0.017289 0.000000 0.000000 0.000000 0.011636 0.000000 0.000000 0.000000 0.021608 0.00000 0.00000 0.00000 Joshi, A. Veron, J.B. Unge, J. Rosenquist, A. Wallberg, H. Samuelsson, B. Hallberg, A. Larhed, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.840 85.940 46.280 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C36 H52 Br N5 O6 730.732 methyl N-[(2S)-1-[2-[(4-bromophenyl)methyl]-2-[(4R)-5-[[(2S)-3,3-dimethyl-1-oxidanylidene-1-(prop-2-enylamino)butan-2-yl]amino]-4-oxidanyl-5-oxidanylidene-4-(phenylmethyl)pentyl]hydrazinyl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Med.Chem. JMCMAR 0151 0022-2623 56 8999 10.1021/JM400811D 24160253 Design and Synthesis of P1-P3 Macrocyclic Tertiary Alcohol Comprising HIV-1 Protease Inhibitors. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRRORS CCD 2011-04-19 MARRESEARCH SX-165 DCM SINGLE WAVELENGTH M x-ray 1 1.0 1.0 I911-2 MAX II 1.0 SYNCHROTRON MAX II BEAMLINE I911-2 INHIBITOR COMPLEX 10775.659 PROTEASE 3.4.23.16 2 man polymer 35.453 CHLORIDE ION 3 syn non-polymer 730.732 methyl N-[(2S)-1-[2-[(4-bromophenyl)methyl]-2-[(4R)-5-[[(2S)-3,3-dimethyl-1-oxidanylidene-1-(prop-2-enylamino)butan-2-yl]amino]-4-oxidanyl-5-oxidanylidene-4-(phenylmethyl)pentyl]hydrazinyl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate 1 syn non-polymer 18.015 water 281 nat water PR, RETROPEPSIN no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT PTNVIGRNLLTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT PTNVIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n D10 sample 11676 HUMAN IMMUNODEFICIENCY VIRUS 1 511693 ESCHERICHIA COLI BL21 ROSETTA PET11D PLASMID 1 2.67 53.91 NONE diffrn_source repository Initial release Database references Data collection 1 0 2013-11-06 1 1 2013-12-11 1 2 2018-01-17 _diffrn_source.pdbx_synchrotron_site DESIGN AND SYNTHESIS OF P1-P3 MACROCYCLIC TERTIARY ALCOHOL COMPRISING HIV-1 PROTEASE INHIBITORS DESIGN AND SYNTHESIS OF P1-P3 MACROCYCLIC TERTIARY ALCOHOL COMPRISING HIV-1 PROTEASE INHIBITORS SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. PDBE Y PDBE 2013-03-01 REL 1 A O HOH 2116 5.81 1 B O HOH 2001 6.27 1 B O HOH 2017 6.03 1 B O HOH 2125 9.55 1 B O HOH 2126 9.84 1 B O HOH 2127 7.06 CL CHLORIDE ION EQM methyl N-[(2S)-1-[2-[(4-bromophenyl)methyl]-2-[(4R)-5-[[(2S)-3,3-dimethyl-1-oxidanylidene-1-(prop-2-enylamino)butan-2-yl]amino]-4-oxidanyl-5-oxidanylidene-4-(phenylmethyl)pentyl]hydrazinyl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate HOH water CL 1100 2 CL CL 1100 A CL 1200 2 CL CL 1200 B CL 1201 2 CL CL 1201 B EQM 1202 3 EQM EQM 1202 B HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2108 4 HOH HOH 2108 A HOH 2109 4 HOH HOH 2109 A HOH 2110 4 HOH HOH 2110 A HOH 2111 4 HOH HOH 2111 A HOH 2112 4 HOH HOH 2112 A HOH 2113 4 HOH HOH 2113 A HOH 2114 4 HOH HOH 2114 A HOH 2115 4 HOH HOH 2115 A HOH 2116 4 HOH HOH 2116 A HOH 2117 4 HOH HOH 2117 A HOH 2118 4 HOH HOH 2118 A HOH 2119 4 HOH HOH 2119 A HOH 2120 4 HOH HOH 2120 A HOH 2121 4 HOH HOH 2121 A HOH 2122 4 HOH HOH 2122 A HOH 2123 4 HOH HOH 2123 A HOH 2124 4 HOH HOH 2124 A HOH 2125 4 HOH HOH 2125 A HOH 2126 4 HOH HOH 2126 A HOH 2127 4 HOH HOH 2127 A HOH 2128 4 HOH HOH 2128 A HOH 2129 4 HOH HOH 2129 A HOH 2130 4 HOH HOH 2130 A HOH 2131 4 HOH HOH 2131 A HOH 2132 4 HOH HOH 2132 A HOH 2133 4 HOH HOH 2133 A HOH 2134 4 HOH HOH 2134 A HOH 2135 4 HOH HOH 2135 A HOH 2136 4 HOH HOH 2136 A HOH 2137 4 HOH HOH 2137 A HOH 2138 4 HOH HOH 2138 A HOH 2139 4 HOH HOH 2139 A HOH 2140 4 HOH HOH 2140 A HOH 2141 4 HOH HOH 2141 A HOH 2142 4 HOH HOH 2142 A HOH 2143 4 HOH HOH 2143 A HOH 2144 4 HOH HOH 2144 A HOH 2145 4 HOH HOH 2145 A HOH 2146 4 HOH HOH 2146 A HOH 2147 4 HOH HOH 2147 A HOH 2148 4 HOH HOH 2148 A HOH 2149 4 HOH HOH 2149 A HOH 2150 4 HOH HOH 2150 A HOH 2151 4 HOH HOH 2151 A HOH 2152 4 HOH HOH 2152 A HOH 2153 4 HOH HOH 2153 A HOH 2154 4 HOH HOH 2154 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B HOH 2013 4 HOH HOH 2013 B HOH 2014 4 HOH HOH 2014 B HOH 2015 4 HOH HOH 2015 B HOH 2016 4 HOH HOH 2016 B HOH 2017 4 HOH HOH 2017 B HOH 2018 4 HOH HOH 2018 B HOH 2019 4 HOH HOH 2019 B HOH 2020 4 HOH HOH 2020 B HOH 2021 4 HOH HOH 2021 B HOH 2022 4 HOH HOH 2022 B HOH 2023 4 HOH HOH 2023 B HOH 2024 4 HOH HOH 2024 B HOH 2025 4 HOH HOH 2025 B HOH 2026 4 HOH HOH 2026 B HOH 2027 4 HOH HOH 2027 B HOH 2028 4 HOH HOH 2028 B HOH 2029 4 HOH HOH 2029 B HOH 2030 4 HOH HOH 2030 B HOH 2031 4 HOH HOH 2031 B HOH 2032 4 HOH HOH 2032 B HOH 2033 4 HOH HOH 2033 B HOH 2034 4 HOH HOH 2034 B HOH 2035 4 HOH HOH 2035 B HOH 2036 4 HOH HOH 2036 B HOH 2037 4 HOH HOH 2037 B HOH 2038 4 HOH HOH 2038 B HOH 2039 4 HOH HOH 2039 B HOH 2040 4 HOH HOH 2040 B HOH 2041 4 HOH HOH 2041 B HOH 2042 4 HOH HOH 2042 B HOH 2043 4 HOH HOH 2043 B HOH 2044 4 HOH HOH 2044 B HOH 2045 4 HOH HOH 2045 B HOH 2046 4 HOH HOH 2046 B HOH 2047 4 HOH HOH 2047 B HOH 2048 4 HOH HOH 2048 B HOH 2049 4 HOH HOH 2049 B HOH 2050 4 HOH HOH 2050 B HOH 2051 4 HOH HOH 2051 B HOH 2052 4 HOH HOH 2052 B HOH 2053 4 HOH HOH 2053 B HOH 2054 4 HOH HOH 2054 B HOH 2055 4 HOH HOH 2055 B HOH 2056 4 HOH HOH 2056 B HOH 2057 4 HOH HOH 2057 B HOH 2058 4 HOH HOH 2058 B HOH 2059 4 HOH HOH 2059 B HOH 2060 4 HOH HOH 2060 B HOH 2061 4 HOH HOH 2061 B HOH 2062 4 HOH HOH 2062 B HOH 2063 4 HOH HOH 2063 B HOH 2064 4 HOH HOH 2064 B HOH 2065 4 HOH HOH 2065 B HOH 2066 4 HOH HOH 2066 B HOH 2067 4 HOH HOH 2067 B HOH 2068 4 HOH HOH 2068 B HOH 2069 4 HOH HOH 2069 B HOH 2070 4 HOH HOH 2070 B HOH 2071 4 HOH HOH 2071 B HOH 2072 4 HOH HOH 2072 B HOH 2073 4 HOH HOH 2073 B HOH 2074 4 HOH HOH 2074 B HOH 2075 4 HOH HOH 2075 B HOH 2076 4 HOH HOH 2076 B HOH 2077 4 HOH HOH 2077 B HOH 2078 4 HOH HOH 2078 B HOH 2079 4 HOH HOH 2079 B HOH 2080 4 HOH HOH 2080 B HOH 2081 4 HOH HOH 2081 B HOH 2082 4 HOH HOH 2082 B HOH 2083 4 HOH HOH 2083 B HOH 2084 4 HOH HOH 2084 B HOH 2085 4 HOH HOH 2085 B HOH 2086 4 HOH HOH 2086 B HOH 2087 4 HOH HOH 2087 B HOH 2088 4 HOH HOH 2088 B HOH 2089 4 HOH HOH 2089 B HOH 2090 4 HOH HOH 2090 B HOH 2091 4 HOH HOH 2091 B HOH 2092 4 HOH HOH 2092 B HOH 2093 4 HOH HOH 2093 B HOH 2094 4 HOH HOH 2094 B HOH 2095 4 HOH HOH 2095 B HOH 2096 4 HOH HOH 2096 B HOH 2097 4 HOH HOH 2097 B HOH 2098 4 HOH HOH 2098 B HOH 2099 4 HOH HOH 2099 B HOH 2100 4 HOH HOH 2100 B HOH 2101 4 HOH HOH 2101 B HOH 2102 4 HOH HOH 2102 B HOH 2103 4 HOH HOH 2103 B HOH 2104 4 HOH HOH 2104 B HOH 2105 4 HOH HOH 2105 B HOH 2106 4 HOH HOH 2106 B HOH 2107 4 HOH HOH 2107 B HOH 2108 4 HOH HOH 2108 B HOH 2109 4 HOH HOH 2109 B HOH 2110 4 HOH HOH 2110 B HOH 2111 4 HOH HOH 2111 B HOH 2112 4 HOH HOH 2112 B HOH 2113 4 HOH HOH 2113 B HOH 2114 4 HOH HOH 2114 B HOH 2115 4 HOH HOH 2115 B HOH 2116 4 HOH HOH 2116 B HOH 2117 4 HOH HOH 2117 B HOH 2118 4 HOH HOH 2118 B HOH 2119 4 HOH HOH 2119 B HOH 2120 4 HOH HOH 2120 B HOH 2121 4 HOH HOH 2121 B HOH 2122 4 HOH HOH 2122 B HOH 2123 4 HOH HOH 2123 B HOH 2124 4 HOH HOH 2124 B HOH 2125 4 HOH HOH 2125 B HOH 2126 4 HOH HOH 2126 B HOH 2127 4 HOH HOH 2127 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A PRO 63 n 63 PRO 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A THR 82 n 82 THR 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 101 n 1 PRO 101 B GLN 102 n 2 GLN 102 B ILE 103 n 3 ILE 103 B THR 104 n 4 THR 104 B LEU 105 n 5 LEU 105 B TRP 106 n 6 TRP 106 B GLN 107 n 7 GLN 107 B ARG 108 n 8 ARG 108 B PRO 109 n 9 PRO 109 B LEU 110 n 10 LEU 110 B VAL 111 n 11 VAL 111 B THR 112 n 12 THR 112 B ILE 113 n 13 ILE 113 B LYS 114 n 14 LYS 114 B ILE 115 n 15 ILE 115 B GLY 116 n 16 GLY 116 B GLY 117 n 17 GLY 117 B GLN 118 n 18 GLN 118 B LEU 119 n 19 LEU 119 B LYS 120 n 20 LYS 120 B GLU 121 n 21 GLU 121 B ALA 122 n 22 ALA 122 B LEU 123 n 23 LEU 123 B LEU 124 n 24 LEU 124 B ASP 125 n 25 ASP 125 B THR 126 n 26 THR 126 B GLY 127 n 27 GLY 127 B ALA 128 n 28 ALA 128 B ASP 129 n 29 ASP 129 B ASP 130 n 30 ASP 130 B THR 131 n 31 THR 131 B VAL 132 n 32 VAL 132 B LEU 133 n 33 LEU 133 B GLU 134 n 34 GLU 134 B GLU 135 n 35 GLU 135 B MET 136 n 36 MET 136 B SER 137 n 37 SER 137 B LEU 138 n 38 LEU 138 B PRO 139 n 39 PRO 139 B GLY 140 n 40 GLY 140 B ARG 141 n 41 ARG 141 B TRP 142 n 42 TRP 142 B LYS 143 n 43 LYS 143 B PRO 144 n 44 PRO 144 B LYS 145 n 45 LYS 145 B MET 146 n 46 MET 146 B ILE 147 n 47 ILE 147 B GLY 148 n 48 GLY 148 B GLY 149 n 49 GLY 149 B ILE 150 n 50 ILE 150 B GLY 151 n 51 GLY 151 B GLY 152 n 52 GLY 152 B PHE 153 n 53 PHE 153 B ILE 154 n 54 ILE 154 B LYS 155 n 55 LYS 155 B VAL 156 n 56 VAL 156 B ARG 157 n 57 ARG 157 B GLN 158 n 58 GLN 158 B TYR 159 n 59 TYR 159 B ASP 160 n 60 ASP 160 B GLN 161 n 61 GLN 161 B ILE 162 n 62 ILE 162 B PRO 163 n 63 PRO 163 B ILE 164 n 64 ILE 164 B GLU 165 n 65 GLU 165 B ILE 166 n 66 ILE 166 B CYS 167 n 67 CYS 167 B GLY 168 n 68 GLY 168 B HIS 169 n 69 HIS 169 B LYS 170 n 70 LYS 170 B ALA 171 n 71 ALA 171 B ILE 172 n 72 ILE 172 B GLY 173 n 73 GLY 173 B THR 174 n 74 THR 174 B VAL 175 n 75 VAL 175 B LEU 176 n 76 LEU 176 B VAL 177 n 77 VAL 177 B GLY 178 n 78 GLY 178 B PRO 179 n 79 PRO 179 B THR 180 n 80 THR 180 B PRO 181 n 81 PRO 181 B THR 182 n 82 THR 182 B ASN 183 n 83 ASN 183 B VAL 184 n 84 VAL 184 B ILE 185 n 85 ILE 185 B GLY 186 n 86 GLY 186 B ARG 187 n 87 ARG 187 B ASN 188 n 88 ASN 188 B LEU 189 n 89 LEU 189 B LEU 190 n 90 LEU 190 B THR 191 n 91 THR 191 B GLN 192 n 92 GLN 192 B ILE 193 n 93 ILE 193 B GLY 194 n 94 GLY 194 B CYS 195 n 95 CYS 195 B THR 196 n 96 THR 196 B LEU 197 n 97 LEU 197 B ASN 198 n 98 ASN 198 B PHE 199 n 99 PHE 199 B author_and_software_defined_assembly PISA 2 dimeric 4340 -47.5 9340 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 197 B O LEU 97 B N ASN 198 B N ASN 98 A O THR 96 A O THR 96 A N LEU 97 A N LEU 97 B O ILE 103 B O ILE 3 A N ILE 15 A N ILE 15 A O GLN 18 A O GLN 18 A O LEU 23 A O LEU 23 A N ILE 85 A N ILE 85 A N VAL 84 A N VAL 84 A O VAL 32 A O VAL 32 A N LEU 33 A N LEU 33 A O LEU 76 A O LEU 76 A N VAL 77 A N VAL 77 A O ARG 57 A O ARG 57 B N ILE 115 B N ILE 15 B O GLN 118 B O GLN 18 B O LEU 123 B O LEU 23 B N ILE 185 B N ILE 85 B N VAL 184 B N VAL 84 B O VAL 132 B O VAL 32 B N LEU 133 B N LEU 33 B O LEU 176 B O LEU 76 B N VAL 177 B N VAL 77 B O ARG 157 B O ARG 57 1 B B O O HOH HOH 2105 2106 0.59 1 A A CG2 O THR HOH 4 2030 1.56 1 A B CD2 O LEU HOH 97 2119 1.61 1 B B O O HOH HOH 2010 2054 1.66 1 A B O O HOH HOH 2006 2120 1.69 1 A A NE O ARG HOH 41 2088 1.71 1 A A O O HOH HOH 2057 2081 1.74 1 B B O O HOH HOH 2091 2093 1.74 1 B B O O HOH HOH 2121 2123 1.79 1 A A O O HOH HOH 2119 2135 1.84 1 B B O O HOH HOH 2022 2023 1.84 1 B B O O HOH HOH 2031 2032 1.86 1 A A O O HOH HOH 2111 2113 1.91 1 A B O O HOH HOH 2020 2117 1.98 1 A B O O HOH HOH 2149 2025 1.99 1 B B O O HOH HOH 2122 2123 2.03 1 A B O O HOH HOH 2138 2033 2.03 1 A A O O HOH HOH 2003 2004 2.06 1 B B O O HOH HOH 2032 2121 2.07 1 A A O O HOH HOH 2023 2024 2.08 1 B B O O HOH HOH 2030 2038 2.08 1 A A CE O LYS HOH 14 2048 2.12 1 A A O O HOH HOH 2015 2024 2.15 1 A A O O HOH HOH 2136 2140 2.15 1 A A O O HOH HOH 2020 2021 2.16 1 B B O O HOH HOH 2076 2080 2.18 1 A A O O HOH HOH 2014 2016 2.19 1 A A O O HOH HOH 2016 2145 2.19 1 A B O O HOH HOH 2037 2111 0.73 1_555 4_555 1 A A O O HOH HOH 2002 2005 1.51 1_555 2_665 1 A A O O HOH HOH 2002 2004 2.06 1_555 2_665 1 A B O O HOH HOH 2137 2016 2.12 1_555 3_555 1 A B O O HOH HOH 2134 2016 2.13 1_555 3_555 1 A B O O HOH HOH 2010 2019 2.19 1_555 4_555 15.602 0.25 0.00 0.00 -0.17 0.00 -0.08 0.950 0.936 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.21029 0.18699 0.18819 1.55 28.92 1740 32288 5.1 99.09 1.174 0.044 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.081 0.080 0.80 0.80 1.40 HIV-1 PROTEASE MAXIMUM LIKELIHOOD MASK 1.55 28.92 281 1844 51 0 1512 0.006 0.022 1596 0.899 2.018 2170 6.781 5.000 196 39.466 24.815 54 12.817 15.000 281 22.271 15.000 8 0.076 0.200 258 0.021 0.021 1147 1.679 1.500 980 2.828 2.000 1600 4.917 3.000 616 7.347 4.500 570 0.233 0.243 1.588 134 2283 20 97.54 1.55 28.90 3ZPS 34063 2.0 0.07 1 6.30 4.3 99.3 0.19 1.55 1.63 6.10 1 3.9 98.5 refinement REFMAC 5.5.0109 data reduction MOSFLM data scaling SCALA phasing REFMAC PROTEASE (E.C.3.4.23.16) Design and Synthesis of P1-P3 Macrocyclic Tertiary Alcohol Comprising HIV-1 Protease Inhibitors 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 B GLY 186 B GLY 86 HELX_P B THR 191 B THR 91 1 2 6 HYDROLASE HYDROLASE, PROTEASE INHIBITOR, RATIONAL DRUG DESIGN POL_HV1B1 UNP 1 P03366 501 599 3ZPS 1 99 P03366 A 1 1 99 501 599 3ZPS 101 199 P03366 B 1 1 99 1 LEU conflict PRO 63 3ZPS A P03366 UNP 563 63 1 VAL conflict THR 82 3ZPS A P03366 UNP 582 82 1 ILE conflict VAL 84 3ZPS A P03366 UNP 584 84 2 LEU conflict PRO 163 3ZPS B P03366 UNP 563 63 2 VAL conflict THR 182 3ZPS B P03366 UNP 582 82 2 ILE conflict VAL 184 3ZPS B P03366 UNP 584 84 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 196 B THR 96 B ASN 198 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 102 B GLN 2 B ILE 103 B ILE 3 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A VAL 84 A VAL 84 A ILE 85 A ILE 85 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LEU 10 A LEU 10 A ILE 15 A ILE 15 B LEU 110 B LEU 10 B ILE 115 B ILE 15 B GLN 118 B GLN 18 B LEU 124 B LEU 24 B VAL 184 B VAL 84 B ILE 185 B ILE 85 B VAL 132 B VAL 32 B LEU 133 B LEU 33 B HIS 169 B HIS 69 B VAL 177 B VAL 77 B GLY 152 B GLY 52 B ILE 166 B ILE 66 B LEU 110 B LEU 10 B ILE 115 B ILE 15 BINDING SITE FOR RESIDUE CL B 1200 Software 2 BINDING SITE FOR RESIDUE CL A 1100 Software 4 BINDING SITE FOR RESIDUE CL B 1201 Software 3 BINDING SITE FOR RESIDUE EQM B 1202 Software 18 B TRP 106 B TRP 6 2 1_555 B HOH 2095 H HOH 2 3_555 A THR 74 A THR 74 4 1_555 A ASN 88 A ASN 88 4 1_555 A HOH 2045 G HOH 4 1_555 B ARG 141 B ARG 41 4 3_555 B THR 174 B THR 74 3 1_555 B ASN 188 B ASN 88 3 1_555 B HOH 2113 H HOH 3 1_555 A ARG 8 A ARG 8 18 1_555 A ASP 25 A ASP 25 18 1_555 A GLY 27 A GLY 27 18 1_555 A ALA 28 A ALA 28 18 1_555 A ASP 29 A ASP 29 18 1_555 A ILE 47 A ILE 47 18 1_555 A GLY 48 A GLY 48 18 1_555 A GLY 49 A GLY 49 18 1_555 A HOH 2098 G HOH 18 1_555 B LEU 123 B LEU 23 18 1_555 B ASP 125 B ASP 25 18 1_555 B GLY 127 B GLY 27 18 1_555 B ALA 128 B ALA 28 18 1_555 B ASP 129 B ASP 29 18 1_555 B GLY 148 B GLY 48 18 1_555 B GLY 149 B GLY 49 18 1_555 B ILE 150 B ILE 50 18 1_555 B HOH 2088 H HOH 18 1_555 18 P 21 21 2