1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lecoq, L. Triboulet, S. Dubee, V. Bougault, C. Hugonnet, J.E. Arthur, M. Simorre, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C22 H27 N3 O7 S 477.531 (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid ERTAPENEM, bound form PRE-ISOMERIZED non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Acs Chem.Biol. 1554-8929 8 1140 1146 10.1021/cb4001603 23574509 The Structure of Enterococcus Faecium L,D---Transpeptidase Acylated by Ertapenem Provides Insight Into the Inactivation Mechanism. 2013 10.2210/pdb3zgp/pdb pdb_00003zgp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ERTAPENEM ANTIBIOTIC IS COVALENTLY LINKED TO THE CYSTEINE OF THE ENZYME. 14572.148 ERFK/YBIS/YCFS/YNHG 2.3.2.12 CATALYTIC DOMAIN, RESIDUES 341-466 1 man polymer 477.531 (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid 1 syn non-polymer LDTFM-ERTAPENEM no no GHMEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPVNYWMPIDWTG VGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVEKGTPVLVF GHMEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPVNYWMPIDWTG VGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVEKGTPVLVF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1352 ENTEROCOCCUS FAECIUM 469008 ESCHERICHIA COLI BL21(DE3) PLASMID PETTEV citation pdbx_nmr_spectrometer atom_site database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer struct_conn struct_site repository Initial release Database references Atomic model Derived calculations Non-polymer description Other Data collection Database references Atomic model Data collection Database references Derived calculations Other 1 0 2013-04-24 1 1 2013-08-28 1 2 2014-02-12 1 3 2018-01-24 2 0 2023-06-14 _citation.page_last _citation.pdbx_database_id_DOI _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_cs _pdbx_database_status.status_code_mr _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NMR STRUCTURE OF THE CATALYTIC DOMAIN FROM E. FAECIUM L,D-TRANSPEPTIDASE PDBE Y PDBE 2012-12-18 REL REL REL REL 1RG (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid THE 20 NMR STRUCTURES WERE DETERMINED USING TRIPLE- RESONANCE NMR SPECTROSCOPY ON A 13C, 15N-LABELED LDTFM SAMPLE INCUBATED WITH 1 EQUIVALENT OF ERTAPENEM ANTIBIOTIC. THESE STRUCTURES WERE REFINED IN WATER WITHIN CNS ARIA. TOTAL ENERGY 1700 20 1H-15N-HSQC 1H-13C-HSQC CENTERED ON ALIPHATICS 1H-15N-HMQC DETECTING 2J 3J COUPLINGS IN HISTIDINES IMIDAZOLE RING HSQC DETECTING 1J COUPLING IN HISTIDINES IMIDAZOLE RING HNCACB HNCO 3D-15N-NOESY-HSQC 3D-13C-NOESY-HSQC CENTERED ON ALIPHATICS 1H-13C- HSQC CENTERED ON AROMATICS 3D-13C-NOESY-HSQC CENTERED ON AROMATICS 13C-15N-FILTERED NOESY 300 mM 6.4 pH 1.0 atm 298.0 K ARIA2.3 1 10% WATER/90% D2O 100% D2O BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN refinement CNS structure solution UNIO 10 structure solution TALOS structure solution CcpNmr Analysis ANALYSIS 600 Agilent Direct Drive 600 Bruker Direct Drive 600 Agilent Direct Drive 600 Agilent Direct Drive 600 Agilent Direct Drive 800 Agilent Direct Drive 950 Bruker AVANCE 800 Agilent Direct Drive 800 Agilent Direct Drive 1RG 130 2 1RG 1RG 130 A GLY 338 n 1 GLY 338 A HIS 339 n 2 HIS 339 A MET 340 n 3 MET 340 A GLU 341 n 4 GLU 341 A ASP 342 n 5 ASP 342 A THR 343 n 6 THR 343 A TYR 344 n 7 TYR 344 A ILE 345 n 8 ILE 345 A GLU 346 n 9 GLU 346 A VAL 347 n 10 VAL 347 A ASP 348 n 11 ASP 348 A LEU 349 n 12 LEU 349 A GLU 350 n 13 GLU 350 A ASN 351 n 14 ASN 351 A GLN 352 n 15 GLN 352 A HIS 353 n 16 HIS 353 A MET 354 n 17 MET 354 A TRP 355 n 18 TRP 355 A TYR 356 n 19 TYR 356 A TYR 357 n 20 TYR 357 A LYS 358 n 21 LYS 358 A ASP 359 n 22 ASP 359 A GLY 360 n 23 GLY 360 A LYS 361 n 24 LYS 361 A VAL 362 n 25 VAL 362 A ALA 363 n 26 ALA 363 A LEU 364 n 27 LEU 364 A GLU 365 n 28 GLU 365 A THR 366 n 29 THR 366 A ASP 367 n 30 ASP 367 A ILE 368 n 31 ILE 368 A VAL 369 n 32 VAL 369 A SER 370 n 33 SER 370 A GLY 371 n 34 GLY 371 A LYS 372 n 35 LYS 372 A PRO 373 n 36 PRO 373 A THR 374 n 37 THR 374 A THR 375 n 38 THR 375 A PRO 376 n 39 PRO 376 A THR 377 n 40 THR 377 A PRO 378 n 41 PRO 378 A ALA 379 n 42 ALA 379 A GLY 380 n 43 GLY 380 A VAL 381 n 44 VAL 381 A PHE 382 n 45 PHE 382 A TYR 383 n 46 TYR 383 A VAL 384 n 47 VAL 384 A TRP 385 n 48 TRP 385 A ASN 386 n 49 ASN 386 A LYS 387 n 50 LYS 387 A GLU 388 n 51 GLU 388 A GLU 389 n 52 GLU 389 A ASP 390 n 53 ASP 390 A ALA 391 n 54 ALA 391 A THR 392 n 55 THR 392 A LEU 393 n 56 LEU 393 A LYS 394 n 57 LYS 394 A GLY 395 n 58 GLY 395 A THR 396 n 59 THR 396 A ASN 397 n 60 ASN 397 A ASP 398 n 61 ASP 398 A ASP 399 n 62 ASP 399 A GLY 400 n 63 GLY 400 A THR 401 n 64 THR 401 A PRO 402 n 65 PRO 402 A TYR 403 n 66 TYR 403 A GLU 404 n 67 GLU 404 A SER 405 n 68 SER 405 A PRO 406 n 69 PRO 406 A VAL 407 n 70 VAL 407 A ASN 408 n 71 ASN 408 A TYR 409 n 72 TYR 409 A TRP 410 n 73 TRP 410 A MET 411 n 74 MET 411 A PRO 412 n 75 PRO 412 A ILE 413 n 76 ILE 413 A ASP 414 n 77 ASP 414 A TRP 415 n 78 TRP 415 A THR 416 n 79 THR 416 A GLY 417 n 80 GLY 417 A VAL 418 n 81 VAL 418 A GLY 419 n 82 GLY 419 A ILE 420 n 83 ILE 420 A HIS 421 n 84 HIS 421 A ASP 422 n 85 ASP 422 A SER 423 n 86 SER 423 A ASP 424 n 87 ASP 424 A TRP 425 n 88 TRP 425 A GLN 426 n 89 GLN 426 A PRO 427 n 90 PRO 427 A GLU 428 n 91 GLU 428 A TYR 429 n 92 TYR 429 A GLY 430 n 93 GLY 430 A GLY 431 n 94 GLY 431 A ASP 432 n 95 ASP 432 A LEU 433 n 96 LEU 433 A TRP 434 n 97 TRP 434 A LYS 435 n 98 LYS 435 A THR 436 n 99 THR 436 A ARG 437 n 100 ARG 437 A GLY 438 n 101 GLY 438 A SER 439 n 102 SER 439 A HIS 440 n 103 HIS 440 A GLY 441 n 104 GLY 441 A CYS 442 n 105 CYS 442 A ILE 443 n 106 ILE 443 A ASN 444 n 107 ASN 444 A THR 445 n 108 THR 445 A PRO 446 n 109 PRO 446 A PRO 447 n 110 PRO 447 A SER 448 n 111 SER 448 A VAL 449 n 112 VAL 449 A MET 450 n 113 MET 450 A LYS 451 n 114 LYS 451 A GLU 452 n 115 GLU 452 A LEU 453 n 116 LEU 453 A PHE 454 n 117 PHE 454 A GLY 455 n 118 GLY 455 A MET 456 n 119 MET 456 A VAL 457 n 120 VAL 457 A GLU 458 n 121 GLU 458 A LYS 459 n 122 LYS 459 A GLY 460 n 123 GLY 460 A THR 461 n 124 THR 461 A PRO 462 n 125 PRO 462 A VAL 463 n 126 VAL 463 A LEU 464 n 127 LEU 464 A VAL 465 n 128 VAL 465 A PHE 466 n 129 PHE 466 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 348 A N ASP 11 A O HIS 353 A O HIS 16 A N LYS 358 A N LYS 21 A O LYS 361 A O LYS 24 A N PHE 382 A N PHE 45 A O VAL 463 A O VAL 126 A N GLU 388 A N GLU 51 A O TRP 410 A O TRP 73 A N MET 411 A N MET 74 A O ILE 420 A O ILE 83 A N HIS 421 A N HIS 84 A O ILE 443 A O ILE 106 A N GLY 395 A N GLY 58 A O TYR 403 A O TYR 66 1 A A OD2 HE1 ASP TRP 432 434 1.56 1 A A O H LEU ARG 433 437 1.56 1 A A H O MET THR 354 366 1.58 1 A A H O PHE VAL 382 463 1.60 2 A A O H LEU ARG 433 437 1.58 2 A A OD1 HD21 ASP ASN 348 351 1.60 3 A A HH HNAJ TYR 1RG 403 130 1.29 3 A A O H LEU ARG 433 437 1.58 4 A A HH HD3 TYR PRO 429 447 1.19 4 A A OD1 HD21 ASP ASN 348 351 1.57 4 A A H O MET THR 354 366 1.58 4 A A O H LEU ARG 433 437 1.59 5 A A HG22 HH THR TYR 343 356 1.31 5 A A CG2 HH THR TYR 343 356 1.53 5 A A OD1 HD21 ASP ASN 348 351 1.60 6 A A HH HD3 TYR PRO 429 447 1.17 6 A A HH HNAJ TYR 1RG 403 130 1.26 6 A A O H LEU ARG 433 437 1.58 6 A A O H GLU TRP 346 355 1.59 6 A A OD1 HD21 ASP ASN 348 351 1.60 7 A A HH HD3 TYR PRO 429 447 1.17 7 A A HG22 HH THR TYR 343 356 1.27 7 A A HH HNAJ TYR 1RG 403 130 1.34 7 A A O H LEU ARG 433 437 1.55 7 A A CG2 HH THR TYR 343 356 1.58 7 A A OD1 HD21 ASP ASN 348 351 1.59 8 A A HG22 HH THR TYR 343 356 1.28 8 A A CG2 HH THR TYR 343 356 1.56 9 A A HH HNAJ TYR 1RG 403 130 1.21 9 A A O H LEU ARG 433 437 1.57 10 A A HH HD3 TYR PRO 429 447 1.30 10 A A O H LEU ARG 433 437 1.59 10 A A OD1 HD21 ASP ASN 348 351 1.59 11 A A HH HD3 TYR PRO 429 447 1.28 11 A A HG22 HH THR TYR 343 356 1.33 11 A A O H LEU ARG 433 437 1.56 11 A A O H GLU TRP 346 355 1.56 11 A A CG2 HH THR TYR 343 356 1.59 11 A A OE1 H GLU VAL 346 347 1.60 12 A A HH HNAJ TYR 1RG 403 130 1.34 12 A A O H GLU TRP 346 355 1.56 12 A A OE1 H GLU VAL 346 347 1.57 12 A A O H LEU ARG 433 437 1.59 12 A A OD1 HD21 ASP ASN 348 351 1.59 13 A A O H LEU ARG 433 437 1.58 13 A A H O MET THR 354 366 1.60 13 A A H O GLY VAL 380 465 1.60 13 A A OD1 HD21 ASP ASN 348 351 1.60 14 A A HH HD3 TYR PRO 429 447 1.08 14 A A HG22 HH THR TYR 343 356 1.29 14 A A CG2 HH THR TYR 343 356 1.58 14 A A OD1 HD21 ASP ASN 348 351 1.60 15 A A HH HD3 TYR PRO 429 447 1.18 16 A A HH HNAJ TYR 1RG 403 130 1.19 16 A A HH HD3 TYR PRO 429 447 1.26 16 A A HG22 HH THR TYR 343 356 1.33 16 A A CG2 HH THR TYR 343 356 1.55 16 A A OD1 HE1 ASP TRP 432 434 1.55 16 A A O H LEU ARG 433 437 1.57 16 A A O H GLU TRP 346 355 1.57 16 A A OD1 HD21 ASP ASN 348 351 1.57 16 A A H O MET THR 354 366 1.59 17 A A O H GLU TRP 346 355 1.56 17 A A CG2 HH THR TYR 343 356 1.60 18 A A O H LEU ARG 433 437 1.54 18 A A OD1 HD21 ASP ASN 348 351 1.60 19 A A O H GLU TRP 346 355 1.55 19 A A O H LEU ARG 433 437 1.56 19 A A O H VAL PHE 347 466 1.57 19 A A OE1 H GLU VAL 346 347 1.57 19 A A OD1 HD21 ASP ASN 348 351 1.59 20 A A HH HD3 TYR PRO 429 447 1.21 20 A A O H GLU TRP 346 355 1.56 20 A A H O MET THR 354 366 1.60 20 A A OE1 H GLU VAL 346 347 1.60 4 A TYR 409 0.061 SIDE CHAIN 5 A TYR 356 0.090 SIDE CHAIN 5 A TYR 409 0.054 SIDE CHAIN 7 A TYR 356 0.085 SIDE CHAIN 7 A TYR 409 0.056 SIDE CHAIN 8 A TYR 356 0.090 SIDE CHAIN 8 A TYR 409 0.070 SIDE CHAIN 9 A TYR 409 0.052 SIDE CHAIN 11 A TYR 356 0.088 SIDE CHAIN 11 A TYR 409 0.059 SIDE CHAIN 12 A TYR 409 0.052 SIDE CHAIN 14 A TYR 356 0.088 SIDE CHAIN 14 A TYR 409 0.060 SIDE CHAIN 15 A TYR 409 0.061 SIDE CHAIN 16 A TYR 356 0.091 SIDE CHAIN 17 A TYR 356 0.087 SIDE CHAIN 18 A TYR 409 0.066 SIDE CHAIN 19 A TYR 409 0.060 SIDE CHAIN 6 A A CZ CE2 PHE PHE 454 454 0.119 0.019 1.369 1.488 N 10 A A CZ CE2 PHE PHE 454 454 0.116 0.019 1.369 1.485 N 16 A A CZ CE2 PHE PHE 454 454 0.125 0.019 1.369 1.494 N 17 A A CZ CE2 PHE PHE 454 454 0.127 0.019 1.369 1.496 N 18 A A CZ CE2 PHE PHE 454 454 0.121 0.019 1.369 1.490 N 20 A A CE1 CZ PHE PHE 454 454 -0.123 0.019 1.369 1.246 N 20 A A CZ CE2 PHE PHE 454 454 0.144 0.019 1.369 1.513 N 1 A MET 340 57.23 -166.55 1 A TYR 344 174.61 158.39 1 A GLN 352 28.80 63.86 1 A SER 370 -78.63 -168.08 1 A ALA 379 57.67 137.88 1 A ASP 398 -55.71 -7.58 1 A PRO 412 -68.24 83.38 1 A TRP 415 50.79 -2.45 1 A VAL 418 -56.86 172.67 1 A ASP 432 -53.48 102.98 1 A HIS 440 35.13 -121.44 1 A LYS 459 -56.36 103.03 2 A MET 340 60.93 -168.61 2 A GLU 341 -58.73 171.20 2 A TYR 344 174.64 158.09 2 A GLN 352 34.79 61.15 2 A SER 370 -77.69 -168.83 2 A ALA 379 62.48 138.59 2 A PRO 412 -66.92 75.94 2 A TRP 415 82.91 -56.73 2 A VAL 418 -56.19 173.08 2 A ASP 432 -52.01 101.89 2 A HIS 440 34.18 -120.65 2 A CYS 442 -103.62 -165.63 2 A LYS 459 -57.28 102.99 3 A MET 340 62.01 -167.23 3 A TYR 344 174.15 158.82 3 A GLN 352 32.69 63.54 3 A SER 370 -79.42 -167.98 3 A ALA 379 61.49 138.05 3 A PRO 412 -67.81 73.76 3 A TRP 415 52.14 -0.99 3 A VAL 418 -56.85 172.33 3 A ASP 432 -52.57 100.80 3 A HIS 440 33.54 -117.61 3 A CYS 442 -103.57 -166.56 3 A LYS 459 -59.34 101.86 4 A MET 340 60.97 -172.15 4 A GLU 341 -63.92 -179.50 4 A TYR 344 173.02 159.70 4 A GLN 352 32.93 61.27 4 A ALA 379 59.49 138.52 4 A ASP 390 39.51 47.66 4 A ASP 398 -58.70 -2.60 4 A PRO 412 -67.63 76.14 4 A TRP 415 82.80 -67.29 4 A VAL 418 -56.26 172.81 4 A ASP 432 -51.47 102.35 4 A HIS 440 35.99 -115.69 4 A LYS 459 -55.96 102.14 5 A MET 340 56.22 -162.58 5 A GLU 341 -80.02 -153.21 5 A TYR 344 174.63 157.84 5 A GLN 352 32.82 62.35 5 A ASP 359 75.97 41.26 5 A SER 370 -77.95 -168.92 5 A ALA 379 59.19 137.73 5 A ASN 386 -170.33 128.18 5 A ASP 398 -59.00 -2.52 5 A TRP 415 155.16 -23.19 5 A VAL 418 -54.91 173.31 5 A ASP 432 -50.53 101.03 5 A HIS 440 36.35 -121.59 5 A CYS 442 -104.27 -166.59 5 A LYS 459 -59.31 103.27 6 A MET 340 61.99 -165.26 6 A TYR 344 174.85 157.32 6 A GLN 352 34.96 61.54 6 A SER 370 -79.74 -168.49 6 A ALA 379 60.21 139.24 6 A PRO 412 -67.74 74.14 6 A TRP 415 56.59 -3.20 6 A VAL 418 -56.92 173.02 6 A ASP 432 -52.59 101.29 6 A HIS 440 46.11 -145.00 6 A CYS 442 -101.57 -165.43 6 A LYS 459 -58.66 103.20 7 A MET 340 63.20 -166.92 7 A TYR 344 174.22 159.18 7 A GLN 352 35.09 61.32 7 A SER 370 -78.25 -169.06 7 A ALA 379 59.84 138.96 7 A ASN 386 -170.79 127.89 7 A ASP 398 -59.35 -3.23 7 A PRO 412 -68.52 67.61 7 A TRP 415 50.61 1.92 7 A VAL 418 -59.51 172.77 7 A ASP 432 -51.33 102.68 7 A HIS 440 37.07 -111.19 7 A CYS 442 -100.04 -167.99 7 A LYS 459 -58.91 102.10 8 A MET 340 65.19 -166.11 8 A TYR 344 174.27 158.70 8 A GLN 352 34.79 61.61 8 A SER 370 -77.84 -169.39 8 A ALA 379 58.24 136.15 8 A ASP 398 -57.02 -1.80 8 A PRO 412 -68.39 67.91 8 A TRP 415 83.83 -47.73 8 A VAL 418 -55.04 173.57 8 A ASP 432 -51.90 101.72 8 A HIS 440 38.98 -130.17 8 A CYS 442 -102.44 -165.35 8 A LYS 459 -57.82 101.64 9 A MET 340 62.46 -166.82 9 A TYR 344 174.56 158.30 9 A GLN 352 33.62 60.63 9 A SER 370 -78.84 -168.46 9 A ALA 379 60.27 137.13 9 A PRO 412 -67.71 70.40 9 A TRP 415 58.03 -8.92 9 A VAL 418 -59.53 173.23 9 A ASP 432 -50.91 101.43 9 A HIS 440 40.12 -129.73 9 A CYS 442 -103.77 -165.71 9 A LYS 459 -59.07 101.75 10 A MET 340 61.87 -165.93 10 A TYR 344 174.42 158.63 10 A GLN 352 33.53 61.70 10 A SER 370 -79.86 -168.14 10 A ALA 379 60.96 134.60 10 A PRO 412 -68.13 67.68 10 A TRP 415 52.88 -0.43 10 A VAL 418 -58.97 172.66 10 A ASP 432 -50.58 101.80 10 A HIS 440 32.59 -112.16 10 A CYS 442 -104.59 -166.32 10 A LYS 459 -55.76 102.73 11 A MET 340 60.79 -162.95 11 A TYR 344 174.73 158.38 11 A GLN 352 32.78 61.44 11 A SER 370 -78.73 -168.60 11 A ALA 379 54.99 137.83 11 A PRO 412 -66.35 83.41 11 A TRP 415 86.38 -58.54 11 A VAL 418 -53.73 170.14 11 A ASP 432 -51.69 101.13 11 A HIS 440 37.74 -113.64 11 A CYS 442 -101.56 -167.31 11 A LYS 459 -59.09 101.34 12 A MET 340 61.97 -167.87 12 A TYR 344 173.92 158.44 12 A GLN 352 31.36 62.54 12 A SER 370 -79.36 -168.79 12 A ALA 379 59.37 137.12 12 A TRP 415 53.40 -5.27 12 A VAL 418 -55.11 172.45 12 A ASP 432 -51.95 101.57 12 A HIS 440 36.39 -120.69 12 A CYS 442 -103.56 -165.37 12 A LYS 459 -59.20 102.01 13 A MET 340 64.37 -168.64 13 A TYR 344 174.67 158.61 13 A GLN 352 34.19 61.83 13 A SER 370 -74.92 -168.93 13 A ALA 379 63.14 143.93 13 A PRO 412 -65.87 89.03 13 A ILE 413 -84.18 -157.49 13 A TRP 415 -78.43 32.05 13 A ASP 432 -51.68 102.72 13 A HIS 440 37.80 -125.75 13 A CYS 442 -104.49 -165.57 13 A LYS 459 -57.91 103.43 14 A HIS 339 39.42 94.88 14 A MET 340 67.43 -164.71 14 A TYR 344 173.91 159.27 14 A GLN 352 33.06 61.62 14 A SER 370 -75.62 -168.61 14 A ALA 379 59.59 140.11 14 A PRO 412 -66.87 75.76 14 A TRP 415 83.44 -52.47 14 A VAL 418 -57.06 173.16 14 A ASP 432 -51.78 101.46 14 A HIS 440 29.52 -106.51 14 A CYS 442 -107.22 -167.27 14 A PRO 447 -58.27 -8.25 14 A LYS 459 -59.01 101.68 15 A HIS 339 65.20 -177.59 15 A MET 340 -57.80 -159.64 15 A TYR 344 174.60 157.47 15 A GLN 352 32.53 61.62 15 A SER 370 -75.11 -168.92 15 A ALA 379 60.20 142.88 15 A ASN 386 -170.20 126.88 15 A PRO 412 -68.03 70.36 15 A TRP 415 179.73 -60.76 15 A VAL 418 -58.27 173.48 15 A ASP 432 -51.51 101.19 15 A HIS 440 37.41 -124.27 15 A CYS 442 -104.62 -165.86 15 A LYS 459 -58.97 102.41 16 A MET 340 62.45 -169.02 16 A TYR 344 174.52 158.24 16 A GLN 352 31.38 62.44 16 A SER 370 -78.80 -168.00 16 A ALA 379 60.50 140.92 16 A ASP 398 -59.93 -2.42 16 A PRO 412 -63.41 84.45 16 A TRP 415 55.32 -6.30 16 A VAL 418 -55.11 171.97 16 A ASP 432 -52.82 101.93 16 A HIS 440 35.92 -118.47 16 A CYS 442 -103.78 -167.06 17 A MET 340 62.16 -163.28 17 A TYR 344 174.42 158.32 17 A GLN 352 32.83 60.80 17 A ALA 379 57.93 136.69 17 A ASP 398 -58.09 -2.61 17 A PRO 412 -67.59 71.40 17 A TRP 415 50.72 0.68 17 A VAL 418 -59.13 172.79 17 A ASP 432 -52.59 101.95 17 A HIS 440 37.09 -130.86 17 A LYS 459 -58.80 102.07 18 A MET 340 47.95 -148.94 18 A TYR 344 173.65 159.18 18 A GLN 352 34.75 61.59 18 A ALA 379 59.85 136.31 18 A ASN 386 -170.05 132.65 18 A PRO 412 -65.29 84.49 18 A TRP 415 50.97 -4.17 18 A VAL 418 -55.46 172.63 18 A ASP 432 -50.87 102.82 18 A HIS 440 39.42 -132.24 18 A CYS 442 -101.84 -166.08 18 A LYS 459 -55.38 101.47 19 A MET 340 61.25 -164.06 19 A TYR 344 174.11 159.00 19 A GLN 352 34.09 61.76 19 A SER 370 -76.23 -167.67 19 A ALA 379 59.41 134.24 19 A ASP 398 -58.12 -8.43 19 A PRO 412 -67.87 78.13 19 A TRP 415 59.03 2.39 19 A THR 416 -130.71 -30.69 19 A ASP 432 -52.75 100.89 19 A HIS 440 35.67 -133.21 19 A LYS 459 -57.82 101.51 20 A MET 340 62.91 -166.15 20 A TYR 344 174.32 158.87 20 A GLN 352 34.29 61.70 20 A ASP 359 74.85 37.69 20 A SER 370 -76.87 -169.21 20 A ALA 379 61.21 137.98 20 A ASP 398 -56.89 -2.07 20 A PRO 412 -59.20 89.79 20 A ILE 413 -91.60 -135.62 20 A VAL 418 -59.74 171.06 20 A ASP 432 -51.90 101.82 20 A HIS 440 37.33 -126.85 20 A CYS 442 -102.11 -166.05 20 A LYS 459 -55.57 103.01 NMR structure of the catalytic domain from E. faecium L,D- transpeptidase acylated by ertapenem 1 N N 2 N N A LEU 433 A LEU 96 HELX_P A GLY 438 A GLY 101 1 1 6 A PRO 447 A PRO 110 HELX_P A VAL 457 A VAL 120 1 2 11 covale 1.748 none A 1RG 130 B CAA 1RG 1_555 A CYS 442 A SG CYS 105 1_555 TRANSFERASE TRANSFERASE, TRANSPEPTIDATION, PEPTIDOGLYCAN BIOSYNTHESIS, ANTIBIOTIC RESISTANCE Q3Y185_ENTFC UNP 1 Q3Y185 341 466 3ZGP 341 466 Q3Y185 A 1 4 129 1 expression tag GLY 338 3ZGP A Q3Y185 UNP 1 1 expression tag HIS 339 3ZGP A Q3Y185 UNP 2 1 expression tag MET 340 3ZGP A Q3Y185 UNP 3 3 2 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A THR 343 A THR 6 A ASP 348 A ASP 11 A GLN 352 A GLN 15 A LYS 358 A LYS 21 A LYS 361 A LYS 24 A ASP 367 A ASP 30 A VAL 381 A VAL 44 A VAL 384 A VAL 47 A THR 461 A THR 124 A VAL 465 A VAL 128 A LYS 387 A LYS 50 A GLU 389 A GLU 52 A TYR 409 A TYR 72 A PRO 412 A PRO 75 A ILE 420 A ILE 83 A ASP 422 A ASP 85 A ILE 443 A ILE 106 A THR 445 A THR 108 A THR 392 A THR 55 A THR 396 A THR 59 A PRO 402 A PRO 65 A PRO 406 A PRO 69 BINDING SITE FOR RESIDUE 1RG A 130 A 1RG 130 Software 12 A LEU 393 A LEU 56 12 1_555 A THR 396 A THR 59 12 1_555 A ASN 397 A ASN 60 12 1_555 A ASP 398 A ASP 61 12 1_555 A GLY 400 A GLY 63 12 1_555 A TYR 403 A TYR 66 12 1_555 A TRP 410 A TRP 73 12 1_555 A GLY 417 A GLY 80 12 1_555 A VAL 418 A VAL 81 12 1_555 A HIS 440 A HIS 103 12 1_555 A GLY 441 A GLY 104 12 1_555 A CYS 442 A CYS 105 12 1_555 1 P 1