0.013699
0.000000
0.000000
0.000000
0.013699
0.000000
0.000000
0.000000
0.004964
0.00000
0.00000
0.00000
Dawson, A.
Trumper, P.
Chrysostomou, G.
Hunter, W.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
72.998
72.998
201.456
C10 H14 N5 O8 P
363.221
GUANOSINE-5'-MONOPHOSPHATE
non-polymer
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 As O2 -1
136.989
CACODYLATE ION
dimethylarsinate
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C2 O4 -2
88.019
OXALATE ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
N
18
N
C
N
19
N
O
N
20
N
N
N
21
N
C
N
22
N
N
N
23
N
N
Y
24
N
C
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
C
N
40
N
O
N
41
N
O
N
42
N
C
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
N
N
47
S
C
N
48
N
C
N
49
N
O
N
50
N
C
N
51
N
O
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
N
N
60
S
C
N
61
N
C
N
62
N
O
N
63
N
C
N
64
N
C
N
65
N
C
N
66
N
N
N
67
N
C
N
68
N
N
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
S
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
N
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
AS
N
120
N
O
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
CL
N
131
N
N
N
132
R
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
S
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
N
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
Y
199
N
C
Y
200
N
N
Y
201
N
C
Y
202
N
C
Y
203
N
N
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
S
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
N
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
S
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
O
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
S
N
368
N
O
N
369
N
O
N
370
N
O
N
371
N
O
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
R
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
N
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
N
427
N
O
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
ZN
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
N
30
N
sing
Y
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
Y
198
N
doub
N
199
N
sing
Y
200
N
sing
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
Y
309
N
doub
Y
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
DK
Acta Crystallogr.,Sect.F
1744-3091
69
611
10.1107/S174430911301292X
23722836
Structure of Diaminohydroxyphosphoribosylaminopyrimidine Deaminase/5-Amino-6-(5-Phosphoribosylamino)Uracil Reductase from Acinetobacter Baumannii.
2013
10.2210/pdb3zpg/pdb
pdb_00003zpg
5GP A 1367 HAS WRONG CHIRALITY AT ATOM C4'
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
2011-08-15
RIGAKU IMAGE PLATE
SI
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
42087.293
RIBD
3.5.4.26, 1.1.1.193
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
363.221
GUANOSINE-5'-MONOPHOSPHATE
2
syn
non-polymer
88.019
OXALATE ION
2
syn
non-polymer
136.989
CACODYLATE ION
1
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
59.044
ACETATE ION
1
syn
non-polymer
18.015
water
127
nat
water
no
no
MGSSHHHHHHSSGENLYFQGHMSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFA
LRQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLN
QGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIE
TVAQPKRVILDRRGRLPLTAKILENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEAGATLSSAF
LQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVIQLDQDIRLRLIPTQEKV
MGSSHHHHHHSSGENLYFQGHMSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFA
LRQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLN
QGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIE
TVAQPKRVILDRRGRLPLTAKILENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEAGATLSSAF
LQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVIQLDQDIRLRLIPTQEKV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
19606
470
ACINETOBACTER BAUMANNII
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET15BTEV
1
3.19
61.53
NONE
0.2 M AMMONIUM SULFATE, 0.125 M SODIUM CACODYLATE, 30% W/V POLYETHYLENE GLYCOL 8000
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-03-27
1
1
2013-06-12
1
2
2017-06-28
1
3
2023-12-20
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
ACINETOBACTER BAUMANNII RIBD, FORM 1
PDBE
Y
PDBE
2013-02-27
REL
REL
ZN
ZINC ION
SO4
SULFATE ION
5GP
GUANOSINE-5'-MONOPHOSPHATE
OXL
OXALATE ION
CAC
CACODYLATE ION
CL
CHLORIDE ION
ACT
ACETATE ION
HOH
water
3ZPC
PDB ENTRY 3ZPC
PDB
experimental model
ZN
1358
2
ZN
ZN
1358
A
SO4
1359
3
SO4
SO4
1359
A
SO4
1360
3
SO4
SO4
1360
A
5GP
1361
4
5GP
5GP
1361
A
OXL
1362
5
OXL
OXL
1362
A
OXL
1363
5
OXL
OXL
1363
A
CAC
1364
6
CAC
CAC
1364
A
CL
1365
7
CL
CL
1365
A
ACT
1366
8
ACT
ACT
1366
A
5GP
1367
4
5GP
5GP
1367
A
HOH
2001
9
HOH
HOH
2001
A
HOH
2002
9
HOH
HOH
2002
A
HOH
2003
9
HOH
HOH
2003
A
HOH
2004
9
HOH
HOH
2004
A
HOH
2005
9
HOH
HOH
2005
A
HOH
2006
9
HOH
HOH
2006
A
HOH
2007
9
HOH
HOH
2007
A
HOH
2008
9
HOH
HOH
2008
A
HOH
2009
9
HOH
HOH
2009
A
HOH
2010
9
HOH
HOH
2010
A
HOH
2011
9
HOH
HOH
2011
A
HOH
2012
9
HOH
HOH
2012
A
HOH
2013
9
HOH
HOH
2013
A
HOH
2014
9
HOH
HOH
2014
A
HOH
2015
9
HOH
HOH
2015
A
HOH
2016
9
HOH
HOH
2016
A
HOH
2017
9
HOH
HOH
2017
A
HOH
2018
9
HOH
HOH
2018
A
HOH
2019
9
HOH
HOH
2019
A
HOH
2020
9
HOH
HOH
2020
A
HOH
2021
9
HOH
HOH
2021
A
HOH
2022
9
HOH
HOH
2022
A
HOH
2023
9
HOH
HOH
2023
A
HOH
2024
9
HOH
HOH
2024
A
HOH
2025
9
HOH
HOH
2025
A
HOH
2026
9
HOH
HOH
2026
A
HOH
2027
9
HOH
HOH
2027
A
HOH
2028
9
HOH
HOH
2028
A
HOH
2029
9
HOH
HOH
2029
A
HOH
2030
9
HOH
HOH
2030
A
HOH
2031
9
HOH
HOH
2031
A
HOH
2032
9
HOH
HOH
2032
A
HOH
2033
9
HOH
HOH
2033
A
HOH
2034
9
HOH
HOH
2034
A
HOH
2035
9
HOH
HOH
2035
A
HOH
2036
9
HOH
HOH
2036
A
HOH
2037
9
HOH
HOH
2037
A
HOH
2038
9
HOH
HOH
2038
A
HOH
2039
9
HOH
HOH
2039
A
HOH
2040
9
HOH
HOH
2040
A
HOH
2041
9
HOH
HOH
2041
A
HOH
2042
9
HOH
HOH
2042
A
HOH
2043
9
HOH
HOH
2043
A
HOH
2044
9
HOH
HOH
2044
A
HOH
2045
9
HOH
HOH
2045
A
HOH
2046
9
HOH
HOH
2046
A
HOH
2047
9
HOH
HOH
2047
A
HOH
2048
9
HOH
HOH
2048
A
HOH
2049
9
HOH
HOH
2049
A
HOH
2050
9
HOH
HOH
2050
A
HOH
2051
9
HOH
HOH
2051
A
HOH
2052
9
HOH
HOH
2052
A
HOH
2053
9
HOH
HOH
2053
A
HOH
2054
9
HOH
HOH
2054
A
HOH
2055
9
HOH
HOH
2055
A
HOH
2056
9
HOH
HOH
2056
A
HOH
2057
9
HOH
HOH
2057
A
HOH
2058
9
HOH
HOH
2058
A
HOH
2059
9
HOH
HOH
2059
A
HOH
2060
9
HOH
HOH
2060
A
HOH
2061
9
HOH
HOH
2061
A
HOH
2062
9
HOH
HOH
2062
A
HOH
2063
9
HOH
HOH
2063
A
HOH
2064
9
HOH
HOH
2064
A
HOH
2065
9
HOH
HOH
2065
A
HOH
2066
9
HOH
HOH
2066
A
HOH
2067
9
HOH
HOH
2067
A
HOH
2068
9
HOH
HOH
2068
A
HOH
2069
9
HOH
HOH
2069
A
HOH
2070
9
HOH
HOH
2070
A
HOH
2071
9
HOH
HOH
2071
A
HOH
2072
9
HOH
HOH
2072
A
HOH
2073
9
HOH
HOH
2073
A
HOH
2074
9
HOH
HOH
2074
A
HOH
2075
9
HOH
HOH
2075
A
HOH
2076
9
HOH
HOH
2076
A
HOH
2077
9
HOH
HOH
2077
A
HOH
2078
9
HOH
HOH
2078
A
HOH
2079
9
HOH
HOH
2079
A
HOH
2080
9
HOH
HOH
2080
A
HOH
2081
9
HOH
HOH
2081
A
HOH
2082
9
HOH
HOH
2082
A
HOH
2083
9
HOH
HOH
2083
A
HOH
2084
9
HOH
HOH
2084
A
HOH
2085
9
HOH
HOH
2085
A
HOH
2086
9
HOH
HOH
2086
A
HOH
2087
9
HOH
HOH
2087
A
HOH
2088
9
HOH
HOH
2088
A
HOH
2089
9
HOH
HOH
2089
A
HOH
2090
9
HOH
HOH
2090
A
HOH
2091
9
HOH
HOH
2091
A
HOH
2092
9
HOH
HOH
2092
A
HOH
2093
9
HOH
HOH
2093
A
HOH
2094
9
HOH
HOH
2094
A
HOH
2095
9
HOH
HOH
2095
A
HOH
2096
9
HOH
HOH
2096
A
HOH
2097
9
HOH
HOH
2097
A
HOH
2098
9
HOH
HOH
2098
A
HOH
2099
9
HOH
HOH
2099
A
HOH
2100
9
HOH
HOH
2100
A
HOH
2101
9
HOH
HOH
2101
A
HOH
2102
9
HOH
HOH
2102
A
HOH
2103
9
HOH
HOH
2103
A
HOH
2104
9
HOH
HOH
2104
A
HOH
2105
9
HOH
HOH
2105
A
HOH
2106
9
HOH
HOH
2106
A
HOH
2107
9
HOH
HOH
2107
A
HOH
2108
9
HOH
HOH
2108
A
HOH
2109
9
HOH
HOH
2109
A
HOH
2110
9
HOH
HOH
2110
A
HOH
2111
9
HOH
HOH
2111
A
HOH
2112
9
HOH
HOH
2112
A
HOH
2113
9
HOH
HOH
2113
A
HOH
2114
9
HOH
HOH
2114
A
HOH
2115
9
HOH
HOH
2115
A
HOH
2116
9
HOH
HOH
2116
A
HOH
2117
9
HOH
HOH
2117
A
HOH
2118
9
HOH
HOH
2118
A
HOH
2119
9
HOH
HOH
2119
A
HOH
2120
9
HOH
HOH
2120
A
HOH
2121
9
HOH
HOH
2121
A
HOH
2122
9
HOH
HOH
2122
A
HOH
2123
9
HOH
HOH
2123
A
HOH
2124
9
HOH
HOH
2124
A
HOH
2125
9
HOH
HOH
2125
A
HOH
2126
9
HOH
HOH
2126
A
HOH
2127
9
HOH
HOH
2127
A
n
1
-20
A
n
2
-19
A
n
3
-18
A
n
4
-17
A
n
5
-16
A
n
6
-15
A
n
7
-14
A
n
8
-13
A
n
9
-12
A
n
10
-11
A
n
11
-10
A
n
12
-9
A
n
13
-8
A
n
14
-7
A
n
15
-6
A
n
16
-5
A
n
17
-4
A
n
18
-3
A
n
19
-2
A
n
20
-1
A
n
21
0
A
n
22
1
A
SER
2
n
23
SER
2
A
GLU
3
n
24
GLU
3
A
LEU
4
n
25
LEU
4
A
LYS
5
n
26
LYS
5
A
GLN
6
n
27
GLN
6
A
ASP
7
n
28
ASP
7
A
GLN
8
n
29
GLN
8
A
TYR
9
n
30
TYR
9
A
TRP
10
n
31
TRP
10
A
MET
11
n
32
MET
11
A
GLN
12
n
33
GLN
12
A
GLN
13
n
34
GLN
13
A
ALA
14
n
35
ALA
14
A
ILE
15
n
36
ILE
15
A
GLU
16
n
37
GLU
16
A
LEU
17
n
38
LEU
17
A
ALA
18
n
39
ALA
18
A
LYS
19
n
40
LYS
19
A
ARG
20
n
41
ARG
20
A
GLY
21
n
42
GLY
21
A
LEU
22
n
43
LEU
22
A
TYR
23
n
44
TYR
23
A
SER
24
n
45
SER
24
A
THR
25
n
46
THR
25
A
LYS
26
n
47
LYS
26
A
PRO
27
n
48
PRO
27
A
ASN
28
n
49
ASN
28
A
PRO
29
n
50
PRO
29
A
ASN
30
n
51
ASN
30
A
VAL
31
n
52
VAL
31
A
GLY
32
n
53
GLY
32
A
CYS
33
n
54
CYS
33
A
VAL
34
n
55
VAL
34
A
ILE
35
n
56
ILE
35
A
VAL
36
n
57
VAL
36
A
LYS
37
n
58
LYS
37
A
ASP
38
n
59
ASP
38
A
ASP
39
n
60
ASP
39
A
GLN
40
n
61
GLN
40
A
LEU
41
n
62
LEU
41
A
ILE
42
n
63
ILE
42
A
GLY
43
n
64
GLY
43
A
GLU
44
n
65
GLU
44
A
GLY
45
n
66
GLY
45
A
PHE
46
n
67
PHE
46
A
HIS
47
n
68
HIS
47
A
PRO
48
n
69
PRO
48
A
LYS
49
n
70
LYS
49
A
ALA
50
n
71
ALA
50
A
GLY
51
n
72
GLY
51
A
GLN
52
n
73
GLN
52
A
PRO
53
n
74
PRO
53
A
HIS
54
n
75
HIS
54
A
ALA
55
n
76
ALA
55
A
GLU
56
n
77
GLU
56
A
VAL
57
n
78
VAL
57
A
PHE
58
n
79
PHE
58
A
ALA
59
n
80
ALA
59
A
LEU
60
n
81
LEU
60
A
ARG
61
n
82
ARG
61
A
GLN
62
n
83
GLN
62
A
ALA
63
n
84
ALA
63
A
GLY
64
n
85
GLY
64
A
GLU
65
n
86
GLU
65
A
GLN
66
n
87
GLN
66
A
ALA
67
n
88
ALA
67
A
GLN
68
n
89
GLN
68
A
GLY
69
n
90
GLY
69
A
ALA
70
n
91
ALA
70
A
THR
71
n
92
THR
71
A
ALA
72
n
93
ALA
72
A
TYR
73
n
94
TYR
73
A
VAL
74
n
95
VAL
74
A
THR
75
n
96
THR
75
A
LEU
76
n
97
LEU
76
A
GLU
77
n
98
GLU
77
A
PRO
78
n
99
PRO
78
A
CYS
79
n
100
CYS
79
A
ALA
80
n
101
ALA
80
A
HIS
81
n
102
HIS
81
A
TYR
82
n
103
TYR
82
A
GLY
83
n
104
GLY
83
A
ARG
84
n
105
ARG
84
A
THR
85
n
106
THR
85
A
PRO
86
n
107
PRO
86
A
PRO
87
n
108
PRO
87
A
CYS
88
n
109
CYS
88
A
ALA
89
n
110
ALA
89
A
GLU
90
n
111
GLU
90
A
ALA
91
n
112
ALA
91
A
LEU
92
n
113
LEU
92
A
VAL
93
n
114
VAL
93
A
LYS
94
n
115
LYS
94
A
ALA
95
n
116
ALA
95
A
GLN
96
n
117
GLN
96
A
VAL
97
n
118
VAL
97
A
LYS
98
n
119
LYS
98
A
LYS
99
n
120
LYS
99
A
VAL
100
n
121
VAL
100
A
VAL
101
n
122
VAL
101
A
VAL
102
n
123
VAL
102
A
ALA
103
n
124
ALA
103
A
CYS
104
n
125
CYS
104
A
PRO
105
n
126
PRO
105
A
ASP
106
n
127
ASP
106
A
PRO
107
n
128
PRO
107
A
ASN
108
n
129
ASN
108
A
PRO
109
n
130
PRO
109
A
LEU
110
n
131
LEU
110
A
VAL
111
n
132
VAL
111
A
ALA
112
n
133
ALA
112
A
GLY
113
n
134
GLY
113
A
LYS
114
n
135
LYS
114
A
GLY
115
n
136
GLY
115
A
VAL
116
n
137
VAL
116
A
GLN
117
n
138
GLN
117
A
ILE
118
n
139
ILE
118
A
LEU
119
n
140
LEU
119
A
LYS
120
n
141
LYS
120
A
ASN
121
n
142
ASN
121
A
ALA
122
n
143
ALA
122
A
GLY
123
n
144
GLY
123
A
ILE
124
n
145
ILE
124
A
GLU
125
n
146
GLU
125
A
VAL
126
n
147
VAL
126
A
GLU
127
n
148
GLU
127
A
ILE
128
n
149
ILE
128
A
GLY
129
n
150
GLY
129
A
ILE
130
n
151
ILE
130
A
CYS
131
n
152
CYS
131
A
GLU
132
n
153
GLU
132
A
ASP
133
n
154
ASP
133
A
LEU
134
n
155
LEU
134
A
ALA
135
n
156
ALA
135
A
ALA
136
n
157
ALA
136
A
LYS
137
n
158
LYS
137
A
LEU
138
n
159
LEU
138
A
ASN
139
n
160
ASN
139
A
GLN
140
n
161
GLN
140
A
GLY
141
n
162
GLY
141
A
PHE
142
n
163
PHE
142
A
LEU
143
n
164
LEU
143
A
LYS
144
n
165
LYS
144
A
ALA
145
n
166
ALA
145
A
MET
146
n
167
MET
146
A
SER
147
n
168
SER
147
A
THR
148
n
169
THR
148
A
GLY
149
n
170
GLY
149
A
MET
150
n
171
MET
150
A
PRO
151
n
172
PRO
151
A
TYR
152
n
173
TYR
152
A
VAL
153
n
174
VAL
153
A
ARG
154
n
175
ARG
154
A
LEU
155
n
176
LEU
155
A
LYS
156
n
177
LYS
156
A
VAL
157
n
178
VAL
157
A
ALA
158
n
179
ALA
158
A
SER
159
n
180
SER
159
A
SER
160
n
181
SER
160
A
LEU
161
n
182
LEU
161
A
ASP
162
n
183
ASP
162
A
GLY
163
n
184
GLY
163
A
ARG
164
n
185
ARG
164
A
THR
165
n
186
THR
165
A
ALA
166
n
187
ALA
166
A
MET
167
n
188
MET
167
A
ALA
168
n
189
ALA
168
A
SER
169
n
190
SER
169
A
GLY
170
n
191
GLY
170
A
GLU
171
n
192
GLU
171
A
SER
172
n
193
SER
172
A
n
194
173
A
n
195
174
A
ILE
175
n
196
ILE
175
A
THR
176
n
197
THR
176
A
GLY
177
n
198
GLY
177
A
SER
178
n
199
SER
178
A
ALA
179
n
200
ALA
179
A
ALA
180
n
201
ALA
180
A
ARG
181
n
202
ARG
181
A
GLN
182
n
203
GLN
182
A
ASP
183
n
204
ASP
183
A
VAL
184
n
205
VAL
184
A
GLN
185
n
206
GLN
185
A
HIS
186
n
207
HIS
186
A
TRP
187
n
208
TRP
187
A
ARG
188
n
209
ARG
188
A
ALA
189
n
210
ALA
189
A
ILE
190
n
211
ILE
190
A
SER
191
n
212
SER
191
A
GLY
192
n
213
GLY
192
A
ALA
193
n
214
ALA
193
A
VAL
194
n
215
VAL
194
A
ILE
195
n
216
ILE
195
A
THR
196
n
217
THR
196
A
GLY
197
n
218
GLY
197
A
ILE
198
n
219
ILE
198
A
ASP
199
n
220
ASP
199
A
THR
200
n
221
THR
200
A
VAL
201
n
222
VAL
201
A
ILE
202
n
223
ILE
202
A
ALA
203
n
224
ALA
203
A
ASP
204
n
225
ASP
204
A
ASP
205
n
226
ASP
205
A
CYS
206
n
227
CYS
206
A
GLN
207
n
228
GLN
207
A
LEU
208
n
229
LEU
208
A
ASN
209
n
230
ASN
209
A
VAL
210
n
231
VAL
210
A
ARG
211
n
232
ARG
211
A
SER
212
n
233
SER
212
A
LEU
213
n
234
LEU
213
A
HIS
214
n
235
HIS
214
A
ASN
215
n
236
ASN
215
A
ILE
216
n
237
ILE
216
A
ASP
217
n
238
ASP
217
A
ILE
218
n
239
ILE
218
A
GLU
219
n
240
GLU
219
A
THR
220
n
241
THR
220
A
VAL
221
n
242
VAL
221
A
ALA
222
n
243
ALA
222
A
GLN
223
n
244
GLN
223
A
PRO
224
n
245
PRO
224
A
LYS
225
n
246
LYS
225
A
ARG
226
n
247
ARG
226
A
VAL
227
n
248
VAL
227
A
ILE
228
n
249
ILE
228
A
LEU
229
n
250
LEU
229
A
ASP
230
n
251
ASP
230
A
ARG
231
n
252
ARG
231
A
ARG
232
n
253
ARG
232
A
GLY
233
n
254
GLY
233
A
ARG
234
n
255
ARG
234
A
LEU
235
n
256
LEU
235
A
PRO
236
n
257
PRO
236
A
LEU
237
n
258
LEU
237
A
THR
238
n
259
THR
238
A
ALA
239
n
260
ALA
239
A
LYS
240
n
261
LYS
240
A
ILE
241
n
262
ILE
241
A
LEU
242
n
263
LEU
242
A
GLU
243
n
264
GLU
243
A
ASN
244
n
265
ASN
244
A
PRO
245
n
266
PRO
245
A
GLU
246
n
267
GLU
246
A
THR
247
n
268
THR
247
A
VAL
248
n
269
VAL
248
A
MET
249
n
270
MET
249
A
VAL
250
n
271
VAL
250
A
MET
251
n
272
MET
251
A
GLY
252
n
273
GLY
252
A
PRO
253
n
274
PRO
253
A
TYR
254
n
275
TYR
254
A
ARG
255
n
276
ARG
255
A
GLN
256
n
277
GLN
256
A
GLU
257
n
278
GLU
257
A
LEU
258
n
279
LEU
258
A
ALA
259
n
280
ALA
259
A
ASP
260
n
281
ASP
260
A
LEU
261
n
282
LEU
261
A
GLY
262
n
283
GLY
262
A
VAL
263
n
284
VAL
263
A
ILE
264
n
285
ILE
264
A
GLN
265
n
286
GLN
265
A
LEU
266
n
287
LEU
266
A
GLU
267
n
288
GLU
267
A
ILE
268
n
289
ILE
268
A
GLN
269
n
290
GLN
269
A
PRO
270
n
291
PRO
270
A
LEU
271
n
292
LEU
271
A
LYS
272
n
293
LYS
272
A
THR
273
n
294
THR
273
A
LEU
274
n
295
LEU
274
A
LEU
275
n
296
LEU
275
A
GLN
276
n
297
GLN
276
A
THR
277
n
298
THR
277
A
LEU
278
n
299
LEU
278
A
SER
279
n
300
SER
279
A
LYS
280
n
301
LYS
280
A
GLN
281
n
302
GLN
281
A
TYR
282
n
303
TYR
282
A
GLN
283
n
304
GLN
283
A
ILE
284
n
305
ILE
284
A
TYR
285
n
306
TYR
285
A
ASP
286
n
307
ASP
286
A
VAL
287
n
308
VAL
287
A
LEU
288
n
309
LEU
288
A
ILE
289
n
310
ILE
289
A
GLU
290
n
311
GLU
290
A
ALA
291
n
312
ALA
291
A
GLY
292
n
313
GLY
292
A
ALA
293
n
314
ALA
293
A
THR
294
n
315
THR
294
A
LEU
295
n
316
LEU
295
A
SER
296
n
317
SER
296
A
SER
297
n
318
SER
297
A
ALA
298
n
319
ALA
298
A
PHE
299
n
320
PHE
299
A
LEU
300
n
321
LEU
300
A
GLN
301
n
322
GLN
301
A
GLU
302
n
323
GLU
302
A
GLY
303
n
324
GLY
303
A
LEU
304
n
325
LEU
304
A
ILE
305
n
326
ILE
305
A
ASP
306
n
327
ASP
306
A
GLU
307
n
328
GLU
307
A
MET
308
n
329
MET
308
A
ILE
309
n
330
ILE
309
A
SER
310
n
331
SER
310
A
TYR
311
n
332
TYR
311
A
VAL
312
n
333
VAL
312
A
ALA
313
n
334
ALA
313
A
PRO
314
n
335
PRO
314
A
THR
315
n
336
THR
315
A
LEU
316
n
337
LEU
316
A
LEU
317
n
338
LEU
317
A
GLY
318
n
339
GLY
318
A
GLN
319
n
340
GLN
319
A
SER
320
n
341
SER
320
A
ALA
321
n
342
ALA
321
A
ARG
322
n
343
ARG
322
A
ALA
323
n
344
ALA
323
A
MET
324
n
345
MET
324
A
PHE
325
n
346
PHE
325
A
ASN
326
n
347
ASN
326
A
ALA
327
n
348
ALA
327
A
ASP
328
n
349
ASP
328
A
PHE
329
n
350
PHE
329
A
GLU
330
n
351
GLU
330
A
TYR
331
n
352
TYR
331
A
MET
332
n
353
MET
332
A
ALA
333
n
354
ALA
333
A
GLN
334
n
355
GLN
334
A
GLN
335
n
356
GLN
335
A
LEU
336
n
357
LEU
336
A
ARG
337
n
358
ARG
337
A
PHE
338
n
359
PHE
338
A
LYS
339
n
360
LYS
339
A
LEU
340
n
361
LEU
340
A
LEU
341
n
362
LEU
341
A
ASP
342
n
363
ASP
342
A
VAL
343
n
364
VAL
343
A
ILE
344
n
365
ILE
344
A
GLN
345
n
366
GLN
345
A
LEU
346
n
367
LEU
346
A
ASP
347
n
368
ASP
347
A
GLN
348
n
369
GLN
348
A
ASP
349
n
370
ASP
349
A
ILE
350
n
371
ILE
350
A
ARG
351
n
372
ARG
351
A
LEU
352
n
373
LEU
352
A
ARG
353
n
374
ARG
353
A
LEU
354
n
375
LEU
354
A
ILE
355
n
376
ILE
355
A
PRO
356
n
377
PRO
356
A
THR
357
n
378
THR
357
A
n
379
358
A
n
380
359
A
n
381
360
A
n
382
361
A
6.0001
1.8534
-1.3706
4.3068
-1.1084
1.3729
-0.0627
-0.1290
-0.0524
-0.4601
-0.0525
-0.9207
-0.0491
0.5083
0.1152
0.3186
-0.0778
0.3081
0.2526
-0.0064
0.5364
refined
13.5950
-14.1200
-24.5650
X-RAY DIFFRACTION
0.9920
0.0868
-0.0368
1.6806
0.4525
1.3184
-0.1354
-0.0137
-0.1464
-0.4035
0.0120
-0.2312
0.0458
0.0895
0.1234
0.2647
0.0271
0.1173
0.0300
0.0140
0.2273
refined
-9.7760
-25.7200
-17.7070
X-RAY DIFFRACTION
A
2
A
88
X-RAY DIFFRACTION
1
A
89
A
357
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
9310
-177.5
30680
A
HIS
54
A
ND1
HIS
75
1_555
A
ZN
1358
B
ZN
ZN
1_555
A
CYS
79
A
SG
CYS
100
1_555
103.3
A
HIS
54
A
ND1
HIS
75
1_555
A
ZN
1358
B
ZN
ZN
1_555
A
CYS
88
A
SG
CYS
109
1_555
101.6
A
CYS
79
A
SG
CYS
100
1_555
A
ZN
1358
B
ZN
ZN
1_555
A
CYS
88
A
SG
CYS
109
1_555
112.0
A
HIS
54
A
ND1
HIS
75
1_555
A
ZN
1358
B
ZN
ZN
1_555
A
CAC
1364
H
O1
CAC
1_555
132.7
A
CYS
79
A
SG
CYS
100
1_555
A
ZN
1358
B
ZN
ZN
1_555
A
CAC
1364
H
O1
CAC
1_555
96.8
A
CYS
88
A
SG
CYS
109
1_555
A
ZN
1358
B
ZN
ZN
1_555
A
CAC
1364
H
O1
CAC
1_555
109.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
45
A
N
GLY
66
A
O
CYS
33
A
O
CYS
54
A
N
VAL
36
A
N
VAL
57
A
O
THR
71
A
O
THR
92
A
N
ALA
72
A
N
ALA
93
A
O
LYS
99
A
O
LYS
120
A
N
VAL
100
A
N
VAL
121
A
O
GLU
125
A
O
GLU
146
A
N
ILE
264
A
N
ILE
285
A
O
VAL
248
A
O
VAL
269
A
N
MET
249
A
N
MET
270
A
O
ARG
226
A
O
ARG
247
A
N
VAL
227
A
N
VAL
248
A
O
VAL
194
A
O
VAL
215
A
N
ILE
195
A
N
ILE
216
A
O
LEU
288
A
O
LEU
309
A
N
VAL
287
A
N
VAL
308
A
O
TYR
152
A
O
TYR
173
A
N
LEU
155
A
N
LEU
176
A
O
GLU
307
A
O
GLU
328
A
N
VAL
312
A
N
VAL
333
A
O
ILE
350
A
O
ILE
371
A
N
ILE
355
A
N
ILE
376
A
O
LYS
339
A
O
LYS
360
1
A
MET
-20
A
MET
1
1
Y
1
A
GLY
-19
A
GLY
2
1
Y
1
A
SER
-18
A
SER
3
1
Y
1
A
SER
-17
A
SER
4
1
Y
1
A
HIS
-16
A
HIS
5
1
Y
1
A
HIS
-15
A
HIS
6
1
Y
1
A
HIS
-14
A
HIS
7
1
Y
1
A
HIS
-13
A
HIS
8
1
Y
1
A
HIS
-12
A
HIS
9
1
Y
1
A
HIS
-11
A
HIS
10
1
Y
1
A
SER
-10
A
SER
11
1
Y
1
A
SER
-9
A
SER
12
1
Y
1
A
GLY
-8
A
GLY
13
1
Y
1
A
GLU
-7
A
GLU
14
1
Y
1
A
ASN
-6
A
ASN
15
1
Y
1
A
LEU
-5
A
LEU
16
1
Y
1
A
TYR
-4
A
TYR
17
1
Y
1
A
PHE
-3
A
PHE
18
1
Y
1
A
GLN
-2
A
GLN
19
1
Y
1
A
GLY
-1
A
GLY
20
1
Y
1
A
HIS
0
A
HIS
21
1
Y
1
A
MET
1
A
MET
22
1
Y
1
A
LYS
173
A
LYS
194
1
Y
1
A
TRP
174
A
TRP
195
1
Y
1
A
GLN
358
A
GLN
379
1
Y
1
A
GLU
359
A
GLU
380
1
Y
1
A
LYS
360
A
LYS
381
1
Y
1
A
VAL
361
A
VAL
382
1
Y
1
A
C4'
5GP
1367
WRONG HAND
1
A
A
O2
O
OXL
HOH
1363
2088
2.02
1
14.58
2.30
115.30
129.88
A
A
A
CA
CB
CG
LEU
LEU
LEU
138
138
138
N
1
A
LYS
49
-174.94
148.39
1
A
ASN
139
-146.44
47.66
1
A
ASN
244
-117.50
70.24
1
A
ASP
347
59.47
-105.05
44.915
0.52
0.00
0.00
0.52
0.00
-1.05
0.947
0.941
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.23671
0.21393
0.21508
1.99
68.63
1897
36017
5.0
99.40
7.342
0.106
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.152
0.138
0.80
0.80
1.40
PDB ENTRY 3ZPC
MAXIMUM LIKELIHOOD
MASK
1.99
68.63
127
2922
81
0
2714
0.010
0.022
2874
1.288
2.011
3908
5.631
5.000
356
43.652
24.918
122
14.411
15.000
507
20.453
15.000
19
0.077
0.200
455
0.005
0.021
2122
0.597
1.500
1775
1.109
2.000
2865
1.770
3.000
1099
2.808
4.500
1041
0.324
0.294
2.046
128
2455
20
93.82
1.99
51.62
3ZPG
38040
0.0
0.06
1
24.70
13.3
99.5
0.62
1.99
2.10
4.10
1
12
97.0
refinement
REFMAC
5.5.0109
data reduction
XDS
data scaling
SCALA
phasing
PHASER
Acinetobacter baumannii RibD, form 2
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
8
N
N
4
N
N
9
N
N
A
SER
2
A
SER
23
HELX_P
A
LYS
19
A
LYS
40
1
1
18
A
ARG
20
A
ARG
41
HELX_P
A
LEU
22
A
LEU
43
5
2
3
A
HIS
54
A
HIS
75
HELX_P
A
GLY
64
A
GLY
85
1
3
11
A
GLU
65
A
GLU
86
HELX_P
A
GLN
68
A
GLN
89
5
4
4
A
PRO
87
A
PRO
108
HELX_P
A
ALA
95
A
ALA
116
1
5
9
A
GLY
113
A
GLY
134
HELX_P
A
ALA
122
A
ALA
143
1
6
10
A
CYS
131
A
CYS
152
HELX_P
A
LYS
137
A
LYS
158
1
7
7
A
ASN
139
A
ASN
160
HELX_P
A
GLY
149
A
GLY
170
1
8
11
A
GLY
177
A
GLY
198
HELX_P
A
ILE
190
A
ILE
211
1
9
14
A
ILE
198
A
ILE
219
HELX_P
A
ASP
205
A
ASP
226
1
10
8
A
ASP
217
A
ASP
238
HELX_P
A
VAL
221
A
VAL
242
5
11
5
A
ALA
239
A
ALA
260
HELX_P
A
GLU
243
A
GLU
264
5
12
5
A
ASN
244
A
ASN
265
HELX_P
A
GLU
246
A
GLU
267
5
13
3
A
ARG
255
A
ARG
276
HELX_P
A
LEU
261
A
LEU
282
1
14
7
A
PRO
270
A
PRO
291
HELX_P
A
GLN
283
A
GLN
304
1
15
14
A
GLY
292
A
GLY
313
HELX_P
A
GLU
302
A
GLU
323
1
16
11
A
TYR
331
A
TYR
352
HELX_P
A
GLN
335
A
GLN
356
5
17
5
metalc
2.037
A
HIS
54
A
ND1
HIS
75
1_555
A
ZN
1358
B
ZN
ZN
1_555
metalc
2.398
A
CYS
79
A
SG
CYS
100
1_555
A
ZN
1358
B
ZN
ZN
1_555
metalc
2.412
A
CYS
88
A
SG
CYS
109
1_555
A
ZN
1358
B
ZN
ZN
1_555
metalc
2.005
A
ZN
1358
B
ZN
ZN
1_555
A
CAC
1364
H
O1
CAC
1_555
HYDROLASE
REDUCTASE, DEAMINASE, HYDROLASE
A
LYS
26
A
LYS
47
1
A
PRO
27
A
PRO
48
7.28
D0CB74_ACIBA
UNP
1
D0CB74
1
361
3ZPG
1
361
D0CB74
A
1
22
382
1
expression tag
MET
-20
3ZPG
A
D0CB74
UNP
1
1
expression tag
GLY
-19
3ZPG
A
D0CB74
UNP
2
1
expression tag
SER
-18
3ZPG
A
D0CB74
UNP
3
1
expression tag
SER
-17
3ZPG
A
D0CB74
UNP
4
1
expression tag
HIS
-16
3ZPG
A
D0CB74
UNP
5
1
expression tag
HIS
-15
3ZPG
A
D0CB74
UNP
6
1
expression tag
HIS
-14
3ZPG
A
D0CB74
UNP
7
1
expression tag
HIS
-13
3ZPG
A
D0CB74
UNP
8
1
expression tag
HIS
-12
3ZPG
A
D0CB74
UNP
9
1
expression tag
HIS
-11
3ZPG
A
D0CB74
UNP
10
1
expression tag
SER
-10
3ZPG
A
D0CB74
UNP
11
1
expression tag
SER
-9
3ZPG
A
D0CB74
UNP
12
1
expression tag
GLY
-8
3ZPG
A
D0CB74
UNP
13
1
expression tag
GLU
-7
3ZPG
A
D0CB74
UNP
14
1
expression tag
ASN
-6
3ZPG
A
D0CB74
UNP
15
1
expression tag
LEU
-5
3ZPG
A
D0CB74
UNP
16
1
expression tag
TYR
-4
3ZPG
A
D0CB74
UNP
17
1
expression tag
PHE
-3
3ZPG
A
D0CB74
UNP
18
1
expression tag
GLN
-2
3ZPG
A
D0CB74
UNP
19
1
expression tag
GLY
-1
3ZPG
A
D0CB74
UNP
20
1
expression tag
HIS
0
3ZPG
A
D0CB74
UNP
21
5
9
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
GLN
40
A
GLN
61
A
PHE
46
A
PHE
67
A
GLY
32
A
GLY
53
A
LYS
37
A
LYS
58
A
THR
71
A
THR
92
A
LEU
76
A
LEU
97
A
LYS
99
A
LYS
120
A
CYS
104
A
CYS
125
A
GLU
125
A
GLU
146
A
ILE
128
A
ILE
149
A
ILE
264
A
ILE
285
A
LEU
266
A
LEU
287
A
VAL
248
A
VAL
269
A
MET
251
A
MET
272
A
LYS
225
A
LYS
246
A
LEU
229
A
LEU
250
A
ALA
193
A
ALA
214
A
GLY
197
A
GLY
218
A
ASP
286
A
ASP
307
A
GLU
290
A
GLU
311
A
TYR
152
A
TYR
173
A
SER
160
A
SER
181
A
GLU
307
A
GLU
328
A
ALA
313
A
ALA
334
A
ASP
349
A
ASP
370
A
PRO
356
A
PRO
377
A
PHE
338
A
PHE
359
A
LEU
346
A
LEU
367
BINDING SITE FOR RESIDUE ZN A 1358
A
ZN
1358
Software
4
BINDING SITE FOR RESIDUE SO4 A 1359
A
SO4
1359
Software
5
BINDING SITE FOR RESIDUE SO4 A 1360
A
SO4
1360
Software
4
BINDING SITE FOR RESIDUE 5GP A 1361
A
5GP
1361
Software
13
BINDING SITE FOR RESIDUE OXL A 1362
A
OXL
1362
Software
4
BINDING SITE FOR RESIDUE OXL A 1363
A
OXL
1363
Software
6
BINDING SITE FOR RESIDUE CAC A 1364
A
CAC
1364
Software
9
BINDING SITE FOR RESIDUE CL A 1365
A
CL
1365
Software
4
BINDING SITE FOR RESIDUE ACT A 1366
A
ACT
1366
Software
6
BINDING SITE FOR RESIDUE 5GP A 1367
A
5GP
1367
Software
6
A
HIS
54
A
HIS
75
4
1_555
A
CYS
79
A
CYS
100
4
1_555
A
CYS
88
A
CYS
109
4
1_555
A
CAC
1364
H
CAC
4
1_555
A
ARG
188
A
ARG
209
5
1_555
A
CYS
206
A
CYS
227
5
1_555
A
GLN
207
A
GLN
228
5
1_555
A
LEU
208
A
LEU
229
5
1_555
A
ARG
211
A
ARG
232
5
1_555
A
HIS
54
A
HIS
75
4
1_555
A
GLY
83
A
GLY
104
4
1_555
A
ARG
84
A
ARG
105
4
1_555
A
THR
85
A
THR
106
4
1_555
A
LEU
229
A
LEU
250
13
1_555
A
ARG
231
A
ARG
252
13
1_555
A
MET
251
A
MET
272
13
1_555
A
PRO
270
A
PRO
291
13
1_555
A
LEU
271
A
LEU
292
13
1_555
A
ALA
298
A
ALA
319
13
1_555
A
GLU
302
A
GLU
323
13
1_555
A
HOH
2087
L
HOH
13
1_555
A
HOH
2101
L
HOH
13
1_555
A
HOH
2102
L
HOH
13
1_555
A
HOH
2123
L
HOH
13
1_555
A
HOH
2124
L
HOH
13
1_555
A
HOH
2125
L
HOH
13
1_555
A
PHE
46
A
PHE
67
4
1_555
A
PRO
48
A
PRO
69
4
1_555
A
PHE
58
A
PHE
79
4
1_555
A
HOH
2126
L
HOH
4
1_555
A
ILE
198
A
ILE
219
6
1_555
A
LEU
229
A
LEU
250
6
1_555
A
ARG
231
A
ARG
252
6
1_555
A
ARG
232
A
ARG
253
6
1_555
A
ARG
234
A
ARG
255
6
1_555
A
HOH
2088
L
HOH
6
1_555
A
HIS
54
A
HIS
75
9
1_555
A
GLU
56
A
GLU
77
9
1_555
A
LEU
76
A
LEU
97
9
1_555
A
GLU
77
A
GLU
98
9
1_555
A
PRO
78
A
PRO
99
9
1_555
A
CYS
79
A
CYS
100
9
1_555
A
CYS
88
A
CYS
109
9
1_555
A
ZN
1358
B
ZN
9
1_555
A
HOH
2023
L
HOH
9
1_555
A
GLY
197
A
GLY
218
4
1_555
A
THR
200
A
THR
221
4
1_555
A
GLY
292
A
GLY
313
4
1_555
A
HOH
2107
L
HOH
4
1_555
A
LYS
137
A
LYS
158
6
1_555
A
LEU
138
A
LEU
159
6
1_555
A
ASN
139
A
ASN
160
6
1_555
A
GLN
140
A
GLN
161
6
1_555
A
ARG
154
A
ARG
175
6
1_555
A
ASP
286
A
ASP
307
6
1_555
A
LYS
137
A
LYS
158
6
1_555
A
ASP
183
A
ASP
204
6
1_555
A
HIS
186
A
HIS
207
6
1_555
A
ARG
351
A
ARG
372
6
1_555
A
ARG
353
A
ARG
374
6
1_555
A
HOH
2127
L
HOH
6
1_555
96
P 43 21 2