0.017781
0.000000
0.000000
0.000000
0.017781
0.000000
0.000000
0.000000
0.004718
0.00000
0.00000
0.00000
Czabotar, P.E.
Lessene, G.L.
Smith, B.J.
Colman, P.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
56.241
56.241
211.950
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C31 H29 N5 O3 S2
583.724
5-[3-[4-(aminomethyl)phenoxy]propyl]-2-[(8E)-8-(1,3-benzothiazol-2-ylhydrazinylidene)-6,7-dihydro-5H-naphthalen-2-yl]-1,3-thiazole-4-carboxylic acid
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
Y
152
N
C
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
S
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
S
N
315
N
O
N
316
N
O
N
317
N
O
N
318
N
O
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
R
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
N
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
N
374
N
O
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
O
N
407
N
C
N
408
N
O
Y
409
N
C
Y
410
N
N
Y
411
N
C
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
C
N
421
N
N
Y
422
N
C
Y
423
N
C
Y
424
N
S
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
N
430
N
C
N
431
N
C
N
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
C
N
436
N
N
N
437
N
N
Y
438
N
C
Y
439
N
S
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
N
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
Y
392
N
sing
Y
393
N
doub
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
sing
Y
402
N
doub
Y
403
N
doub
Y
404
N
sing
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
sing
Y
412
N
doub
Y
413
N
doub
Y
414
N
sing
N
415
N
sing
Y
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
E
doub
N
423
N
sing
N
424
N
sing
Y
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
Y
429
N
doub
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
Y
433
N
sing
Y
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
US
Nat.Chem.Biol.
1552-4450
9
390
397
10.1038/NCHEMBIO.1246
23603658
Structure-Guided Design of a Selective Bcl-Xl Inhibitor
2013
10.2210/pdb3zlr/pdb
pdb_00003zlr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MEECO CAPILLARY
IMAGE PLATE
2007-10-25
RIGAKU RAXIS-IV
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX
17917.959
BCL-2-LIKE PROTEIN 1
RESIDUES 1-26,83-209
2
man
polymer
583.724
5-[3-[4-(aminomethyl)phenoxy]propyl]-2-[(8E)-8-(1,3-benzothiazol-2-ylhydrazinylidene)-6,7-dihydro-5H-naphthalen-2-yl]-1,3-thiazole-4-carboxylic acid
2
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
262
nat
water
BCL2-L-1, APOPTOSIS REGULATOR BCL-X, BCL-XL
no
no
GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF
RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER
GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF
RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
PGEX-6P3
PLASMID
1
2.34
47.36
NONE
5.5
1.6 M (NH4)2 SO4, 100 MM MES PH 5.5
citation
struct
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Structure summary
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-04-24
1
1
2013-05-08
1
2
2013-06-05
1
3
2018-06-13
1
4
2023-12-20
_citation.page_last
_struct.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 3).
CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 6).
CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 2).
PDBE
Y
PDBE
2013-02-04
REL
REL
X0B
5-[3-[4-(aminomethyl)phenoxy]propyl]-2-[(8E)-8-(1,3-benzothiazol-2-ylhydrazinylidene)-6,7-dihydro-5H-naphthalen-2-yl]-1,3-thiazole-4-carboxylic acid
EDO
1,2-ETHANEDIOL
SO4
SULFATE ION
HOH
water
3ZK6
PDB ENTRY 3ZK6 CHAIN A
PDB
experimental model
X0B
1198
2
X0B
X0B
1198
A
EDO
1199
3
EDO
EDO
1199
A
EDO
1200
3
EDO
EDO
1200
A
SO4
1201
4
SO4
SO4
1201
A
X0B
1204
2
X0B
X0B
1204
B
SO4
1205
4
SO4
SO4
1205
B
SO4
1206
4
SO4
SO4
1206
B
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2153
5
HOH
HOH
2153
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2156
5
HOH
HOH
2156
A
HOH
2157
5
HOH
HOH
2157
A
HOH
2158
5
HOH
HOH
2158
A
HOH
2159
5
HOH
HOH
2159
A
HOH
2160
5
HOH
HOH
2160
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
HOH
2021
5
HOH
HOH
2021
B
HOH
2022
5
HOH
HOH
2022
B
HOH
2023
5
HOH
HOH
2023
B
HOH
2024
5
HOH
HOH
2024
B
HOH
2025
5
HOH
HOH
2025
B
HOH
2026
5
HOH
HOH
2026
B
HOH
2027
5
HOH
HOH
2027
B
HOH
2028
5
HOH
HOH
2028
B
HOH
2029
5
HOH
HOH
2029
B
HOH
2030
5
HOH
HOH
2030
B
HOH
2031
5
HOH
HOH
2031
B
HOH
2032
5
HOH
HOH
2032
B
HOH
2033
5
HOH
HOH
2033
B
HOH
2034
5
HOH
HOH
2034
B
HOH
2035
5
HOH
HOH
2035
B
HOH
2036
5
HOH
HOH
2036
B
HOH
2037
5
HOH
HOH
2037
B
HOH
2038
5
HOH
HOH
2038
B
HOH
2039
5
HOH
HOH
2039
B
HOH
2040
5
HOH
HOH
2040
B
HOH
2041
5
HOH
HOH
2041
B
HOH
2042
5
HOH
HOH
2042
B
HOH
2043
5
HOH
HOH
2043
B
HOH
2044
5
HOH
HOH
2044
B
HOH
2045
5
HOH
HOH
2045
B
HOH
2046
5
HOH
HOH
2046
B
HOH
2047
5
HOH
HOH
2047
B
HOH
2048
5
HOH
HOH
2048
B
HOH
2049
5
HOH
HOH
2049
B
HOH
2050
5
HOH
HOH
2050
B
HOH
2051
5
HOH
HOH
2051
B
HOH
2052
5
HOH
HOH
2052
B
HOH
2053
5
HOH
HOH
2053
B
HOH
2054
5
HOH
HOH
2054
B
HOH
2055
5
HOH
HOH
2055
B
HOH
2056
5
HOH
HOH
2056
B
HOH
2057
5
HOH
HOH
2057
B
HOH
2058
5
HOH
HOH
2058
B
HOH
2059
5
HOH
HOH
2059
B
HOH
2060
5
HOH
HOH
2060
B
HOH
2061
5
HOH
HOH
2061
B
HOH
2062
5
HOH
HOH
2062
B
HOH
2063
5
HOH
HOH
2063
B
HOH
2064
5
HOH
HOH
2064
B
HOH
2065
5
HOH
HOH
2065
B
HOH
2066
5
HOH
HOH
2066
B
HOH
2067
5
HOH
HOH
2067
B
HOH
2068
5
HOH
HOH
2068
B
HOH
2069
5
HOH
HOH
2069
B
HOH
2070
5
HOH
HOH
2070
B
HOH
2071
5
HOH
HOH
2071
B
HOH
2072
5
HOH
HOH
2072
B
HOH
2073
5
HOH
HOH
2073
B
HOH
2074
5
HOH
HOH
2074
B
HOH
2075
5
HOH
HOH
2075
B
HOH
2076
5
HOH
HOH
2076
B
HOH
2077
5
HOH
HOH
2077
B
HOH
2078
5
HOH
HOH
2078
B
HOH
2079
5
HOH
HOH
2079
B
HOH
2080
5
HOH
HOH
2080
B
HOH
2081
5
HOH
HOH
2081
B
HOH
2082
5
HOH
HOH
2082
B
HOH
2083
5
HOH
HOH
2083
B
HOH
2084
5
HOH
HOH
2084
B
HOH
2085
5
HOH
HOH
2085
B
HOH
2086
5
HOH
HOH
2086
B
HOH
2087
5
HOH
HOH
2087
B
HOH
2088
5
HOH
HOH
2088
B
HOH
2089
5
HOH
HOH
2089
B
HOH
2090
5
HOH
HOH
2090
B
HOH
2091
5
HOH
HOH
2091
B
HOH
2092
5
HOH
HOH
2092
B
HOH
2093
5
HOH
HOH
2093
B
HOH
2094
5
HOH
HOH
2094
B
HOH
2095
5
HOH
HOH
2095
B
HOH
2096
5
HOH
HOH
2096
B
HOH
2097
5
HOH
HOH
2097
B
GLY
-4
n
1
GLY
-4
A
PRO
-3
n
2
PRO
-3
A
LEU
-2
n
3
LEU
-2
A
GLY
-1
n
4
GLY
-1
A
SER
0
n
5
SER
0
A
MET
1
n
6
MET
1
A
SER
2
n
7
SER
2
A
GLN
3
n
8
GLN
3
A
SER
4
n
9
SER
4
A
ASN
5
n
10
ASN
5
A
ARG
6
n
11
ARG
6
A
GLU
7
n
12
GLU
7
A
LEU
8
n
13
LEU
8
A
VAL
9
n
14
VAL
9
A
VAL
10
n
15
VAL
10
A
ASP
11
n
16
ASP
11
A
PHE
12
n
17
PHE
12
A
LEU
13
n
18
LEU
13
A
SER
14
n
19
SER
14
A
TYR
15
n
20
TYR
15
A
LYS
16
n
21
LYS
16
A
LEU
17
n
22
LEU
17
A
SER
18
n
23
SER
18
A
GLN
19
n
24
GLN
19
A
LYS
20
n
25
LYS
20
A
GLY
21
n
26
GLY
21
A
TYR
22
n
27
TYR
22
A
SER
23
n
28
SER
23
A
TRP
24
n
29
TRP
24
A
SER
25
n
30
SER
25
A
GLN
26
n
31
GLN
26
A
MET
83
n
32
MET
83
A
ALA
84
n
33
ALA
84
A
ALA
85
n
34
ALA
85
A
VAL
86
n
35
VAL
86
A
LYS
87
n
36
LYS
87
A
GLN
88
n
37
GLN
88
A
ALA
89
n
38
ALA
89
A
LEU
90
n
39
LEU
90
A
ARG
91
n
40
ARG
91
A
GLU
92
n
41
GLU
92
A
ALA
93
n
42
ALA
93
A
GLY
94
n
43
GLY
94
A
ASP
95
n
44
ASP
95
A
GLU
96
n
45
GLU
96
A
PHE
97
n
46
PHE
97
A
GLU
98
n
47
GLU
98
A
LEU
99
n
48
LEU
99
A
ARG
100
n
49
ARG
100
A
TYR
101
n
50
TYR
101
A
ARG
102
n
51
ARG
102
A
ARG
103
n
52
ARG
103
A
ALA
104
n
53
ALA
104
A
PHE
105
n
54
PHE
105
A
SER
106
n
55
SER
106
A
ASP
107
n
56
ASP
107
A
LEU
108
n
57
LEU
108
A
THR
109
n
58
THR
109
A
SER
110
n
59
SER
110
A
GLN
111
n
60
GLN
111
A
LEU
112
n
61
LEU
112
A
HIS
113
n
62
HIS
113
A
ILE
114
n
63
ILE
114
A
THR
115
n
64
THR
115
A
PRO
116
n
65
PRO
116
A
GLY
117
n
66
GLY
117
A
THR
118
n
67
THR
118
A
ALA
119
n
68
ALA
119
A
TYR
120
n
69
TYR
120
A
GLN
121
n
70
GLN
121
A
SER
122
n
71
SER
122
A
PHE
123
n
72
PHE
123
A
GLU
124
n
73
GLU
124
A
GLN
125
n
74
GLN
125
A
VAL
126
n
75
VAL
126
A
VAL
127
n
76
VAL
127
A
ASN
128
n
77
ASN
128
A
GLU
129
n
78
GLU
129
A
LEU
130
n
79
LEU
130
A
PHE
131
n
80
PHE
131
A
ARG
132
n
81
ARG
132
A
ASP
133
n
82
ASP
133
A
GLY
134
n
83
GLY
134
A
VAL
135
n
84
VAL
135
A
ASN
136
n
85
ASN
136
A
TRP
137
n
86
TRP
137
A
GLY
138
n
87
GLY
138
A
ARG
139
n
88
ARG
139
A
ILE
140
n
89
ILE
140
A
VAL
141
n
90
VAL
141
A
ALA
142
n
91
ALA
142
A
PHE
143
n
92
PHE
143
A
PHE
144
n
93
PHE
144
A
SER
145
n
94
SER
145
A
PHE
146
n
95
PHE
146
A
GLY
147
n
96
GLY
147
A
GLY
148
n
97
GLY
148
A
ALA
149
n
98
ALA
149
A
LEU
150
n
99
LEU
150
A
CYS
151
n
100
CYS
151
A
VAL
152
n
101
VAL
152
A
GLU
153
n
102
GLU
153
A
SER
154
n
103
SER
154
A
VAL
155
n
104
VAL
155
A
ASP
156
n
105
ASP
156
A
LYS
157
n
106
LYS
157
A
GLU
158
n
107
GLU
158
A
MET
159
n
108
MET
159
A
GLN
160
n
109
GLN
160
A
VAL
161
n
110
VAL
161
A
LEU
162
n
111
LEU
162
A
VAL
163
n
112
VAL
163
A
SER
164
n
113
SER
164
A
ARG
165
n
114
ARG
165
A
ILE
166
n
115
ILE
166
A
ALA
167
n
116
ALA
167
A
ALA
168
n
117
ALA
168
A
TRP
169
n
118
TRP
169
A
MET
170
n
119
MET
170
A
ALA
171
n
120
ALA
171
A
THR
172
n
121
THR
172
A
TYR
173
n
122
TYR
173
A
LEU
174
n
123
LEU
174
A
ASN
175
n
124
ASN
175
A
ASP
176
n
125
ASP
176
A
HIS
177
n
126
HIS
177
A
LEU
178
n
127
LEU
178
A
GLU
179
n
128
GLU
179
A
PRO
180
n
129
PRO
180
A
TRP
181
n
130
TRP
181
A
ILE
182
n
131
ILE
182
A
GLN
183
n
132
GLN
183
A
GLU
184
n
133
GLU
184
A
ASN
185
n
134
ASN
185
A
GLY
186
n
135
GLY
186
A
GLY
187
n
136
GLY
187
A
TRP
188
n
137
TRP
188
A
ASP
189
n
138
ASP
189
A
THR
190
n
139
THR
190
A
PHE
191
n
140
PHE
191
A
VAL
192
n
141
VAL
192
A
GLU
193
n
142
GLU
193
A
LEU
194
n
143
LEU
194
A
TYR
195
n
144
TYR
195
A
GLY
196
n
145
GLY
196
A
ASN
197
n
146
ASN
197
A
n
147
198
A
n
148
199
A
n
149
200
A
n
150
201
A
n
151
202
A
n
152
203
A
n
153
204
A
n
154
205
A
n
155
206
A
n
156
207
A
n
157
208
A
n
158
209
A
n
1
-4
B
n
2
-3
B
n
3
-2
B
n
4
-1
B
n
5
0
B
n
6
1
B
n
7
2
B
n
8
3
B
SER
4
n
9
SER
4
B
ASN
5
n
10
ASN
5
B
ARG
6
n
11
ARG
6
B
GLU
7
n
12
GLU
7
B
LEU
8
n
13
LEU
8
B
VAL
9
n
14
VAL
9
B
VAL
10
n
15
VAL
10
B
ASP
11
n
16
ASP
11
B
PHE
12
n
17
PHE
12
B
LEU
13
n
18
LEU
13
B
SER
14
n
19
SER
14
B
TYR
15
n
20
TYR
15
B
LYS
16
n
21
LYS
16
B
LEU
17
n
22
LEU
17
B
SER
18
n
23
SER
18
B
GLN
19
n
24
GLN
19
B
LYS
20
n
25
LYS
20
B
GLY
21
n
26
GLY
21
B
TYR
22
n
27
TYR
22
B
SER
23
n
28
SER
23
B
TRP
24
n
29
TRP
24
B
SER
25
n
30
SER
25
B
GLN
26
n
31
GLN
26
B
MET
83
n
32
MET
83
B
ALA
84
n
33
ALA
84
B
ALA
85
n
34
ALA
85
B
VAL
86
n
35
VAL
86
B
LYS
87
n
36
LYS
87
B
GLN
88
n
37
GLN
88
B
ALA
89
n
38
ALA
89
B
LEU
90
n
39
LEU
90
B
ARG
91
n
40
ARG
91
B
GLU
92
n
41
GLU
92
B
ALA
93
n
42
ALA
93
B
GLY
94
n
43
GLY
94
B
ASP
95
n
44
ASP
95
B
GLU
96
n
45
GLU
96
B
PHE
97
n
46
PHE
97
B
GLU
98
n
47
GLU
98
B
LEU
99
n
48
LEU
99
B
ARG
100
n
49
ARG
100
B
TYR
101
n
50
TYR
101
B
ARG
102
n
51
ARG
102
B
ARG
103
n
52
ARG
103
B
ALA
104
n
53
ALA
104
B
PHE
105
n
54
PHE
105
B
SER
106
n
55
SER
106
B
ASP
107
n
56
ASP
107
B
LEU
108
n
57
LEU
108
B
THR
109
n
58
THR
109
B
SER
110
n
59
SER
110
B
GLN
111
n
60
GLN
111
B
LEU
112
n
61
LEU
112
B
HIS
113
n
62
HIS
113
B
ILE
114
n
63
ILE
114
B
THR
115
n
64
THR
115
B
PRO
116
n
65
PRO
116
B
GLY
117
n
66
GLY
117
B
THR
118
n
67
THR
118
B
ALA
119
n
68
ALA
119
B
TYR
120
n
69
TYR
120
B
GLN
121
n
70
GLN
121
B
SER
122
n
71
SER
122
B
PHE
123
n
72
PHE
123
B
GLU
124
n
73
GLU
124
B
GLN
125
n
74
GLN
125
B
VAL
126
n
75
VAL
126
B
VAL
127
n
76
VAL
127
B
ASN
128
n
77
ASN
128
B
GLU
129
n
78
GLU
129
B
LEU
130
n
79
LEU
130
B
PHE
131
n
80
PHE
131
B
ARG
132
n
81
ARG
132
B
ASP
133
n
82
ASP
133
B
GLY
134
n
83
GLY
134
B
VAL
135
n
84
VAL
135
B
ASN
136
n
85
ASN
136
B
TRP
137
n
86
TRP
137
B
GLY
138
n
87
GLY
138
B
ARG
139
n
88
ARG
139
B
ILE
140
n
89
ILE
140
B
VAL
141
n
90
VAL
141
B
ALA
142
n
91
ALA
142
B
PHE
143
n
92
PHE
143
B
PHE
144
n
93
PHE
144
B
SER
145
n
94
SER
145
B
PHE
146
n
95
PHE
146
B
GLY
147
n
96
GLY
147
B
GLY
148
n
97
GLY
148
B
ALA
149
n
98
ALA
149
B
LEU
150
n
99
LEU
150
B
CYS
151
n
100
CYS
151
B
VAL
152
n
101
VAL
152
B
GLU
153
n
102
GLU
153
B
SER
154
n
103
SER
154
B
VAL
155
n
104
VAL
155
B
ASP
156
n
105
ASP
156
B
LYS
157
n
106
LYS
157
B
GLU
158
n
107
GLU
158
B
MET
159
n
108
MET
159
B
GLN
160
n
109
GLN
160
B
VAL
161
n
110
VAL
161
B
LEU
162
n
111
LEU
162
B
VAL
163
n
112
VAL
163
B
SER
164
n
113
SER
164
B
ARG
165
n
114
ARG
165
B
ILE
166
n
115
ILE
166
B
ALA
167
n
116
ALA
167
B
ALA
168
n
117
ALA
168
B
TRP
169
n
118
TRP
169
B
MET
170
n
119
MET
170
B
ALA
171
n
120
ALA
171
B
THR
172
n
121
THR
172
B
TYR
173
n
122
TYR
173
B
LEU
174
n
123
LEU
174
B
ASN
175
n
124
ASN
175
B
ASP
176
n
125
ASP
176
B
HIS
177
n
126
HIS
177
B
LEU
178
n
127
LEU
178
B
GLU
179
n
128
GLU
179
B
PRO
180
n
129
PRO
180
B
TRP
181
n
130
TRP
181
B
ILE
182
n
131
ILE
182
B
GLN
183
n
132
GLN
183
B
GLU
184
n
133
GLU
184
B
ASN
185
n
134
ASN
185
B
GLY
186
n
135
GLY
186
B
GLY
187
n
136
GLY
187
B
TRP
188
n
137
TRP
188
B
ASP
189
n
138
ASP
189
B
THR
190
n
139
THR
190
B
PHE
191
n
140
PHE
191
B
VAL
192
n
141
VAL
192
B
GLU
193
n
142
GLU
193
B
LEU
194
n
143
LEU
194
B
TYR
195
n
144
TYR
195
B
GLY
196
n
145
GLY
196
B
ASN
197
n
146
ASN
197
B
ASN
198
n
147
ASN
198
B
ALA
199
n
148
ALA
199
B
ALA
200
n
149
ALA
200
B
ALA
201
n
150
ALA
201
B
GLU
202
n
151
GLU
202
B
SER
203
n
152
SER
203
B
n
153
204
B
n
154
205
B
n
155
206
B
n
156
207
B
n
157
208
B
n
158
209
B
1.1823
-0.7105
-1.2035
3.3944
3.6516
7.3685
-0.1446
0.0288
-0.0164
-0.0671
0.0028
-0.0122
0.0385
-0.2805
0.1398
0.1381
-0.0107
-0.0162
0.0659
0.0367
0.1227
refined
-2.0427
12.5416
-35.5281
X-RAY DIFFRACTION
2.6671
1.2796
1.9152
2.0868
1.3946
1.6528
0.0599
0.0469
-0.0646
-0.0013
0.0748
-0.1630
-0.0876
-0.0689
-0.1163
0.1607
0.0027
0.0274
0.0985
0.0133
0.0918
refined
-4.9083
-2.0636
-44.1158
X-RAY DIFFRACTION
7.0197
-3.5477
-5.9058
5.2104
3.3403
7.7056
-0.3010
0.1835
0.3277
-0.6092
0.1365
0.5772
0.2752
-0.6193
0.1522
0.2172
-0.0625
-0.0863
0.2311
-0.0270
0.2111
refined
-24.2542
-9.6849
-47.5117
X-RAY DIFFRACTION
3.8376
-4.4727
-1.9185
5.9071
2.0781
3.4662
-0.2033
-0.0672
-0.5969
-0.0720
0.1114
0.7556
0.2144
-0.4519
0.0702
0.1039
-0.0232
0.0020
0.1719
-0.0268
0.2458
refined
-26.1638
-10.7067
-34.1325
X-RAY DIFFRACTION
7.3717
1.4539
-5.4926
2.5132
-0.3985
4.5474
-0.3519
0.3124
-0.0635
-0.5579
0.5118
0.6653
0.4923
-0.0440
-0.0847
0.2507
-0.0160
-0.0596
0.1107
0.0264
0.2241
refined
-16.3724
-20.6532
-41.8338
X-RAY DIFFRACTION
0.3760
-1.2723
-0.3111
4.8589
0.6670
1.5002
-0.1228
0.0515
-0.1362
0.0293
0.0045
0.5090
-0.0282
-0.1028
0.1164
0.1230
0.0033
-0.0305
0.1083
0.0005
0.0498
refined
-18.7071
-5.2577
-40.8922
X-RAY DIFFRACTION
3.8531
-2.0587
-0.0743
5.7066
-0.0300
2.9064
-0.0003
0.0109
-0.1920
0.1618
0.0300
0.3838
0.0350
-0.0873
-0.0457
0.0813
-0.0231
0.0200
0.1118
-0.0099
0.0682
refined
-21.4636
-3.3899
-31.8128
X-RAY DIFFRACTION
8.5574
-4.6271
-1.2709
5.8144
-1.0351
4.2718
0.0722
-0.6844
0.5227
0.2257
-0.1292
-0.7773
0.2615
0.2885
-0.0097
0.1463
-0.0020
-0.0030
0.1308
0.0278
0.2058
refined
-6.0628
-17.3019
-33.7187
X-RAY DIFFRACTION
6.5875
-0.6451
2.6931
7.0267
1.6375
7.4137
-0.1310
0.3275
-0.2458
-0.1995
0.2199
-1.0033
-0.1888
0.6570
0.0583
0.1812
0.0021
0.0472
0.0705
-0.0175
0.2256
refined
-1.4180
-10.2131
-42.6974
X-RAY DIFFRACTION
2.2006
1.5947
-0.5622
2.0863
-0.1972
0.8734
0.0339
-0.0479
0.1042
0.0891
-0.1109
0.0563
-0.1601
0.0572
0.0480
0.1378
0.0015
0.0054
0.0810
-0.0091
0.0700
refined
-9.5897
8.8868
-41.4912
X-RAY DIFFRACTION
7.5060
-5.6387
6.8325
6.9407
-4.5044
8.8866
0.6572
0.3368
0.0787
-1.0786
-0.0952
-0.4503
0.2708
0.3152
-0.2646
0.3423
0.0086
0.0937
0.2738
0.0797
0.2636
refined
11.6327
21.7730
-49.1089
X-RAY DIFFRACTION
6.6556
-3.6752
2.2313
6.1885
-2.1729
3.6771
-0.0480
-0.1229
0.2367
-0.1888
-0.0197
-0.7889
-0.2765
0.4026
0.1065
0.1510
-0.0745
0.0374
0.1714
-0.0019
0.2021
refined
12.1551
24.3977
-37.2162
X-RAY DIFFRACTION
2.2510
-0.4039
-0.1686
4.2085
0.5600
2.2254
-0.0278
-0.0050
-0.0626
0.1047
-0.0044
-0.1049
0.0362
0.0723
0.0344
0.0786
-0.0206
-0.0009
0.0741
0.0367
0.0747
refined
5.2493
18.4347
-37.1700
X-RAY DIFFRACTION
6.5679
-0.1821
0.3516
2.9443
1.9607
2.6619
0.0656
0.7036
-0.1143
-0.6715
-0.2578
0.5956
-0.6074
-0.5352
0.1030
0.2611
0.0093
-0.0852
0.2418
0.0156
0.3191
refined
-13.4509
21.8689
-46.4194
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ -4:20)
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 21:100)
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 101:112)
X-RAY DIFFRACTION
4
CHAIN A AND (RESSEQ 113:131)
X-RAY DIFFRACTION
5
CHAIN A AND (RESSEQ 132:136)
X-RAY DIFFRACTION
6
CHAIN A AND (RESSEQ 137:156)
X-RAY DIFFRACTION
7
CHAIN A AND (RESSEQ 157:177)
X-RAY DIFFRACTION
8
CHAIN A AND (RESSEQ 178:186)
X-RAY DIFFRACTION
9
CHAIN A AND (RESSEQ 187:197)
X-RAY DIFFRACTION
10
CHAIN B AND (RESSEQ 4:100)
X-RAY DIFFRACTION
11
CHAIN B AND (RESSEQ 101:112)
X-RAY DIFFRACTION
12
CHAIN B AND (RESSEQ 113:136)
X-RAY DIFFRACTION
13
CHAIN B AND (RESSEQ 137:186)
X-RAY DIFFRACTION
14
CHAIN B AND (RESSEQ 187:203)
author_and_software_defined_assembly
PISA
2
dimeric
4940
-68.6
14560
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASN
198
A
ASN
147
1
Y
1
A
ALA
199
A
ALA
148
1
Y
1
A
ALA
200
A
ALA
149
1
Y
1
A
ALA
201
A
ALA
150
1
Y
1
A
GLU
202
A
GLU
151
1
Y
1
A
SER
203
A
SER
152
1
Y
1
A
ARG
204
A
ARG
153
1
Y
1
A
LYS
205
A
LYS
154
1
Y
1
A
GLY
206
A
GLY
155
1
Y
1
A
GLN
207
A
GLN
156
1
Y
1
A
GLU
208
A
GLU
157
1
Y
1
A
ARG
209
A
ARG
158
1
Y
1
B
GLY
-4
B
GLY
1
1
Y
1
B
PRO
-3
B
PRO
2
1
Y
1
B
LEU
-2
B
LEU
3
1
Y
1
B
GLY
-1
B
GLY
4
1
Y
1
B
SER
0
B
SER
5
1
Y
1
B
MET
1
B
MET
6
1
Y
1
B
SER
2
B
SER
7
1
Y
1
B
GLN
3
B
GLN
8
1
Y
1
B
ARG
204
B
ARG
153
1
Y
1
B
LYS
205
B
LYS
154
1
Y
1
B
GLY
206
B
GLY
155
1
Y
1
B
GLN
207
B
GLN
156
1
Y
1
B
GLU
208
B
GLU
157
1
Y
1
B
ARG
209
B
ARG
158
1
Y
1
A
A
O
O
HOH
HOH
2086
2129
2.14
1
B
B
O
O
HOH
HOH
2071
2076
2.16
1
B
B
OE2
O
GLU
HOH
7
2004
2.19
1
B
HIS
113
36.87
66.38
0.2080
0.1582
0.1606
2.026
44.001
1152
22506
5.1
97.15
0.19
1
2.02
MOLECULAR REPLACEMENT
16.54
0.90
1.10
PDB ENTRY 3ZK6 CHAIN A
ML
FLAT BULK SOLVENT MODEL
2.026
44.001
262
2697
105
0
2330
0.007
2501
1.196
3390
12.914
876
0.065
338
0.005
433
0.2334
0.2021
2.1185
132
2353
88.00
0.2288
0.1686
2.2302
147
2590
97.00
0.2360
0.1616
2.3699
160
2606
97.00
0.2409
0.1602
2.5529
132
2672
98.00
0.2099
0.1609
2.8097
164
2642
98.00
0.2243
0.1619
3.2162
127
2721
99.00
0.1770
0.1382
4.0516
146
2784
99.00
0.1838
0.1561
44.0118
144
2986
100.00
2.03
49.68
3ZLR
22506
-3.0
0.12
1
21.98
86.57
97.2
0.50
2.03
2.10
4.28
1
10.78
86.6
refinement
PHENIX
(PHENIX.REFINE: 1.8.1_1168)
data reduction
XDS
data scaling
XDS
phasing
PHASER
Crystal structure of BCL-XL in complex with inhibitor (WEHI-539)
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
2
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
GLY
-1
A
GLY
4
HELX_P
A
LYS
20
A
LYS
25
1
1
22
A
SER
25
A
SER
30
HELX_P
A
TYR
101
A
TYR
50
1
2
21
A
ARG
102
A
ARG
51
HELX_P
A
PHE
105
A
PHE
54
5
3
4
A
ASP
107
A
ASP
56
HELX_P
A
HIS
113
A
HIS
62
1
4
7
A
ALA
119
A
ALA
68
HELX_P
A
PHE
131
A
PHE
80
1
5
13
A
ASN
136
A
ASN
85
HELX_P
A
LYS
157
A
LYS
106
1
6
22
A
VAL
161
A
VAL
110
HELX_P
A
LEU
178
A
LEU
127
1
7
18
A
LEU
178
A
LEU
127
HELX_P
A
ASN
185
A
ASN
134
1
8
8
A
GLY
186
A
GLY
135
HELX_P
A
GLY
196
A
GLY
145
1
9
11
B
SER
4
B
SER
9
HELX_P
B
LYS
20
B
LYS
25
1
10
17
B
MET
83
B
MET
32
HELX_P
B
TYR
101
B
TYR
50
1
11
19
B
ARG
102
B
ARG
51
HELX_P
B
PHE
105
B
PHE
54
5
12
4
B
ASP
107
B
ASP
56
HELX_P
B
HIS
113
B
HIS
62
1
13
7
B
ALA
119
B
ALA
68
HELX_P
B
ASN
128
B
ASN
77
1
14
10
B
ASN
136
B
ASN
85
HELX_P
B
LYS
157
B
LYS
106
1
15
22
B
VAL
161
B
VAL
110
HELX_P
B
LEU
178
B
LEU
127
1
16
18
B
LEU
178
B
LEU
127
HELX_P
B
ASN
185
B
ASN
134
1
17
8
B
GLY
186
B
GLY
135
HELX_P
B
GLY
196
B
GLY
145
1
18
11
B
ASN
198
B
ASN
147
HELX_P
B
SER
203
B
SER
152
1
19
6
APOPTOSIS
APOPTOSIS, INHIBITOR
B2CL1_HUMAN
UNP
1
Q07817
1
26
3ZLR
1
26
Q07817
A
1
6
31
83
209
3ZLR
83
209
Q07817
A
1
32
158
1
26
3ZLR
1
26
Q07817
B
1
6
31
83
209
3ZLR
83
209
Q07817
B
1
32
158
1
expression tag
GLY
-4
3ZLR
A
Q07817
UNP
1
1
expression tag
PRO
-3
3ZLR
A
Q07817
UNP
2
1
expression tag
LEU
-2
3ZLR
A
Q07817
UNP
3
1
expression tag
GLY
-1
3ZLR
A
Q07817
UNP
4
1
expression tag
SER
0
3ZLR
A
Q07817
UNP
5
3
expression tag
GLY
-4
3ZLR
B
Q07817
UNP
1
3
expression tag
PRO
-3
3ZLR
B
Q07817
UNP
2
3
expression tag
LEU
-2
3ZLR
B
Q07817
UNP
3
3
expression tag
GLY
-1
3ZLR
B
Q07817
UNP
4
3
expression tag
SER
0
3ZLR
B
Q07817
UNP
5
BINDING SITE FOR RESIDUE X0B A 1198
A
X0B
1198
Software
23
BINDING SITE FOR RESIDUE EDO A 1199
A
EDO
1199
Software
4
BINDING SITE FOR RESIDUE EDO A 1200
A
EDO
1200
Software
7
BINDING SITE FOR RESIDUE SO4 A 1201
A
SO4
1201
Software
5
BINDING SITE FOR RESIDUE X0B B 1204
B
X0B
1204
Software
20
BINDING SITE FOR RESIDUE SO4 B 1205
B
SO4
1205
Software
6
BINDING SITE FOR RESIDUE SO4 B 1206
B
SO4
1206
Software
6
A
PHE
97
A
PHE
46
23
1_555
A
TYR
101
A
TYR
50
23
1_555
A
ARG
102
A
ARG
51
23
1_555
A
PHE
105
A
PHE
54
23
1_555
A
SER
106
A
SER
55
23
1_555
A
ASP
107
A
ASP
56
23
1_555
A
LEU
108
A
LEU
57
23
1_555
A
GLU
129
A
GLU
78
23
1_555
A
LEU
130
A
LEU
79
23
1_555
A
ARG
132
A
ARG
81
23
1_555
A
ASN
136
A
ASN
85
23
1_555
A
GLY
138
A
GLY
87
23
1_555
A
ARG
139
A
ARG
88
23
1_555
A
SER
145
A
SER
94
23
1_555
A
PHE
146
A
PHE
95
23
1_555
A
ALA
149
A
ALA
98
23
1_555
A
HOH
2074
J
HOH
23
1_555
A
HOH
2126
J
HOH
23
1_555
A
HOH
2128
J
HOH
23
1_555
A
HOH
2160
J
HOH
23
1_555
A
HOH
2161
J
HOH
23
1_555
B
ALA
199
B
ALA
148
23
6_554
B
SER
203
B
SER
152
23
6_554
A
PHE
131
A
PHE
80
4
1_555
A
VAL
135
A
VAL
84
4
1_555
A
TYR
173
A
TYR
122
4
1_555
A
HIS
177
A
HIS
126
4
1_555
A
TYR
15
A
TYR
20
7
6_554
A
HOH
2073
J
HOH
7
1_555
A
HOH
2074
J
HOH
7
1_555
A
HOH
2164
J
HOH
7
1_555
B
GLN
88
B
GLN
37
7
6_554
B
GLU
92
B
GLU
41
7
6_554
B
HOH
2029
K
HOH
7
6_554
A
ASN
136
A
ASN
85
5
1_555
A
TRP
137
A
TRP
86
5
1_555
A
GLY
138
A
GLY
87
5
1_555
A
TYR
195
A
TYR
144
5
1_555
A
HOH
2165
J
HOH
5
1_555
B
ALA
93
B
ALA
42
20
1_555
B
GLU
96
B
GLU
45
20
1_555
B
ARG
100
B
ARG
49
20
6_564
B
TYR
101
B
TYR
50
20
6_564
B
TYR
101
B
TYR
50
20
1_555
B
ARG
102
B
ARG
51
20
1_555
B
PHE
105
B
PHE
54
20
1_555
B
SER
106
B
SER
55
20
1_555
B
ASP
107
B
ASP
56
20
1_555
B
LEU
108
B
LEU
57
20
1_555
B
GLU
129
B
GLU
78
20
1_555
B
LEU
130
B
LEU
79
20
1_555
B
ASN
136
B
ASN
85
20
1_555
B
GLY
138
B
GLY
87
20
1_555
B
ARG
139
B
ARG
88
20
1_555
B
PHE
146
B
PHE
95
20
1_555
B
TYR
195
B
TYR
144
20
1_555
B
HOH
2036
K
HOH
20
6_564
B
HOH
2064
K
HOH
20
1_555
B
HOH
2094
K
HOH
20
1_555
B
ARG
100
B
ARG
49
6
6_564
B
ASN
136
B
ASN
85
6
1_555
B
TRP
137
B
TRP
86
6
1_555
B
GLY
138
B
GLY
87
6
1_555
B
TYR
195
B
TYR
144
6
1_555
B
HOH
2095
K
HOH
6
1_555
A
ASN
175
A
ASN
124
6
1_555
A
HOH
2020
J
HOH
6
8_554
B
SER
4
B
SER
9
6
1_555
B
ASN
5
B
ASN
10
6
1_555
B
ARG
6
B
ARG
11
6
1_555
B
HOH
2096
K
HOH
6
1_555
95
P 43 2 2