data_3F8O # _entry.id 3F8O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F8O pdb_00003f8o 10.2210/pdb3f8o/pdb NDB ZD0026 ? ? RCSB RCSB050285 ? ? WWPDB D_1000050285 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-12-27 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3F8O _pdbx_database_status.recvd_initial_deposition_date 2008-11-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Venkadesh, S.' 2 'Gautham, N.' 3 # _citation.id primary _citation.title 'Crystal structures of d(CACGCG).d(CGCGTG) grown with different metal ions' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Venkadesh, S.' 2 ? primary 'Gautham, N.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DCP*DAP*DCP*DGP*DCP*DG)-3') ; 1794.206 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DCP*DGP*DCP*DGP*DTP*DG)-3') ; 1825.216 1 ? ? ? ? 3 water nat water 18.015 27 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DG)(DC)(DG)' CACGCG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DT)(DG)' CGCGTG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DT n 2 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 2 1 DC 1 7 7 DC C B . n B 2 2 DG 2 8 8 DG G B . n B 2 3 DC 3 9 9 DC C B . n B 2 4 DG 4 10 10 DG G B . n B 2 5 DT 5 11 11 DT T B . n B 2 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 7 5 HOH HOH A . C 3 HOH 2 8 6 HOH HOH A . C 3 HOH 3 17 17 HOH HOH A . C 3 HOH 4 19 19 HOH HOH A . C 3 HOH 5 23 23 HOH HOH A . C 3 HOH 6 24 24 HOH HOH A . C 3 HOH 7 25 25 HOH HOH A . C 3 HOH 8 26 26 HOH HOH A . C 3 HOH 9 27 27 HOH HOH A . D 3 HOH 1 1 1 HOH HOH B . D 3 HOH 2 2 2 HOH HOH B . D 3 HOH 3 3 3 HOH HOH B . D 3 HOH 4 4 4 HOH HOH B . D 3 HOH 5 13 13 HOH HOH B . D 3 HOH 6 14 14 HOH HOH B . D 3 HOH 7 15 15 HOH HOH B . D 3 HOH 8 16 16 HOH HOH B . D 3 HOH 9 17 7 HOH HOH B . D 3 HOH 10 18 18 HOH HOH B . D 3 HOH 11 19 8 HOH HOH B . D 3 HOH 12 20 20 HOH HOH B . D 3 HOH 13 21 21 HOH HOH B . D 3 HOH 14 22 22 HOH HOH B . D 3 HOH 15 23 9 HOH HOH B . D 3 HOH 16 24 10 HOH HOH B . D 3 HOH 17 25 11 HOH HOH B . D 3 HOH 18 26 12 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 AUTOMAR 'data reduction' . ? 4 # _cell.entry_id 3F8O _cell.length_a 17.785 _cell.length_b 30.941 _cell.length_c 44.789 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F8O _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3F8O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.702381 _exptl_crystal.density_percent_sol 27.748251 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details '50mM Sodium Cacodylate, 0.1mM PdCl2, 1.0mM spermine, 40% (v/v) MPD, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 PdCl2 ? ? ? 1 4 1 spermine ? ? ? 1 5 1 H2O ? ? ? 1 6 2 MPD ? ? ? 1 7 2 'sodium cacodylate' ? ? ? 1 8 2 PdCl2 ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2008-05-05 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3F8O _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.50 _reflns.d_resolution_high 1.72 _reflns.number_obs 2809 _reflns.number_all 2822 _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value 0.04820 _reflns.pdbx_netI_over_sigmaI 5.7 _reflns.B_iso_Wilson_estimate 28 _reflns.pdbx_redundancy 4.27 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.72 _reflns_shell.d_res_low 1.78 _reflns_shell.percent_possible_all 96.2 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value 0.2904 _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 4.24 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 279 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3F8O _refine.ls_number_reflns_obs 2682 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.46 _refine.ls_d_res_high 1.72 _refine.ls_percent_reflns_obs 97.40 _refine.ls_R_factor_obs 0.21906 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21804 _refine.ls_R_factor_R_free 0.23992 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 127 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 15.632 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Fiber model of Z-DNA built using insightII' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.159 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.087 _refine.overall_SU_B 2.910 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 246 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 273 _refine_hist.d_res_high 1.72 _refine_hist.d_res_low 25.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 276 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.039 3.000 ? 426 'X-RAY DIFFRACTION' ? r_chiral_restr 0.077 0.200 ? 48 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 125 'X-RAY DIFFRACTION' ? r_nbd_refined 0.175 0.200 ? 80 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.277 0.200 ? 154 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.203 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.196 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.048 0.200 ? 3 'X-RAY DIFFRACTION' ? r_scbond_it 1.894 3.000 ? 402 'X-RAY DIFFRACTION' ? r_scangle_it 2.262 4.500 ? 424 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.720 _refine_ls_shell.d_res_low 1.764 _refine_ls_shell.number_reflns_R_work 182 _refine_ls_shell.R_factor_R_work 0.334 _refine_ls_shell.percent_reflns_obs 94.97 _refine_ls_shell.R_factor_R_free 0.433 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 182 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3F8O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3F8O _struct.title 'Structure of d(CACGCG).d(CGCGTG) with low concentration of PdCl2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3F8O _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA double helix, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3F8O 3F8O 1 1 CACGCG ? 2 PDB 3F8O 3F8O 2 7 CGCGTG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3F8O A 1 ? 6 ? 3F8O 1 ? 6 ? 1 6 2 2 3F8O B 1 ? 6 ? 3F8O 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 650 ? 1 MORE -5 ? 1 'SSA (A^2)' 2340 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.09 108.30 3.79 0.30 N 2 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DA 2 ? ? 127.85 119.70 8.15 1.20 Y 3 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 122.90 119.90 3.00 0.50 N 4 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.89 108.30 3.59 0.30 N 5 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.19 108.30 1.89 0.30 N 6 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 124.68 128.60 -3.92 0.60 N 7 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 111.30 108.30 3.00 0.30 N 8 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 103.47 108.00 -4.53 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 3F8O _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.268 -0.005 -0.207 5.323 -1.784 -1.271 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DA 2 1_555 B DT 5 1_555 0.271 -0.072 0.210 -6.606 -2.834 1.976 2 A_DA2:DT11_B A 2 ? B 11 ? 20 1 1 A DC 3 1_555 B DG 4 1_555 -0.253 -0.058 0.057 6.509 4.596 1.134 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.298 -0.073 0.107 0.473 -1.085 1.390 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.372 -0.140 -0.158 9.166 0.483 1.671 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.408 -0.128 0.176 -3.783 3.730 2.012 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DA 2 1_555 B DT 5 1_555 -0.096 5.599 3.815 -2.394 -3.744 -11.752 -19.256 -4.485 5.215 17.488 -11.181 -12.561 1 AA_DC1DA2:DT11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DA 2 1_555 B DT 5 1_555 A DC 3 1_555 B DG 4 1_555 0.338 -0.980 3.172 0.125 -1.716 -50.689 1.261 0.403 3.138 2.003 0.146 -50.716 2 AA_DA2DC3:DG10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.136 5.321 3.738 -1.003 -2.832 -8.664 -24.467 -3.975 5.158 18.046 -6.393 -9.170 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 0.064 -1.056 3.210 1.682 -6.372 -49.420 1.700 0.194 3.057 7.582 2.001 -49.831 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.054 5.395 3.765 -0.949 -0.954 -6.203 -43.059 -5.150 4.498 8.681 -8.635 -6.347 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name InsightII _pdbx_initial_refinement_model.details 'Fiber model of Z-DNA built using insightII' # _atom_sites.entry_id 3F8O _atom_sites.fract_transf_matrix[1][1] 0.056227 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032320 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022327 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? -1.670 -3.327 15.426 1.00 18.40 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -1.097 -3.968 14.318 1.00 15.81 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 0.379 -3.587 14.181 1.00 15.17 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 0.537 -2.238 13.649 1.00 13.62 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 1.253 -3.707 15.445 1.00 13.19 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 2.495 -4.238 15.081 1.00 12.98 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 1.504 -2.260 15.847 1.00 14.14 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 1.481 -1.547 14.470 1.00 14.10 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 1.145 -0.107 14.617 1.00 13.91 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 2.171 0.831 14.875 1.00 13.18 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 3.313 0.409 14.964 1.00 12.58 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 1.853 2.153 15.032 1.00 11.08 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 0.581 2.535 14.934 1.00 11.35 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 0.276 3.813 15.087 1.00 12.72 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -0.461 1.615 14.651 1.00 15.30 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -0.141 0.316 14.506 1.00 13.85 ? 1 DC A C6 1 ATOM 17 P P . DA A 1 2 ? 2.933 -5.757 15.063 1.00 14.08 ? 2 DA A P 1 ATOM 18 O OP1 . DA A 1 2 ? 2.311 -6.399 16.225 1.00 15.86 ? 2 DA A OP1 1 ATOM 19 O OP2 . DA A 1 2 ? 4.362 -5.821 14.852 1.00 16.65 ? 2 DA A OP2 1 ATOM 20 O "O5'" . DA A 1 2 ? 2.246 -6.411 13.791 1.00 13.62 ? 2 DA A "O5'" 1 ATOM 21 C "C5'" . DA A 1 2 ? 2.698 -6.129 12.470 1.00 14.18 ? 2 DA A "C5'" 1 ATOM 22 C "C4'" . DA A 1 2 ? 1.739 -6.690 11.459 1.00 14.44 ? 2 DA A "C4'" 1 ATOM 23 O "O4'" . DA A 1 2 ? 0.390 -6.230 11.683 1.00 13.24 ? 2 DA A "O4'" 1 ATOM 24 C "C3'" . DA A 1 2 ? 2.093 -6.355 10.019 1.00 15.15 ? 2 DA A "C3'" 1 ATOM 25 O "O3'" . DA A 1 2 ? 2.815 -7.491 9.516 1.00 18.98 ? 2 DA A "O3'" 1 ATOM 26 C "C2'" . DA A 1 2 ? 0.746 -6.176 9.325 1.00 14.48 ? 2 DA A "C2'" 1 ATOM 27 C "C1'" . DA A 1 2 ? -0.261 -5.978 10.458 1.00 15.33 ? 2 DA A "C1'" 1 ATOM 28 N N9 . DA A 1 2 ? -0.810 -4.628 10.536 1.00 16.30 ? 2 DA A N9 1 ATOM 29 C C8 . DA A 1 2 ? -2.122 -4.318 10.578 1.00 17.74 ? 2 DA A C8 1 ATOM 30 N N7 . DA A 1 2 ? -2.380 -3.038 10.662 1.00 18.93 ? 2 DA A N7 1 ATOM 31 C C5 . DA A 1 2 ? -1.129 -2.460 10.671 1.00 18.43 ? 2 DA A C5 1 ATOM 32 C C6 . DA A 1 2 ? -0.709 -1.120 10.756 1.00 20.07 ? 2 DA A C6 1 ATOM 33 N N6 . DA A 1 2 ? -1.585 -0.110 10.841 1.00 20.24 ? 2 DA A N6 1 ATOM 34 N N1 . DA A 1 2 ? 0.631 -0.879 10.747 1.00 17.01 ? 2 DA A N1 1 ATOM 35 C C2 . DA A 1 2 ? 1.499 -1.894 10.667 1.00 17.22 ? 2 DA A C2 1 ATOM 36 N N3 . DA A 1 2 ? 1.196 -3.188 10.586 1.00 15.30 ? 2 DA A N3 1 ATOM 37 C C4 . DA A 1 2 ? -0.137 -3.414 10.589 1.00 16.05 ? 2 DA A C4 1 ATOM 38 P P A DC A 1 3 ? 4.401 -7.427 9.304 0.50 17.78 ? 3 DC A P 1 ATOM 39 P P B DC A 1 3 ? 3.418 -7.543 8.032 0.50 15.70 ? 3 DC A P 1 ATOM 40 O OP1 A DC A 1 3 ? 4.877 -8.720 8.766 0.50 19.57 ? 3 DC A OP1 1 ATOM 41 O OP1 B DC A 1 3 ? 2.365 -7.210 7.059 0.50 17.65 ? 3 DC A OP1 1 ATOM 42 O OP2 A DC A 1 3 ? 5.049 -6.914 10.546 0.50 18.00 ? 3 DC A OP2 1 ATOM 43 O OP2 B DC A 1 3 ? 4.120 -8.814 7.822 0.50 15.37 ? 3 DC A OP2 1 ATOM 44 O "O5'" . DC A 1 3 ? 4.460 -6.340 8.127 1.00 16.51 ? 3 DC A "O5'" 1 ATOM 45 C "C5'" . DC A 1 3 ? 5.549 -6.280 7.248 1.00 15.07 ? 3 DC A "C5'" 1 ATOM 46 C "C4'" . DC A 1 3 ? 5.978 -4.859 6.985 1.00 13.21 ? 3 DC A "C4'" 1 ATOM 47 O "O4'" . DC A 1 3 ? 4.925 -4.046 6.355 1.00 12.75 ? 3 DC A "O4'" 1 ATOM 48 C "C3'" . DC A 1 3 ? 6.443 -4.167 8.257 1.00 12.02 ? 3 DC A "C3'" 1 ATOM 49 O "O3'" . DC A 1 3 ? 7.589 -3.423 7.954 1.00 13.86 ? 3 DC A "O3'" 1 ATOM 50 C "C2'" . DC A 1 3 ? 5.300 -3.225 8.552 1.00 10.46 ? 3 DC A "C2'" 1 ATOM 51 C "C1'" . DC A 1 3 ? 4.787 -2.885 7.162 1.00 13.10 ? 3 DC A "C1'" 1 ATOM 52 N N1 . DC A 1 3 ? 3.357 -2.484 7.226 1.00 13.10 ? 3 DC A N1 1 ATOM 53 C C2 . DC A 1 3 ? 3.036 -1.138 7.466 1.00 10.97 ? 3 DC A C2 1 ATOM 54 O O2 . DC A 1 3 ? 3.932 -0.303 7.627 1.00 10.40 ? 3 DC A O2 1 ATOM 55 N N3 . DC A 1 3 ? 1.719 -0.817 7.479 1.00 11.83 ? 3 DC A N3 1 ATOM 56 C C4 . DC A 1 3 ? 0.748 -1.725 7.326 1.00 12.82 ? 3 DC A C4 1 ATOM 57 N N4 . DC A 1 3 ? -0.526 -1.292 7.395 1.00 12.19 ? 3 DC A N4 1 ATOM 58 C C5 . DC A 1 3 ? 1.064 -3.096 7.076 1.00 13.21 ? 3 DC A C5 1 ATOM 59 C C6 . DC A 1 3 ? 2.359 -3.415 7.044 1.00 13.67 ? 3 DC A C6 1 ATOM 60 P P . DG A 1 4 ? 9.075 -3.983 8.010 1.00 15.49 ? 4 DG A P 1 ATOM 61 O OP1 . DG A 1 4 ? 9.241 -4.813 9.206 1.00 14.46 ? 4 DG A OP1 1 ATOM 62 O OP2 . DG A 1 4 ? 9.861 -2.758 7.921 1.00 18.21 ? 4 DG A OP2 1 ATOM 63 O "O5'" . DG A 1 4 ? 9.338 -4.817 6.685 1.00 15.58 ? 4 DG A "O5'" 1 ATOM 64 C "C5'" . DG A 1 4 ? 9.164 -4.234 5.432 1.00 13.72 ? 4 DG A "C5'" 1 ATOM 65 C "C4'" . DG A 1 4 ? 9.250 -5.307 4.397 1.00 14.28 ? 4 DG A "C4'" 1 ATOM 66 O "O4'" . DG A 1 4 ? 8.157 -6.240 4.486 1.00 15.03 ? 4 DG A "O4'" 1 ATOM 67 C "C3'" . DG A 1 4 ? 9.202 -4.718 3.013 1.00 14.84 ? 4 DG A "C3'" 1 ATOM 68 O "O3'" . DG A 1 4 ? 10.549 -4.555 2.627 1.00 20.03 ? 4 DG A "O3'" 1 ATOM 69 C "C2'" . DG A 1 4 ? 8.482 -5.764 2.185 1.00 15.65 ? 4 DG A "C2'" 1 ATOM 70 C "C1'" . DG A 1 4 ? 7.721 -6.609 3.198 1.00 13.96 ? 4 DG A "C1'" 1 ATOM 71 N N9 . DG A 1 4 ? 6.293 -6.429 3.250 1.00 13.07 ? 4 DG A N9 1 ATOM 72 C C8 . DG A 1 4 ? 5.361 -7.419 3.220 1.00 13.15 ? 4 DG A C8 1 ATOM 73 N N7 . DG A 1 4 ? 4.142 -6.996 3.301 1.00 14.57 ? 4 DG A N7 1 ATOM 74 C C5 . DG A 1 4 ? 4.285 -5.621 3.395 1.00 15.69 ? 4 DG A C5 1 ATOM 75 C C6 . DG A 1 4 ? 3.297 -4.611 3.515 1.00 14.04 ? 4 DG A C6 1 ATOM 76 O O6 . DG A 1 4 ? 2.075 -4.766 3.553 1.00 15.16 ? 4 DG A O6 1 ATOM 77 N N1 . DG A 1 4 ? 3.841 -3.333 3.565 1.00 12.91 ? 4 DG A N1 1 ATOM 78 C C2 . DG A 1 4 ? 5.161 -3.030 3.523 1.00 12.75 ? 4 DG A C2 1 ATOM 79 N N2 . DG A 1 4 ? 5.467 -1.744 3.627 1.00 13.57 ? 4 DG A N2 1 ATOM 80 N N3 . DG A 1 4 ? 6.097 -3.974 3.425 1.00 14.09 ? 4 DG A N3 1 ATOM 81 C C4 . DG A 1 4 ? 5.597 -5.241 3.364 1.00 14.08 ? 4 DG A C4 1 ATOM 82 P P . DC A 1 5 ? 11.120 -3.214 1.935 1.00 21.68 ? 5 DC A P 1 ATOM 83 O OP1 . DC A 1 5 ? 12.416 -3.606 1.323 1.00 21.28 ? 5 DC A OP1 1 ATOM 84 O OP2 . DC A 1 5 ? 11.099 -2.104 2.902 1.00 19.56 ? 5 DC A OP2 1 ATOM 85 O "O5'" . DC A 1 5 ? 10.119 -3.032 0.686 1.00 15.96 ? 5 DC A "O5'" 1 ATOM 86 C "C5'" . DC A 1 5 ? 10.536 -2.293 -0.452 1.00 13.87 ? 5 DC A "C5'" 1 ATOM 87 C "C4'" . DC A 1 5 ? 9.575 -1.149 -0.719 1.00 11.78 ? 5 DC A "C4'" 1 ATOM 88 O "O4'" . DC A 1 5 ? 8.358 -1.699 -1.239 1.00 11.64 ? 5 DC A "O4'" 1 ATOM 89 C "C3'" . DC A 1 5 ? 9.210 -0.283 0.501 1.00 12.97 ? 5 DC A "C3'" 1 ATOM 90 O "O3'" . DC A 1 5 ? 9.161 1.064 0.044 1.00 14.85 ? 5 DC A "O3'" 1 ATOM 91 C "C2'" . DC A 1 5 ? 7.813 -0.746 0.901 1.00 12.73 ? 5 DC A "C2'" 1 ATOM 92 C "C1'" . DC A 1 5 ? 7.273 -1.203 -0.460 1.00 12.90 ? 5 DC A "C1'" 1 ATOM 93 N N1 . DC A 1 5 ? 6.211 -2.227 -0.273 1.00 14.14 ? 5 DC A N1 1 ATOM 94 C C2 . DC A 1 5 ? 4.917 -1.769 -0.005 1.00 13.13 ? 5 DC A C2 1 ATOM 95 O O2 . DC A 1 5 ? 4.686 -0.556 0.040 1.00 13.78 ? 5 DC A O2 1 ATOM 96 N N3 . DC A 1 5 ? 3.970 -2.696 0.174 1.00 15.72 ? 5 DC A N3 1 ATOM 97 C C4 . DC A 1 5 ? 4.260 -3.999 0.106 1.00 14.42 ? 5 DC A C4 1 ATOM 98 N N4 . DC A 1 5 ? 3.267 -4.858 0.281 1.00 15.78 ? 5 DC A N4 1 ATOM 99 C C5 . DC A 1 5 ? 5.568 -4.493 -0.169 1.00 16.91 ? 5 DC A C5 1 ATOM 100 C C6 . DC A 1 5 ? 6.495 -3.560 -0.346 1.00 14.63 ? 5 DC A C6 1 ATOM 101 P P . DG A 1 6 ? 10.374 2.077 0.128 1.00 17.92 ? 6 DG A P 1 ATOM 102 O OP1 . DG A 1 6 ? 10.995 1.944 1.466 1.00 17.50 ? 6 DG A OP1 1 ATOM 103 O OP2 . DG A 1 6 ? 9.832 3.366 -0.301 1.00 20.65 ? 6 DG A OP2 1 ATOM 104 O "O5'" . DG A 1 6 ? 11.410 1.588 -0.988 1.00 15.49 ? 6 DG A "O5'" 1 ATOM 105 C "C5'" . DG A 1 6 ? 11.235 1.762 -2.377 1.00 12.70 ? 6 DG A "C5'" 1 ATOM 106 C "C4'" . DG A 1 6 ? 12.399 1.111 -3.088 1.00 13.80 ? 6 DG A "C4'" 1 ATOM 107 O "O4'" . DG A 1 6 ? 12.237 -0.323 -2.972 1.00 14.00 ? 6 DG A "O4'" 1 ATOM 108 C "C3'" . DG A 1 6 ? 12.562 1.403 -4.600 1.00 15.55 ? 6 DG A "C3'" 1 ATOM 109 O "O3'" . DG A 1 6 ? 13.979 1.374 -4.980 1.00 16.81 ? 6 DG A "O3'" 1 ATOM 110 C "C2'" . DG A 1 6 ? 11.835 0.230 -5.260 1.00 14.67 ? 6 DG A "C2'" 1 ATOM 111 C "C1'" . DG A 1 6 ? 12.167 -0.898 -4.265 1.00 13.70 ? 6 DG A "C1'" 1 ATOM 112 N N9 . DG A 1 6 ? 11.193 -1.959 -4.208 1.00 13.91 ? 6 DG A N9 1 ATOM 113 C C8 . DG A 1 6 ? 11.480 -3.288 -4.235 1.00 14.64 ? 6 DG A C8 1 ATOM 114 N N7 . DG A 1 6 ? 10.440 -4.065 -4.156 1.00 17.54 ? 6 DG A N7 1 ATOM 115 C C5 . DG A 1 6 ? 9.371 -3.174 -4.077 1.00 15.77 ? 6 DG A C5 1 ATOM 116 C C6 . DG A 1 6 ? 7.981 -3.422 -3.981 1.00 14.01 ? 6 DG A C6 1 ATOM 117 O O6 . DG A 1 6 ? 7.416 -4.496 -3.949 1.00 15.95 ? 6 DG A O6 1 ATOM 118 N N1 . DG A 1 6 ? 7.230 -2.256 -3.924 1.00 13.90 ? 6 DG A N1 1 ATOM 119 C C2 . DG A 1 6 ? 7.761 -0.972 -3.943 1.00 12.80 ? 6 DG A C2 1 ATOM 120 N N2 . DG A 1 6 ? 6.893 0.047 -3.844 1.00 11.97 ? 6 DG A N2 1 ATOM 121 N N3 . DG A 1 6 ? 9.072 -0.734 -4.040 1.00 11.51 ? 6 DG A N3 1 ATOM 122 C C4 . DG A 1 6 ? 9.820 -1.863 -4.109 1.00 13.58 ? 6 DG A C4 1 ATOM 123 O "O5'" . DC B 2 1 ? -1.795 -2.111 -4.136 1.00 12.99 ? 7 DC B "O5'" 1 ATOM 124 C "C5'" . DC B 2 1 ? -1.996 -1.153 -3.081 1.00 12.64 ? 7 DC B "C5'" 1 ATOM 125 C "C4'" . DC B 2 1 ? -0.867 -0.132 -2.899 1.00 12.98 ? 7 DC B "C4'" 1 ATOM 126 O "O4'" . DC B 2 1 ? 0.270 -0.818 -2.328 1.00 13.64 ? 7 DC B "O4'" 1 ATOM 127 C "C3'" . DC B 2 1 ? -0.335 0.587 -4.129 1.00 12.56 ? 7 DC B "C3'" 1 ATOM 128 O "O3'" . DC B 2 1 ? 0.078 1.926 -3.776 1.00 14.32 ? 7 DC B "O3'" 1 ATOM 129 C "C2'" . DC B 2 1 ? 0.874 -0.275 -4.525 1.00 12.70 ? 7 DC B "C2'" 1 ATOM 130 C "C1'" . DC B 2 1 ? 1.408 -0.625 -3.125 1.00 13.12 ? 7 DC B "C1'" 1 ATOM 131 N N1 . DC B 2 1 ? 2.230 -1.847 -3.142 1.00 13.59 ? 7 DC B N1 1 ATOM 132 C C2 . DC B 2 1 ? 3.618 -1.698 -3.350 1.00 12.53 ? 7 DC B C2 1 ATOM 133 O O2 . DC B 2 1 ? 4.091 -0.568 -3.501 1.00 11.78 ? 7 DC B O2 1 ATOM 134 N N3 . DC B 2 1 ? 4.363 -2.822 -3.393 1.00 13.36 ? 7 DC B N3 1 ATOM 135 C C4 . DC B 2 1 ? 3.810 -4.017 -3.248 1.00 13.19 ? 7 DC B C4 1 ATOM 136 N N4 . DC B 2 1 ? 4.606 -5.079 -3.317 1.00 16.26 ? 7 DC B N4 1 ATOM 137 C C5 . DC B 2 1 ? 2.406 -4.201 -3.034 1.00 14.67 ? 7 DC B C5 1 ATOM 138 C C6 . DC B 2 1 ? 1.659 -3.089 -2.992 1.00 12.15 ? 7 DC B C6 1 ATOM 139 P P . DG B 2 2 ? -0.906 3.199 -3.841 1.00 18.26 ? 8 DG B P 1 ATOM 140 O OP1 . DG B 2 2 ? -1.736 3.015 -5.027 1.00 16.50 ? 8 DG B OP1 1 ATOM 141 O OP2 . DG B 2 2 ? -0.110 4.427 -3.689 1.00 18.84 ? 8 DG B OP2 1 ATOM 142 O "O5'" . DG B 2 2 ? -1.909 3.090 -2.616 1.00 13.29 ? 8 DG B "O5'" 1 ATOM 143 C "C5'" . DG B 2 2 ? -1.466 3.201 -1.277 1.00 14.52 ? 8 DG B "C5'" 1 ATOM 144 C "C4'" . DG B 2 2 ? -2.602 2.847 -0.356 1.00 13.40 ? 8 DG B "C4'" 1 ATOM 145 O "O4'" . DG B 2 2 ? -2.949 1.487 -0.613 1.00 13.56 ? 8 DG B "O4'" 1 ATOM 146 C "C3'" . DG B 2 2 ? -2.205 2.878 1.117 1.00 14.41 ? 8 DG B "C3'" 1 ATOM 147 O "O3'" . DG B 2 2 ? -2.638 4.119 1.609 1.00 17.63 ? 8 DG B "O3'" 1 ATOM 148 C "C2'" . DG B 2 2 ? -2.963 1.750 1.759 1.00 14.66 ? 8 DG B "C2'" 1 ATOM 149 C "C1'" . DG B 2 2 ? -3.269 0.837 0.600 1.00 14.83 ? 8 DG B "C1'" 1 ATOM 150 N N9 . DG B 2 2 ? -2.534 -0.402 0.611 1.00 16.04 ? 8 DG B N9 1 ATOM 151 C C8 . DG B 2 2 ? -3.106 -1.628 0.671 1.00 14.39 ? 8 DG B C8 1 ATOM 152 N N7 . DG B 2 2 ? -2.253 -2.594 0.653 1.00 18.35 ? 8 DG B N7 1 ATOM 153 C C5 . DG B 2 2 ? -1.014 -1.957 0.591 1.00 17.23 ? 8 DG B C5 1 ATOM 154 C C6 . DG B 2 2 ? 0.281 -2.522 0.539 1.00 18.11 ? 8 DG B C6 1 ATOM 155 O O6 . DG B 2 2 ? 0.519 -3.733 0.532 1.00 17.71 ? 8 DG B O6 1 ATOM 156 N N1 . DG B 2 2 ? 1.291 -1.552 0.473 1.00 18.78 ? 8 DG B N1 1 ATOM 157 C C2 . DG B 2 2 ? 1.044 -0.190 0.453 1.00 18.52 ? 8 DG B C2 1 ATOM 158 N N2 . DG B 2 2 ? 2.090 0.627 0.362 1.00 19.07 ? 8 DG B N2 1 ATOM 159 N N3 . DG B 2 2 ? -0.167 0.346 0.493 1.00 15.50 ? 8 DG B N3 1 ATOM 160 C C4 . DG B 2 2 ? -1.154 -0.596 0.558 1.00 17.74 ? 8 DG B C4 1 ATOM 161 P P A DC B 2 3 ? -1.568 5.222 2.097 0.50 14.46 ? 9 DC B P 1 ATOM 162 P P B DC B 2 3 ? -2.514 4.621 3.152 0.50 16.48 ? 9 DC B P 1 ATOM 163 O OP1 A DC B 2 3 ? -2.351 6.360 2.616 0.50 15.17 ? 9 DC B OP1 1 ATOM 164 O OP1 B DC B 2 3 ? -3.138 3.663 4.101 0.50 16.30 ? 9 DC B OP1 1 ATOM 165 O OP2 A DC B 2 3 ? -0.523 5.436 1.066 0.50 14.34 ? 9 DC B OP2 1 ATOM 166 O OP2 B DC B 2 3 ? -2.917 6.034 3.161 0.50 16.96 ? 9 DC B OP2 1 ATOM 167 O "O5'" . DC B 2 3 ? -0.937 4.482 3.372 1.00 14.89 ? 9 DC B "O5'" 1 ATOM 168 C "C5'" . DC B 2 3 ? -0.238 5.235 4.348 1.00 12.13 ? 9 DC B "C5'" 1 ATOM 169 C "C4'" . DC B 2 3 ? 1.150 4.647 4.534 1.00 11.58 ? 9 DC B "C4'" 1 ATOM 170 O "O4'" . DC B 2 3 ? 1.106 3.274 4.988 1.00 11.80 ? 9 DC B "O4'" 1 ATOM 171 C "C3'" . DC B 2 3 ? 2.039 4.672 3.302 1.00 11.58 ? 9 DC B "C3'" 1 ATOM 172 O "O3'" . DC B 2 3 ? 3.330 5.041 3.682 1.00 14.81 ? 9 DC B "O3'" 1 ATOM 173 C "C2'" . DC B 2 3 ? 2.058 3.221 2.827 1.00 13.34 ? 9 DC B "C2'" 1 ATOM 174 C "C1'" . DC B 2 3 ? 1.972 2.519 4.169 1.00 12.79 ? 9 DC B "C1'" 1 ATOM 175 N N1 . DC B 2 3 ? 1.413 1.172 4.076 1.00 13.24 ? 9 DC B N1 1 ATOM 176 C C2 . DC B 2 3 ? 2.293 0.095 3.971 1.00 13.27 ? 9 DC B C2 1 ATOM 177 O O2 . DC B 2 3 ? 3.493 0.308 3.940 1.00 13.63 ? 9 DC B O2 1 ATOM 178 N N3 . DC B 2 3 ? 1.794 -1.156 3.909 1.00 15.10 ? 9 DC B N3 1 ATOM 179 C C4 . DC B 2 3 ? 0.481 -1.364 3.916 1.00 16.30 ? 9 DC B C4 1 ATOM 180 N N4 . DC B 2 3 ? 0.054 -2.626 3.831 1.00 17.71 ? 9 DC B N4 1 ATOM 181 C C5 . DC B 2 3 ? -0.441 -0.278 4.018 1.00 15.82 ? 9 DC B C5 1 ATOM 182 C C6 . DC B 2 3 ? 0.065 0.960 4.096 1.00 14.55 ? 9 DC B C6 1 ATOM 183 P P . DG B 2 4 ? 3.880 6.516 3.538 1.00 17.33 ? 10 DG B P 1 ATOM 184 O OP1 . DG B 2 4 ? 3.279 7.236 2.427 1.00 17.88 ? 10 DG B OP1 1 ATOM 185 O OP2 . DG B 2 4 ? 5.324 6.328 3.626 1.00 17.20 ? 10 DG B OP2 1 ATOM 186 O "O5'" . DG B 2 4 ? 3.297 7.247 4.832 1.00 16.58 ? 10 DG B "O5'" 1 ATOM 187 C "C5'" . DG B 2 4 ? 3.796 6.968 6.134 1.00 14.16 ? 10 DG B "C5'" 1 ATOM 188 C "C4'" . DG B 2 4 ? 2.916 7.659 7.137 1.00 11.81 ? 10 DG B "C4'" 1 ATOM 189 O "O4'" . DG B 2 4 ? 1.559 7.272 6.940 1.00 11.90 ? 10 DG B "O4'" 1 ATOM 190 C "C3'" . DG B 2 4 ? 3.243 7.203 8.540 1.00 12.66 ? 10 DG B "C3'" 1 ATOM 191 O "O3'" . DG B 2 4 ? 4.210 8.128 9.040 1.00 16.09 ? 10 DG B "O3'" 1 ATOM 192 C "C2'" . DG B 2 4 ? 1.904 7.303 9.261 1.00 12.60 ? 10 DG B "C2'" 1 ATOM 193 C "C1'" . DG B 2 4 ? 0.859 7.222 8.137 1.00 11.84 ? 10 DG B "C1'" 1 ATOM 194 N N9 . DG B 2 4 ? 0.152 5.961 8.099 1.00 12.31 ? 10 DG B N9 1 ATOM 195 C C8 . DG B 2 4 ? -1.207 5.817 8.091 1.00 12.42 ? 10 DG B C8 1 ATOM 196 N N7 . DG B 2 4 ? -1.605 4.583 8.045 1.00 13.73 ? 10 DG B N7 1 ATOM 197 C C5 . DG B 2 4 ? -0.417 3.835 8.003 1.00 12.87 ? 10 DG B C5 1 ATOM 198 C C6 . DG B 2 4 ? -0.198 2.432 7.954 1.00 12.12 ? 10 DG B C6 1 ATOM 199 O O6 . DG B 2 4 ? -1.015 1.526 7.904 1.00 13.73 ? 10 DG B O6 1 ATOM 200 N N1 . DG B 2 4 ? 1.153 2.087 7.924 1.00 12.17 ? 10 DG B N1 1 ATOM 201 C C2 . DG B 2 4 ? 2.180 3.004 7.931 1.00 11.12 ? 10 DG B C2 1 ATOM 202 N N2 . DG B 2 4 ? 3.425 2.510 7.854 1.00 12.11 ? 10 DG B N2 1 ATOM 203 N N3 . DG B 2 4 ? 1.983 4.305 7.981 1.00 9.95 ? 10 DG B N3 1 ATOM 204 C C4 . DG B 2 4 ? 0.676 4.671 8.019 1.00 11.69 ? 10 DG B C4 1 ATOM 205 P P . DT B 2 5 ? 5.632 7.716 9.636 1.00 18.96 ? 11 DT B P 1 ATOM 206 O OP1 . DT B 2 5 ? 6.317 8.985 10.028 1.00 21.76 ? 11 DT B OP1 1 ATOM 207 O OP2 . DT B 2 5 ? 6.377 6.820 8.728 1.00 18.18 ? 11 DT B OP2 1 ATOM 208 O "O5'" . DT B 2 5 ? 5.182 6.902 10.924 1.00 15.19 ? 11 DT B "O5'" 1 ATOM 209 C "C5'" . DT B 2 5 ? 6.190 6.599 11.880 1.00 14.41 ? 11 DT B "C5'" 1 ATOM 210 C "C4'" . DT B 2 5 ? 6.280 5.113 12.156 1.00 15.00 ? 11 DT B "C4'" 1 ATOM 211 O "O4'" . DT B 2 5 ? 4.992 4.653 12.615 1.00 15.26 ? 11 DT B "O4'" 1 ATOM 212 C "C3'" . DT B 2 5 ? 6.692 4.247 10.979 1.00 13.72 ? 11 DT B "C3'" 1 ATOM 213 O "O3'" . DT B 2 5 ? 7.520 3.271 11.531 1.00 17.02 ? 11 DT B "O3'" 1 ATOM 214 C "C2'" . DT B 2 5 ? 5.393 3.621 10.515 1.00 12.51 ? 11 DT B "C2'" 1 ATOM 215 C "C1'" . DT B 2 5 ? 4.678 3.484 11.871 1.00 14.30 ? 11 DT B "C1'" 1 ATOM 216 N N1 . DT B 2 5 ? 3.226 3.306 11.745 1.00 14.35 ? 11 DT B N1 1 ATOM 217 C C2 . DT B 2 5 ? 2.744 2.011 11.524 1.00 12.59 ? 11 DT B C2 1 ATOM 218 O O2 . DT B 2 5 ? 3.447 1.038 11.441 1.00 14.61 ? 11 DT B O2 1 ATOM 219 N N3 . DT B 2 5 ? 1.394 1.904 11.395 1.00 13.92 ? 11 DT B N3 1 ATOM 220 C C4 . DT B 2 5 ? 0.510 2.954 11.474 1.00 15.25 ? 11 DT B C4 1 ATOM 221 O O4 . DT B 2 5 ? -0.676 2.770 11.347 1.00 15.00 ? 11 DT B O4 1 ATOM 222 C C5 . DT B 2 5 ? 1.049 4.280 11.710 1.00 15.52 ? 11 DT B C5 1 ATOM 223 C C7 . DT B 2 5 ? 0.115 5.428 11.966 1.00 18.20 ? 11 DT B C7 1 ATOM 224 C C6 . DT B 2 5 ? 2.375 4.396 11.830 1.00 14.62 ? 11 DT B C6 1 ATOM 225 P P . DG B 2 6 ? 9.096 3.298 11.371 1.00 19.78 ? 12 DG B P 1 ATOM 226 O OP1 . DG B 2 6 ? 9.497 3.844 10.087 1.00 17.56 ? 12 DG B OP1 1 ATOM 227 O OP2 . DG B 2 6 ? 9.512 1.948 11.826 1.00 21.55 ? 12 DG B OP2 1 ATOM 228 O "O5'" . DG B 2 6 ? 9.548 4.377 12.474 1.00 18.53 ? 12 DG B "O5'" 1 ATOM 229 C "C5'" . DG B 2 6 ? 9.655 4.028 13.803 1.00 15.17 ? 12 DG B "C5'" 1 ATOM 230 C "C4'" . DG B 2 6 ? 10.126 5.241 14.564 1.00 14.10 ? 12 DG B "C4'" 1 ATOM 231 O "O4'" . DG B 2 6 ? 9.045 6.188 14.565 1.00 12.50 ? 12 DG B "O4'" 1 ATOM 232 C "C3'" . DG B 2 6 ? 10.468 4.926 16.010 1.00 15.57 ? 12 DG B "C3'" 1 ATOM 233 O "O3'" . DG B 2 6 ? 11.633 5.713 16.396 1.00 17.25 ? 12 DG B "O3'" 1 ATOM 234 C "C2'" . DG B 2 6 ? 9.186 5.290 16.732 1.00 13.14 ? 12 DG B "C2'" 1 ATOM 235 C "C1'" . DG B 2 6 ? 8.651 6.447 15.890 1.00 14.08 ? 12 DG B "C1'" 1 ATOM 236 N N9 . DG B 2 6 ? 7.205 6.568 15.796 1.00 13.75 ? 12 DG B N9 1 ATOM 237 C C8 . DG B 2 6 ? 6.499 7.732 15.775 1.00 10.86 ? 12 DG B C8 1 ATOM 238 N N7 . DG B 2 6 ? 5.231 7.540 15.642 1.00 13.39 ? 12 DG B N7 1 ATOM 239 C C5 . DG B 2 6 ? 5.055 6.165 15.564 1.00 15.37 ? 12 DG B C5 1 ATOM 240 C C6 . DG B 2 6 ? 3.882 5.353 15.411 1.00 15.63 ? 12 DG B C6 1 ATOM 241 O O6 . DG B 2 6 ? 2.700 5.693 15.309 1.00 13.77 ? 12 DG B O6 1 ATOM 242 N N1 . DG B 2 6 ? 4.193 4.001 15.374 1.00 14.11 ? 12 DG B N1 1 ATOM 243 C C2 . DG B 2 6 ? 5.466 3.463 15.450 1.00 11.65 ? 12 DG B C2 1 ATOM 244 N N2 . DG B 2 6 ? 5.620 2.142 15.383 1.00 11.98 ? 12 DG B N2 1 ATOM 245 N N3 . DG B 2 6 ? 6.537 4.217 15.574 1.00 13.44 ? 12 DG B N3 1 ATOM 246 C C4 . DG B 2 6 ? 6.284 5.544 15.636 1.00 13.79 ? 12 DG B C4 1 HETATM 247 O O . HOH C 3 . ? 8.217 -0.886 4.360 1.00 16.34 ? 7 HOH A O 1 HETATM 248 O O . HOH C 3 . ? -3.084 -3.242 6.595 1.00 23.08 ? 8 HOH A O 1 HETATM 249 O O . HOH C 3 . ? 7.636 3.016 -2.963 1.00 29.43 ? 17 HOH A O 1 HETATM 250 O O . HOH C 3 . ? -4.573 -2.178 13.993 1.00 32.57 ? 19 HOH A O 1 HETATM 251 O O . HOH C 3 . ? 1.732 -8.511 3.808 1.00 36.42 ? 23 HOH A O 1 HETATM 252 O O . HOH C 3 . ? -1.586 -4.527 17.884 1.00 25.06 ? 24 HOH A O 1 HETATM 253 O O . HOH C 3 . ? 6.162 -8.862 11.730 1.00 26.66 ? 25 HOH A O 1 HETATM 254 O O . HOH C 3 . ? 1.145 -6.612 4.993 1.00 26.97 ? 26 HOH A O 1 HETATM 255 O O . HOH C 3 . ? 8.847 -0.497 6.815 1.00 24.37 ? 27 HOH A O 1 HETATM 256 O O . HOH D 3 . ? 2.973 -7.670 -3.066 1.00 18.61 ? 1 HOH B O 1 HETATM 257 O O . HOH D 3 . ? -2.398 -1.231 -6.548 1.00 17.78 ? 2 HOH B O 1 HETATM 258 O O . HOH D 3 . ? 5.967 4.215 7.118 1.00 19.88 ? 3 HOH B O 1 HETATM 259 O O . HOH D 3 . ? 9.445 8.093 12.434 1.00 16.65 ? 4 HOH B O 1 HETATM 260 O O . HOH D 3 . ? 8.314 0.748 14.342 1.00 20.81 ? 13 HOH B O 1 HETATM 261 O O . HOH D 3 . ? 5.352 -3.583 12.002 1.00 30.43 ? 14 HOH B O 1 HETATM 262 O O . HOH D 3 . ? 2.495 7.993 13.843 1.00 23.91 ? 15 HOH B O 1 HETATM 263 O O . HOH D 3 . ? 5.806 0.198 9.865 1.00 24.96 ? 16 HOH B O 1 HETATM 264 O O . HOH D 3 . ? -2.948 -4.501 -3.358 1.00 21.66 ? 17 HOH B O 1 HETATM 265 O O . HOH D 3 . ? 0.890 7.013 17.697 1.00 29.44 ? 18 HOH B O 1 HETATM 266 O O . HOH D 3 . ? 5.284 1.601 1.993 1.00 19.92 ? 19 HOH B O 1 HETATM 267 O O . HOH D 3 . ? 2.081 3.847 -0.524 1.00 26.15 ? 20 HOH B O 1 HETATM 268 O O . HOH D 3 . ? -0.650 -5.921 -2.001 1.00 40.74 ? 21 HOH B O 1 HETATM 269 O O . HOH D 3 . ? 5.944 -1.294 13.008 1.00 38.34 ? 22 HOH B O 1 HETATM 270 O O . HOH D 3 . ? 5.739 10.298 12.578 1.00 23.45 ? 23 HOH B O 1 HETATM 271 O O . HOH D 3 . ? 0.049 8.778 4.817 1.00 20.16 ? 24 HOH B O 1 HETATM 272 O O . HOH D 3 . ? 5.759 1.053 5.409 1.00 22.79 ? 25 HOH B O 1 HETATM 273 O O . HOH D 3 . ? 3.866 1.444 -5.969 1.00 21.98 ? 26 HOH B O 1 #