0.015337
0.000000
0.000000
0.000000
0.015337
0.000000
0.000000
0.000000
0.008532
0.00000
0.00000
0.00000
Czabotar, P.E.
Lessene, G.L.
Smith, B.J.
Colman, P.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
65.200
65.200
117.210
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C31 H30 N4 O4 S2
586.724
N-(3-(5-(1-(2-(benzo[d]thiazol-2-yl)hydrazono)ethyl)furan-2-yl)phenylsulfonyl)-6-phenylhexanamide
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
Y
137
N
C
Y
138
N
C
Y
139
N
C
Y
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
S
N
146
N
N
N
147
N
N
N
148
N
C
N
149
N
C
Y
150
N
C
Y
151
N
C
Y
152
N
C
Y
153
N
C
Y
154
N
O
Y
155
N
C
Y
156
N
C
Y
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
N
161
N
S
N
162
N
O
N
163
N
O
N
164
N
N
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
C
Y
175
N
C
Y
176
N
C
Y
177
N
C
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
Y
213
N
C
Y
214
N
N
Y
215
N
C
Y
216
N
C
Y
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
S
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
N
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
S
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
R
C
N
380
N
O
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
N
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
N
430
N
O
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
C
N
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
Y
129
N
sing
Y
130
N
doub
Y
131
N
doub
Y
132
N
sing
Y
133
N
doub
Y
134
N
sing
Y
135
N
sing
Y
136
N
sing
Y
137
N
doub
Y
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
E
doub
N
142
N
sing
N
143
N
sing
Y
144
N
doub
Y
145
N
sing
Y
146
N
sing
Y
147
N
doub
Y
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
doub
Y
152
N
doub
Y
153
N
sing
Y
154
N
doub
Y
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
Y
169
N
doub
Y
170
N
doub
Y
171
N
sing
Y
172
N
doub
Y
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
Y
215
N
sing
Y
216
N
doub
Y
217
N
doub
N
218
N
sing
Y
219
N
sing
N
220
N
sing
Y
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
US
Nat.Chem.Biol.
1552-4450
9
390
10.1038/NCHEMBIO.1246
23603658
Structure-Guided Design of a Selective Bcl-Xl Inhibitor
2013
10.2210/pdb3zk6/pdb
pdb_00003zk6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
2006-06-20
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.96426
1.0
BL-6A
Photon Factory
0.96426
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
DELETION MUTATION PERFORMED. TRUNCATION REMOVES RESIDUES 41-80, AND 210-233
20771.055
BCL-2-LIKE PROTEIN 1
RESIDUES 1-40 AND 81-209
2
man
polymer
586.724
N-(3-(5-(1-(2-(benzo[d]thiazol-2-yl)hydrazono)ethyl)furan-2-yl)phenylsulfonyl)-6-phenylhexanamide
2
syn
non-polymer
18.015
water
54
nat
water
BCL2-L-1, APOPTOSIS REGULATOR BCL-X, BCL-XL
no
no
MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITP
GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG
NNAAAESRKGQERLEHHHHHH
MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITP
GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG
NNAAAESRKGQERLEHHHHHH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
PGEX-6P3
PLASMID.
1
3
59.96
NONE
2.2 M (NH4)2 SO4, 0.1 M BIS TRIS, PH 5.5
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-04-24
1
1
2013-05-08
1
2
2013-06-05
1
3
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 3).
CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 6).
CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (WEHI-539).
PDBE
Y
PDBE
2013-01-22
REL
REL
H1I
N-(3-(5-(1-(2-(benzo[d]thiazol-2-yl)hydrazono)ethyl)furan-2-yl)phenylsulfonyl)-6-phenylhexanamide
HOH
water
RESIDUES 41 TO 80 REMOVED, LAST 24 RESIDUES TRUNCATED
1PQ1
PDB ENTRY 1PQ1 CHAIN A.
PDB
experimental model
H1I
1198
2
H1I
H1I
1198
A
H1I
1198
2
H1I
H1I
1198
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
1
A
SER
2
n
6
SER
2
A
GLN
3
n
7
GLN
3
A
SER
4
n
8
SER
4
A
ASN
5
n
9
ASN
5
A
ARG
6
n
10
ARG
6
A
GLU
7
n
11
GLU
7
A
LEU
8
n
12
LEU
8
A
VAL
9
n
13
VAL
9
A
VAL
10
n
14
VAL
10
A
ASP
11
n
15
ASP
11
A
PHE
12
n
16
PHE
12
A
LEU
13
n
17
LEU
13
A
SER
14
n
18
SER
14
A
TYR
15
n
19
TYR
15
A
LYS
16
n
20
LYS
16
A
LEU
17
n
21
LEU
17
A
SER
18
n
22
SER
18
A
GLN
19
n
23
GLN
19
A
LYS
20
n
24
LYS
20
A
GLY
21
n
25
GLY
21
A
TYR
22
n
26
TYR
22
A
SER
23
n
27
SER
23
A
TRP
24
n
28
TRP
24
A
SER
25
n
29
SER
25
A
GLN
26
n
30
GLN
26
A
PHE
27
n
31
PHE
27
A
SER
28
n
32
SER
28
A
n
33
29
A
n
34
30
A
n
35
31
A
n
36
32
A
n
37
33
A
n
38
34
A
n
39
35
A
n
40
36
A
n
41
37
A
n
42
38
A
n
43
39
A
n
44
40
A
ILE
81
n
45
ILE
81
A
PRO
82
n
46
PRO
82
A
MET
83
n
47
MET
83
A
ALA
84
n
48
ALA
84
A
ALA
85
n
49
ALA
85
A
VAL
86
n
50
VAL
86
A
LYS
87
n
51
LYS
87
A
GLN
88
n
52
GLN
88
A
ALA
89
n
53
ALA
89
A
LEU
90
n
54
LEU
90
A
ARG
91
n
55
ARG
91
A
GLU
92
n
56
GLU
92
A
ALA
93
n
57
ALA
93
A
GLY
94
n
58
GLY
94
A
ASP
95
n
59
ASP
95
A
GLU
96
n
60
GLU
96
A
PHE
97
n
61
PHE
97
A
GLU
98
n
62
GLU
98
A
LEU
99
n
63
LEU
99
A
ARG
100
n
64
ARG
100
A
TYR
101
n
65
TYR
101
A
ARG
102
n
66
ARG
102
A
ARG
103
n
67
ARG
103
A
ALA
104
n
68
ALA
104
A
PHE
105
n
69
PHE
105
A
SER
106
n
70
SER
106
A
ASP
107
n
71
ASP
107
A
LEU
108
n
72
LEU
108
A
THR
109
n
73
THR
109
A
SER
110
n
74
SER
110
A
GLN
111
n
75
GLN
111
A
LEU
112
n
76
LEU
112
A
HIS
113
n
77
HIS
113
A
ILE
114
n
78
ILE
114
A
THR
115
n
79
THR
115
A
PRO
116
n
80
PRO
116
A
GLY
117
n
81
GLY
117
A
THR
118
n
82
THR
118
A
ALA
119
n
83
ALA
119
A
TYR
120
n
84
TYR
120
A
GLN
121
n
85
GLN
121
A
SER
122
n
86
SER
122
A
PHE
123
n
87
PHE
123
A
GLU
124
n
88
GLU
124
A
GLN
125
n
89
GLN
125
A
VAL
126
n
90
VAL
126
A
VAL
127
n
91
VAL
127
A
ASN
128
n
92
ASN
128
A
GLU
129
n
93
GLU
129
A
LEU
130
n
94
LEU
130
A
PHE
131
n
95
PHE
131
A
ARG
132
n
96
ARG
132
A
ASP
133
n
97
ASP
133
A
GLY
134
n
98
GLY
134
A
VAL
135
n
99
VAL
135
A
ASN
136
n
100
ASN
136
A
TRP
137
n
101
TRP
137
A
GLY
138
n
102
GLY
138
A
ARG
139
n
103
ARG
139
A
ILE
140
n
104
ILE
140
A
VAL
141
n
105
VAL
141
A
ALA
142
n
106
ALA
142
A
PHE
143
n
107
PHE
143
A
PHE
144
n
108
PHE
144
A
SER
145
n
109
SER
145
A
PHE
146
n
110
PHE
146
A
GLY
147
n
111
GLY
147
A
GLY
148
n
112
GLY
148
A
ALA
149
n
113
ALA
149
A
LEU
150
n
114
LEU
150
A
CYS
151
n
115
CYS
151
A
VAL
152
n
116
VAL
152
A
GLU
153
n
117
GLU
153
A
SER
154
n
118
SER
154
A
VAL
155
n
119
VAL
155
A
ASP
156
n
120
ASP
156
A
LYS
157
n
121
LYS
157
A
GLU
158
n
122
GLU
158
A
MET
159
n
123
MET
159
A
GLN
160
n
124
GLN
160
A
VAL
161
n
125
VAL
161
A
LEU
162
n
126
LEU
162
A
VAL
163
n
127
VAL
163
A
SER
164
n
128
SER
164
A
ARG
165
n
129
ARG
165
A
ILE
166
n
130
ILE
166
A
ALA
167
n
131
ALA
167
A
ALA
168
n
132
ALA
168
A
TRP
169
n
133
TRP
169
A
MET
170
n
134
MET
170
A
ALA
171
n
135
ALA
171
A
THR
172
n
136
THR
172
A
TYR
173
n
137
TYR
173
A
LEU
174
n
138
LEU
174
A
ASN
175
n
139
ASN
175
A
ASP
176
n
140
ASP
176
A
HIS
177
n
141
HIS
177
A
LEU
178
n
142
LEU
178
A
GLU
179
n
143
GLU
179
A
PRO
180
n
144
PRO
180
A
TRP
181
n
145
TRP
181
A
ILE
182
n
146
ILE
182
A
GLN
183
n
147
GLN
183
A
GLU
184
n
148
GLU
184
A
ASN
185
n
149
ASN
185
A
GLY
186
n
150
GLY
186
A
GLY
187
n
151
GLY
187
A
TRP
188
n
152
TRP
188
A
ASP
189
n
153
ASP
189
A
THR
190
n
154
THR
190
A
PHE
191
n
155
PHE
191
A
VAL
192
n
156
VAL
192
A
GLU
193
n
157
GLU
193
A
LEU
194
n
158
LEU
194
A
TYR
195
n
159
TYR
195
A
GLY
196
n
160
GLY
196
A
ASN
197
n
161
ASN
197
A
n
162
198
A
n
163
199
A
n
164
200
A
n
165
201
A
n
166
202
A
n
167
203
A
n
168
204
A
n
169
205
A
n
170
206
A
n
171
207
A
n
172
208
A
n
173
209
A
n
174
210
A
n
175
211
A
n
176
212
A
n
177
213
A
n
178
214
A
n
179
215
A
n
180
216
A
n
181
217
A
n
1
-3
B
n
2
-2
B
n
3
-1
B
n
4
0
B
n
5
1
B
SER
2
n
6
SER
2
B
GLN
3
n
7
GLN
3
B
SER
4
n
8
SER
4
B
ASN
5
n
9
ASN
5
B
ARG
6
n
10
ARG
6
B
GLU
7
n
11
GLU
7
B
LEU
8
n
12
LEU
8
B
VAL
9
n
13
VAL
9
B
VAL
10
n
14
VAL
10
B
ASP
11
n
15
ASP
11
B
PHE
12
n
16
PHE
12
B
LEU
13
n
17
LEU
13
B
SER
14
n
18
SER
14
B
TYR
15
n
19
TYR
15
B
LYS
16
n
20
LYS
16
B
LEU
17
n
21
LEU
17
B
SER
18
n
22
SER
18
B
GLN
19
n
23
GLN
19
B
LYS
20
n
24
LYS
20
B
GLY
21
n
25
GLY
21
B
TYR
22
n
26
TYR
22
B
SER
23
n
27
SER
23
B
TRP
24
n
28
TRP
24
B
SER
25
n
29
SER
25
B
GLN
26
n
30
GLN
26
B
PHE
27
n
31
PHE
27
B
SER
28
n
32
SER
28
B
n
33
29
B
n
34
30
B
n
35
31
B
n
36
32
B
n
37
33
B
n
38
34
B
n
39
35
B
n
40
36
B
n
41
37
B
n
42
38
B
n
43
39
B
n
44
40
B
ILE
81
n
45
ILE
81
B
PRO
82
n
46
PRO
82
B
MET
83
n
47
MET
83
B
ALA
84
n
48
ALA
84
B
ALA
85
n
49
ALA
85
B
VAL
86
n
50
VAL
86
B
LYS
87
n
51
LYS
87
B
GLN
88
n
52
GLN
88
B
ALA
89
n
53
ALA
89
B
LEU
90
n
54
LEU
90
B
ARG
91
n
55
ARG
91
B
GLU
92
n
56
GLU
92
B
ALA
93
n
57
ALA
93
B
GLY
94
n
58
GLY
94
B
ASP
95
n
59
ASP
95
B
GLU
96
n
60
GLU
96
B
PHE
97
n
61
PHE
97
B
GLU
98
n
62
GLU
98
B
LEU
99
n
63
LEU
99
B
ARG
100
n
64
ARG
100
B
TYR
101
n
65
TYR
101
B
ARG
102
n
66
ARG
102
B
ARG
103
n
67
ARG
103
B
ALA
104
n
68
ALA
104
B
PHE
105
n
69
PHE
105
B
SER
106
n
70
SER
106
B
ASP
107
n
71
ASP
107
B
LEU
108
n
72
LEU
108
B
THR
109
n
73
THR
109
B
SER
110
n
74
SER
110
B
GLN
111
n
75
GLN
111
B
LEU
112
n
76
LEU
112
B
HIS
113
n
77
HIS
113
B
ILE
114
n
78
ILE
114
B
THR
115
n
79
THR
115
B
PRO
116
n
80
PRO
116
B
GLY
117
n
81
GLY
117
B
THR
118
n
82
THR
118
B
ALA
119
n
83
ALA
119
B
TYR
120
n
84
TYR
120
B
GLN
121
n
85
GLN
121
B
SER
122
n
86
SER
122
B
PHE
123
n
87
PHE
123
B
GLU
124
n
88
GLU
124
B
GLN
125
n
89
GLN
125
B
VAL
126
n
90
VAL
126
B
VAL
127
n
91
VAL
127
B
ASN
128
n
92
ASN
128
B
GLU
129
n
93
GLU
129
B
LEU
130
n
94
LEU
130
B
PHE
131
n
95
PHE
131
B
ARG
132
n
96
ARG
132
B
ASP
133
n
97
ASP
133
B
GLY
134
n
98
GLY
134
B
VAL
135
n
99
VAL
135
B
ASN
136
n
100
ASN
136
B
TRP
137
n
101
TRP
137
B
GLY
138
n
102
GLY
138
B
ARG
139
n
103
ARG
139
B
ILE
140
n
104
ILE
140
B
VAL
141
n
105
VAL
141
B
ALA
142
n
106
ALA
142
B
PHE
143
n
107
PHE
143
B
PHE
144
n
108
PHE
144
B
SER
145
n
109
SER
145
B
PHE
146
n
110
PHE
146
B
GLY
147
n
111
GLY
147
B
GLY
148
n
112
GLY
148
B
ALA
149
n
113
ALA
149
B
LEU
150
n
114
LEU
150
B
CYS
151
n
115
CYS
151
B
VAL
152
n
116
VAL
152
B
GLU
153
n
117
GLU
153
B
SER
154
n
118
SER
154
B
VAL
155
n
119
VAL
155
B
ASP
156
n
120
ASP
156
B
LYS
157
n
121
LYS
157
B
GLU
158
n
122
GLU
158
B
MET
159
n
123
MET
159
B
GLN
160
n
124
GLN
160
B
VAL
161
n
125
VAL
161
B
LEU
162
n
126
LEU
162
B
VAL
163
n
127
VAL
163
B
SER
164
n
128
SER
164
B
ARG
165
n
129
ARG
165
B
ILE
166
n
130
ILE
166
B
ALA
167
n
131
ALA
167
B
ALA
168
n
132
ALA
168
B
TRP
169
n
133
TRP
169
B
MET
170
n
134
MET
170
B
ALA
171
n
135
ALA
171
B
THR
172
n
136
THR
172
B
TYR
173
n
137
TYR
173
B
LEU
174
n
138
LEU
174
B
ASN
175
n
139
ASN
175
B
ASP
176
n
140
ASP
176
B
HIS
177
n
141
HIS
177
B
LEU
178
n
142
LEU
178
B
GLU
179
n
143
GLU
179
B
PRO
180
n
144
PRO
180
B
TRP
181
n
145
TRP
181
B
ILE
182
n
146
ILE
182
B
GLN
183
n
147
GLN
183
B
GLU
184
n
148
GLU
184
B
ASN
185
n
149
ASN
185
B
GLY
186
n
150
GLY
186
B
GLY
187
n
151
GLY
187
B
TRP
188
n
152
TRP
188
B
ASP
189
n
153
ASP
189
B
THR
190
n
154
THR
190
B
PHE
191
n
155
PHE
191
B
VAL
192
n
156
VAL
192
B
GLU
193
n
157
GLU
193
B
LEU
194
n
158
LEU
194
B
TYR
195
n
159
TYR
195
B
GLY
196
n
160
GLY
196
B
ASN
197
n
161
ASN
197
B
n
162
198
B
n
163
199
B
n
164
200
B
n
165
201
B
n
166
202
B
n
167
203
B
n
168
204
B
n
169
205
B
n
170
206
B
n
171
207
B
n
172
208
B
n
173
209
B
n
174
210
B
n
175
211
B
n
176
212
B
n
177
213
B
n
178
214
B
n
179
215
B
n
180
216
B
n
181
217
B
6.6055
2.6955
-2.1526
6.4340
-0.1009
2.5457
-0.5071
0.5923
-0.9946
-0.4293
0.3562
-0.8729
-0.0959
0.2140
-0.0522
0.5925
0.0296
0.1164
0.5994
-0.1531
0.1961
refined
32.2023
37.2013
-9.7401
X-RAY DIFFRACTION
8.2892
0.9527
1.0328
6.9331
-0.5070
5.1399
0.0879
-0.1004
0.3257
0.4667
0.4960
-0.4632
-1.1828
0.5301
-0.5025
0.6747
-0.1447
-0.0306
0.7311
-0.0480
0.2839
refined
32.4324
49.3170
3.6748
X-RAY DIFFRACTION
4.4595
-0.1494
0.7074
3.9574
0.3271
2.8687
-0.3978
0.0329
0.1149
-0.1605
0.5902
-0.3463
-0.4164
0.3309
-0.2126
0.5070
-0.0609
0.0338
0.6937
-0.0228
0.2597
refined
36.8244
42.8651
-1.3703
X-RAY DIFFRACTION
1.8697
1.2705
1.1469
5.0156
3.1769
8.1433
0.0737
0.2735
0.0373
-0.2998
-0.0746
0.1005
0.2677
-0.0706
0.1318
0.5142
-0.0206
-0.0677
0.8260
0.0920
0.1785
refined
20.7975
32.2291
0.9068
X-RAY DIFFRACTION
3.5620
1.8706
0.2430
5.8873
3.1379
7.7006
0.2069
-0.4564
0.2345
-0.2689
-0.2486
0.3384
-0.5952
-0.2101
0.2433
0.6810
-0.0041
-0.0620
0.5479
-0.0042
0.2604
refined
4.5815
64.7406
10.0124
X-RAY DIFFRACTION
4.6370
1.4613
-0.0807
7.4730
-1.5308
6.9174
0.1317
0.2406
0.5346
-0.4734
0.1443
0.0715
-0.8805
0.6862
-0.3841
0.6893
0.2076
0.0845
0.5163
-0.0546
0.2887
refined
16.6888
65.0325
-3.4082
X-RAY DIFFRACTION
5.6801
1.0219
1.3958
5.8767
-0.2767
2.5532
-0.2287
0.2728
1.0006
-0.0748
0.0425
0.2406
-0.4782
0.0406
0.0491
0.7561
0.2038
0.0495
0.3693
0.0247
0.3350
refined
10.2350
69.3978
1.6526
X-RAY DIFFRACTION
9.5551
2.7939
-4.9605
2.8596
-2.5337
3.5778
-0.8250
-0.1499
-0.2267
0.3169
-0.1718
-0.0057
0.4515
-0.5274
0.5852
0.7499
0.1685
-0.1371
0.4428
-0.0896
0.3618
refined
-0.3787
53.3632
-0.6668
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ 2:100)
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 101:136)
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 137:177)
X-RAY DIFFRACTION
4
CHAIN A AND (RESSEQ 178:196)
X-RAY DIFFRACTION
5
CHAIN B AND (RESSEQ 2:100)
X-RAY DIFFRACTION
6
CHAIN B AND (RESSEQ 101:136)
X-RAY DIFFRACTION
7
CHAIN B AND (RESSEQ 137:177)
X-RAY DIFFRACTION
8
CHAIN B AND (RESSEQ 178:196)
1
0.490
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
-3
A
MET
1
1
Y
1
A
SER
-2
A
SER
2
1
Y
1
A
MET
-1
A
MET
3
1
Y
1
A
ALA
0
A
ALA
4
1
Y
1
A
MET
1
A
MET
5
1
Y
1
A
ASP
29
A
ASP
33
1
Y
1
A
VAL
30
A
VAL
34
1
Y
1
A
GLU
31
A
GLU
35
1
Y
1
A
GLU
32
A
GLU
36
1
Y
1
A
ASN
33
A
ASN
37
1
Y
1
A
ARG
34
A
ARG
38
1
Y
1
A
THR
35
A
THR
39
1
Y
1
A
GLU
36
A
GLU
40
1
Y
1
A
ALA
37
A
ALA
41
1
Y
1
A
PRO
38
A
PRO
42
1
Y
1
A
GLU
39
A
GLU
43
1
Y
1
A
GLY
40
A
GLY
44
1
Y
1
A
ASN
198
A
ASN
162
1
Y
1
A
ALA
199
A
ALA
163
1
Y
1
A
ALA
200
A
ALA
164
1
Y
1
A
ALA
201
A
ALA
165
1
Y
1
A
GLU
202
A
GLU
166
1
Y
1
A
SER
203
A
SER
167
1
Y
1
A
ARG
204
A
ARG
168
1
Y
1
A
LYS
205
A
LYS
169
1
Y
1
A
GLY
206
A
GLY
170
1
Y
1
A
GLN
207
A
GLN
171
1
Y
1
A
GLU
208
A
GLU
172
1
Y
1
A
ARG
209
A
ARG
173
1
Y
1
A
LEU
210
A
LEU
174
1
Y
1
A
GLU
211
A
GLU
175
1
Y
1
A
HIS
212
A
HIS
176
1
Y
1
A
HIS
213
A
HIS
177
1
Y
1
A
HIS
214
A
HIS
178
1
Y
1
A
HIS
215
A
HIS
179
1
Y
1
A
HIS
216
A
HIS
180
1
Y
1
A
HIS
217
A
HIS
181
1
Y
1
B
MET
-3
B
MET
1
1
Y
1
B
SER
-2
B
SER
2
1
Y
1
B
MET
-1
B
MET
3
1
Y
1
B
ALA
0
B
ALA
4
1
Y
1
B
MET
1
B
MET
5
1
Y
1
B
ASP
29
B
ASP
33
1
Y
1
B
VAL
30
B
VAL
34
1
Y
1
B
GLU
31
B
GLU
35
1
Y
1
B
GLU
32
B
GLU
36
1
Y
1
B
ASN
33
B
ASN
37
1
Y
1
B
ARG
34
B
ARG
38
1
Y
1
B
THR
35
B
THR
39
1
Y
1
B
GLU
36
B
GLU
40
1
Y
1
B
ALA
37
B
ALA
41
1
Y
1
B
PRO
38
B
PRO
42
1
Y
1
B
GLU
39
B
GLU
43
1
Y
1
B
GLY
40
B
GLY
44
1
Y
1
B
ASN
198
B
ASN
162
1
Y
1
B
ALA
199
B
ALA
163
1
Y
1
B
ALA
200
B
ALA
164
1
Y
1
B
ALA
201
B
ALA
165
1
Y
1
B
GLU
202
B
GLU
166
1
Y
1
B
SER
203
B
SER
167
1
Y
1
B
ARG
204
B
ARG
168
1
Y
1
B
LYS
205
B
LYS
169
1
Y
1
B
GLY
206
B
GLY
170
1
Y
1
B
GLN
207
B
GLN
171
1
Y
1
B
GLU
208
B
GLU
172
1
Y
1
B
ARG
209
B
ARG
173
1
Y
1
B
LEU
210
B
LEU
174
1
Y
1
B
GLU
211
B
GLU
175
1
Y
1
B
HIS
212
B
HIS
176
1
Y
1
B
HIS
213
B
HIS
177
1
Y
1
B
HIS
214
B
HIS
178
1
Y
1
B
HIS
215
B
HIS
179
1
Y
1
B
HIS
216
B
HIS
180
1
Y
1
B
HIS
217
B
HIS
181
1
Y
1
B
B
O
O
HOH
HOH
2018
2019
2.06
1
B
B
NE2
O
GLN
HOH
88
2006
2.15
1
A
A
OH
OD1
TYR
ASP
22
156
2.15
1
B
B
OH
OD1
TYR
ASP
22
156
2.15
1
B
B
O
O
HOH
HOH
2008
2010
2.15
1
B
B
O
O
HOH
HOH
2021
2022
2.17
1
8.71
1.40
123.60
132.31
A
A
A
CD
NE
CZ
ARG
ARG
ARG
132
132
132
N
1
6.07
0.50
120.30
126.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
132
132
132
N
1
-6.05
0.50
120.30
114.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
132
132
132
N
1
5.97
0.50
120.30
126.27
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
132
132
132
N
1
-6.29
0.50
120.30
114.01
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
132
132
132
N
1
A
GLN
111
-96.95
34.45
1
A
LEU
112
-167.97
81.11
1
A
HIS
113
-68.00
95.09
1
A
GLU
158
47.68
18.81
1
A
MET
159
-92.52
47.63
1
B
GLN
111
-95.97
34.07
1
B
LEU
112
-168.45
81.59
1
B
HIS
113
-68.44
94.85
1
B
GLU
158
47.04
18.55
1
B
MET
159
-92.39
47.95
0.2607
0.2214
0.2215
2.480
46.103
871
17274
5.0
99.42
1
2.00
MOLECULAR REPLACEMENT
27.30
0.90
1.11
PDB ENTRY 1PQ1 CHAIN A.
TWIN_LSQ_F
FLAT BULK SOLVENT MODEL
2.480
46.103
54
2470
82
0
2334
0.008
2482
1.312
3362
19.667
862
0.082
340
0.005
428
1
A
1
1167
X-RAY DIFFRACTION
POSITIONAL
2
B
1
1167
X-RAY DIFFRACTION
POSITIONAL
0.042
0.3492
0.2659
2.6361
141
2647
92.00
0.3198
0.2485
2.8395
144
2739
95.00
0.2505
0.2342
3.1249
146
2741
95.00
0.2797
0.2221
3.5764
144
2741
95.00
0.2348
0.2005
4.5032
144
2737
95.00
0.2464
0.2120
29.1603
147
2788
95.00
2.48
46.10
3ZK6
17277
-3.0
0.09
1
16.62
7.45
99.4
0.90
2.48
2.57
2.58
1
7.14
94.2
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
XDS
phasing
PHASER
Crystal structure of Bcl-xL in complex with inhibitor (Compound 2).
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
GLN
3
A
GLN
7
HELX_P
A
GLY
21
A
GLY
25
1
1
19
A
ILE
81
A
ILE
45
HELX_P
A
TYR
101
A
TYR
65
1
2
21
A
ARG
102
A
ARG
66
HELX_P
A
ALA
104
A
ALA
68
5
3
3
A
ALA
119
A
ALA
83
HELX_P
A
ASN
128
A
ASN
92
1
4
10
A
GLU
129
A
GLU
93
HELX_P
A
PHE
131
A
PHE
95
5
5
3
A
ASN
136
A
ASN
100
HELX_P
A
LYS
157
A
LYS
121
1
6
22
A
VAL
161
A
VAL
125
HELX_P
A
LEU
178
A
LEU
142
1
7
18
A
LEU
178
A
LEU
142
HELX_P
A
ASN
185
A
ASN
149
1
8
8
A
GLY
186
A
GLY
150
HELX_P
A
GLY
196
A
GLY
160
1
9
11
B
GLN
3
B
GLN
7
HELX_P
B
GLY
21
B
GLY
25
1
10
19
B
ILE
81
B
ILE
45
HELX_P
B
TYR
101
B
TYR
65
1
11
21
B
ARG
102
B
ARG
66
HELX_P
B
ALA
104
B
ALA
68
5
12
3
B
ALA
119
B
ALA
83
HELX_P
B
ASN
128
B
ASN
92
1
13
10
B
GLU
129
B
GLU
93
HELX_P
B
PHE
131
B
PHE
95
5
14
3
B
ASN
136
B
ASN
100
HELX_P
B
LYS
157
B
LYS
121
1
15
22
B
VAL
161
B
VAL
125
HELX_P
B
LEU
178
B
LEU
142
1
16
18
B
LEU
178
B
LEU
142
HELX_P
B
ASN
185
B
ASN
149
1
17
8
B
GLY
186
B
GLY
150
HELX_P
B
GLY
196
B
GLY
160
1
18
11
APOPTOSIS
APOPTOSIS, INHIBITOR, BCL-2 FAMILY
CHAIN A
CHAIN B
given
-0.001619
0.999994
0.003115
0.999999
0.001621
-0.000549
-0.000554
0.003115
-0.999995
-32.56200
32.52020
0.07304
B2CL1_HUMAN
UNP
1
Q07817
1
40
3ZK6
1
40
Q07817
A
1
5
44
81
209
3ZK6
81
209
Q07817
A
1
45
173
1
40
3ZK6
1
40
Q07817
B
1
5
44
81
209
3ZK6
81
209
Q07817
B
1
45
173
1
expression tag
MET
-3
3ZK6
A
Q07817
UNP
1
1
expression tag
SER
-2
3ZK6
A
Q07817
UNP
2
1
expression tag
MET
-1
3ZK6
A
Q07817
UNP
3
1
expression tag
ALA
0
3ZK6
A
Q07817
UNP
4
1
expression tag
LEU
210
3ZK6
A
Q07817
UNP
174
1
expression tag
GLU
211
3ZK6
A
Q07817
UNP
175
1
expression tag
HIS
212
3ZK6
A
Q07817
UNP
176
1
expression tag
HIS
213
3ZK6
A
Q07817
UNP
177
1
expression tag
HIS
214
3ZK6
A
Q07817
UNP
178
1
expression tag
HIS
215
3ZK6
A
Q07817
UNP
179
1
expression tag
HIS
216
3ZK6
A
Q07817
UNP
180
1
expression tag
HIS
217
3ZK6
A
Q07817
UNP
181
3
expression tag
MET
-3
3ZK6
B
Q07817
UNP
1
3
expression tag
SER
-2
3ZK6
B
Q07817
UNP
2
3
expression tag
MET
-1
3ZK6
B
Q07817
UNP
3
3
expression tag
ALA
0
3ZK6
B
Q07817
UNP
4
3
expression tag
LEU
210
3ZK6
B
Q07817
UNP
174
3
expression tag
GLU
211
3ZK6
B
Q07817
UNP
175
3
expression tag
HIS
212
3ZK6
B
Q07817
UNP
176
3
expression tag
HIS
213
3ZK6
B
Q07817
UNP
177
3
expression tag
HIS
214
3ZK6
B
Q07817
UNP
178
3
expression tag
HIS
215
3ZK6
B
Q07817
UNP
179
3
expression tag
HIS
216
3ZK6
B
Q07817
UNP
180
3
expression tag
HIS
217
3ZK6
B
Q07817
UNP
181
BINDING SITE FOR RESIDUE H1I A 1198
A
H1I
1198
Software
18
BINDING SITE FOR RESIDUE H1I B 1198
B
H1I
1198
Software
15
A
PHE
97
A
PHE
61
18
1_555
A
ARG
102
A
ARG
66
18
1_555
A
PHE
105
A
PHE
69
18
1_555
A
SER
106
A
SER
70
18
1_555
A
LEU
108
A
LEU
72
18
1_555
A
LEU
130
A
LEU
94
18
1_555
A
ASN
136
A
ASN
100
18
1_555
A
GLY
138
A
GLY
102
18
1_555
A
ARG
139
A
ARG
103
18
1_555
A
ALA
142
A
ALA
106
18
1_555
A
SER
145
A
SER
109
18
1_555
A
PHE
146
A
PHE
110
18
1_555
A
HOH
2026
E
HOH
18
1_555
B
PHE
97
B
PHE
61
18
1_555
B
ALA
104
B
ALA
68
18
1_555
B
GLY
138
B
GLY
102
18
1_555
B
TYR
195
B
TYR
159
18
1_555
B
H1I
1198
D
H1I
18
1_555
A
PHE
97
A
PHE
61
15
1_555
A
ALA
104
A
ALA
68
15
1_555
A
TYR
195
A
TYR
159
15
1_555
A
H1I
1198
C
H1I
15
1_555
A
HOH
2026
E
HOH
15
1_555
B
ARG
102
B
ARG
66
15
1_555
B
PHE
105
B
PHE
69
15
1_555
B
SER
106
B
SER
70
15
1_555
B
ASP
107
B
ASP
71
15
1_555
B
LEU
108
B
LEU
72
15
1_555
B
THR
109
B
THR
73
15
1_555
B
GLU
129
B
GLU
93
15
1_555
B
LEU
130
B
LEU
94
15
1_555
B
ASN
136
B
ASN
100
15
1_555
B
ARG
139
B
ARG
103
15
1_555
76
P 41