0.011432 0.000000 0.000000 0.000000 0.011432 0.000000 0.000000 0.000000 0.011432 0.00000 0.00000 0.00000 Tormo-Mas, M.A. Donderis, J. Garcia-Caballer, M. Alt, A. Mir-Sanchis, I. Marina, A. Penades, J.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 90.00 87.470 87.470 87.470 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H16 N3 O13 P3 467.157 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O Y 75 N C Y 76 N C Y 77 N C Y 78 N N Y 79 N C N 80 N O Y 81 N N N 82 R C N 83 N C N 84 S C N 85 N O N 86 N O N 87 R C N 88 N C N 89 N O N 90 S P N 91 N O N 92 N O N 93 N N N 94 R P N 95 N O N 96 N O N 97 N O N 98 N P N 99 N O N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N N N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C N 143 N C N 144 N C N 145 N O N 146 N O N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N N N 158 N C N 159 N C N 160 N O N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N N N 168 S C N 169 N C N 170 N O N 171 N C Y 172 N C Y 173 N N Y 174 N C Y 175 N C Y 176 N N N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N O N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 S C N 196 N C N 197 N C N 198 N C N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N N N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N S N 267 N C N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N MG N 281 N NI N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N O N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 R C N 341 N O N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N N Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C N 391 N O N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C N 409 N C N 410 N C N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub Y 71 N sing Y 72 N sing Y 73 N doub N 74 N sing Y 75 N sing N 76 N sing Y 77 N sing N 78 N sing N 79 N doub Y 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing Y 172 N sing Y 173 N doub Y 174 N doub N 175 N sing Y 176 N sing N 177 N sing Y 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing Y 280 N doub Y 281 N sing Y 282 N sing N 283 N sing Y 284 N doub N 285 N sing Y 286 N doub N 287 N sing Y 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N doub N 382 N sing Y 383 N doub N 384 N sing Y 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing US Mol.Cell MOCEFL 2168 1097-2765 49 947 10.1016/J.MOLCEL.2012.12.013 23333307 Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism. 2013 UK Nature NATUAS 0006 0028-0836 465 779 10.1038/NATURE09065 20473284 Moonlighting Bacteriophage Proteins Derepress Staphylococcal Pathogenicity Islands. 2010 10.2210/pdb3zf4/pdb pdb_00003zf4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 I04-1 Diamond 0.9795 SYNCHROTRON DIAMOND BEAMLINE I04-1 STRUCTURE IN PRESENCE OF DUPNHPP AND MAGNESIUM 22575.529 DUTPASE 3.6.1.23 YES 1 man polymer 467.157 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 58.693 NICKEL (II) ION 2 syn non-polymer 18.015 water 12 nat water no no MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGAHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGAHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 53369 STAPHYLOCOCCUS PHAGE 80ALPHA 469008 ESCHERICHIA COLI BL21(DE3) PET28A PLASMID 2.44 49.60 NONE chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Other Refinement description Structure summary Database references Other Structure summary Data collection Database references Derived calculations Other Refinement description 1 0 2013-01-30 1 1 2013-03-20 1 2 2013-04-03 1 3 2013-04-17 1 4 2023-12-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81A MUTANT WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81N MUTANT WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84I MUTANT). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84F MUTANT WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81A D110C S168C MUTANT WITH DUPNHPP). PDBE Y PDBE 2012-12-10 REL REL DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE MG MAGNESIUM ION NI NICKEL (II) ION HOH water 3ZEZ PDB ENTRY 3ZEZ PDB experimental model DUP 777 2 DUP DUP 777 A MG 888 3 MG MG 888 A NI 1170 4 NI NI 1170 A NI 1171 4 NI NI 1171 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A n 1 -33 A n 2 -32 A n 3 -31 A n 4 -30 A n 5 -29 A n 6 -28 A n 7 -27 A n 8 -26 A n 9 -25 A n 10 -24 A n 11 -23 A n 12 -22 A n 13 -21 A n 14 -20 A n 15 -19 A n 16 -18 A n 17 -17 A n 18 -16 A n 19 -15 A n 20 -14 A n 21 -13 A n 22 -12 A n 23 -11 A n 24 -10 A n 25 -9 A n 26 -8 A n 27 -7 A n 28 -6 A n 29 -5 A n 30 -4 A n 31 -3 A n 32 -2 A n 33 -1 A n 34 0 A n 35 1 A THR 2 n 36 THR 2 A ASN 3 n 37 ASN 3 A THR 4 n 38 THR 4 A LEU 5 n 39 LEU 5 A GLN 6 n 40 GLN 6 A VAL 7 n 41 VAL 7 A LYS 8 n 42 LYS 8 A LEU 9 n 43 LEU 9 A LEU 10 n 44 LEU 10 A SER 11 n 45 SER 11 A LYS 12 n 46 LYS 12 A ASN 13 n 47 ASN 13 A ALA 14 n 48 ALA 14 A ARG 15 n 49 ARG 15 A MET 16 n 50 MET 16 A PRO 17 n 51 PRO 17 A GLU 18 n 52 GLU 18 A ARG 19 n 53 ARG 19 A ASN 20 n 54 ASN 20 A HIS 21 n 55 HIS 21 A LYS 22 n 56 LYS 22 A THR 23 n 57 THR 23 A ASP 24 n 58 ASP 24 A ALA 25 n 59 ALA 25 A GLY 26 n 60 GLY 26 A TYR 27 n 61 TYR 27 A ASP 28 n 62 ASP 28 A ILE 29 n 63 ILE 29 A PHE 30 n 64 PHE 30 A SER 31 n 65 SER 31 A ALA 32 n 66 ALA 32 A GLU 33 n 67 GLU 33 A THR 34 n 68 THR 34 A VAL 35 n 69 VAL 35 A VAL 36 n 70 VAL 36 A LEU 37 n 71 LEU 37 A GLU 38 n 72 GLU 38 A PRO 39 n 73 PRO 39 A GLN 40 n 74 GLN 40 A GLU 41 n 75 GLU 41 A LYS 42 n 76 LYS 42 A ALA 43 n 77 ALA 43 A VAL 44 n 78 VAL 44 A ILE 45 n 79 ILE 45 A LYS 46 n 80 LYS 46 A THR 47 n 81 THR 47 A ASP 48 n 82 ASP 48 A VAL 49 n 83 VAL 49 A ALA 50 n 84 ALA 50 A VAL 51 n 85 VAL 51 A SER 52 n 86 SER 52 A ILE 53 n 87 ILE 53 A PRO 54 n 88 PRO 54 A GLU 55 n 89 GLU 55 A GLY 56 n 90 GLY 56 A TYR 57 n 91 TYR 57 A VAL 58 n 92 VAL 58 A GLY 59 n 93 GLY 59 A LEU 60 n 94 LEU 60 A LEU 61 n 95 LEU 61 A THR 62 n 96 THR 62 A SER 63 n 97 SER 63 A ARG 64 n 98 ARG 64 A SER 65 n 99 SER 65 A GLY 66 n 100 GLY 66 A VAL 67 n 101 VAL 67 A SER 68 n 102 SER 68 A SER 69 n 103 SER 69 A LYS 70 n 104 LYS 70 A THR 71 n 105 THR 71 A HIS 72 n 106 HIS 72 A LEU 73 n 107 LEU 73 A VAL 74 n 108 VAL 74 A ILE 75 n 109 ILE 75 A GLU 76 n 110 GLU 76 A THR 77 n 111 THR 77 A GLY 78 n 112 GLY 78 A LYS 79 n 113 LYS 79 A ILE 80 n 114 ILE 80 A ASP 81 n 115 ASP 81 A ALA 82 n 116 ALA 82 A GLY 83 n 117 GLY 83 A ALA 84 n 118 ALA 84 A HIS 85 n 119 HIS 85 A GLY 86 n 120 GLY 86 A ASN 87 n 121 ASN 87 A LEU 88 n 122 LEU 88 A GLY 89 n 123 GLY 89 A ILE 90 n 124 ILE 90 A ASN 91 n 125 ASN 91 A ILE 92 n 126 ILE 92 A LYS 93 n 127 LYS 93 A ASN 94 n 128 ASN 94 A ASP 95 n 129 ASP 95 A HIS 96 n 130 HIS 96 A GLU 97 n 131 GLU 97 A ASP 98 n 132 ASP 98 A ASP 99 n 133 ASP 99 A LYS 100 n 134 LYS 100 A MET 101 n 135 MET 101 A GLN 102 n 136 GLN 102 A THR 103 n 137 THR 103 A ILE 104 n 138 ILE 104 A PHE 105 n 139 PHE 105 A LEU 106 n 140 LEU 106 A ARG 107 n 141 ARG 107 A ASN 108 n 142 ASN 108 A ILE 109 n 143 ILE 109 A ASP 110 n 144 ASP 110 A ASN 111 n 145 ASN 111 A GLU 112 n 146 GLU 112 A LYS 113 n 147 LYS 113 A ILE 114 n 148 ILE 114 A PHE 115 n 149 PHE 115 A GLU 116 n 150 GLU 116 A LYS 117 n 151 LYS 117 A GLU 118 n 152 GLU 118 A ARG 119 n 153 ARG 119 A HIS 120 n 154 HIS 120 A LEU 121 n 155 LEU 121 A TYR 122 n 156 TYR 122 A LYS 123 n 157 LYS 123 A LEU 124 n 158 LEU 124 A GLY 125 n 159 GLY 125 A SER 126 n 160 SER 126 A TYR 127 n 161 TYR 127 A ARG 128 n 162 ARG 128 A ILE 129 n 163 ILE 129 A GLU 130 n 164 GLU 130 A LYS 131 n 165 LYS 131 A GLY 132 n 166 GLY 132 A GLU 133 n 167 GLU 133 A ARG 134 n 168 ARG 134 A ILE 135 n 169 ILE 135 A ALA 136 n 170 ALA 136 A GLN 137 n 171 GLN 137 A LEU 138 n 172 LEU 138 A VAL 139 n 173 VAL 139 A ILE 140 n 174 ILE 140 A VAL 141 n 175 VAL 141 A PRO 142 n 176 PRO 142 A ILE 143 n 177 ILE 143 A TRP 144 n 178 TRP 144 A THR 145 n 179 THR 145 A PRO 146 n 180 PRO 146 A GLU 147 n 181 GLU 147 A LEU 148 n 182 LEU 148 A LYS 149 n 183 LYS 149 A GLN 150 n 184 GLN 150 A VAL 151 n 185 VAL 151 A GLU 152 n 186 GLU 152 A GLU 153 n 187 GLU 153 A PHE 154 n 188 PHE 154 A GLU 155 n 189 GLU 155 A n 190 156 A n 191 157 A n 192 158 A GLU 159 n 193 GLU 159 A ARG 160 n 194 ARG 160 A GLY 161 n 195 GLY 161 A GLU 162 n 196 GLU 162 A LYS 163 n 197 LYS 163 A n 198 164 A PHE 165 n 199 PHE 165 A GLY 166 n 200 GLY 166 A SER 167 n 201 SER 167 A SER 168 n 202 SER 168 A GLY 169 n 203 GLY 169 A n 204 170 A author_and_software_defined_assembly PISA 3 trimeric 16100 -116.0 21690 A ASP 95 A OD1 ASP 129 1_555 A NI 1170 D NI NI 1_555 A ASP 95 A OD1 ASP 129 5_555 100.2 A ASP 95 A OD1 ASP 129 1_555 A NI 1170 D NI NI 1_555 A ASP 95 A OD1 ASP 129 9_555 100.2 A ASP 95 A OD1 ASP 129 5_555 A NI 1170 D NI NI 1_555 A ASP 95 A OD1 ASP 129 9_555 100.2 A DUP 777 B O2B DUP 1_555 A MG 888 C MG MG 1_555 A DUP 777 B O2A DUP 1_555 84.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 9_555 y,z,x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5_555 z,x,y crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 8 A N LYS 42 A O ALA 50 A O ALA 84 A N THR 47 A N THR 81 A O LEU 88 A O LEU 122 A N LYS 93 A N LYS 127 A O VAL 74 A O VAL 108 A N GLU 18 A N GLU 52 A O ASP 28 A O ASP 62 A O ILE 29 A O ILE 63 A N ILE 135 A N ILE 169 A N VAL 141 A N VAL 175 A O VAL 58 A O VAL 92 A N LEU 61 A N LEU 95 A O GLY 78 A O GLY 112 A N LEU 37 A N LEU 71 A O TYR 127 A O TYR 161 A N THR 103 A N THR 137 A O TYR 122 A O TYR 156 1 A NI 1170 D NI 1 A NI 1171 E NI 1 A CE LYS 22 A CE LYS 56 1 Y 1 A NZ LYS 22 A NZ LYS 56 1 Y 1 A CB THR 23 A CB THR 57 1 Y 1 A OG1 THR 23 A OG1 THR 57 1 Y 1 A CG2 THR 23 A CG2 THR 57 1 Y 1 A CD GLU 55 A CD GLU 89 1 Y 1 A OE1 GLU 55 A OE1 GLU 89 1 Y 1 A OE2 GLU 55 A OE2 GLU 89 1 Y 1 A CD GLU 147 A CD GLU 181 1 Y 1 A CG GLU 159 A CG GLU 193 1 Y 1 A CD GLU 159 A CD GLU 193 1 Y 1 A OE1 GLU 159 A OE1 GLU 193 1 Y 1 A OE2 GLU 159 A OE2 GLU 193 1 Y 1 A CG ARG 160 A CG ARG 194 1 Y 1 A CD ARG 160 A CD ARG 194 1 Y 1 A NE ARG 160 A NE ARG 194 1 Y 1 A CZ ARG 160 A CZ ARG 194 1 Y 1 A NH1 ARG 160 A NH1 ARG 194 1 Y 1 A NH2 ARG 160 A NH2 ARG 194 1 Y 1 A CG LYS 163 A CG LYS 197 1 Y 1 A CD LYS 163 A CD LYS 197 1 Y 1 A CE LYS 163 A CE LYS 197 1 Y 1 A NZ LYS 163 A NZ LYS 197 1 Y 1 A MET -33 A MET 1 1 Y 1 A GLY -32 A GLY 2 1 Y 1 A SER -31 A SER 3 1 Y 1 A SER -30 A SER 4 1 Y 1 A HIS -29 A HIS 5 1 Y 1 A HIS -28 A HIS 6 1 Y 1 A HIS -27 A HIS 7 1 Y 1 A HIS -26 A HIS 8 1 Y 1 A HIS -25 A HIS 9 1 Y 1 A HIS -24 A HIS 10 1 Y 1 A SER -23 A SER 11 1 Y 1 A SER -22 A SER 12 1 Y 1 A GLY -21 A GLY 13 1 Y 1 A LEU -20 A LEU 14 1 Y 1 A VAL -19 A VAL 15 1 Y 1 A PRO -18 A PRO 16 1 Y 1 A ARG -17 A ARG 17 1 Y 1 A GLY -16 A GLY 18 1 Y 1 A SER -15 A SER 19 1 Y 1 A HIS -14 A HIS 20 1 Y 1 A MET -13 A MET 21 1 Y 1 A ALA -12 A ALA 22 1 Y 1 A SER -11 A SER 23 1 Y 1 A MET -10 A MET 24 1 Y 1 A THR -9 A THR 25 1 Y 1 A GLY -8 A GLY 26 1 Y 1 A GLY -7 A GLY 27 1 Y 1 A GLN -6 A GLN 28 1 Y 1 A GLN -5 A GLN 29 1 Y 1 A MET -4 A MET 30 1 Y 1 A GLY -3 A GLY 31 1 Y 1 A ARG -2 A ARG 32 1 Y 1 A GLY -1 A GLY 33 1 Y 1 A SER 0 A SER 34 1 Y 1 A MET 1 A MET 35 1 Y 1 A SER 156 A SER 190 1 Y 1 A VAL 157 A VAL 191 1 Y 1 A SER 158 A SER 192 1 Y 1 A GLY 164 A GLY 198 1 Y 1 A VAL 170 A VAL 204 1 Y 1 A ASN 3 -107.83 60.30 1 A LYS 100 65.77 -11.40 1 A PHE 115 -102.14 69.52 105.915 -39.57 16.24 -72.18 -42.35 -56.00 81.93 0.920 0.890 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. INITIAL MET IS NOT TRACED. RESIDUES K143 AND V170 ARE NOT TRACED BECAUSE OF LACK OF ELECTRON DENSITY. RESIUDES E159, , R160, K163, G169 ARE TRACED AS A. RESIDUES S156-S158 ARE DISORDERED. 0.29059 0.24025 0.24698 3.10 61.85 521 3692 12.4 99.55 24.204 0.424 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.116 0.80 0.80 1.20 PDB ENTRY 3ZEZ MAXIMUM LIKELIHOOD MASK 3.10 61.85 12 1318 31 0 1275 0.004 0.019 1321 0.922 1.988 1784 4.071 5.000 161 32.517 25.000 58 15.186 15.000 239 16.605 15.000 7 0.055 0.200 202 0.003 0.021 959 1.694 10.596 653 3.048 15.875 811 1.381 10.771 668 0.472 0.352 3.182 43 261 20 100.00 3.10 61.90 3ZF4 4224 2.0 0.06 1 8.20 5.1 99.7 0.33 3.10 3.27 2.40 1 5.3 100.0 refinement REFMAC 5.7.0032 data reduction XDS data scaling SCALA Phage dUTPases control transfer of virulence genes by a proto- oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase Y81A mutant with dUpNHpp). 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A ARG 64 A ARG 98 HELX_P A THR 71 A THR 105 1 1 8 metalc 2.639 A ASP 95 A OD1 ASP 129 1_555 A NI 1170 D NI NI 1_555 metalc 2.639 A ASP 95 A OD1 ASP 129 5_555 A NI 1170 D NI NI 1_555 metalc 2.639 A ASP 95 A OD1 ASP 129 9_555 A NI 1170 D NI NI 1_555 metalc 2.129 A DUP 777 B O2B DUP 1_555 A MG 888 C MG MG 1_555 metalc 2.031 A DUP 777 B O2A DUP 1_555 A MG 888 C MG MG 1_555 HYDROLASE HYDROLASE, PATHOGENICITY ISLAND, SAPI INDUCTION, GENE TRANSFER, MOONLIGHTING PROTEINS, G-PROTEIN, P-LOOP A4ZF98_9CAUD UNP 1 A4ZF98 1 170 3ZF4 1 170 A4ZF98 A 1 35 204 1 expression tag MET -33 3ZF4 A A4ZF98 UNP 1 1 expression tag GLY -32 3ZF4 A A4ZF98 UNP 2 1 expression tag SER -31 3ZF4 A A4ZF98 UNP 3 1 expression tag SER -30 3ZF4 A A4ZF98 UNP 4 1 expression tag HIS -29 3ZF4 A A4ZF98 UNP 5 1 expression tag HIS -28 3ZF4 A A4ZF98 UNP 6 1 expression tag HIS -27 3ZF4 A A4ZF98 UNP 7 1 expression tag HIS -26 3ZF4 A A4ZF98 UNP 8 1 expression tag HIS -25 3ZF4 A A4ZF98 UNP 9 1 expression tag HIS -24 3ZF4 A A4ZF98 UNP 10 1 expression tag SER -23 3ZF4 A A4ZF98 UNP 11 1 expression tag SER -22 3ZF4 A A4ZF98 UNP 12 1 expression tag GLY -21 3ZF4 A A4ZF98 UNP 13 1 expression tag LEU -20 3ZF4 A A4ZF98 UNP 14 1 expression tag VAL -19 3ZF4 A A4ZF98 UNP 15 1 expression tag PRO -18 3ZF4 A A4ZF98 UNP 16 1 expression tag ARG -17 3ZF4 A A4ZF98 UNP 17 1 expression tag GLY -16 3ZF4 A A4ZF98 UNP 18 1 expression tag SER -15 3ZF4 A A4ZF98 UNP 19 1 expression tag HIS -14 3ZF4 A A4ZF98 UNP 20 1 expression tag MET -13 3ZF4 A A4ZF98 UNP 21 1 expression tag ALA -12 3ZF4 A A4ZF98 UNP 22 1 expression tag SER -11 3ZF4 A A4ZF98 UNP 23 1 expression tag MET -10 3ZF4 A A4ZF98 UNP 24 1 expression tag THR -9 3ZF4 A A4ZF98 UNP 25 1 expression tag GLY -8 3ZF4 A A4ZF98 UNP 26 1 expression tag GLY -7 3ZF4 A A4ZF98 UNP 27 1 expression tag GLN -6 3ZF4 A A4ZF98 UNP 28 1 expression tag GLN -5 3ZF4 A A4ZF98 UNP 29 1 expression tag MET -4 3ZF4 A A4ZF98 UNP 30 1 expression tag GLY -3 3ZF4 A A4ZF98 UNP 31 1 expression tag ARG -2 3ZF4 A A4ZF98 UNP 32 1 expression tag GLY -1 3ZF4 A A4ZF98 UNP 33 1 expression tag SER 0 3ZF4 A A4ZF98 UNP 34 1 TYR engineered mutation ALA 84 3ZF4 A A4ZF98 UNP 84 118 4 5 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 6 A GLN 40 A LEU 9 A LEU 43 A LYS 42 A LYS 76 A SER 52 A SER 86 A ASN 87 A ASN 121 A ASN 94 A ASN 128 A LEU 73 A LEU 107 A ILE 75 A ILE 109 A GLU 18 A GLU 52 A ARG 19 A ARG 53 A TYR 27 A TYR 61 A PHE 30 A PHE 64 A ARG 134 A ARG 168 A PRO 142 A PRO 176 A TYR 57 A TYR 91 A SER 63 A SER 97 A GLY 78 A GLY 112 A ILE 80 A ILE 114 A VAL 35 A VAL 69 A LEU 37 A LEU 71 A TYR 127 A TYR 161 A ILE 129 A ILE 163 A GLN 102 A GLN 136 A THR 103 A THR 137 A TYR 122 A TYR 156 A LYS 123 A LYS 157 BINDING SITE FOR RESIDUE DUP A 777 A DUP 777 Software 17 BINDING SITE FOR RESIDUE MG A 888 A MG 888 Software 3 BINDING SITE FOR RESIDUE NI A 1170 A NI 1170 Software 3 A ARG 64 A ARG 98 17 5_555 A SER 65 A SER 99 17 5_555 A GLY 66 A GLY 100 17 5_555 A GLY 78 A GLY 112 17 1_555 A LYS 79 A LYS 113 17 1_555 A ILE 80 A ILE 114 17 1_555 A ASP 81 A ASP 115 17 1_555 A ALA 84 A ALA 118 17 1_555 A LEU 88 A LEU 122 17 1_555 A GLY 89 A GLY 123 17 1_555 A GLN 137 A GLN 171 17 5_555 A PHE 165 A PHE 199 17 9_555 A GLY 166 A GLY 200 17 9_555 A SER 167 A SER 201 17 9_555 A SER 168 A SER 202 17 9_555 A MG 888 C MG 17 1_555 A HOH 2009 F HOH 17 5_555 A ASP 28 A ASP 62 3 5_555 A GLN 137 A GLN 171 3 5_555 A DUP 777 B DUP 3 1_555 A ASP 95 A ASP 129 3 1_555 A ASP 95 A ASP 129 3 9_555 A ASP 95 A ASP 129 3 5_555 198 P 21 3