0.028702
0.000000
0.000000
0.000000
0.026697
0.000000
0.000000
0.000000
0.009480
0.00000
0.00000
0.00000
Juergens, M.C.
Voros, J.
Rautureau, G.
Shepherd, D.
Pye, V.E.
Muldoon, J.
Johnson, C.M.
Ashcroft, A.
Freund, S.M.V.
Ferguson, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
34.841
37.457
105.484
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
Y
163
N
N
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
S
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
N
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
R
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
N
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
N
376
N
O
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
Y
155
N
sing
Y
156
N
doub
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
Y
262
N
doub
Y
263
N
sing
Y
264
N
sing
N
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
doub
N
269
N
sing
Y
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
Y
336
N
sing
Y
337
N
sing
N
338
N
sing
Y
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
US
Nat.Chem.Biol.
1552-4450
9
540
10.1038/NCHEMBIO.1294
23851574
The Hepatitis B Virus Pres1 Domain Hijacks Host Trafficking Proteins by Motif Mimicry.
2013
10.2210/pdb3zhf/pdb
pdb_00003zhf
CHAIN B LOW AFFINITY MEANS LOW CONFIDENCE IN MODEL. RESIDUES PHE B6 AND TRP B4 WERE REMODELLED MORE CONFIDENTLY THAN OTHER RESIDUES IN CHAIN B.
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
PIXEL
2012-11-20
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1.2395
1.0
P14 (MX2)
PETRA III, EMBL c/o DESY
1.2395
SYNCHROTRON
PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
13762.746
AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2
EAR DOMAIN, RESIDUES 665-785
1
man
polymer
AMIDATED C-TERMINUS, CARBOXYLATED N-TERMINUS
930.940
LARGE ENVELOPE PROTEIN
PRES1 DOMAIN, RESIDUES 85-91
1
syn
polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
84
nat
water
GAMMA2-ADAPTIN, G2AD
HBV L PROTEIN
no
no
GGSAPIPDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPI
TQLFRILNPNKAPLRLKLRLTYDHFHQSVQEIFEVNNLPVESWQ
GGSAPIPDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPI
TQLFRILNPNKAPLRLKLRLTYDHFHQSVQEIFEVNNLPVESWQ
A
polypeptide(L)
no
yes
(ACE)NPDWDFN(NH2)
XNPDWDFNX
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
C41
MODIFIED PRSETA
PLASMID
1
2.51
51.07
NONE
6.5
100 MM MES/IMIDAZOLE PH 6.5, 0.02 M 1,6-HEXANEDIOL, 0.02 M 1-BUTANOL, 0.02 M (RS)-1, 2-PROPANEDIOL, 0.02 M 2-PROPANOL, 0.02 M 1,4-BUTANEDIOL, 0.02 M 1,3-PROPANEDIOL, 10% (W/V) PEG 20000 AND 24% (V/V) PEG400 (USING A 2:1 RATIO OF PROTEIN TO MOTHER LIQUOR), PEPTIDE WAS AT ABOUT 50 FOLD MOLAR EXCESS
diffrn_source
entity_src_gen
pdbx_database_status
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Database references
Source and taxonomy
Database references
Source and taxonomy
Database references
Data collection
Data collection
Source and taxonomy
Data collection
Database references
Derived calculations
Other
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-07-10
1
1
2013-07-17
1
2
2013-07-24
1
3
2013-07-31
1
4
2013-08-28
1
5
2015-07-01
1
6
2018-03-07
1
7
2019-10-23
1
8
2023-12-20
_diffrn_source.pdbx_synchrotron_site
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_strain
_pdbx_database_status.status_code_sf
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2012-12-21
REL
REL
PEG
DI(HYDROXYETHYL)ETHER
EDO
1,2-ETHANEDIOL
HOH
water
10407
HEPATITIS B VIRUS
sample
AMINO GROUP (NH2): PEPTIDE C TERMINUS IS AMIDATED
GGS IS A CLONING ARTEFACT AT THE PROTEIN N-TERMINUS
4BCX
PDB ENTRY 4BCX
PDB
experimental model
PEG
1786
3
PEG
PEG
1786
A
EDO
1787
4
EDO
EDO
1787
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
n
1
662
A
GLY
663
n
2
GLY
663
A
SER
664
n
3
SER
664
A
ALA
665
n
4
ALA
665
A
PRO
666
n
5
PRO
666
A
ILE
667
n
6
ILE
667
A
PRO
668
n
7
PRO
668
A
ASP
669
n
8
ASP
669
A
LEU
670
n
9
LEU
670
A
LYS
671
n
10
LYS
671
A
VAL
672
n
11
VAL
672
A
PHE
673
n
12
PHE
673
A
GLU
674
n
13
GLU
674
A
ARG
675
n
14
ARG
675
A
GLU
676
n
15
GLU
676
A
GLY
677
n
16
GLY
677
A
VAL
678
n
17
VAL
678
A
GLN
679
n
18
GLN
679
A
LEU
680
n
19
LEU
680
A
ASN
681
n
20
ASN
681
A
LEU
682
n
21
LEU
682
A
SER
683
n
22
SER
683
A
PHE
684
n
23
PHE
684
A
ILE
685
n
24
ILE
685
A
ARG
686
n
25
ARG
686
A
PRO
687
n
26
PRO
687
A
PRO
688
n
27
PRO
688
A
GLU
689
n
28
GLU
689
A
ASN
690
n
29
ASN
690
A
PRO
691
n
30
PRO
691
A
ALA
692
n
31
ALA
692
A
LEU
693
n
32
LEU
693
A
LEU
694
n
33
LEU
694
A
LEU
695
n
34
LEU
695
A
ILE
696
n
35
ILE
696
A
THR
697
n
36
THR
697
A
ILE
698
n
37
ILE
698
A
THR
699
n
38
THR
699
A
ALA
700
n
39
ALA
700
A
THR
701
n
40
THR
701
A
ASN
702
n
41
ASN
702
A
PHE
703
n
42
PHE
703
A
SER
704
n
43
SER
704
A
GLU
705
n
44
GLU
705
A
GLY
706
n
45
GLY
706
A
ASP
707
n
46
ASP
707
A
VAL
708
n
47
VAL
708
A
THR
709
n
48
THR
709
A
HIS
710
n
49
HIS
710
A
PHE
711
n
50
PHE
711
A
ILE
712
n
51
ILE
712
A
CYS
713
n
52
CYS
713
A
GLN
714
n
53
GLN
714
A
ALA
715
n
54
ALA
715
A
ALA
716
n
55
ALA
716
A
VAL
717
n
56
VAL
717
A
PRO
718
n
57
PRO
718
A
LYS
719
n
58
LYS
719
A
SER
720
n
59
SER
720
A
LEU
721
n
60
LEU
721
A
GLN
722
n
61
GLN
722
A
LEU
723
n
62
LEU
723
A
GLN
724
n
63
GLN
724
A
LEU
725
n
64
LEU
725
A
GLN
726
n
65
GLN
726
A
ALA
727
n
66
ALA
727
A
PRO
728
n
67
PRO
728
A
SER
729
n
68
SER
729
A
GLY
730
n
69
GLY
730
A
ASN
731
n
70
ASN
731
A
THR
732
n
71
THR
732
A
VAL
733
n
72
VAL
733
A
PRO
734
n
73
PRO
734
A
ALA
735
n
74
ALA
735
A
ARG
736
n
75
ARG
736
A
GLY
737
n
76
GLY
737
A
GLY
738
n
77
GLY
738
A
LEU
739
n
78
LEU
739
A
PRO
740
n
79
PRO
740
A
ILE
741
n
80
ILE
741
A
THR
742
n
81
THR
742
A
GLN
743
n
82
GLN
743
A
LEU
744
n
83
LEU
744
A
PHE
745
n
84
PHE
745
A
ARG
746
n
85
ARG
746
A
ILE
747
n
86
ILE
747
A
LEU
748
n
87
LEU
748
A
ASN
749
n
88
ASN
749
A
PRO
750
n
89
PRO
750
A
ASN
751
n
90
ASN
751
A
LYS
752
n
91
LYS
752
A
ALA
753
n
92
ALA
753
A
PRO
754
n
93
PRO
754
A
LEU
755
n
94
LEU
755
A
ARG
756
n
95
ARG
756
A
LEU
757
n
96
LEU
757
A
LYS
758
n
97
LYS
758
A
LEU
759
n
98
LEU
759
A
ARG
760
n
99
ARG
760
A
LEU
761
n
100
LEU
761
A
THR
762
n
101
THR
762
A
TYR
763
n
102
TYR
763
A
ASP
764
n
103
ASP
764
A
HIS
765
n
104
HIS
765
A
PHE
766
n
105
PHE
766
A
HIS
767
n
106
HIS
767
A
GLN
768
n
107
GLN
768
A
SER
769
n
108
SER
769
A
VAL
770
n
109
VAL
770
A
GLN
771
n
110
GLN
771
A
GLU
772
n
111
GLU
772
A
ILE
773
n
112
ILE
773
A
PHE
774
n
113
PHE
774
A
GLU
775
n
114
GLU
775
A
VAL
776
n
115
VAL
776
A
ASN
777
n
116
ASN
777
A
ASN
778
n
117
ASN
778
A
LEU
779
n
118
LEU
779
A
PRO
780
n
119
PRO
780
A
VAL
781
n
120
VAL
781
A
GLU
782
n
121
GLU
782
A
SER
783
n
122
SER
783
A
TRP
784
n
123
TRP
784
A
GLN
785
n
124
GLN
785
A
n
1
0
B
n
2
1
B
PRO
2
n
3
PRO
2
B
ASP
3
n
4
ASP
3
B
TRP
4
n
5
TRP
4
B
ASP
5
n
6
ASP
5
B
PHE
6
n
7
PHE
6
B
ASN
7
n
8
ASN
7
B
NH2
8
n
9
NH2
8
B
author_and_software_defined_assembly
PISA
2
dimeric
1040
-8.8
8500
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
675
A
N
ARG
14
A
O
VAL
678
A
O
VAL
17
A
N
ILE
685
A
N
ILE
24
A
O
LEU
695
A
O
LEU
34
A
N
ALA
700
A
N
ALA
39
A
O
ILE
741
A
O
ILE
80
A
N
LEU
748
A
N
LEU
87
A
O
GLN
722
A
O
GLN
61
A
N
ALA
716
A
N
ALA
55
A
O
LYS
758
A
O
LYS
97
A
N
HIS
765
A
N
HIS
104
A
O
GLN
768
A
O
GLN
107
1
A
GLY
662
A
GLY
1
1
Y
1
B
ACE
0
B
ACE
1
1
Y
1
B
ASN
1
B
ASN
2
1
Y
1
A
A
NH1
O
ARG
HOH
746
2068
2.12
B
1
A
TRP
784
-143.31
-21.14
1
B
ASP
3
-49.87
158.89
0.2257
0.1896
0.1913
1.700
35.298
779
15598
5.0
98.35
0.18
1
1.34
MOLECULAR REPLACEMENT
23.82
0.90
1.11
PDB ENTRY 4BCX
ML
FLAT BULK SOLVENT MODEL
1.700
35.298
84
1121
11
0
1026
0.006
1115
1.081
1527
14.208
429
0.072
170
0.005
204
0.2697
0.2398
1.8065
123
2426
99.00
0.2502
0.1918
1.9460
133
2418
98.00
0.2186
0.1739
2.1418
135
2422
99.00
0.2612
0.1780
2.4517
133
2445
98.00
0.2240
0.1944
3.0886
133
2495
99.00
0.2061
0.1886
35.3052
122
2613
98.00
20.34
1.70
37.46
3ZHF
15669
2.7
0.05
1
17.30
4.1
98.8
0.42
1.70
1.79
2.70
1
4.2
99.1
refinement
PHENIX
(PHENIX.REFINE: 1.8_1069)
data reduction
XDS
data scaling
SCALA
phasing
DIMPLE
gamma 2 adaptin EAR domain crystal structure with preS1 site1 peptide NPDWDFN
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
PRO
780
A
PRO
119
HELX_P
A
TRP
784
A
TRP
123
5
1
5
covale
1.324
both
B
ASN
7
B
C
ASN
8
1_555
B
NH2
8
B
N
NH2
9
1_555
PROTEIN TRANSPORT/VIRAL PROTEIN
PROTEIN TRANSPORT-VIRAL PROTEIN COMPLEX, GAE
AP1G2_HUMAN
UNP
1
O75843
Q67953_HBV
UNP
2
Q67953
665
785
3ZHF
665
785
O75843
A
1
4
124
85
91
3ZHF
1
7
Q67953
B
2
2
8
1
expression tag
GLY
662
3ZHF
A
O75843
UNP
1
1
expression tag
GLY
663
3ZHF
A
O75843
UNP
2
1
expression tag
SER
664
3ZHF
A
O75843
UNP
3
2
acetylation
ACE
0
3ZHF
B
Q67953
UNP
1
2
amidation
NH2
8
3ZHF
B
Q67953
UNP
9
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
670
A
LEU
9
A
ARG
675
A
ARG
14
A
VAL
678
A
VAL
17
A
ILE
685
A
ILE
24
A
LEU
693
A
LEU
32
A
ASN
702
A
ASN
41
A
ILE
741
A
ILE
80
A
LEU
748
A
LEU
87
A
GLN
722
A
GLN
61
A
LEU
725
A
LEU
64
A
VAL
708
A
VAL
47
A
ALA
716
A
ALA
55
A
LYS
758
A
LYS
97
A
HIS
765
A
HIS
104
A
GLN
768
A
GLN
107
A
GLU
775
A
GLU
114
BINDING SITE FOR RESIDUE PEG A 1786
A
PEG
1786
Software
1
BINDING SITE FOR RESIDUE EDO A 1787
A
EDO
1787
Software
5
A
LYS
758
A
LYS
97
1
1_555
A
GLN
714
A
GLN
53
5
1_555
A
ALA
715
A
ALA
54
5
1_555
A
LEU
725
A
LEU
64
5
1_555
A
HOH
2047
E
HOH
5
1_555
B
ASN
7
B
ASN
8
5
1_555
19
P 21 21 21