0.015172 0.000000 0.000000 0.000000 0.015172 0.000000 0.000000 0.000000 0.008690 0.00000 0.00000 0.00000 Czabotar, P.E. Lessene, G.L. Smith, B.J. Colman, P.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 65.911 65.911 115.072 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C23 H18 N4 O2 S 414.480 6-[(8E)-8-(1,3-benzothiazol-2-ylhydrazinylidene)-6,7-dihydro-5H-naphthalen-2-yl]pyridine-2-carboxylic acid non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N C N 149 N O Y 150 N C Y 151 N N Y 152 N C Y 153 N C Y 154 N C Y 155 N C Y 156 N C Y 157 N C Y 158 N C Y 159 N C N 160 N C N 161 N C N 162 N C Y 163 N C Y 164 N C N 165 N C N 166 N N N 167 N N Y 168 N C Y 169 N S Y 170 N C Y 171 N C Y 172 N C Y 173 N N Y 174 N C Y 175 N C Y 176 N C N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C Y 200 N C Y 201 N N Y 202 N C Y 203 N C Y 204 N N N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N O N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 S C N 224 N C N 225 N C N 226 N C N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C N 246 N C N 247 N C N 248 N C N 249 N O N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N C N 270 N C N 271 N N N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N S N 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N O N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N S N 363 N O N 364 N O N 365 N O N 366 N O N 367 N N N 368 S C N 369 N C N 370 N O N 371 R C N 372 N O N 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N N Y 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C Y 420 N C Y 421 N C N 422 N O N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N N N 436 S C N 437 N C N 438 N O N 439 N C N 440 N C N 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing Y 141 N doub Y 142 N sing Y 143 N sing Y 144 N doub Y 145 N sing Y 146 N doub N 147 N sing Y 148 N sing Y 149 N doub Y 150 N doub Y 151 N sing N 152 N sing Y 153 N doub N 154 N sing N 155 N sing N 156 N sing Y 157 N sing N 158 N sing N 159 E doub N 160 N sing N 161 N sing Y 162 N sing Y 163 N doub Y 164 N sing Y 165 N sing Y 166 N doub Y 167 N doub Y 168 N sing Y 169 N sing Y 170 N sing Y 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing Y 201 N sing Y 202 N doub Y 203 N doub N 204 N sing Y 205 N sing N 206 N sing Y 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing Y 309 N doub Y 310 N sing Y 311 N sing N 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing Y 382 N doub Y 383 N sing Y 384 N sing N 385 N sing Y 386 N doub Y 387 N sing Y 388 N sing N 389 N sing Y 390 N sing Y 391 N doub N 392 N sing Y 393 N doub N 394 N sing Y 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N doub N 406 N sing N 407 N sing N 408 N sing N 409 N sing Y 410 N doub Y 411 N sing Y 412 N sing N 413 N sing Y 414 N doub N 415 N sing Y 416 N doub N 417 N sing Y 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing US Nat.Chem.Biol. 1552-4450 9 390 397 10.1038/NCHEMBIO.1246 23603658 Structure-Guided Design of a Selective Bcl-Xl Inhibitor 2013 10.2210/pdb3zln/pdb pdb_00003zln 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MEECO CAPILLARY IMAGE PLATE 2006-10-25 RIGAKU RAXIS-IV NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX 20804.918 BCL-2-LIKE PROTEIN 1 RESIDUES 1-44 AND 85-209 1 man polymer 414.480 6-[(8E)-8-(1,3-benzothiazol-2-ylhydrazinylidene)-6,7-dihydro-5H-naphthalen-2-yl]pyridine-2-carboxylic acid 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 62.068 1,2-ETHANEDIOL 5 syn non-polymer 18.015 water 146 nat water BCL2-L-1, APOPTOSIS REGULATOR BCL-X, BCL-XL no no MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG NNAAAESRKGQERLEHHHHHH MSMAMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITP GTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG NNAAAESRKGQERLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 469008 ESCHERICHIA COLI BL21(DE3) PGEX-6P3 PLASMID 1 3.01 59.01 NONE 8.0 1.8 M (NH4)2 SO4, 40 MM MG2 SO4, 10 MM TRIS PH 8.0 citation struct chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_site repository Initial release Database references Database references Data collection Database references Structure summary Data collection Database references Derived calculations Other Refinement description 1 0 2013-04-24 1 1 2013-05-08 1 2 2013-06-05 1 3 2018-06-13 1 4 2023-12-20 _citation.page_last _struct.title _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 2). CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 6). CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (WEHI-539). PDBE Y PDBE 2013-02-04 REL REL H0Y 6-[(8E)-8-(1,3-benzothiazol-2-ylhydrazinylidene)-6,7-dihydro-5H-naphthalen-2-yl]pyridine-2-carboxylic acid SO4 SULFATE ION EDO 1,2-ETHANEDIOL HOH water RESIDUES 45 TO 84 REMOVED, LAST 25 RESIDUES TRUNCATED 3ZK6 PDB ENTRY 3ZK6 CHAIN A PDB experimental model H0Y 1197 2 H0Y H0Y 1197 A SO4 1198 3 SO4 SO4 1198 A EDO 1199 4 EDO EDO 1199 A EDO 1200 4 EDO EDO 1200 A EDO 1201 4 EDO EDO 1201 A EDO 1202 4 EDO EDO 1202 A EDO 1203 4 EDO EDO 1203 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2026 5 HOH HOH 2026 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2073 5 HOH HOH 2073 A HOH 2074 5 HOH HOH 2074 A HOH 2075 5 HOH HOH 2075 A HOH 2076 5 HOH HOH 2076 A HOH 2077 5 HOH HOH 2077 A HOH 2078 5 HOH HOH 2078 A HOH 2079 5 HOH HOH 2079 A HOH 2080 5 HOH HOH 2080 A HOH 2081 5 HOH HOH 2081 A HOH 2082 5 HOH HOH 2082 A HOH 2083 5 HOH HOH 2083 A HOH 2084 5 HOH HOH 2084 A HOH 2085 5 HOH HOH 2085 A HOH 2086 5 HOH HOH 2086 A HOH 2087 5 HOH HOH 2087 A HOH 2088 5 HOH HOH 2088 A HOH 2089 5 HOH HOH 2089 A HOH 2090 5 HOH HOH 2090 A HOH 2091 5 HOH HOH 2091 A HOH 2092 5 HOH HOH 2092 A HOH 2093 5 HOH HOH 2093 A HOH 2094 5 HOH HOH 2094 A HOH 2095 5 HOH HOH 2095 A HOH 2096 5 HOH HOH 2096 A HOH 2097 5 HOH HOH 2097 A HOH 2098 5 HOH HOH 2098 A HOH 2099 5 HOH HOH 2099 A HOH 2100 5 HOH HOH 2100 A HOH 2101 5 HOH HOH 2101 A HOH 2102 5 HOH HOH 2102 A HOH 2103 5 HOH HOH 2103 A HOH 2104 5 HOH HOH 2104 A HOH 2105 5 HOH HOH 2105 A HOH 2106 5 HOH HOH 2106 A HOH 2107 5 HOH HOH 2107 A HOH 2108 5 HOH HOH 2108 A HOH 2109 5 HOH HOH 2109 A HOH 2110 5 HOH HOH 2110 A HOH 2111 5 HOH HOH 2111 A HOH 2112 5 HOH HOH 2112 A HOH 2113 5 HOH HOH 2113 A HOH 2114 5 HOH HOH 2114 A HOH 2115 5 HOH HOH 2115 A HOH 2116 5 HOH HOH 2116 A HOH 2117 5 HOH HOH 2117 A HOH 2118 5 HOH HOH 2118 A HOH 2119 5 HOH HOH 2119 A HOH 2120 5 HOH HOH 2120 A HOH 2121 5 HOH HOH 2121 A HOH 2122 5 HOH HOH 2122 A HOH 2123 5 HOH HOH 2123 A HOH 2124 5 HOH HOH 2124 A HOH 2125 5 HOH HOH 2125 A HOH 2126 5 HOH HOH 2126 A HOH 2127 5 HOH HOH 2127 A HOH 2128 5 HOH HOH 2128 A HOH 2129 5 HOH HOH 2129 A HOH 2130 5 HOH HOH 2130 A HOH 2131 5 HOH HOH 2131 A HOH 2132 5 HOH HOH 2132 A HOH 2133 5 HOH HOH 2133 A HOH 2134 5 HOH HOH 2134 A HOH 2135 5 HOH HOH 2135 A HOH 2136 5 HOH HOH 2136 A HOH 2137 5 HOH HOH 2137 A HOH 2138 5 HOH HOH 2138 A HOH 2139 5 HOH HOH 2139 A HOH 2140 5 HOH HOH 2140 A HOH 2141 5 HOH HOH 2141 A HOH 2142 5 HOH HOH 2142 A HOH 2143 5 HOH HOH 2143 A HOH 2144 5 HOH HOH 2144 A HOH 2145 5 HOH HOH 2145 A HOH 2146 5 HOH HOH 2146 A n 1 -3 A n 2 -2 A n 3 -1 A n 4 0 A MET 1 n 5 MET 1 A SER 2 n 6 SER 2 A GLN 3 n 7 GLN 3 A SER 4 n 8 SER 4 A ASN 5 n 9 ASN 5 A ARG 6 n 10 ARG 6 A GLU 7 n 11 GLU 7 A LEU 8 n 12 LEU 8 A VAL 9 n 13 VAL 9 A VAL 10 n 14 VAL 10 A ASP 11 n 15 ASP 11 A PHE 12 n 16 PHE 12 A LEU 13 n 17 LEU 13 A SER 14 n 18 SER 14 A TYR 15 n 19 TYR 15 A LYS 16 n 20 LYS 16 A LEU 17 n 21 LEU 17 A SER 18 n 22 SER 18 A GLN 19 n 23 GLN 19 A LYS 20 n 24 LYS 20 A GLY 21 n 25 GLY 21 A TYR 22 n 26 TYR 22 A SER 23 n 27 SER 23 A TRP 24 n 28 TRP 24 A SER 25 n 29 SER 25 A GLN 26 n 30 GLN 26 A PHE 27 n 31 PHE 27 A n 32 28 A n 33 29 A n 34 30 A n 35 31 A n 36 32 A n 37 33 A n 38 34 A n 39 35 A n 40 36 A n 41 37 A n 42 38 A n 43 39 A n 44 40 A THR 41 n 45 THR 41 A GLU 42 n 46 GLU 42 A SER 43 n 47 SER 43 A GLU 44 n 48 GLU 44 A ALA 85 n 49 ALA 85 A VAL 86 n 50 VAL 86 A LYS 87 n 51 LYS 87 A GLN 88 n 52 GLN 88 A ALA 89 n 53 ALA 89 A LEU 90 n 54 LEU 90 A ARG 91 n 55 ARG 91 A GLU 92 n 56 GLU 92 A ALA 93 n 57 ALA 93 A GLY 94 n 58 GLY 94 A ASP 95 n 59 ASP 95 A GLU 96 n 60 GLU 96 A PHE 97 n 61 PHE 97 A GLU 98 n 62 GLU 98 A LEU 99 n 63 LEU 99 A ARG 100 n 64 ARG 100 A TYR 101 n 65 TYR 101 A ARG 102 n 66 ARG 102 A ARG 103 n 67 ARG 103 A ALA 104 n 68 ALA 104 A PHE 105 n 69 PHE 105 A SER 106 n 70 SER 106 A ASP 107 n 71 ASP 107 A LEU 108 n 72 LEU 108 A THR 109 n 73 THR 109 A SER 110 n 74 SER 110 A GLN 111 n 75 GLN 111 A LEU 112 n 76 LEU 112 A HIS 113 n 77 HIS 113 A ILE 114 n 78 ILE 114 A THR 115 n 79 THR 115 A PRO 116 n 80 PRO 116 A GLY 117 n 81 GLY 117 A THR 118 n 82 THR 118 A ALA 119 n 83 ALA 119 A TYR 120 n 84 TYR 120 A GLN 121 n 85 GLN 121 A SER 122 n 86 SER 122 A PHE 123 n 87 PHE 123 A GLU 124 n 88 GLU 124 A GLN 125 n 89 GLN 125 A VAL 126 n 90 VAL 126 A VAL 127 n 91 VAL 127 A ASN 128 n 92 ASN 128 A GLU 129 n 93 GLU 129 A LEU 130 n 94 LEU 130 A PHE 131 n 95 PHE 131 A ARG 132 n 96 ARG 132 A ASP 133 n 97 ASP 133 A GLY 134 n 98 GLY 134 A VAL 135 n 99 VAL 135 A ASN 136 n 100 ASN 136 A TRP 137 n 101 TRP 137 A GLY 138 n 102 GLY 138 A ARG 139 n 103 ARG 139 A ILE 140 n 104 ILE 140 A VAL 141 n 105 VAL 141 A ALA 142 n 106 ALA 142 A PHE 143 n 107 PHE 143 A PHE 144 n 108 PHE 144 A SER 145 n 109 SER 145 A PHE 146 n 110 PHE 146 A GLY 147 n 111 GLY 147 A GLY 148 n 112 GLY 148 A ALA 149 n 113 ALA 149 A LEU 150 n 114 LEU 150 A CYS 151 n 115 CYS 151 A VAL 152 n 116 VAL 152 A GLU 153 n 117 GLU 153 A SER 154 n 118 SER 154 A VAL 155 n 119 VAL 155 A ASP 156 n 120 ASP 156 A LYS 157 n 121 LYS 157 A GLU 158 n 122 GLU 158 A MET 159 n 123 MET 159 A GLN 160 n 124 GLN 160 A VAL 161 n 125 VAL 161 A LEU 162 n 126 LEU 162 A VAL 163 n 127 VAL 163 A SER 164 n 128 SER 164 A ARG 165 n 129 ARG 165 A ILE 166 n 130 ILE 166 A ALA 167 n 131 ALA 167 A ALA 168 n 132 ALA 168 A TRP 169 n 133 TRP 169 A MET 170 n 134 MET 170 A ALA 171 n 135 ALA 171 A THR 172 n 136 THR 172 A TYR 173 n 137 TYR 173 A LEU 174 n 138 LEU 174 A ASN 175 n 139 ASN 175 A ASP 176 n 140 ASP 176 A HIS 177 n 141 HIS 177 A LEU 178 n 142 LEU 178 A GLU 179 n 143 GLU 179 A PRO 180 n 144 PRO 180 A TRP 181 n 145 TRP 181 A ILE 182 n 146 ILE 182 A GLN 183 n 147 GLN 183 A GLU 184 n 148 GLU 184 A ASN 185 n 149 ASN 185 A GLY 186 n 150 GLY 186 A GLY 187 n 151 GLY 187 A TRP 188 n 152 TRP 188 A ASP 189 n 153 ASP 189 A THR 190 n 154 THR 190 A PHE 191 n 155 PHE 191 A VAL 192 n 156 VAL 192 A GLU 193 n 157 GLU 193 A LEU 194 n 158 LEU 194 A TYR 195 n 159 TYR 195 A GLY 196 n 160 GLY 196 A ASN 197 n 161 ASN 197 A n 162 198 A n 163 199 A n 164 200 A n 165 201 A n 166 202 A n 167 203 A n 168 204 A n 169 205 A n 170 206 A n 171 207 A n 172 208 A n 173 209 A n 174 210 A n 175 211 A n 176 212 A n 177 213 A n 178 214 A n 179 215 A n 180 216 A n 181 217 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG GLU 42 A CG GLU 46 1 Y 1 A CD GLU 42 A CD GLU 46 1 Y 1 A OE1 GLU 42 A OE1 GLU 46 1 Y 1 A OE2 GLU 42 A OE2 GLU 46 1 Y 1 A CA ASN 197 A CA ASN 161 1 Y 1 A C ASN 197 A C ASN 161 1 Y 1 A O ASN 197 A O ASN 161 1 Y 1 A CB ASN 197 A CB ASN 161 1 Y 1 A CG ASN 197 A CG ASN 161 1 Y 1 A OD1 ASN 197 A OD1 ASN 161 1 Y 1 A ND2 ASN 197 A ND2 ASN 161 1 Y 1 A MET -3 A MET 1 1 Y 1 A SER -2 A SER 2 1 Y 1 A MET -1 A MET 3 1 Y 1 A ALA 0 A ALA 4 1 Y 1 A SER 28 A SER 32 1 Y 1 A ASP 29 A ASP 33 1 Y 1 A VAL 30 A VAL 34 1 Y 1 A GLU 31 A GLU 35 1 Y 1 A GLU 32 A GLU 36 1 Y 1 A ASN 33 A ASN 37 1 Y 1 A ARG 34 A ARG 38 1 Y 1 A THR 35 A THR 39 1 Y 1 A GLU 36 A GLU 40 1 Y 1 A ALA 37 A ALA 41 1 Y 1 A PRO 38 A PRO 42 1 Y 1 A GLU 39 A GLU 43 1 Y 1 A GLY 40 A GLY 44 1 Y 1 A ASN 198 A ASN 162 1 Y 1 A ALA 199 A ALA 163 1 Y 1 A ALA 200 A ALA 164 1 Y 1 A ALA 201 A ALA 165 1 Y 1 A GLU 202 A GLU 166 1 Y 1 A SER 203 A SER 167 1 Y 1 A ARG 204 A ARG 168 1 Y 1 A LYS 205 A LYS 169 1 Y 1 A GLY 206 A GLY 170 1 Y 1 A GLN 207 A GLN 171 1 Y 1 A GLU 208 A GLU 172 1 Y 1 A ARG 209 A ARG 173 1 Y 1 A LEU 210 A LEU 174 1 Y 1 A GLU 211 A GLU 175 1 Y 1 A HIS 212 A HIS 176 1 Y 1 A HIS 213 A HIS 177 1 Y 1 A HIS 214 A HIS 178 1 Y 1 A HIS 215 A HIS 179 1 Y 1 A HIS 216 A HIS 180 1 Y 1 A HIS 217 A HIS 181 1 Y 1 A LYS 157 -96.50 30.43 0.2465 0.1835 0.1864 2.288 31.682 551 11658 4.7 96.82 0.21 1 1.35 MOLECULAR REPLACEMENT 23.01 0.90 1.11 PDB ENTRY 3ZK6 CHAIN A ML FLAT BULK SOLVENT MODEL 2.288 31.682 146 1362 55 0 1161 0.007 1260 1.140 1699 13.109 444 0.078 170 0.004 216 0.2989 0.2380 2.5180 135 2646 95.00 0.2872 0.2004 2.8821 135 2727 97.00 0.2250 0.1692 3.6303 150 2769 98.00 0.2254 0.1685 31.6849 131 2965 98.00 2.29 50.00 3ZLN 11658 -3.0 0.13 1 8.95 3.3 96.8 0.50 2.29 2.37 2.75 1 3 93.2 refinement PHENIX (PHENIX.REFINE: 1.8.1_1168) data reduction DENZO data scaling SCALEPACK phasing PHASER Crystal structure of BCL-XL in complex with inhibitor (Compound 3) 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N A MET 1 A MET 5 HELX_P A GLY 21 A GLY 25 1 1 21 A THR 41 A THR 45 HELX_P A TYR 101 A TYR 65 1 2 21 A ARG 102 A ARG 66 HELX_P A PHE 105 A PHE 69 5 3 4 A ASP 107 A ASP 71 HELX_P A LEU 112 A LEU 76 5 4 6 A ALA 119 A ALA 83 HELX_P A ASN 128 A ASN 92 1 5 10 A GLU 129 A GLU 93 HELX_P A ARG 132 A ARG 96 5 6 4 A ASN 136 A ASN 100 HELX_P A LYS 157 A LYS 121 1 7 22 A VAL 161 A VAL 125 HELX_P A LEU 178 A LEU 142 1 8 18 A LEU 178 A LEU 142 HELX_P A ASN 185 A ASN 149 1 9 8 A GLY 186 A GLY 150 HELX_P A GLY 196 A GLY 160 1 10 11 APOPTOSIS APOPTOSIS, INHIBITOR B2CL1_HUMAN UNP 1 Q07817 1 44 3ZLN 1 44 Q07817 A 1 5 48 85 209 3ZLN 85 209 Q07817 A 1 49 173 1 expression tag MET -3 3ZLN A Q07817 UNP 1 1 expression tag SER -2 3ZLN A Q07817 UNP 2 1 expression tag MET -1 3ZLN A Q07817 UNP 3 1 expression tag ALA 0 3ZLN A Q07817 UNP 4 1 expression tag LEU 210 3ZLN A Q07817 UNP 174 1 expression tag GLU 211 3ZLN A Q07817 UNP 175 1 expression tag HIS 212 3ZLN A Q07817 UNP 176 1 expression tag HIS 213 3ZLN A Q07817 UNP 177 1 expression tag HIS 214 3ZLN A Q07817 UNP 178 1 expression tag HIS 215 3ZLN A Q07817 UNP 179 1 expression tag HIS 216 3ZLN A Q07817 UNP 180 1 expression tag HIS 217 3ZLN A Q07817 UNP 181 BINDING SITE FOR RESIDUE H0Y A 1197 A H0Y 1197 Software 14 BINDING SITE FOR RESIDUE SO4 A 1198 A SO4 1198 Software 6 BINDING SITE FOR RESIDUE EDO A 1199 A EDO 1199 Software 3 BINDING SITE FOR RESIDUE EDO A 1200 A EDO 1200 Software 4 BINDING SITE FOR RESIDUE EDO A 1201 A EDO 1201 Software 4 BINDING SITE FOR RESIDUE EDO A 1202 A EDO 1202 Software 7 BINDING SITE FOR RESIDUE EDO A 1203 A EDO 1203 Software 6 A PHE 105 A PHE 69 14 1_555 A SER 106 A SER 70 14 1_555 A ASP 107 A ASP 71 14 1_555 A LEU 108 A LEU 72 14 1_555 A GLU 129 A GLU 93 14 1_555 A LEU 130 A LEU 94 14 1_555 A ARG 132 A ARG 96 14 1_555 A ASN 136 A ASN 100 14 1_555 A GLY 138 A GLY 102 14 1_555 A ARG 139 A ARG 103 14 1_555 A PHE 146 A PHE 110 14 1_555 A SO4 1198 C SO4 14 1_555 A HOH 2112 I HOH 14 5_445 A HOH 2143 I HOH 14 1_555 A PHE 105 A PHE 69 6 1_555 A SER 106 A SER 70 6 1_555 A ARG 132 A ARG 96 6 1_555 A VAL 161 A VAL 125 6 5_445 A H0Y 1197 B H0Y 6 1_555 A HOH 2060 I HOH 6 1_555 A LYS 20 A LYS 24 3 1_555 A GLU 98 A GLU 62 3 1_555 A GLU 184 A GLU 148 3 3_455 A ASN 136 A ASN 100 4 1_555 A TRP 137 A TRP 101 4 1_555 A GLY 138 A GLY 102 4 1_555 A TYR 195 A TYR 159 4 1_555 A ARG 91 A ARG 55 4 1_555 A GLU 92 A GLU 56 4 1_555 A EDO 1202 G EDO 4 1_555 A EDO 1203 H EDO 4 1_555 A TYR 15 A TYR 19 7 1_555 A GLN 19 A GLN 23 7 1_555 A PRO 180 A PRO 144 7 3_455 A GLN 183 A GLN 147 7 3_455 A GLU 184 A GLU 148 7 3_455 A EDO 1201 F EDO 7 1_555 A HOH 2145 I HOH 7 1_555 A TYR 15 A TYR 19 6 1_555 A ASN 175 A ASN 139 6 3_455 A ASP 176 A ASP 140 6 3_455 A PRO 180 A PRO 144 6 3_455 A EDO 1201 F EDO 6 1_555 A HOH 2145 I HOH 6 1_555 92 P 41 21 2