data_3HG8 # _entry.id 3HG8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HG8 pdb_00003hg8 10.2210/pdb3hg8/pdb NDB NA0001 ? ? RCSB RCSB053095 ? ? WWPDB D_1000053095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2023-08-02 7 'Structure model' 1 6 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Source and taxonomy' 9 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' software 4 6 'Structure model' citation 5 6 'Structure model' citation_author 6 6 'Structure model' database_2 7 6 'Structure model' ndb_struct_conf_na 8 6 'Structure model' ndb_struct_na_base_pair 9 6 'Structure model' ndb_struct_na_base_pair_step 10 6 'Structure model' pdbx_entity_src_syn 11 6 'Structure model' struct_conn 12 6 'Structure model' struct_conn_type 13 7 'Structure model' chem_comp_atom 14 7 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.name' 2 5 'Structure model' '_software.classification' 3 5 'Structure model' '_software.contact_author' 4 5 'Structure model' '_software.contact_author_email' 5 5 'Structure model' '_software.language' 6 5 'Structure model' '_software.location' 7 5 'Structure model' '_software.name' 8 5 'Structure model' '_software.type' 9 5 'Structure model' '_software.version' 10 6 'Structure model' '_citation.country' 11 6 'Structure model' '_citation.journal_abbrev' 12 6 'Structure model' '_citation.journal_id_CSD' 13 6 'Structure model' '_citation.journal_id_ISSN' 14 6 'Structure model' '_citation.journal_volume' 15 6 'Structure model' '_citation.pdbx_database_id_DOI' 16 6 'Structure model' '_citation.title' 17 6 'Structure model' '_citation.year' 18 6 'Structure model' '_database_2.pdbx_DOI' 19 6 'Structure model' '_database_2.pdbx_database_accession' 20 6 'Structure model' '_ndb_struct_na_base_pair.buckle' 21 6 'Structure model' '_ndb_struct_na_base_pair.opening' 22 6 'Structure model' '_ndb_struct_na_base_pair.propeller' 23 6 'Structure model' '_ndb_struct_na_base_pair.shear' 24 6 'Structure model' '_ndb_struct_na_base_pair.stagger' 25 6 'Structure model' '_ndb_struct_na_base_pair.stretch' 26 6 'Structure model' '_ndb_struct_na_base_pair_step.helical_rise' 27 6 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist' 28 6 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 29 6 'Structure model' '_ndb_struct_na_base_pair_step.rise' 30 6 'Structure model' '_ndb_struct_na_base_pair_step.roll' 31 6 'Structure model' '_ndb_struct_na_base_pair_step.shift' 32 6 'Structure model' '_ndb_struct_na_base_pair_step.slide' 33 6 'Structure model' '_ndb_struct_na_base_pair_step.tilt' 34 6 'Structure model' '_ndb_struct_na_base_pair_step.tip' 35 6 'Structure model' '_ndb_struct_na_base_pair_step.twist' 36 6 'Structure model' '_ndb_struct_na_base_pair_step.x_displacement' 37 6 'Structure model' '_ndb_struct_na_base_pair_step.y_displacement' 38 6 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 39 6 'Structure model' '_pdbx_entity_src_syn.organism_scientific' # _pdbx_database_status.entry_id 3HG8 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-05-13 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3HGA . unspecified PDB 3HGD . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheng, J.' 1 'Hassan, A.E.A.' 2 'Zhang, W.' 3 'Huang, Z.' 4 # _citation.id primary _citation.title 'Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate' _citation.journal_abbrev Chemistryselect _citation.journal_volume 8 _citation.page_first ? _citation.page_last ? _citation.year 2023 _citation.journal_id_ASTM ? _citation.country DE _citation.journal_id_ISSN 2365-6549 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1002/slct.202302253 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fang, Z.' 1 ? primary 'Dantsu, Y.' 2 ? primary 'Chen, C.' 3 ? primary 'Zhang, W.' 4 ? primary 'Huang, Z.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man "5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3'" 2537.642 1 ? ? ? ? 2 water nat water 18.015 38 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(US2)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUGUACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 UMS n 1 3 DG n 1 4 US2 n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'the Se and S containing fragments are chemically synthesized and incorporated into DNA by solid phase synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 US2 'DNA linking' n ;2'-deoxy-5-(methylsulfanyl)uridine 5'-(dihydrogen phosphate) ; "5-SMe-deoxyuridine-5'-phosphate" 'C10 H15 N2 O8 P S' 354.273 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 UMS 2 2 2 UMS UMS A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 US2 4 4 4 US2 US2 A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 20 20 HOH HOH A . B 2 HOH 2 22 22 HOH HOH A . B 2 HOH 3 24 24 HOH HOH A . B 2 HOH 4 25 25 HOH HOH A . B 2 HOH 5 27 27 HOH HOH A . B 2 HOH 6 28 28 HOH HOH A . B 2 HOH 7 29 29 HOH HOH A . B 2 HOH 8 30 30 HOH HOH A . B 2 HOH 9 31 31 HOH HOH A . B 2 HOH 10 32 32 HOH HOH A . B 2 HOH 11 34 34 HOH HOH A . B 2 HOH 12 35 35 HOH HOH A . B 2 HOH 13 36 36 HOH HOH A . B 2 HOH 14 37 37 HOH HOH A . B 2 HOH 15 38 38 HOH HOH A . B 2 HOH 16 40 40 HOH HOH A . B 2 HOH 17 41 41 HOH HOH A . B 2 HOH 18 42 42 HOH HOH A . B 2 HOH 19 45 45 HOH HOH A . B 2 HOH 20 46 46 HOH HOH A . B 2 HOH 21 49 49 HOH HOH A . B 2 HOH 22 50 50 HOH HOH A . B 2 HOH 23 51 51 HOH HOH A . B 2 HOH 24 52 52 HOH HOH A . B 2 HOH 25 53 53 HOH HOH A . B 2 HOH 26 54 54 HOH HOH A . B 2 HOH 27 55 55 HOH HOH A . B 2 HOH 28 57 57 HOH HOH A . B 2 HOH 29 58 58 HOH HOH A . B 2 HOH 30 59 59 HOH HOH A . B 2 HOH 31 60 60 HOH HOH A . B 2 HOH 32 61 61 HOH HOH A . B 2 HOH 33 62 62 HOH HOH A . B 2 HOH 34 63 63 HOH HOH A . B 2 HOH 35 67 67 HOH HOH A . B 2 HOH 36 69 69 HOH HOH A . B 2 HOH 37 73 73 HOH HOH A . B 2 HOH 38 80 80 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 4 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 CBASS . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 9 CNS . ? ? ? ? phasing ? ? ? # _cell.entry_id 3HG8 _cell.length_a 42.882 _cell.length_b 42.882 _cell.length_c 23.687 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HG8 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3HG8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'MPD,sodium cacodylate,spermine tetra-HCl, vapor diffusion, hanging drop, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC Q4' _diffrn_detector.pdbx_collection_date 2008-10-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3HG8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.380 _reflns.number_obs 4616 _reflns.number_all ? _reflns.percent_possible_obs 94.000 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.015 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.400 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.38 1.43 67.80 0.240 ? ? 5.20 ? ? ? ? ? ? ? 1 1.43 1.49 78.10 0.199 ? ? 6.30 ? ? ? ? ? ? ? 2 1.49 1.55 97.20 0.143 ? ? 7.70 ? ? ? ? ? ? ? 3 1.55 1.64 100.00 0.122 ? ? 9.40 ? ? ? ? ? ? ? 4 1.64 1.74 100.00 0.087 ? ? 9.40 ? ? ? ? ? ? ? 5 1.74 1.87 99.80 0.088 ? ? 9.50 ? ? ? ? ? ? ? 6 1.87 2.06 100.00 0.076 ? ? 9.30 ? ? ? ? ? ? ? 7 2.06 2.36 100.00 0.072 ? ? 9.20 ? ? ? ? ? ? ? 8 2.36 2.97 100.00 0.059 ? ? 9.00 ? ? ? ? ? ? ? 9 2.97 50.00 96.40 0.047 ? ? 7.90 ? ? ? ? ? ? ? 10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3HG8 _refine.ls_number_reflns_obs 4373 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.73 _refine.ls_d_res_high 1.38 _refine.ls_percent_reflns_obs 94.06 _refine.ls_R_factor_obs 0.18726 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18702 _refine.ls_R_factor_R_free 0.19236 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 216 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.80 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.B_iso_mean 12.430 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.064 _refine.pdbx_overall_ESU_R_Free 0.059 _refine.overall_SU_ML 0.033 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.849 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 163 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 201 _refine_hist.d_res_high 1.38 _refine_hist.d_res_low 20.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 178 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.116 3.000 ? 262 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.087 0.200 ? 30 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 81 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.477 0.200 ? 74 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.285 0.200 ? 100 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.111 0.200 ? 34 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.195 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.076 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.871 3.000 ? 253 'X-RAY DIFFRACTION' ? r_scangle_it 1.266 4.500 ? 262 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.380 _refine_ls_shell.d_res_low 1.416 _refine_ls_shell.number_reflns_R_work 215 _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.percent_reflns_obs 65.80 _refine_ls_shell.R_factor_R_free 0.222 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 14 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3HG8 _struct.title 'Crystal Structure of 5-SMe Derivatized DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HG8 _struct_keywords.text '5-SMe DNA, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3HG8 _struct_ref.pdbx_db_accession 3HG8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GUGUACAC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HG8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3HG8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1920 ? 1 MORE 8 ? 1 'SSA (A^2)' 2940 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A US2 4 P ? ? A DG 3 A US2 4 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale4 covale both ? A US2 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A US2 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.606 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A US2 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A US2 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A US2 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A US2 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A US2 4 N3 ? ? A DA 5 A US2 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A US2 4 O4 ? ? A DA 5 A US2 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 8 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 8 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 8 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.76 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.46 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A UMS 2 A UMS 2 ? DU ? 2 A US2 4 A US2 4 ? DU ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 UMS OP3 O N N 111 UMS P P N N 112 UMS OP1 O N N 113 UMS OP2 O N N 114 UMS "O5'" O N N 115 UMS "C5'" C N N 116 UMS "C4'" C N R 117 UMS "O4'" O N N 118 UMS "C3'" C N R 119 UMS "O3'" O N N 120 UMS "C2'" C N R 121 UMS "SE2'" SE N N 122 UMS "C1'" C N R 123 UMS "CA'" C N N 124 UMS N1 N N N 125 UMS C2 C N N 126 UMS O2 O N N 127 UMS N3 N N N 128 UMS C4 C N N 129 UMS O4 O N N 130 UMS C5 C N N 131 UMS C6 C N N 132 UMS HOP3 H N N 133 UMS HOP2 H N N 134 UMS "H5'" H N N 135 UMS "H5'2" H N N 136 UMS "H4'" H N N 137 UMS "H3'" H N N 138 UMS "HO3'" H N N 139 UMS "H2'" H N N 140 UMS "H1'" H N N 141 UMS "HA'" H N N 142 UMS "HA'2" H N N 143 UMS "HA'3" H N N 144 UMS H3 H N N 145 UMS H5 H N N 146 UMS H6 H N N 147 US2 P P N N 148 US2 N1 N N N 149 US2 C6 C N N 150 US2 C2 C N N 151 US2 O2 O N N 152 US2 N3 N N N 153 US2 C4 C N N 154 US2 O4 O N N 155 US2 C5 C N N 156 US2 S5 S N N 157 US2 C5A C N N 158 US2 "C1'" C N R 159 US2 "O4'" O N N 160 US2 "C4'" C N R 161 US2 "C3'" C N S 162 US2 "O3'" O N N 163 US2 "C2'" C N N 164 US2 "C5'" C N N 165 US2 "O5'" O N N 166 US2 O1P O N N 167 US2 O2P O N N 168 US2 H6 H N N 169 US2 HN3 H N N 170 US2 H15A H N N 171 US2 H25A H N N 172 US2 H35A H N N 173 US2 "H1'" H N N 174 US2 "H4'" H N N 175 US2 "H3'" H N N 176 US2 "HO3'" H N N 177 US2 "H12'" H N N 178 US2 "H22'" H N N 179 US2 "H15'" H N N 180 US2 "H25'" H N N 181 US2 O3P O N N 182 US2 HO2P H N N 183 US2 HO3P H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 UMS OP3 P sing N N 115 UMS OP3 HOP3 sing N N 116 UMS P OP1 doub N N 117 UMS P OP2 sing N N 118 UMS P "O5'" sing N N 119 UMS OP2 HOP2 sing N N 120 UMS "O5'" "C5'" sing N N 121 UMS "C5'" "C4'" sing N N 122 UMS "C5'" "H5'" sing N N 123 UMS "C5'" "H5'2" sing N N 124 UMS "C4'" "O4'" sing N N 125 UMS "C4'" "C3'" sing N N 126 UMS "C4'" "H4'" sing N N 127 UMS "O4'" "C1'" sing N N 128 UMS "C3'" "O3'" sing N N 129 UMS "C3'" "C2'" sing N N 130 UMS "C3'" "H3'" sing N N 131 UMS "O3'" "HO3'" sing N N 132 UMS "C2'" "SE2'" sing N N 133 UMS "C2'" "C1'" sing N N 134 UMS "C2'" "H2'" sing N N 135 UMS "SE2'" "CA'" sing N N 136 UMS "C1'" N1 sing N N 137 UMS "C1'" "H1'" sing N N 138 UMS "CA'" "HA'" sing N N 139 UMS "CA'" "HA'2" sing N N 140 UMS "CA'" "HA'3" sing N N 141 UMS N1 C2 sing N N 142 UMS N1 C6 sing N N 143 UMS C2 O2 doub N N 144 UMS C2 N3 sing N N 145 UMS N3 C4 sing N N 146 UMS N3 H3 sing N N 147 UMS C4 O4 doub N N 148 UMS C4 C5 sing N N 149 UMS C5 C6 doub N N 150 UMS C5 H5 sing N N 151 UMS C6 H6 sing N N 152 US2 P O2P sing N N 153 US2 N1 C6 sing N N 154 US2 N1 "C1'" sing N N 155 US2 C6 H6 sing N N 156 US2 C2 N1 sing N N 157 US2 O2 C2 doub N N 158 US2 N3 C4 sing N N 159 US2 N3 C2 sing N N 160 US2 N3 HN3 sing N N 161 US2 C4 C5 sing N N 162 US2 O4 C4 doub N N 163 US2 C5 S5 sing N N 164 US2 C5 C6 doub N N 165 US2 S5 C5A sing N N 166 US2 C5A H15A sing N N 167 US2 C5A H25A sing N N 168 US2 C5A H35A sing N N 169 US2 "C1'" "O4'" sing N N 170 US2 "C1'" "C2'" sing N N 171 US2 "C1'" "H1'" sing N N 172 US2 "O4'" "C4'" sing N N 173 US2 "C4'" "C3'" sing N N 174 US2 "C4'" "C5'" sing N N 175 US2 "C4'" "H4'" sing N N 176 US2 "C3'" "O3'" sing N N 177 US2 "C3'" "H3'" sing N N 178 US2 "O3'" "HO3'" sing N N 179 US2 "C2'" "C3'" sing N N 180 US2 "C2'" "H12'" sing N N 181 US2 "C2'" "H22'" sing N N 182 US2 "C5'" "H15'" sing N N 183 US2 "C5'" "H25'" sing N N 184 US2 "O5'" "C5'" sing N N 185 US2 "O5'" P sing N N 186 US2 O1P P doub N N 187 US2 P O3P sing N N 188 US2 O2P HO2P sing N N 189 US2 O3P HO3P sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3HG8 'a-form double helix' 3HG8 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.345 -0.113 -0.346 -19.699 -13.928 -2.574 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A UMS 2 1_555 A DA 7 7_555 -0.067 -0.100 0.142 -5.612 -11.295 2.449 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_555 -0.250 -0.231 0.268 -4.156 -13.783 -0.021 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A US2 4 1_555 A DA 5 7_555 -0.101 -0.185 0.438 -7.414 -10.267 -3.534 4 A_US24:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A US2 4 7_555 0.101 -0.185 0.438 7.414 -10.267 -3.534 5 A_DA5:US24_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_555 0.250 -0.231 0.268 4.156 -13.783 -0.021 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A UMS 2 7_555 0.067 -0.100 0.142 5.612 -11.295 2.449 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.345 -0.113 -0.346 19.699 -13.928 -2.574 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.526 -0.843 3.032 -2.856 13.229 30.491 -3.393 -1.333 2.412 23.741 5.125 33.294 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.732 -1.485 3.065 0.077 12.020 28.630 -4.747 -1.356 2.273 23.064 -0.148 31.002 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_555 A US2 4 1_555 A DA 5 7_555 -0.308 -1.869 3.326 -0.666 0.635 36.419 -3.078 0.399 3.299 1.015 1.065 36.430 3 AA_DG3US24:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A US2 4 1_555 A DA 5 7_555 A DA 5 1_555 A US2 4 7_555 0.000 -1.565 2.794 0.000 2.898 28.244 -3.745 0.000 2.624 5.918 0.000 28.390 4 AA_US24DA5:US24DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A US2 4 7_555 A DC 6 1_555 A DG 3 7_555 0.308 -1.869 3.326 0.666 0.635 36.419 -3.078 -0.399 3.299 1.015 -1.065 36.430 5 AA_DA5DC6:DG3US24_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.732 -1.485 3.065 -0.077 12.020 28.630 -4.747 1.356 2.273 23.064 0.148 31.002 6 AA_DC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.526 -0.843 3.032 2.856 13.229 30.491 -3.393 1.333 2.412 23.741 -5.125 33.294 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 3HG8 _atom_sites.fract_transf_matrix[1][1] 0.023320 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023320 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042217 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 29.197 18.988 -5.273 1.00 11.21 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 29.115 17.578 -5.026 1.00 9.20 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 30.359 17.047 -4.332 1.00 9.37 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 31.536 17.255 -5.147 1.00 9.05 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 30.717 17.748 -3.039 1.00 8.81 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 29.925 17.241 -1.919 1.00 9.58 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 32.199 17.433 -2.897 1.00 8.91 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 32.647 17.591 -4.341 1.00 9.37 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 33.050 18.964 -4.632 1.00 9.22 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 32.296 19.945 -5.235 1.00 9.84 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 32.922 21.084 -5.344 1.00 9.84 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 34.165 20.844 -4.769 1.00 9.22 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 35.276 21.703 -4.603 1.00 9.12 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 35.375 22.886 -4.947 1.00 10.25 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 36.343 21.070 -3.972 1.00 9.64 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 36.340 19.753 -3.559 1.00 9.86 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 37.459 19.302 -2.974 1.00 11.04 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 35.305 18.932 -3.714 1.00 9.58 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 34.257 19.543 -4.319 1.00 9.30 ? 1 DG A C4 1 HETATM 20 P P . UMS A 1 2 ? 29.426 18.151 -0.695 1.00 10.23 ? 2 UMS A P 1 HETATM 21 O OP1 . UMS A 1 2 ? 28.549 17.304 0.195 1.00 11.53 ? 2 UMS A OP1 1 HETATM 22 O OP2 . UMS A 1 2 ? 28.903 19.498 -1.199 1.00 11.37 ? 2 UMS A OP2 1 HETATM 23 O "O5'" . UMS A 1 2 ? 30.756 18.514 0.129 1.00 9.42 ? 2 UMS A "O5'" 1 HETATM 24 C "C5'" . UMS A 1 2 ? 31.434 17.474 0.821 1.00 9.60 ? 2 UMS A "C5'" 1 HETATM 25 C "C4'" . UMS A 1 2 ? 32.827 17.915 1.216 1.00 10.02 ? 2 UMS A "C4'" 1 HETATM 26 O "O4'" . UMS A 1 2 ? 33.596 18.358 0.097 1.00 9.77 ? 2 UMS A "O4'" 1 HETATM 27 C "C3'" . UMS A 1 2 ? 32.809 19.115 2.123 1.00 10.82 ? 2 UMS A "C3'" 1 HETATM 28 O "O3'" . UMS A 1 2 ? 32.438 18.711 3.502 1.00 12.74 ? 2 UMS A "O3'" 1 HETATM 29 C "C2'" . UMS A 1 2 ? 34.206 19.674 1.981 1.00 10.78 ? 2 UMS A "C2'" 1 HETATM 30 SE "SE2'" . UMS A 1 2 ? 35.471 18.594 3.062 0.80 11.99 ? 2 UMS A "SE2'" 1 HETATM 31 C "C1'" . UMS A 1 2 ? 34.445 19.445 0.498 1.00 9.59 ? 2 UMS A "C1'" 1 HETATM 32 C "CA'" . UMS A 1 2 ? 37.045 19.768 2.874 1.00 12.50 ? 2 UMS A "CA'" 1 HETATM 33 N N1 . UMS A 1 2 ? 34.115 20.614 -0.341 1.00 9.99 ? 2 UMS A N1 1 HETATM 34 C C2 . UMS A 1 2 ? 35.040 21.577 -0.529 1.00 9.93 ? 2 UMS A C2 1 HETATM 35 O O2 . UMS A 1 2 ? 36.157 21.505 0.024 1.00 10.75 ? 2 UMS A O2 1 HETATM 36 N N3 . UMS A 1 2 ? 34.772 22.650 -1.308 1.00 9.75 ? 2 UMS A N3 1 HETATM 37 C C4 . UMS A 1 2 ? 33.582 22.799 -1.932 1.00 9.60 ? 2 UMS A C4 1 HETATM 38 O O4 . UMS A 1 2 ? 33.374 23.809 -2.642 1.00 10.03 ? 2 UMS A O4 1 HETATM 39 C C5 . UMS A 1 2 ? 32.608 21.816 -1.762 1.00 10.40 ? 2 UMS A C5 1 HETATM 40 C C6 . UMS A 1 2 ? 32.913 20.720 -0.952 1.00 9.83 ? 2 UMS A C6 1 ATOM 41 P P . DG A 1 3 ? 31.695 19.667 4.545 1.00 18.19 ? 3 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 31.207 18.771 5.693 1.00 20.31 ? 3 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 30.605 20.601 3.951 1.00 19.59 ? 3 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 32.868 20.549 5.046 1.00 17.68 ? 3 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 32.833 21.954 4.991 1.00 15.43 ? 3 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? 34.254 22.464 4.938 1.00 14.92 ? 3 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? 34.747 22.332 3.587 1.00 13.73 ? 3 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? 34.369 23.938 5.235 1.00 13.80 ? 3 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? 34.471 24.196 6.674 1.00 14.02 ? 3 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? 35.600 24.345 4.437 1.00 12.93 ? 3 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? 35.426 23.503 3.182 1.00 11.30 ? 3 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? 34.642 24.138 2.126 1.00 10.93 ? 3 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? 33.418 23.749 1.630 1.00 10.39 ? 3 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? 32.974 24.515 0.672 1.00 10.49 ? 3 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? 33.973 25.473 0.515 1.00 9.82 ? 3 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? 34.069 26.579 -0.369 1.00 9.47 ? 3 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? 33.257 26.940 -1.228 1.00 10.02 ? 3 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? 35.253 27.300 -0.189 1.00 9.76 ? 3 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? 36.227 26.997 0.734 1.00 9.89 ? 3 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? 37.311 27.792 0.786 1.00 9.91 ? 3 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? 36.153 25.966 1.563 1.00 9.89 ? 3 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? 35.005 25.254 1.402 1.00 10.41 ? 3 DG A C4 1 HETATM 63 P P . US2 A 1 4 ? 34.001 25.558 7.372 1.00 14.39 ? 4 US2 A P 1 HETATM 64 N N1 . US2 A 1 4 ? 35.372 29.048 3.435 1.00 9.77 ? 4 US2 A N1 1 HETATM 65 C C6 . US2 A 1 4 ? 34.357 28.253 3.443 1.00 10.32 ? 4 US2 A C6 1 HETATM 66 C C2 . US2 A 1 4 ? 35.159 29.952 2.463 1.00 8.96 ? 4 US2 A C2 1 HETATM 67 O O2 . US2 A 1 4 ? 35.942 30.909 2.268 1.00 8.63 ? 4 US2 A O2 1 HETATM 68 N N3 . US2 A 1 4 ? 34.008 29.859 1.724 1.00 8.94 ? 4 US2 A N3 1 HETATM 69 C C4 . US2 A 1 4 ? 33.039 28.901 1.918 1.00 9.01 ? 4 US2 A C4 1 HETATM 70 O O4 . US2 A 1 4 ? 32.030 28.912 1.183 1.00 9.30 ? 4 US2 A O4 1 HETATM 71 C C5 . US2 A 1 4 ? 33.224 27.948 2.928 1.00 9.13 ? 4 US2 A C5 1 HETATM 72 S S5 . US2 A 1 4 ? 32.130 26.680 3.281 1.00 10.91 ? 4 US2 A S5 1 HETATM 73 C C5A . US2 A 1 4 ? 30.930 27.511 4.262 1.00 12.81 ? 4 US2 A C5A 1 HETATM 74 C "C1'" . US2 A 1 4 ? 36.618 29.041 4.216 1.00 10.06 ? 4 US2 A "C1'" 1 HETATM 75 O "O4'" . US2 A 1 4 ? 36.841 27.771 4.836 1.00 11.19 ? 4 US2 A "O4'" 1 HETATM 76 C "C4'" . US2 A 1 4 ? 36.915 27.937 6.252 1.00 10.89 ? 4 US2 A "C4'" 1 HETATM 77 C "C3'" . US2 A 1 4 ? 36.146 29.209 6.513 1.00 10.66 ? 4 US2 A "C3'" 1 HETATM 78 O "O3'" . US2 A 1 4 ? 36.441 29.831 7.806 1.00 10.57 ? 4 US2 A "O3'" 1 HETATM 79 C "C2'" . US2 A 1 4 ? 36.499 30.076 5.327 1.00 10.50 ? 4 US2 A "C2'" 1 HETATM 80 C "C5'" . US2 A 1 4 ? 36.321 26.746 6.978 1.00 11.63 ? 4 US2 A "C5'" 1 HETATM 81 O "O5'" . US2 A 1 4 ? 34.927 26.697 6.697 1.00 12.74 ? 4 US2 A "O5'" 1 HETATM 82 O O1P . US2 A 1 4 ? 32.563 25.853 7.070 1.00 13.25 ? 4 US2 A O1P 1 HETATM 83 O O2P . US2 A 1 4 ? 34.456 25.402 8.834 1.00 16.30 ? 4 US2 A O2P 1 ATOM 84 P P . DA A 1 5 ? 35.473 30.889 8.530 1.00 11.90 ? 5 DA A P 1 ATOM 85 O OP1 . DA A 1 5 ? 35.895 30.928 9.976 1.00 12.61 ? 5 DA A OP1 1 ATOM 86 O OP2 . DA A 1 5 ? 34.012 30.635 8.250 1.00 13.38 ? 5 DA A OP2 1 ATOM 87 O "O5'" . DA A 1 5 ? 35.908 32.260 7.840 1.00 9.43 ? 5 DA A "O5'" 1 ATOM 88 C "C5'" . DA A 1 5 ? 35.000 33.323 7.606 1.00 9.57 ? 5 DA A "C5'" 1 ATOM 89 C "C4'" . DA A 1 5 ? 35.544 34.168 6.474 1.00 8.39 ? 5 DA A "C4'" 1 ATOM 90 O "O4'" . DA A 1 5 ? 35.699 33.344 5.289 1.00 7.77 ? 5 DA A "O4'" 1 ATOM 91 C "C3'" . DA A 1 5 ? 34.652 35.322 6.051 1.00 8.70 ? 5 DA A "C3'" 1 ATOM 92 O "O3'" . DA A 1 5 ? 34.977 36.451 6.831 1.00 9.25 ? 5 DA A "O3'" 1 ATOM 93 C "C2'" . DA A 1 5 ? 35.035 35.502 4.592 1.00 8.02 ? 5 DA A "C2'" 1 ATOM 94 C "C1'" . DA A 1 5 ? 35.191 34.048 4.172 1.00 7.57 ? 5 DA A "C1'" 1 ATOM 95 N N9 . DA A 1 5 ? 33.966 33.375 3.723 1.00 7.34 ? 5 DA A N9 1 ATOM 96 C C8 . DA A 1 5 ? 33.335 32.315 4.322 1.00 7.34 ? 5 DA A C8 1 ATOM 97 N N7 . DA A 1 5 ? 32.275 31.898 3.685 1.00 6.77 ? 5 DA A N7 1 ATOM 98 C C5 . DA A 1 5 ? 32.210 32.734 2.578 1.00 7.20 ? 5 DA A C5 1 ATOM 99 C C6 . DA A 1 5 ? 31.309 32.807 1.495 1.00 7.06 ? 5 DA A C6 1 ATOM 100 N N6 . DA A 1 5 ? 30.269 31.982 1.359 1.00 8.14 ? 5 DA A N6 1 ATOM 101 N N1 . DA A 1 5 ? 31.524 33.761 0.559 1.00 6.77 ? 5 DA A N1 1 ATOM 102 C C2 . DA A 1 5 ? 32.566 34.596 0.701 1.00 7.14 ? 5 DA A C2 1 ATOM 103 N N3 . DA A 1 5 ? 33.482 34.616 1.675 1.00 7.56 ? 5 DA A N3 1 ATOM 104 C C4 . DA A 1 5 ? 33.247 33.653 2.585 1.00 7.26 ? 5 DA A C4 1 ATOM 105 P P . DC A 1 6 ? 33.835 37.463 7.308 1.00 10.01 ? 6 DC A P 1 ATOM 106 O OP1 . DC A 1 6 ? 34.520 38.542 8.072 1.00 11.65 ? 6 DC A OP1 1 ATOM 107 O OP2 . DC A 1 6 ? 32.724 36.710 7.898 1.00 10.92 ? 6 DC A OP2 1 ATOM 108 O "O5'" . DC A 1 6 ? 33.303 38.098 5.947 1.00 9.81 ? 6 DC A "O5'" 1 ATOM 109 C "C5'" . DC A 1 6 ? 34.123 38.991 5.204 1.00 9.94 ? 6 DC A "C5'" 1 ATOM 110 C "C4'" . DC A 1 6 ? 33.436 39.328 3.899 1.00 9.77 ? 6 DC A "C4'" 1 ATOM 111 O "O4'" . DC A 1 6 ? 33.275 38.126 3.109 1.00 9.09 ? 6 DC A "O4'" 1 ATOM 112 C "C3'" . DC A 1 6 ? 32.011 39.842 4.051 1.00 10.22 ? 6 DC A "C3'" 1 ATOM 113 O "O3'" . DC A 1 6 ? 31.979 41.213 4.443 1.00 12.67 ? 6 DC A "O3'" 1 ATOM 114 C "C2'" . DC A 1 6 ? 31.476 39.617 2.645 1.00 9.86 ? 6 DC A "C2'" 1 ATOM 115 C "C1'" . DC A 1 6 ? 32.064 38.237 2.375 1.00 8.98 ? 6 DC A "C1'" 1 ATOM 116 N N1 . DC A 1 6 ? 31.152 37.097 2.716 1.00 8.36 ? 6 DC A N1 1 ATOM 117 C C2 . DC A 1 6 ? 30.115 36.786 1.825 1.00 8.28 ? 6 DC A C2 1 ATOM 118 O O2 . DC A 1 6 ? 29.983 37.471 0.803 1.00 8.30 ? 6 DC A O2 1 ATOM 119 N N3 . DC A 1 6 ? 29.288 35.745 2.108 1.00 7.56 ? 6 DC A N3 1 ATOM 120 C C4 . DC A 1 6 ? 29.457 35.032 3.227 1.00 8.40 ? 6 DC A C4 1 ATOM 121 N N4 . DC A 1 6 ? 28.616 34.016 3.450 1.00 8.61 ? 6 DC A N4 1 ATOM 122 C C5 . DC A 1 6 ? 30.502 35.329 4.156 1.00 8.13 ? 6 DC A C5 1 ATOM 123 C C6 . DC A 1 6 ? 31.315 36.358 3.862 1.00 7.92 ? 6 DC A C6 1 ATOM 124 P P . DA A 1 7 ? 30.718 41.816 5.228 1.00 13.87 ? 7 DA A P 1 ATOM 125 O OP1 . DA A 1 7 ? 31.165 43.161 5.706 1.00 14.80 ? 7 DA A OP1 1 ATOM 126 O OP2 . DA A 1 7 ? 30.208 40.814 6.189 1.00 13.68 ? 7 DA A OP2 1 ATOM 127 O "O5'" . DA A 1 7 ? 29.679 41.980 4.068 1.00 11.80 ? 7 DA A "O5'" 1 ATOM 128 C "C5'" . DA A 1 7 ? 29.873 42.934 3.027 1.00 11.89 ? 7 DA A "C5'" 1 ATOM 129 C "C4'" . DA A 1 7 ? 28.694 42.842 2.084 1.00 11.33 ? 7 DA A "C4'" 1 ATOM 130 O "O4'" . DA A 1 7 ? 28.598 41.502 1.544 1.00 11.37 ? 7 DA A "O4'" 1 ATOM 131 C "C3'" . DA A 1 7 ? 27.357 43.066 2.762 1.00 11.25 ? 7 DA A "C3'" 1 ATOM 132 O "O3'" . DA A 1 7 ? 27.091 44.451 2.817 1.00 12.15 ? 7 DA A "O3'" 1 ATOM 133 C "C2'" . DA A 1 7 ? 26.376 42.326 1.868 1.00 10.43 ? 7 DA A "C2'" 1 ATOM 134 C "C1'" . DA A 1 7 ? 27.231 41.154 1.416 1.00 9.38 ? 7 DA A "C1'" 1 ATOM 135 N N9 . DA A 1 7 ? 27.061 39.889 2.127 1.00 8.57 ? 7 DA A N9 1 ATOM 136 C C8 . DA A 1 7 ? 27.805 39.403 3.173 1.00 8.48 ? 7 DA A C8 1 ATOM 137 N N7 . DA A 1 7 ? 27.421 38.214 3.579 1.00 8.24 ? 7 DA A N7 1 ATOM 138 C C5 . DA A 1 7 ? 26.368 37.890 2.730 1.00 8.46 ? 7 DA A C5 1 ATOM 139 C C6 . DA A 1 7 ? 25.527 36.756 2.627 1.00 8.48 ? 7 DA A C6 1 ATOM 140 N N6 . DA A 1 7 ? 25.643 35.689 3.423 1.00 8.48 ? 7 DA A N6 1 ATOM 141 N N1 . DA A 1 7 ? 24.564 36.766 1.670 1.00 8.62 ? 7 DA A N1 1 ATOM 142 C C2 . DA A 1 7 ? 24.449 37.837 0.871 1.00 8.67 ? 7 DA A C2 1 ATOM 143 N N3 . DA A 1 7 ? 25.180 38.956 0.867 1.00 9.36 ? 7 DA A N3 1 ATOM 144 C C4 . DA A 1 7 ? 26.128 38.918 1.831 1.00 8.60 ? 7 DA A C4 1 ATOM 145 P P . DC A 1 8 ? 26.212 45.061 3.976 1.00 13.09 ? 8 DC A P 1 ATOM 146 O OP1 . DC A 1 8 ? 26.240 46.537 3.795 1.00 14.21 ? 8 DC A OP1 1 ATOM 147 O OP2 . DC A 1 8 ? 26.650 44.488 5.268 1.00 14.45 ? 8 DC A OP2 1 ATOM 148 O "O5'" . DC A 1 8 ? 24.745 44.546 3.631 1.00 12.40 ? 8 DC A "O5'" 1 ATOM 149 C "C5'" . DC A 1 8 ? 24.090 45.069 2.472 1.00 13.26 ? 8 DC A "C5'" 1 ATOM 150 C "C4'" . DC A 1 8 ? 22.748 44.409 2.236 1.00 13.60 ? 8 DC A "C4'" 1 ATOM 151 O "O4'" . DC A 1 8 ? 22.948 42.973 2.143 1.00 12.98 ? 8 DC A "O4'" 1 ATOM 152 C "C3'" . DC A 1 8 ? 21.709 44.661 3.326 1.00 14.44 ? 8 DC A "C3'" 1 ATOM 153 O "O3'" . DC A 1 8 ? 20.463 44.981 2.719 1.00 17.41 ? 8 DC A "O3'" 1 ATOM 154 C "C2'" . DC A 1 8 ? 21.632 43.337 4.075 1.00 13.72 ? 8 DC A "C2'" 1 ATOM 155 C "C1'" . DC A 1 8 ? 22.044 42.320 3.009 1.00 12.57 ? 8 DC A "C1'" 1 ATOM 156 N N1 . DC A 1 8 ? 22.674 41.112 3.618 1.00 11.95 ? 8 DC A N1 1 ATOM 157 C C2 . DC A 1 8 ? 22.131 39.839 3.369 1.00 11.48 ? 8 DC A C2 1 ATOM 158 O O2 . DC A 1 8 ? 21.143 39.721 2.630 1.00 11.66 ? 8 DC A O2 1 ATOM 159 N N3 . DC A 1 8 ? 22.711 38.759 3.962 1.00 11.23 ? 8 DC A N3 1 ATOM 160 C C4 . DC A 1 8 ? 23.782 38.909 4.755 1.00 11.12 ? 8 DC A C4 1 ATOM 161 N N4 . DC A 1 8 ? 24.308 37.811 5.314 1.00 10.53 ? 8 DC A N4 1 ATOM 162 C C5 . DC A 1 8 ? 24.356 40.196 5.010 1.00 11.19 ? 8 DC A C5 1 ATOM 163 C C6 . DC A 1 8 ? 23.773 41.250 4.431 1.00 11.29 ? 8 DC A C6 1 HETATM 164 O O . HOH B 2 . ? 35.851 36.159 1.342 1.00 8.83 ? 20 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 23.940 41.435 -0.241 1.00 14.18 ? 22 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 26.127 47.812 1.468 1.00 13.94 ? 24 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 26.133 16.485 -0.735 1.00 13.68 ? 25 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 20.922 38.770 0.009 1.00 14.46 ? 27 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 31.360 25.824 -2.802 1.00 12.41 ? 28 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 30.045 31.054 5.013 1.00 22.75 ? 29 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 30.469 24.484 6.082 1.00 20.87 ? 30 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 28.448 19.661 -7.898 1.00 16.09 ? 31 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 27.361 16.965 -8.511 1.00 13.05 ? 32 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 17.921 38.593 -0.022 1.00 21.33 ? 34 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 41.604 18.357 -3.859 1.00 19.89 ? 35 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 38.885 16.927 -2.746 1.00 16.22 ? 36 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 30.500 24.484 -0.479 1.00 21.03 ? 37 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 24.580 15.515 1.370 1.00 23.37 ? 38 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 31.506 34.058 7.430 1.00 17.44 ? 40 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 25.894 42.750 7.029 1.00 21.92 ? 41 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 29.174 21.866 0.189 1.00 22.17 ? 42 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 31.386 22.848 -6.643 1.00 24.73 ? 45 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 28.090 16.920 2.642 1.00 24.28 ? 46 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 36.115 22.688 8.773 1.00 28.60 ? 49 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 31.883 31.931 8.949 1.00 23.02 ? 50 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 33.967 24.646 -6.307 1.00 19.95 ? 51 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 27.836 20.391 -3.401 1.00 24.46 ? 52 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 27.660 40.693 7.163 1.00 23.04 ? 53 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 33.531 35.645 10.422 1.00 22.07 ? 54 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 29.683 24.022 3.573 1.00 24.48 ? 55 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 28.931 33.317 6.498 1.00 31.40 ? 57 HOH A O 1 HETATM 192 O O . HOH B 2 . ? 27.979 36.718 5.977 1.00 21.26 ? 58 HOH A O 1 HETATM 193 O O . HOH B 2 . ? 31.408 15.830 5.330 1.00 20.45 ? 59 HOH A O 1 HETATM 194 O O . HOH B 2 . ? 28.274 29.992 3.032 1.00 26.02 ? 60 HOH A O 1 HETATM 195 O O . HOH B 2 . ? 30.301 37.974 7.585 1.00 28.54 ? 61 HOH A O 1 HETATM 196 O O . HOH B 2 . ? 29.397 28.268 1.172 1.00 24.50 ? 62 HOH A O 1 HETATM 197 O O . HOH B 2 . ? 28.833 15.018 4.315 1.00 24.84 ? 63 HOH A O 1 HETATM 198 O O . HOH B 2 . ? 28.974 45.107 6.386 1.00 30.75 ? 67 HOH A O 1 HETATM 199 O O . HOH B 2 . ? 32.437 28.561 7.473 1.00 31.59 ? 69 HOH A O 1 HETATM 200 O O . HOH B 2 . ? 37.300 21.595 6.282 1.00 33.78 ? 73 HOH A O 1 HETATM 201 O O . HOH B 2 . ? 31.565 25.187 10.518 1.00 37.67 ? 80 HOH A O 1 #