0.011434 0.000000 0.000000 0.000000 0.011434 0.000000 0.000000 0.000000 0.011434 0.00000 0.00000 0.00000 Tormo-Mas, M.A. Donderis, J. Garcia-Caballer, M. Alt, A. Mir-Sanchis, I. Marina, A. Penades, J.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 90.00 87.460 87.460 87.460 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O8 P 308.182 2'-DEOXYURIDINE 5'-MONOPHOSPHATE DUMP non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N NI N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 N C N 375 N N N 376 N C N 377 N C N 378 N C N 379 N O N 380 N O N 381 R C N 382 N C N 383 S C N 384 R C N 385 N O N 386 N O N 387 N C N 388 N O N 389 N P N 390 N O N 391 N O N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C N 411 N C N 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing US Mol.Cell MOCEFL 2168 1097-2765 49 947 10.1016/J.MOLCEL.2012.12.013 23333307 Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism. 2013 UK Nature NATUAS 0006 0028-0836 465 779 10.1038/NATURE09065 20473284 Moonlighting Bacteriophage Proteins Derepress Staphylococcal Pathogenicity Islands. 2010 10.2210/pdb3zf6/pdb pdb_00003zf6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 SINGLE WAVELENGTH M x-ray 1 0.8726 1.0 ID23-2 ESRF 0.8726 SYNCHROTRON ESRF STRUCTURE IN PRESENCE OF DUMP 22627.736 DUTPASE 3.6.1.23 YES 1 man polymer 58.693 NICKEL (II) ION 2 syn non-polymer 308.182 2'-DEOXYURIDINE 5'-MONOPHOSPHATE 1 syn non-polymer 18.015 water 50 nat water no no MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNICNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSCGV MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNICNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSCGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 53369 STAPHYLOCOCCUS PHAGE 80ALPHA 469008 ESCHERICHIA COLI BL21(DE3) PET28A PLASMID 2.43 49.47 NONE 2-8% TERT-BUTANOL, 0.1M TRID (PH 8.5). 30-50% MPD OR PEG400. diffrn_source chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Other Refinement description Structure summary Database references Other Structure summary Data collection Data collection Database references Derived calculations Other Refinement description 1 0 2013-01-30 1 1 2013-03-20 1 2 2013-04-03 1 3 2013-04-17 1 4 2018-05-02 1 5 2023-12-20 _diffrn_source.pdbx_synchrotron_beamline _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81A MUTANT WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81N MUTANT WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE). (PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84I MUTANT). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y81A MUTANT WITH DUPNHPP). PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84F MUTANT WITH DUPNHPP). PDBE Y PDBE 2012-12-10 REL REL NI NICKEL (II) ION UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HOH water 3ZEZ PDB ENTRY 3ZEZ PDB experimental model NI 1171 2 NI NI 1171 A UMP 1172 3 UMP UMP 1172 A NI 1173 2 NI NI 1173 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A n 1 -33 A n 2 -32 A n 3 -31 A n 4 -30 A n 5 -29 A n 6 -28 A n 7 -27 A n 8 -26 A n 9 -25 A n 10 -24 A n 11 -23 A n 12 -22 A n 13 -21 A n 14 -20 A n 15 -19 A n 16 -18 A n 17 -17 A n 18 -16 A n 19 -15 A n 20 -14 A n 21 -13 A n 22 -12 A n 23 -11 A n 24 -10 A n 25 -9 A n 26 -8 A n 27 -7 A n 28 -6 A n 29 -5 A n 30 -4 A n 31 -3 A n 32 -2 A n 33 -1 A n 34 0 A n 35 1 A THR 2 n 36 THR 2 A ASN 3 n 37 ASN 3 A THR 4 n 38 THR 4 A LEU 5 n 39 LEU 5 A GLN 6 n 40 GLN 6 A VAL 7 n 41 VAL 7 A LYS 8 n 42 LYS 8 A LEU 9 n 43 LEU 9 A LEU 10 n 44 LEU 10 A SER 11 n 45 SER 11 A LYS 12 n 46 LYS 12 A ASN 13 n 47 ASN 13 A ALA 14 n 48 ALA 14 A ARG 15 n 49 ARG 15 A MET 16 n 50 MET 16 A PRO 17 n 51 PRO 17 A GLU 18 n 52 GLU 18 A ARG 19 n 53 ARG 19 A ASN 20 n 54 ASN 20 A HIS 21 n 55 HIS 21 A LYS 22 n 56 LYS 22 A THR 23 n 57 THR 23 A ASP 24 n 58 ASP 24 A ALA 25 n 59 ALA 25 A GLY 26 n 60 GLY 26 A TYR 27 n 61 TYR 27 A ASP 28 n 62 ASP 28 A ILE 29 n 63 ILE 29 A PHE 30 n 64 PHE 30 A SER 31 n 65 SER 31 A ALA 32 n 66 ALA 32 A GLU 33 n 67 GLU 33 A THR 34 n 68 THR 34 A VAL 35 n 69 VAL 35 A VAL 36 n 70 VAL 36 A LEU 37 n 71 LEU 37 A GLU 38 n 72 GLU 38 A PRO 39 n 73 PRO 39 A GLN 40 n 74 GLN 40 A GLU 41 n 75 GLU 41 A LYS 42 n 76 LYS 42 A ALA 43 n 77 ALA 43 A VAL 44 n 78 VAL 44 A ILE 45 n 79 ILE 45 A LYS 46 n 80 LYS 46 A THR 47 n 81 THR 47 A ASP 48 n 82 ASP 48 A VAL 49 n 83 VAL 49 A ALA 50 n 84 ALA 50 A VAL 51 n 85 VAL 51 A SER 52 n 86 SER 52 A ILE 53 n 87 ILE 53 A PRO 54 n 88 PRO 54 A GLU 55 n 89 GLU 55 A GLY 56 n 90 GLY 56 A TYR 57 n 91 TYR 57 A VAL 58 n 92 VAL 58 A GLY 59 n 93 GLY 59 A LEU 60 n 94 LEU 60 A LEU 61 n 95 LEU 61 A THR 62 n 96 THR 62 A SER 63 n 97 SER 63 A ARG 64 n 98 ARG 64 A SER 65 n 99 SER 65 A GLY 66 n 100 GLY 66 A VAL 67 n 101 VAL 67 A SER 68 n 102 SER 68 A SER 69 n 103 SER 69 A LYS 70 n 104 LYS 70 A THR 71 n 105 THR 71 A HIS 72 n 106 HIS 72 A LEU 73 n 107 LEU 73 A VAL 74 n 108 VAL 74 A ILE 75 n 109 ILE 75 A GLU 76 n 110 GLU 76 A THR 77 n 111 THR 77 A GLY 78 n 112 GLY 78 A LYS 79 n 113 LYS 79 A ILE 80 n 114 ILE 80 A ALA 81 n 115 ALA 81 A ALA 82 n 116 ALA 82 A GLY 83 n 117 GLY 83 A TYR 84 n 118 TYR 84 A HIS 85 n 119 HIS 85 A GLY 86 n 120 GLY 86 A ASN 87 n 121 ASN 87 A LEU 88 n 122 LEU 88 A GLY 89 n 123 GLY 89 A ILE 90 n 124 ILE 90 A ASN 91 n 125 ASN 91 A ILE 92 n 126 ILE 92 A LYS 93 n 127 LYS 93 A ASN 94 n 128 ASN 94 A ASP 95 n 129 ASP 95 A HIS 96 n 130 HIS 96 A GLU 97 n 131 GLU 97 A ASP 98 n 132 ASP 98 A ASP 99 n 133 ASP 99 A LYS 100 n 134 LYS 100 A MET 101 n 135 MET 101 A GLN 102 n 136 GLN 102 A THR 103 n 137 THR 103 A ILE 104 n 138 ILE 104 A PHE 105 n 139 PHE 105 A LEU 106 n 140 LEU 106 A ARG 107 n 141 ARG 107 A ASN 108 n 142 ASN 108 A ILE 109 n 143 ILE 109 A CYS 110 n 144 CYS 110 A ASN 111 n 145 ASN 111 A GLU 112 n 146 GLU 112 A LYS 113 n 147 LYS 113 A ILE 114 n 148 ILE 114 A PHE 115 n 149 PHE 115 A GLU 116 n 150 GLU 116 A LYS 117 n 151 LYS 117 A GLU 118 n 152 GLU 118 A ARG 119 n 153 ARG 119 A HIS 120 n 154 HIS 120 A LEU 121 n 155 LEU 121 A TYR 122 n 156 TYR 122 A LYS 123 n 157 LYS 123 A LEU 124 n 158 LEU 124 A GLY 125 n 159 GLY 125 A SER 126 n 160 SER 126 A TYR 127 n 161 TYR 127 A ARG 128 n 162 ARG 128 A ILE 129 n 163 ILE 129 A GLU 130 n 164 GLU 130 A LYS 131 n 165 LYS 131 A GLY 132 n 166 GLY 132 A GLU 133 n 167 GLU 133 A ARG 134 n 168 ARG 134 A ILE 135 n 169 ILE 135 A ALA 136 n 170 ALA 136 A GLN 137 n 171 GLN 137 A LEU 138 n 172 LEU 138 A VAL 139 n 173 VAL 139 A ILE 140 n 174 ILE 140 A VAL 141 n 175 VAL 141 A PRO 142 n 176 PRO 142 A ILE 143 n 177 ILE 143 A TRP 144 n 178 TRP 144 A THR 145 n 179 THR 145 A PRO 146 n 180 PRO 146 A GLU 147 n 181 GLU 147 A LEU 148 n 182 LEU 148 A LYS 149 n 183 LYS 149 A GLN 150 n 184 GLN 150 A VAL 151 n 185 VAL 151 A GLU 152 n 186 GLU 152 A GLU 153 n 187 GLU 153 A PHE 154 n 188 PHE 154 A GLU 155 n 189 GLU 155 A SER 156 n 190 SER 156 A VAL 157 n 191 VAL 157 A SER 158 n 192 SER 158 A GLU 159 n 193 GLU 159 A ARG 160 n 194 ARG 160 A GLY 161 n 195 GLY 161 A GLU 162 n 196 GLU 162 A LYS 163 n 197 LYS 163 A GLY 164 n 198 GLY 164 A PHE 165 n 199 PHE 165 A GLY 166 n 200 GLY 166 A SER 167 n 201 SER 167 A CYS 168 n 202 CYS 168 A GLY 169 n 203 GLY 169 A VAL 170 n 204 VAL 170 A author_and_software_defined_assembly PISA 3 trimeric 15810 -96.6 21800 A ASP 95 A OD1 ASP 129 1_555 A NI 1171 B NI NI 1_555 A ASP 95 A OD1 ASP 129 9_555 103.9 A ASP 95 A OD1 ASP 129 1_555 A NI 1171 B NI NI 1_555 A ASP 95 A OD1 ASP 129 5_555 103.9 A ASP 95 A OD1 ASP 129 9_555 A NI 1171 B NI NI 1_555 A ASP 95 A OD1 ASP 129 5_555 103.9 A ASP 95 A OD1 ASP 129 1_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 5_555 159.7 A ASP 95 A OD1 ASP 129 9_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 5_555 79.3 A ASP 95 A OD1 ASP 129 5_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 5_555 94.5 A ASP 95 A OD1 ASP 129 1_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 9_555 79.3 A ASP 95 A OD1 ASP 129 9_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 9_555 94.5 A ASP 95 A OD1 ASP 129 5_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 9_555 159.7 A HOH 2011 E O HOH 5_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 9_555 80.5 A ASP 95 A OD1 ASP 129 1_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 1_555 94.5 A ASP 95 A OD1 ASP 129 9_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 1_555 159.7 A ASP 95 A OD1 ASP 129 5_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 1_555 79.3 A HOH 2011 E O HOH 5_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 1_555 80.5 A HOH 2011 E O HOH 9_555 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 1_555 80.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 9_555 y,z,x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5_555 z,x,y crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 8 A N LYS 42 A O ALA 50 A O ALA 84 A O ILE 29 A O ILE 63 A N ILE 135 A N ILE 169 A N VAL 141 A N VAL 175 A O VAL 58 A O VAL 92 A N LEU 61 A N LEU 95 A O GLY 78 A O GLY 112 A N LEU 37 A N LEU 71 A O TYR 127 A O TYR 161 A N ILE 45 A N ILE 79 A O ILE 90 A O ILE 124 A N LYS 93 A N LYS 127 A O VAL 74 A O VAL 108 A N THR 103 A N THR 137 A O TYR 122 A O TYR 156 A N LEU 106 A N LEU 140 A O ILE 114 A O ILE 148 1 A NI 1171 B NI 1 A NI 1173 D NI 1 A HOH 2008 E HOH 1 A HOH 2039 E HOH 1 A CG LYS 22 A CG LYS 56 1 Y 1 A CD LYS 22 A CD LYS 56 1 Y 1 A CE LYS 22 A CE LYS 56 1 Y 1 A NZ LYS 22 A NZ LYS 56 1 Y 1 A NZ LYS 46 A NZ LYS 80 1 Y 1 A CG LYS 117 A CG LYS 151 1 Y 1 A CD LYS 117 A CD LYS 151 1 Y 1 A CE LYS 117 A CE LYS 151 1 Y 1 A NZ LYS 117 A NZ LYS 151 1 Y 1 A CG GLU 147 A CG GLU 181 1 Y 1 A CD GLU 147 A CD GLU 181 1 Y 1 A OE1 GLU 147 A OE1 GLU 181 1 Y 1 A OE2 GLU 147 A OE2 GLU 181 1 Y 1 A CG LYS 149 A CG LYS 183 1 Y 1 A CD LYS 149 A CD LYS 183 1 Y 1 A CE LYS 149 A CE LYS 183 1 Y 1 A NZ LYS 149 A NZ LYS 183 1 Y 1 A MET -33 A MET 1 1 Y 1 A GLY -32 A GLY 2 1 Y 1 A SER -31 A SER 3 1 Y 1 A SER -30 A SER 4 1 Y 1 A HIS -29 A HIS 5 1 Y 1 A HIS -28 A HIS 6 1 Y 1 A HIS -27 A HIS 7 1 Y 1 A HIS -26 A HIS 8 1 Y 1 A HIS -25 A HIS 9 1 Y 1 A HIS -24 A HIS 10 1 Y 1 A SER -23 A SER 11 1 Y 1 A SER -22 A SER 12 1 Y 1 A GLY -21 A GLY 13 1 Y 1 A LEU -20 A LEU 14 1 Y 1 A VAL -19 A VAL 15 1 Y 1 A PRO -18 A PRO 16 1 Y 1 A ARG -17 A ARG 17 1 Y 1 A GLY -16 A GLY 18 1 Y 1 A SER -15 A SER 19 1 Y 1 A HIS -14 A HIS 20 1 Y 1 A MET -13 A MET 21 1 Y 1 A ALA -12 A ALA 22 1 Y 1 A SER -11 A SER 23 1 Y 1 A MET -10 A MET 24 1 Y 1 A THR -9 A THR 25 1 Y 1 A GLY -8 A GLY 26 1 Y 1 A GLY -7 A GLY 27 1 Y 1 A GLN -6 A GLN 28 1 Y 1 A GLN -5 A GLN 29 1 Y 1 A MET -4 A MET 30 1 Y 1 A GLY -3 A GLY 31 1 Y 1 A ARG -2 A ARG 32 1 Y 1 A GLY -1 A GLY 33 1 Y 1 A SER 0 A SER 34 1 Y 1 A MET 1 A MET 35 1 Y 1 A A OE1 O GLU HOH 76 2030 2.17 1 -9.74 1.50 110.50 100.76 A A A N CA CB SER SER SER 167 167 167 N 1 A A SG SG CYS CYS 110 168 1.08 1_555 5_555 1 A A OG O SER HOH 167 2050 1.85 1_555 5_555 1 A A OD1 NH2 ASP ARG 24 160 1.86 1_555 5_555 1 A A CB SG CYS CYS 110 168 1.92 1_555 5_555 1 A A NH1 O ARG VAL 134 170 2.02 1_555 5_555 1 A HIS 21 69.77 140.02 63.086 -9.01 0.78 -6.20 -9.99 -6.42 19.00 0.939 0.896 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. INITIAL MET IS NOT TRACED. RESIDUES K22 K149 AND V157 ARE TRACED AS ALA BECAUSE OF LACK OF ELECTRON DENSITY. 0.27328 0.22429 0.22758 2.60 35.71 500 6578 7.1 99.79 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.148 0.071 0.80 0.80 1.20 PDB ENTRY 3ZEZ MAXIMUM LIKELIHOOD MASK 2.60 35.71 50 1385 22 0 1313 0.005 0.019 1363 0.869 1.977 1844 4.632 5.000 170 30.793 24.754 61 13.969 15.000 243 12.667 15.000 8 0.049 0.200 209 0.003 0.021 1012 1.175 6.355 680 2.192 9.522 850 0.758 6.419 683 0.372 0.320 2.669 37 493 20 100.00 2.60 39.11 3ZF6 7102 2.0 0.05 1 23.20 5.5 99.9 0.40 2.60 2.74 3.90 1 5.7 100.0 refinement REFMAC 5.7.0032 data reduction XDS data scaling SCALA phasing MOLREP Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase D81A D110C S168C mutant with dUpNHpp). 1 N N 2 N N 3 N N 2 N N 4 N N A ARG 64 A ARG 98 HELX_P A THR 71 A THR 105 1 1 8 metalc 2.656 A ASP 95 A OD1 ASP 129 1_555 A NI 1171 B NI NI 1_555 metalc 2.656 A ASP 95 A OD1 ASP 129 9_555 A NI 1171 B NI NI 1_555 metalc 2.656 A ASP 95 A OD1 ASP 129 5_555 A NI 1171 B NI NI 1_555 metalc 2.182 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 5_555 metalc 2.182 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 9_555 metalc 2.182 A NI 1171 B NI NI 1_555 A HOH 2011 E O HOH 1_555 HYDROLASE HYDROLASE, PATHOGENICITY ISLAND, SAPI INDUCTION, GENE TRANSF MOONLIGHTING PROTEINS, G-PROTEIN, P-LOOP A LYS 163 A LYS 197 1 A GLY 164 A GLY 198 -0.09 A4ZF98_9CAUD UNP 1 A4ZF98 1 170 3ZF6 1 170 A4ZF98 A 1 35 204 1 expression tag MET -33 3ZF6 A A4ZF98 UNP 1 1 expression tag GLY -32 3ZF6 A A4ZF98 UNP 2 1 expression tag SER -31 3ZF6 A A4ZF98 UNP 3 1 expression tag SER -30 3ZF6 A A4ZF98 UNP 4 1 expression tag HIS -29 3ZF6 A A4ZF98 UNP 5 1 expression tag HIS -28 3ZF6 A A4ZF98 UNP 6 1 expression tag HIS -27 3ZF6 A A4ZF98 UNP 7 1 expression tag HIS -26 3ZF6 A A4ZF98 UNP 8 1 expression tag HIS -25 3ZF6 A A4ZF98 UNP 9 1 expression tag HIS -24 3ZF6 A A4ZF98 UNP 10 1 expression tag SER -23 3ZF6 A A4ZF98 UNP 11 1 expression tag SER -22 3ZF6 A A4ZF98 UNP 12 1 expression tag GLY -21 3ZF6 A A4ZF98 UNP 13 1 expression tag LEU -20 3ZF6 A A4ZF98 UNP 14 1 expression tag VAL -19 3ZF6 A A4ZF98 UNP 15 1 expression tag PRO -18 3ZF6 A A4ZF98 UNP 16 1 expression tag ARG -17 3ZF6 A A4ZF98 UNP 17 1 expression tag GLY -16 3ZF6 A A4ZF98 UNP 18 1 expression tag SER -15 3ZF6 A A4ZF98 UNP 19 1 expression tag HIS -14 3ZF6 A A4ZF98 UNP 20 1 expression tag MET -13 3ZF6 A A4ZF98 UNP 21 1 expression tag ALA -12 3ZF6 A A4ZF98 UNP 22 1 expression tag SER -11 3ZF6 A A4ZF98 UNP 23 1 expression tag MET -10 3ZF6 A A4ZF98 UNP 24 1 expression tag THR -9 3ZF6 A A4ZF98 UNP 25 1 expression tag GLY -8 3ZF6 A A4ZF98 UNP 26 1 expression tag GLY -7 3ZF6 A A4ZF98 UNP 27 1 expression tag GLN -6 3ZF6 A A4ZF98 UNP 28 1 expression tag GLN -5 3ZF6 A A4ZF98 UNP 29 1 expression tag MET -4 3ZF6 A A4ZF98 UNP 30 1 expression tag GLY -3 3ZF6 A A4ZF98 UNP 31 1 expression tag ARG -2 3ZF6 A A4ZF98 UNP 32 1 expression tag GLY -1 3ZF6 A A4ZF98 UNP 33 1 expression tag SER 0 3ZF6 A A4ZF98 UNP 34 1 ASP engineered mutation ALA 81 3ZF6 A A4ZF98 UNP 81 115 1 ASP engineered mutation CYS 110 3ZF6 A A4ZF98 UNP 110 144 1 SER engineered mutation CYS 168 3ZF6 A A4ZF98 UNP 168 202 2 4 2 3 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 6 A GLN 40 A LEU 9 A LEU 43 A VAL 49 A VAL 83 A SER 52 A SER 86 A TYR 27 A TYR 61 A PHE 30 A PHE 64 A ARG 134 A ARG 168 A PRO 142 A PRO 176 A TYR 57 A TYR 91 A SER 63 A SER 97 A GLY 78 A GLY 112 A ILE 80 A ILE 114 A VAL 35 A VAL 69 A LEU 37 A LEU 71 A TYR 127 A TYR 161 A ILE 129 A ILE 163 A LYS 42 A LYS 76 A LYS 46 A LYS 80 A GLY 89 A GLY 123 A ASN 94 A ASN 128 A LEU 73 A LEU 107 A ILE 75 A ILE 109 A GLN 102 A GLN 136 A THR 103 A THR 137 A TYR 122 A TYR 156 A LYS 123 A LYS 157 A LEU 106 A LEU 140 A ARG 107 A ARG 141 A LYS 113 A LYS 147 A ILE 114 A ILE 148 BINDING SITE FOR RESIDUE NI A 1171 A NI 1171 Software 6 BINDING SITE FOR RESIDUE UMP A 1172 A UMP 1172 Software 18 A ASP 95 A ASP 129 6 1_555 A ASP 95 A ASP 129 6 9_555 A ASP 95 A ASP 129 6 5_555 A HOH 2011 E HOH 6 9_555 A HOH 2011 E HOH 6 1_555 A HOH 2011 E HOH 6 5_555 A ARG 64 A ARG 98 18 5_555 A SER 65 A SER 99 18 5_555 A GLY 78 A GLY 112 18 1_555 A LYS 79 A LYS 113 18 1_555 A ALA 81 A ALA 115 18 1_555 A TYR 84 A TYR 118 18 1_555 A LEU 88 A LEU 122 18 1_555 A GLY 89 A GLY 123 18 1_555 A GLN 137 A GLN 171 18 5_555 A GLY 164 A GLY 198 18 9_555 A PHE 165 A PHE 199 18 9_555 A HOH 2016 E HOH 18 5_555 A HOH 2018 E HOH 18 5_555 A HOH 2027 E HOH 18 1_555 A HOH 2028 E HOH 18 1_555 A HOH 2035 E HOH 18 1_555 A HOH 2036 E HOH 18 1_555 A HOH 2050 E HOH 18 1_555 198 P 21 3