1 7 25 A LEU 200 A LEU 109 HELX_P A ASP 218 A ASP 127 1 8 19 A PRO 219 A PRO 128 HELX_P A GLY 222 A GLY 131 5 9 4 A GLN 226 A GLN 135 HELX_P A PHE 242 A PHE 151 1 10 17 A ALA 250 A ALA 159 HELX_P A SER 269 A SER 178 1 11 20 covale 1.502 one A HIS 150 A ND1 HIS 59 1_555 A SV1 401 B C7 SV1 1_555 covale 1.479 one A SER 201 A OG SER 110 1_555 A SV1 401 B C SV1 1_555 HYDROLASE HYDROLASE, INTRA-MEMBRANE PROTEASE, SERINE PROTEASE, ACYL ENZYME GLPG_ECOLI UNP 1 P09391 92 270 3ZEB 92 270 P09391 A 1 1 179 155 H 3 2