0.023590 0.000000 0.011156 0.000000 0.024366 0.000000 0.000000 0.000000 0.024853 0.00000 0.00000 0.00000 Zogg, T. Sponring, M. Schindler, S. Koll, M. Schneider, R. Brandstetter, H. Auer, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 115.31 90.00 42.390 41.040 44.510 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C3 H8 O2 S 108.159 MONOTHIOGLYCEROL non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N C N 306 R C N 307 N O N 308 N C N 309 N O N 310 N S N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 R C N 324 N O N 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N N Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N O N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N N N 388 S C N 389 N C N 390 N O N 391 N C N 392 N C N 393 N C N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N sing Y 339 N doub N 340 N sing Y 341 N doub N 342 N sing Y 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing Y 358 N doub Y 359 N sing Y 360 N sing N 361 N sing Y 362 N doub N 363 N sing Y 364 N doub N 365 N sing Y 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing UK Structure STRUE6 2005 0969-2126 21 929 10.1016/J.STR.2013.04.003 23643950 Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis 2013 10.2210/pdb3zfp/pdb pdb_00003zfp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-12-19 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 0.97004 1.0 X12 EMBL/DESY, HAMBURG 0.97004 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 16662.188 N-TERMINAL PROTEASE NPRO 3.4.22.- NPRO, RESIDUES 22-168 YES 1 man polymer 108.159 MONOTHIOGLYCEROL 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 184 nat water NONSTRUCTURAL PROTEIN no no MEPLYDKNGAVLFGEPSDTHPQSTLKLPHPRGEKEVIVGIRDLPRKGDCRTGNRLGPVSGLFVKPGPVFYQDYSGPVYHR APLEQFKQAPMCEVTKRIGRVTGSDGNLYHMYVCTDGCILVKTAKHHHHHVLKWVYNVLDSPIWVTSC MEPLYDKNGAVLFGEPSDTHPQSTLKLPHPRGEKEVIVGIRDLPRKGDCRTGNRLGPVSGLFVKPGPVFYQDYSGPVYHR APLEQFKQAPMCEVTKRIGRVTGSDGNLYHMYVCTDGCILVKTAKHHHHHVLKWVYNVLDSPIWVTSC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 266829 PESTIVIRUS STRAIN D32/00_HOBI 469008 ESCHERICHIA COLI BL21(DE3) PET30B PLASMID 1 2.1 42 NONE 8.5 100MM NAACETATE, PH 8.5 25% PEG6000 diffrn_source pdbx_unobs_or_zero_occ_atoms struct_conn chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_unobs_or_zero_occ_atoms struct_conn struct_site repository Initial release Database references Refinement description Advisory Data collection Derived calculations Advisory Data collection Database references Derived calculations Other Refinement description 1 0 2013-05-15 1 1 2013-06-19 1 2 2019-07-17 1 3 2023-12-20 _diffrn_source.pdbx_synchrotron_site _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF PRODUCT-LIKE, PROCESSED N-TERMINAL PROTEASE NPRO CRYSTAL STRUCTURE OF SUBSTRATE-LIKE, UNPROCESSED N- TERMINAL PROTEASE NPRO MUTANT S169P CRYSTAL STRUCTURE OF PRODUCT-LIKE, PROCESSED N-TERMINAL PROTEASE NPRO WITH MERCURY CRYSTAL STRUCTURE OF PRODUCT-LIKE, PROCESSED N-TERMINAL PROTEASE NPRO WITH IRIDIUM CRYSTAL STRUCTURE OF PRODUCT-LIKE, PROCESSED N-TERMINAL PROTEASE NPRO AT PH 3 CRYSTAL STRUCTURE OF SUBSTRATE-LIKE, UNPROCESSED N- TERMINAL PROTEASE NPRO MUTANT S169P WITH SULPHATE PDBE Y PDBE 2012-12-12 REL REL SGM MONOTHIOGLYCEROL CL CHLORIDE ION HOH water 3ZFN PDB ENTRY 3ZFN PDB experimental model SGM 1169 2 SGM SGM 1169 A CL 1170 3 CL CL 1170 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2108 4 HOH HOH 2108 A HOH 2109 4 HOH HOH 2109 A HOH 2110 4 HOH HOH 2110 A HOH 2111 4 HOH HOH 2111 A HOH 2112 4 HOH HOH 2112 A HOH 2113 4 HOH HOH 2113 A HOH 2114 4 HOH HOH 2114 A HOH 2115 4 HOH HOH 2115 A HOH 2116 4 HOH HOH 2116 A HOH 2117 4 HOH HOH 2117 A HOH 2118 4 HOH HOH 2118 A HOH 2119 4 HOH HOH 2119 A HOH 2120 4 HOH HOH 2120 A HOH 2121 4 HOH HOH 2121 A HOH 2122 4 HOH HOH 2122 A HOH 2123 4 HOH HOH 2123 A HOH 2124 4 HOH HOH 2124 A HOH 2125 4 HOH HOH 2125 A HOH 2126 4 HOH HOH 2126 A HOH 2127 4 HOH HOH 2127 A HOH 2128 4 HOH HOH 2128 A HOH 2129 4 HOH HOH 2129 A HOH 2130 4 HOH HOH 2130 A HOH 2131 4 HOH HOH 2131 A HOH 2132 4 HOH HOH 2132 A HOH 2133 4 HOH HOH 2133 A HOH 2134 4 HOH HOH 2134 A HOH 2135 4 HOH HOH 2135 A HOH 2136 4 HOH HOH 2136 A HOH 2137 4 HOH HOH 2137 A HOH 2138 4 HOH HOH 2138 A HOH 2139 4 HOH HOH 2139 A HOH 2140 4 HOH HOH 2140 A HOH 2141 4 HOH HOH 2141 A HOH 2142 4 HOH HOH 2142 A HOH 2143 4 HOH HOH 2143 A HOH 2144 4 HOH HOH 2144 A HOH 2145 4 HOH HOH 2145 A HOH 2146 4 HOH HOH 2146 A HOH 2147 4 HOH HOH 2147 A HOH 2148 4 HOH HOH 2148 A HOH 2149 4 HOH HOH 2149 A HOH 2150 4 HOH HOH 2150 A HOH 2151 4 HOH HOH 2151 A HOH 2152 4 HOH HOH 2152 A HOH 2153 4 HOH HOH 2153 A HOH 2154 4 HOH HOH 2154 A HOH 2155 4 HOH HOH 2155 A HOH 2156 4 HOH HOH 2156 A HOH 2157 4 HOH HOH 2157 A HOH 2158 4 HOH HOH 2158 A HOH 2159 4 HOH HOH 2159 A HOH 2160 4 HOH HOH 2160 A HOH 2161 4 HOH HOH 2161 A HOH 2162 4 HOH HOH 2162 A HOH 2163 4 HOH HOH 2163 A HOH 2164 4 HOH HOH 2164 A HOH 2165 4 HOH HOH 2165 A HOH 2166 4 HOH HOH 2166 A HOH 2167 4 HOH HOH 2167 A HOH 2168 4 HOH HOH 2168 A HOH 2169 4 HOH HOH 2169 A HOH 2170 4 HOH HOH 2170 A HOH 2171 4 HOH HOH 2171 A HOH 2172 4 HOH HOH 2172 A HOH 2173 4 HOH HOH 2173 A HOH 2174 4 HOH HOH 2174 A HOH 2175 4 HOH HOH 2175 A HOH 2176 4 HOH HOH 2176 A HOH 2177 4 HOH HOH 2177 A HOH 2178 4 HOH HOH 2178 A HOH 2179 4 HOH HOH 2179 A HOH 2180 4 HOH HOH 2180 A HOH 2181 4 HOH HOH 2181 A HOH 2182 4 HOH HOH 2182 A HOH 2183 4 HOH HOH 2183 A HOH 2184 4 HOH HOH 2184 A MET 21 n 1 MET 21 A GLU 22 n 2 GLU 22 A PRO 23 n 3 PRO 23 A LEU 24 n 4 LEU 24 A TYR 25 n 5 TYR 25 A ASP 26 n 6 ASP 26 A LYS 27 n 7 LYS 27 A ASN 28 n 8 ASN 28 A GLY 29 n 9 GLY 29 A ALA 30 n 10 ALA 30 A VAL 31 n 11 VAL 31 A LEU 32 n 12 LEU 32 A PHE 33 n 13 PHE 33 A GLY 34 n 14 GLY 34 A GLU 35 n 15 GLU 35 A PRO 36 n 16 PRO 36 A SER 37 n 17 SER 37 A ASP 38 n 18 ASP 38 A THR 39 n 19 THR 39 A HIS 40 n 20 HIS 40 A PRO 41 n 21 PRO 41 A GLN 42 n 22 GLN 42 A SER 43 n 23 SER 43 A THR 44 n 24 THR 44 A LEU 45 n 25 LEU 45 A LYS 46 n 26 LYS 46 A LEU 47 n 27 LEU 47 A PRO 48 n 28 PRO 48 A HIS 49 n 29 HIS 49 A PRO 50 n 30 PRO 50 A ARG 51 n 31 ARG 51 A GLY 52 n 32 GLY 52 A GLU 53 n 33 GLU 53 A LYS 54 n 34 LYS 54 A GLU 55 n 35 GLU 55 A VAL 56 n 36 VAL 56 A ILE 57 n 37 ILE 57 A VAL 58 n 38 VAL 58 A GLY 59 n 39 GLY 59 A ILE 60 n 40 ILE 60 A ARG 61 n 41 ARG 61 A ASP 62 n 42 ASP 62 A LEU 63 n 43 LEU 63 A PRO 64 n 44 PRO 64 A ARG 65 n 45 ARG 65 A LYS 66 n 46 LYS 66 A GLY 67 n 47 GLY 67 A ASP 68 n 48 ASP 68 A CYS 69 n 49 CYS 69 A ARG 70 n 50 ARG 70 A THR 71 n 51 THR 71 A GLY 72 n 52 GLY 72 A ASN 73 n 53 ASN 73 A ARG 74 n 54 ARG 74 A LEU 75 n 55 LEU 75 A GLY 76 n 56 GLY 76 A PRO 77 n 57 PRO 77 A VAL 78 n 58 VAL 78 A SER 79 n 59 SER 79 A GLY 80 n 60 GLY 80 A LEU 81 n 61 LEU 81 A PHE 82 n 62 PHE 82 A VAL 83 n 63 VAL 83 A LYS 84 n 64 LYS 84 A PRO 85 n 65 PRO 85 A GLY 86 n 66 GLY 86 A PRO 87 n 67 PRO 87 A VAL 88 n 68 VAL 88 A PHE 89 n 69 PHE 89 A TYR 90 n 70 TYR 90 A GLN 91 n 71 GLN 91 A ASP 92 n 72 ASP 92 A TYR 93 n 73 TYR 93 A SER 94 n 74 SER 94 A GLY 95 n 75 GLY 95 A PRO 96 n 76 PRO 96 A VAL 97 n 77 VAL 97 A TYR 98 n 78 TYR 98 A HIS 99 n 79 HIS 99 A ARG 100 n 80 ARG 100 A ALA 101 n 81 ALA 101 A PRO 102 n 82 PRO 102 A LEU 103 n 83 LEU 103 A GLU 104 n 84 GLU 104 A GLN 105 n 85 GLN 105 A PHE 106 n 86 PHE 106 A LYS 107 n 87 LYS 107 A GLN 108 n 88 GLN 108 A ALA 109 n 89 ALA 109 A PRO 110 n 90 PRO 110 A MET 111 n 91 MET 111 A CYS 112 n 92 CYS 112 A GLU 113 n 93 GLU 113 A VAL 114 n 94 VAL 114 A THR 115 n 95 THR 115 A LYS 116 n 96 LYS 116 A ARG 117 n 97 ARG 117 A ILE 118 n 98 ILE 118 A GLY 119 n 99 GLY 119 A ARG 120 n 100 ARG 120 A VAL 121 n 101 VAL 121 A THR 122 n 102 THR 122 A GLY 123 n 103 GLY 123 A SER 124 n 104 SER 124 A ASP 125 n 105 ASP 125 A GLY 126 n 106 GLY 126 A ASN 127 n 107 ASN 127 A LEU 128 n 108 LEU 128 A TYR 129 n 109 TYR 129 A HIS 130 n 110 HIS 130 A MET 131 n 111 MET 131 A TYR 132 n 112 TYR 132 A VAL 133 n 113 VAL 133 A CYS 134 n 114 CYS 134 A THR 135 n 115 THR 135 A ASP 136 n 116 ASP 136 A GLY 137 n 117 GLY 137 A CYS 138 n 118 CYS 138 A ILE 139 n 119 ILE 139 A LEU 140 n 120 LEU 140 A VAL 141 n 121 VAL 141 A LYS 142 n 122 LYS 142 A THR 143 n 123 THR 143 A ALA 144 n 124 ALA 144 A LYS 145 n 125 LYS 145 A HIS 146 n 126 HIS 146 A HIS 147 n 127 HIS 147 A HIS 148 n 128 HIS 148 A HIS 149 n 129 HIS 149 A HIS 150 n 130 HIS 150 A VAL 151 n 131 VAL 151 A LEU 152 n 132 LEU 152 A LYS 153 n 133 LYS 153 A TRP 154 n 134 TRP 154 A VAL 155 n 135 VAL 155 A TYR 156 n 136 TYR 156 A ASN 157 n 137 ASN 157 A VAL 158 n 138 VAL 158 A LEU 159 n 139 LEU 159 A ASP 160 n 140 ASP 160 A SER 161 n 141 SER 161 A PRO 162 n 142 PRO 162 A ILE 163 n 143 ILE 163 A TRP 164 n 144 TRP 164 A VAL 165 n 145 VAL 165 A THR 166 n 146 THR 166 A SER 167 n 147 SER 167 A CYS 168 n 148 CYS 168 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 58 A N VAL 38 A O PHE 89 A O PHE 69 A O GLN 91 A O GLN 71 A N GLY 80 A N GLY 60 A N VAL 83 A N VAL 63 A O ILE 163 A O ILE 143 A N LYS 107 A N LYS 87 A O LYS 153 A O LYS 133 A N TRP 154 A N TRP 134 A O ILE 139 A O ILE 119 A N LYS 142 A N LYS 122 A O HIS 130 A O HIS 110 A O VAL 133 A O VAL 113 A N THR 115 A N THR 95 1 A CB LYS 145 A CB LYS 125 0 Y 1 A CG LYS 145 A CG LYS 125 0 Y 1 A CD LYS 145 A CD LYS 125 0 Y 1 A CE LYS 145 A CE LYS 125 0 Y 1 A NZ LYS 145 A NZ LYS 125 0 Y 1 A CB HIS 146 A CB HIS 126 0 Y 1 A CG HIS 146 A CG HIS 126 0 Y 1 A ND1 HIS 146 A ND1 HIS 126 0 Y 1 A CD2 HIS 146 A CD2 HIS 126 0 Y 1 A CE1 HIS 146 A CE1 HIS 126 0 Y 1 A NE2 HIS 146 A NE2 HIS 126 0 Y 1 A CB HIS 147 A CB HIS 127 0 Y 1 A CG HIS 147 A CG HIS 127 0 Y 1 A ND1 HIS 147 A ND1 HIS 127 0 Y 1 A CD2 HIS 147 A CD2 HIS 127 0 Y 1 A CE1 HIS 147 A CE1 HIS 127 0 Y 1 A NE2 HIS 147 A NE2 HIS 127 0 Y 1 A CB HIS 148 A CB HIS 128 0 Y 1 A CG HIS 148 A CG HIS 128 0 Y 1 A ND1 HIS 148 A ND1 HIS 128 0 Y 1 A CD2 HIS 148 A CD2 HIS 128 0 Y 1 A CE1 HIS 148 A CE1 HIS 128 0 Y 1 A NE2 HIS 148 A NE2 HIS 128 0 Y 1 A CB HIS 149 A CB HIS 129 0 Y 1 A CG HIS 149 A CG HIS 129 0 Y 1 A ND1 HIS 149 A ND1 HIS 129 0 Y 1 A CD2 HIS 149 A CD2 HIS 129 0 Y 1 A CE1 HIS 149 A CE1 HIS 129 0 Y 1 A NE2 HIS 149 A NE2 HIS 129 0 Y 1 A CG HIS 150 A CG HIS 130 0 Y 1 A ND1 HIS 150 A ND1 HIS 130 0 Y 1 A CD2 HIS 150 A CD2 HIS 130 0 Y 1 A CE1 HIS 150 A CE1 HIS 130 0 Y 1 A NE2 HIS 150 A NE2 HIS 130 0 Y 1 -7.16 0.90 118.30 111.14 A A A CB CG OD2 ASP ASP ASP 26 26 26 N 1 6.90 0.90 118.30 125.20 A A A CB CG OD1 ASP ASP ASP 38 38 38 N 1 4.99 0.50 120.30 125.29 A A A NE CZ NH1 ARG ARG ARG 51 51 51 N 1 -3.29 0.50 120.30 117.01 A A A NE CZ NH2 ARG ARG ARG 51 51 51 N 1 -3.87 0.50 120.30 116.43 A A A NE CZ NH2 ARG ARG ARG 61 61 61 N 1 6.87 0.90 118.30 125.17 A A A CB CG OD1 ASP ASP ASP 92 92 92 N 1 -4.00 0.60 121.00 117.00 A A A CB CG CD2 TYR TYR TYR 93 93 93 N 1 A A CG CD2 TYR TYR 90 90 -0.083 0.013 1.387 1.304 N 1 A LYS 145 -109.03 -140.05 1 A HIS 147 86.75 5.00 1 A HIS 149 88.97 16.67 15.167 0.33 0.00 -2.10 0.18 0.00 0.33 0.975 0.958 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES 145-150 DISORDERED 0.20662 0.15839 0.16082 1.25 21.17 1927 36027 5.1 98.87 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.049 0.052 0.80 0.80 1.20 PDB ENTRY 3ZFN MAXIMUM LIKELIHOOD MASK 1.25 21.17 184 1362 7 0 1171 0.026 0.019 1236 0.000 0.020 1179 2.604 1.983 1701 3.719 3.005 2731 7.814 5.000 170 37.341 23.125 48 15.196 15.000 202 8.889 15.000 8 0.153 0.200 188 0.014 0.021 1408 0.030 0.020 272 23.435 3.000 2415 56.890 5.000 50 23.493 5.000 2505 0.279 0.292 1.282 129 2610 20 96.89 1.25 20.50 3ZFP 37962 -3.0 0.05 1 12.40 3.7 98.9 0.49 1.25 1.32 2.60 1 3.7 97.4 refinement REFMAC 5.7.0029 data reduction iMOSFLM data scaling SCALA phasing MOLREP Crystal structure of product-like, processed N-terminal protease Npro with internal His-Tag 1 N N 2 N N 3 N N 4 N N A GLY 59 A GLY 39 HELX_P A LEU 63 A LEU 43 5 1 5 A ARG 65 A ARG 45 HELX_P A CYS 69 A CYS 49 5 2 5 A PRO 102 A PRO 82 HELX_P A GLU 104 A GLU 84 5 3 3 disulf 2.087 A A A CYS 69 A SG CYS 49 1_555 A CYS 168 A SG CYS 148 1_555 disulf 2.008 B B A CYS 69 A SG CYS 49 1_555 A CYS 168 A SG CYS 148 1_555 disulf 2.083 A CYS 112 A SG CYS 92 1_555 A CYS 134 A SG CYS 114 1_555 covale 2.071 none A A CYS 138 A SG CYS 118 1_555 A SGM 1169 B S1 SGM 1_555 HYDROLASE HYDROLASE, AUTO-PROCESSING CYSTEINE PROTEASE, VIRAL PROTEASE, IN CIS- CLEAVAGE, HYDROXIDE-DEPENDENT CATALYSIS, AUTO-PROTEOLYSIS, IMMUNE MODULATION, HOST-PATHOGEN INTERACTION, CONVERGENT EVOLUTION, PESTIVIRUS A LEU 47 A LEU 27 1 A PRO 48 A PRO 28 -0.60 A GLY 86 A GLY 66 1 A PRO 87 A PRO 67 -5.92 Q5L4B1_9FLAV UNP 1 Q5L4B1 22 168 3ZFP 22 168 Q5L4B1 A 1 2 148 1 expression tag MET 21 3ZFP A Q5L4B1 UNP 1 1 ARG engineered mutation HIS 146 3ZFP A Q5L4B1 UNP 146 126 1 GLU engineered mutation HIS 147 3ZFP A Q5L4B1 UNP 147 127 1 GLY engineered mutation HIS 148 3ZFP A Q5L4B1 UNP 148 128 1 GLN engineered mutation HIS 149 3ZFP A Q5L4B1 UNP 149 129 1 ASP engineered mutation HIS 150 3ZFP A Q5L4B1 UNP 150 130 1 ALA engineered mutation THR 166 3ZFP A Q5L4B1 UNP 166 146 4 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 56 A VAL 36 A VAL 58 A VAL 38 A VAL 88 A VAL 68 A ASP 92 A ASP 72 A GLY 80 A GLY 60 A LYS 84 A LYS 64 A ILE 163 A ILE 143 A SER 167 A SER 147 A PHE 106 A PHE 86 A GLN 108 A GLN 88 A VAL 151 A VAL 131 A TRP 154 A TRP 134 A ILE 139 A ILE 119 A THR 143 A THR 123 A LEU 128 A LEU 108 A CYS 134 A CYS 114 A VAL 114 A VAL 94 A THR 122 A THR 102 BINDING SITE FOR RESIDUE SGM A 1169 A SGM 1169 Software 6 BINDING SITE FOR RESIDUE CL A 1170 A CL 1170 Software 5 A PRO 85 A PRO 65 6 1_555 A CYS 138 A CYS 118 6 1_555 A TRP 154 A TRP 134 6 1_555 A VAL 155 A VAL 135 6 1_555 A HOH 2170 D HOH 6 1_555 A HOH 2183 D HOH 6 1_555 A GLU 22 A GLU 2 5 1_555 A GLN 105 A GLN 85 5 1_555 A HOH 2004 D HOH 5 1_555 A HOH 2129 D HOH 5 1_555 A HOH 2133 D HOH 5 1_555 4 P 1 21 1