data_3FVA # _entry.id 3FVA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FVA pdb_00003fva 10.2210/pdb3fva/pdb RCSB RCSB051085 ? ? WWPDB D_1000051085 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3FVA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Apostol, M.I.' 1 'Eisenberg, D.' 2 # _citation.id primary _citation.title 'Molecular mechanisms for protein-encoded inheritance.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 16 _citation.page_first 973 _citation.page_last 978 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19684598 _citation.pdbx_database_id_DOI 10.1038/nsmb.1643 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wiltzius, J.J.' 1 ? primary 'Landau, M.' 2 ? primary 'Nelson, R.' 3 ? primary 'Sawaya, M.R.' 4 ? primary 'Apostol, M.I.' 5 ? primary 'Goldschmidt, L.' 6 ? primary 'Soriaga, A.B.' 7 ? primary 'Cascio, D.' 8 ? primary 'Rajashankar, K.' 9 ? primary 'Eisenberg, D.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Major prion protein' 736.730 1 ? ? 'NNQNTF (residues 173-178)' ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PrP # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NNQNTF _entity_poly.pdbx_seq_one_letter_code_can NNQNTF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 ASN n 1 3 GLN n 1 4 ASN n 1 5 THR n 1 6 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'NNQNTF (residues 173-178) from elk prion protein' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 PHE 6 6 6 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 7 1 HOH HOH A . B 2 HOH 2 8 2 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 # _cell.length_a 18.061 _cell.length_b 4.840 _cell.length_c 21.362 _cell.angle_alpha 90.000 _cell.angle_beta 100.100 _cell.angle_gamma 90.000 _cell.entry_id 3FVA _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3FVA _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3FVA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.248 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 1.417 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2M Ammonium Sulfate, 0.1M Tris pH 8.5, 25% PEG 3350, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-05-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.946496 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_wavelength_list 0.946496 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 # _reflns.entry_id 3FVA _reflns.d_resolution_high 1.450 _reflns.d_resolution_low 30.000 _reflns.number_obs 750 _reflns.pdbx_Rmerge_I_obs 0.137 _reflns.pdbx_netI_over_sigmaI 7.197 _reflns.pdbx_chi_squared 1.031 _reflns.pdbx_redundancy 5.400 _reflns.percent_possible_obs 98.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.45 1.50 ? ? ? 0.273 ? ? 1.082 4.30 ? 79 100.00 ? 1 1.50 1.56 ? ? ? 0.216 ? ? 1.032 4.80 ? 72 98.60 ? 2 1.56 1.63 ? ? ? 0.205 ? ? 1.024 5.40 ? 67 89.30 ? 3 1.63 1.72 ? ? ? 0.183 ? ? 1.019 6.10 ? 58 100.00 ? 4 1.72 1.83 ? ? ? 0.227 ? ? 1.048 6.00 ? 75 100.00 ? 5 1.83 1.97 ? ? ? 0.137 ? ? 1.051 6.10 ? 71 100.00 ? 6 1.97 2.17 ? ? ? 0.135 ? ? 1.023 6.10 ? 78 100.00 ? 7 2.17 2.48 ? ? ? 0.164 ? ? 1.027 5.50 ? 83 98.80 ? 8 2.48 3.12 ? ? ? 0.090 ? ? 1.012 5.50 ? 71 100.00 ? 9 3.12 30.00 ? ? ? 0.081 ? ? 1.006 4.90 ? 96 100.00 ? 10 # _refine.entry_id 3FVA _refine.ls_d_res_high 1.458 _refine.ls_d_res_low 21.030 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.900 _refine.ls_number_reflns_obs 747 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.163 _refine.ls_R_factor_R_work 0.162 _refine.ls_wR_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.174 _refine.ls_wR_factor_R_free 0.187 _refine.ls_percent_reflns_R_free 5.400 _refine.ls_number_reflns_R_free 40 _refine.B_iso_mean 0.702 _refine.aniso_B[1][1] -0.030 _refine.aniso_B[2][2] 0.170 _refine.aniso_B[3][3] -0.030 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.320 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.974 _refine.overall_SU_R_Cruickshank_DPI 0.080 _refine.overall_SU_R_free 0.072 _refine.pdbx_overall_ESU_R 0.080 _refine.pdbx_overall_ESU_R_Free 0.072 _refine.overall_SU_ML 0.038 _refine.overall_SU_B 0.981 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.914 _refine.B_iso_max 11.11 _refine.B_iso_min 0.00 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 52 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 54 _refine_hist.d_res_high 1.458 _refine_hist.d_res_low 21.030 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 52 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 70 0.770 1.826 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5 7.350 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 5 46.676 28.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 7 7.549 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 7 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 47 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 8 0.150 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 34 0.288 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 16 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 31 0.409 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 48 0.654 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 23 0.729 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 22 0.946 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.458 _refine_ls_shell.d_res_low 1.496 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 85.710 _refine_ls_shell.number_reflns_R_work 40 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.236 _refine_ls_shell.R_factor_R_free 0.396 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 2 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 42 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FVA _struct.title 'NNQNTF segment from elk prion' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FVA _struct_keywords.text 'amyloid-like protofibril, Cell membrane, Glycoprotein, Golgi apparatus, GPI-anchor, Lipoprotein, Membrane, Prion, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIO_CEREN _struct_ref.pdbx_db_accession P67986 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code NNQNTF _struct_ref.pdbx_align_begin 173 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FVA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P67986 _struct_ref_seq.db_align_beg 173 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 178 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_454 -x-1,y+1/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -14.3148159972 0.0000000000 1.0000000000 0.0000000000 2.4200000000 0.0000000000 0.0000000000 -1.0000000000 -21.0309569306 5 'crystal symmetry operation' 2_464 -x-1,y+3/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -14.3148159972 0.0000000000 1.0000000000 0.0000000000 7.2600000000 0.0000000000 0.0000000000 -1.0000000000 -21.0309569306 6 'crystal symmetry operation' 2_444 -x-1,y-1/2,-z-1 -1.0000000000 0.0000000000 0.0000000000 -14.3148159972 0.0000000000 1.0000000000 0.0000000000 -2.4200000000 0.0000000000 0.0000000000 -1.0000000000 -21.0309569306 # _struct_biol.id 1 _struct_biol.details ;Authors state that the biological unit is an indefinitely long pair of sheets (a protofibril). One sheet is constructed from chain A (X,Y,Z) and unit cell translations along b cell dimension (e.g. X,Y+1,Z; X,Y-1,Z). The second sheet is constructed from crystallographic symmetry operator -x-1,y+1/2,-z-1 and unit cell translations along the b dimension (e.g. -x-1,y+3/2,-z-1). There is an additional polymorph of the biological unit (also a pair of beta sheets). One sheet is constructed from chain A (X,Y,Z) and unit cell translations along b cell dimension (e.g. X,Y+1,Z; X,Y-1,Z). The second sheet is constructed from crystallographic symmetry operator -x,y+1/2,-z-1 and unit cell translations along the b dimension (e.g. -x,y+3/2,-z-1). ; # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 PHE N N N N 41 PHE CA C N S 42 PHE C C N N 43 PHE O O N N 44 PHE CB C N N 45 PHE CG C Y N 46 PHE CD1 C Y N 47 PHE CD2 C Y N 48 PHE CE1 C Y N 49 PHE CE2 C Y N 50 PHE CZ C Y N 51 PHE OXT O N N 52 PHE H H N N 53 PHE H2 H N N 54 PHE HA H N N 55 PHE HB2 H N N 56 PHE HB3 H N N 57 PHE HD1 H N N 58 PHE HD2 H N N 59 PHE HE1 H N N 60 PHE HE2 H N N 61 PHE HZ H N N 62 PHE HXT H N N 63 THR N N N N 64 THR CA C N S 65 THR C C N N 66 THR O O N N 67 THR CB C N R 68 THR OG1 O N N 69 THR CG2 C N N 70 THR OXT O N N 71 THR H H N N 72 THR H2 H N N 73 THR HA H N N 74 THR HB H N N 75 THR HG1 H N N 76 THR HG21 H N N 77 THR HG22 H N N 78 THR HG23 H N N 79 THR HXT H N N 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 PHE N CA sing N N 38 PHE N H sing N N 39 PHE N H2 sing N N 40 PHE CA C sing N N 41 PHE CA CB sing N N 42 PHE CA HA sing N N 43 PHE C O doub N N 44 PHE C OXT sing N N 45 PHE CB CG sing N N 46 PHE CB HB2 sing N N 47 PHE CB HB3 sing N N 48 PHE CG CD1 doub Y N 49 PHE CG CD2 sing Y N 50 PHE CD1 CE1 sing Y N 51 PHE CD1 HD1 sing N N 52 PHE CD2 CE2 doub Y N 53 PHE CD2 HD2 sing N N 54 PHE CE1 CZ doub Y N 55 PHE CE1 HE1 sing N N 56 PHE CE2 CZ sing Y N 57 PHE CE2 HE2 sing N N 58 PHE CZ HZ sing N N 59 PHE OXT HXT sing N N 60 THR N CA sing N N 61 THR N H sing N N 62 THR N H2 sing N N 63 THR CA C sing N N 64 THR CA CB sing N N 65 THR CA HA sing N N 66 THR C O doub N N 67 THR C OXT sing N N 68 THR CB OG1 sing N N 69 THR CB CG2 sing N N 70 THR CB HB sing N N 71 THR OG1 HG1 sing N N 72 THR CG2 HG21 sing N N 73 THR CG2 HG22 sing N N 74 THR CG2 HG23 sing N N 75 THR OXT HXT sing N N 76 # _atom_sites.entry_id 3FVA _atom_sites.fract_transf_matrix[1][1] 0.055368 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009861 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.206612 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.047549 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . ASN A 1 1 ? -6.702 -0.246 -0.738 1.00 2.32 ? 1 ASN A N 1 ATOM 2 C CA . ASN A 1 1 ? -7.086 -0.456 -2.167 1.00 0.97 ? 1 ASN A CA 1 ATOM 3 C C . ASN A 1 1 ? -6.105 0.245 -3.087 1.00 0.87 ? 1 ASN A C 1 ATOM 4 O O . ASN A 1 1 ? -6.086 1.471 -3.179 1.00 0.63 ? 1 ASN A O 1 ATOM 5 C CB . ASN A 1 1 ? -8.507 0.053 -2.450 1.00 1.13 ? 1 ASN A CB 1 ATOM 6 C CG . ASN A 1 1 ? -9.595 -0.823 -1.836 1.00 1.36 ? 1 ASN A CG 1 ATOM 7 O OD1 . ASN A 1 1 ? -9.322 -1.820 -1.146 1.00 1.08 ? 1 ASN A OD1 1 ATOM 8 N ND2 . ASN A 1 1 ? -10.845 -0.455 -2.097 1.00 2.36 ? 1 ASN A ND2 1 ATOM 9 N N . ASN A 1 2 ? -5.305 -0.560 -3.780 1.00 0.00 ? 2 ASN A N 1 ATOM 10 C CA . ASN A 1 2 ? -4.238 -0.059 -4.637 1.00 0.00 ? 2 ASN A CA 1 ATOM 11 C C . ASN A 1 2 ? -4.339 -0.686 -6.017 1.00 0.00 ? 2 ASN A C 1 ATOM 12 O O . ASN A 1 2 ? -4.460 -1.902 -6.140 1.00 0.00 ? 2 ASN A O 1 ATOM 13 C CB . ASN A 1 2 ? -2.891 -0.381 -3.992 1.00 0.00 ? 2 ASN A CB 1 ATOM 14 C CG . ASN A 1 2 ? -2.771 0.218 -2.611 1.00 0.22 ? 2 ASN A CG 1 ATOM 15 O OD1 . ASN A 1 2 ? -2.940 1.432 -2.438 1.00 0.00 ? 2 ASN A OD1 1 ATOM 16 N ND2 . ASN A 1 2 ? -2.553 -0.630 -1.607 1.00 2.58 ? 2 ASN A ND2 1 ATOM 17 N N . GLN A 1 3 ? -4.312 0.157 -7.046 1.00 0.00 ? 3 GLN A N 1 ATOM 18 C CA . GLN A 1 3 ? -4.492 -0.300 -8.432 1.00 0.00 ? 3 GLN A CA 1 ATOM 19 C C . GLN A 1 3 ? -3.406 0.301 -9.310 1.00 0.00 ? 3 GLN A C 1 ATOM 20 O O . GLN A 1 3 ? -3.213 1.513 -9.314 1.00 0.00 ? 3 GLN A O 1 ATOM 21 C CB . GLN A 1 3 ? -5.873 0.128 -8.959 1.00 0.00 ? 3 GLN A CB 1 ATOM 22 C CG . GLN A 1 3 ? -7.049 -0.532 -8.226 1.00 0.00 ? 3 GLN A CG 1 ATOM 23 C CD . GLN A 1 3 ? -8.384 0.084 -8.604 1.00 0.00 ? 3 GLN A CD 1 ATOM 24 O OE1 . GLN A 1 3 ? -8.538 1.308 -8.617 1.00 0.59 ? 3 GLN A OE1 1 ATOM 25 N NE2 . GLN A 1 3 ? -9.375 -0.766 -8.883 1.00 0.00 ? 3 GLN A NE2 1 ATOM 26 N N . ASN A 1 4 ? -2.688 -0.550 -10.038 1.00 0.00 ? 4 ASN A N 1 ATOM 27 C CA . ASN A 1 4 ? -1.748 -0.074 -11.048 1.00 0.00 ? 4 ASN A CA 1 ATOM 28 C C . ASN A 1 4 ? -2.009 -0.747 -12.390 1.00 0.00 ? 4 ASN A C 1 ATOM 29 O O . ASN A 1 4 ? -2.262 -1.949 -12.450 1.00 0.00 ? 4 ASN A O 1 ATOM 30 C CB . ASN A 1 4 ? -0.299 -0.363 -10.629 1.00 0.00 ? 4 ASN A CB 1 ATOM 31 C CG . ASN A 1 4 ? 0.697 0.175 -11.625 1.00 0.00 ? 4 ASN A CG 1 ATOM 32 O OD1 . ASN A 1 4 ? 0.899 1.379 -11.723 1.00 0.00 ? 4 ASN A OD1 1 ATOM 33 N ND2 . ASN A 1 4 ? 1.318 -0.718 -12.380 1.00 0.00 ? 4 ASN A ND2 1 ATOM 34 N N . THR A 1 5 ? -1.942 0.035 -13.461 1.00 0.00 ? 5 THR A N 1 ATOM 35 C CA . THR A 1 5 ? -1.937 -0.543 -14.799 1.00 0.00 ? 5 THR A CA 1 ATOM 36 C C . THR A 1 5 ? -0.871 0.104 -15.676 1.00 0.00 ? 5 THR A C 1 ATOM 37 O O . THR A 1 5 ? -0.674 1.318 -15.627 1.00 0.00 ? 5 THR A O 1 ATOM 38 C CB . THR A 1 5 ? -3.322 -0.437 -15.495 1.00 0.18 ? 5 THR A CB 1 ATOM 39 O OG1 . THR A 1 5 ? -3.203 -0.912 -16.838 1.00 2.35 ? 5 THR A OG1 1 ATOM 40 C CG2 . THR A 1 5 ? -3.844 0.981 -15.511 1.00 0.77 ? 5 THR A CG2 1 ATOM 41 N N . PHE A 1 6 ? -0.187 -0.710 -16.472 1.00 0.00 ? 6 PHE A N 1 ATOM 42 C CA . PHE A 1 6 ? 0.767 -0.200 -17.457 1.00 0.30 ? 6 PHE A CA 1 ATOM 43 C C . PHE A 1 6 ? 0.043 0.142 -18.765 1.00 1.10 ? 6 PHE A C 1 ATOM 44 O O . PHE A 1 6 ? -1.185 -0.034 -18.875 1.00 1.93 ? 6 PHE A O 1 ATOM 45 C CB . PHE A 1 6 ? 1.920 -1.196 -17.666 1.00 0.11 ? 6 PHE A CB 1 ATOM 46 C CG . PHE A 1 6 ? 2.818 -1.298 -16.478 1.00 0.00 ? 6 PHE A CG 1 ATOM 47 C CD1 . PHE A 1 6 ? 2.559 -2.231 -15.482 1.00 0.00 ? 6 PHE A CD1 1 ATOM 48 C CD2 . PHE A 1 6 ? 3.889 -0.428 -16.318 1.00 0.00 ? 6 PHE A CD2 1 ATOM 49 C CE1 . PHE A 1 6 ? 3.379 -2.309 -14.355 1.00 0.00 ? 6 PHE A CE1 1 ATOM 50 C CE2 . PHE A 1 6 ? 4.703 -0.496 -15.202 1.00 0.00 ? 6 PHE A CE2 1 ATOM 51 C CZ . PHE A 1 6 ? 4.446 -1.433 -14.213 1.00 0.00 ? 6 PHE A CZ 1 ATOM 52 O OXT . PHE A 1 6 ? 0.644 0.627 -19.730 1.00 2.12 ? 6 PHE A OXT 1 HETATM 53 O O . HOH B 2 . ? -4.963 1.946 -0.298 1.00 3.85 ? 7 HOH A O 1 HETATM 54 O O . HOH B 2 . ? 3.229 1.122 -20.636 1.00 11.11 ? 8 HOH A O 1 #