data_415D # _entry.id 415D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 415D RCSB UD0001 WWPDB D_1000179215 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2003-08-26 _pdbx_database_PDB_obs_spr.pdb_id 1O55 _pdbx_database_PDB_obs_spr.replace_pdb_id 415D _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 415D _pdbx_database_status.recvd_initial_deposition_date 1998-07-13 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Robinson, H.' 2 'Liaw, Y.-C.' 3 'van Boom, J.H.' 4 'van der Marel, G.A.' 5 'Wang, A.H.-J.' 6 # _citation.id primary _citation.title 'Molecular structure of two crystal forms of cyclic triadenylic acid at 1A resolution.' _citation.journal_abbrev J.Biomol.Struct.Dyn. _citation.journal_volume 16 _citation.page_first 69 _citation.page_last 76 _citation.year 1998 _citation.journal_id_ASTM JBSDD6 _citation.country US _citation.journal_id_ISSN 0739-1102 _citation.journal_id_CSD 0646 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9745896 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gao, Y.G.' 1 primary 'Robinson, H.' 2 primary 'Guan, Y.' 3 primary 'Liaw, Y.C.' 4 primary 'van Boom, J.H.' 5 primary 'van der Marel, G.A.' 6 primary 'Wang, A.H.' 7 # _cell.entry_id 415D _cell.length_a 22.637 _cell.length_b 22.637 _cell.length_c 44.581 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 415D _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 non-polymer man "ADENOSINE-5'-MONOPHOSPHATE" 347.221 2 ? ? ? ? 2 non-polymer syn 'COBALT ION,6 WATERS COORDINATED' 167.025 1 ? ? ? ? 3 water nat water 18.015 17 ? ? ? ? # _entity_keywords.entity_id 1 _entity_keywords.text 'CYCLIC TRINUCLEOTIDE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 OCO non-polymer . 'COBALT ION,6 WATERS COORDINATED' ? 'Co H12 O6 3' 167.025 # _exptl.entry_id 415D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.67 _exptl_crystal.density_percent_sol 26.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 COCL3 ? ? ? 1 2 1 GLYCINE ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1997-12-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 415D _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F 0.000 _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 1.040 _reflns.number_obs 2198 _reflns.number_all 2198 _reflns.percent_possible_obs 95.400 _reflns.pdbx_Rmerge_I_obs 0.0440000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.500 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _refine.entry_id 415D _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 2198 _refine.pdbx_ls_sigma_I 0.00 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.040 _refine.ls_percent_reflns_obs 97.200 _refine.ls_R_factor_obs 0.1380000 _refine.ls_R_factor_all 0.1440000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 42 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 66 _refine_hist.d_res_high 1.040 _refine_hist.d_res_low 10.000 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 415D _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1380000 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 415D _struct.title 'MOLECULAR STRUCTURE OF TWO CRYSTAL FORMS OF CYCLIC TRIADENYLIC ACID AT 1 ANGSTROM RESOLUTION' _struct.pdbx_descriptor "5'-CD(*AP*AP*AP)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 415D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'CYCLIC TRINUCLEOTIDE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? # loop_ _struct_biol.id 1 2 # _database_PDB_matrix.entry_id 415D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 415D _atom_sites.fract_transf_matrix[1][1] 0.044175 _atom_sites.fract_transf_matrix[1][2] 0.025505 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.051009 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022431 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 P P . A A 1 . ? -2.673 15.931 2.686 1.00 8.71 ? 2 A A P 1 HETATM 2 N N9 . A A 1 . ? -6.055 12.116 2.463 1.00 12.00 ? 2 A A N9 1 HETATM 3 C C8 . A A 1 . ? -6.444 13.437 2.464 1.00 10.73 ? 2 A A C8 1 HETATM 4 N N7 . A A 1 . ? -7.630 13.567 1.906 1.00 12.95 ? 2 A A N7 1 HETATM 5 C C5 . A A 1 . ? -8.048 12.257 1.610 1.00 20.27 ? 2 A A C5 1 HETATM 6 C C6 . A A 1 . ? -9.237 11.718 1.040 1.00 9.40 ? 2 A A C6 1 HETATM 7 N N6 . A A 1 . ? -10.256 12.531 0.731 1.00 23.48 ? 2 A A N6 1 HETATM 8 N N1 . A A 1 . ? -9.313 10.383 0.871 1.00 12.79 ? 2 A A N1 1 HETATM 9 C C2 . A A 1 . ? -8.264 9.611 1.247 1.00 11.95 ? 2 A A C2 1 HETATM 10 N N3 . A A 1 . ? -7.106 10.006 1.789 1.00 9.28 ? 2 A A N3 1 HETATM 11 C C4 . A A 1 . ? -7.069 11.338 1.902 1.00 9.20 ? 2 A A C4 1 HETATM 12 O O1P . A A 1 . ? -3.818 16.500 3.449 1.00 10.67 ? 2 A A O1P 1 HETATM 13 O O2P . A A 1 . ? -2.651 16.207 1.202 1.00 10.10 ? 2 A A O2P 1 HETATM 14 O O5* . A A 1 . ? -2.681 14.391 2.826 1.00 7.27 ? 2 A A O5* 1 HETATM 15 C C5* . A A 1 . ? -2.535 13.860 4.152 1.00 8.93 ? 2 A A C5* 1 HETATM 16 C C4* . A A 1 . ? -2.988 12.420 4.133 1.00 9.96 ? 2 A A C4* 1 HETATM 17 O O4* . A A 1 . ? -4.433 12.456 4.078 1.00 10.18 ? 2 A A O4* 1 HETATM 18 C C3* . A A 1 . ? -2.480 11.585 2.936 1.00 7.06 ? 2 A A C3* 1 HETATM 19 O O3* . A A 1 . ? -2.259 10.226 3.409 1.00 9.04 ? 2 A A O3* 1 HETATM 20 C C2* . A A 1 . ? -3.700 11.581 2.032 1.00 7.56 ? 2 A A C2* 1 HETATM 21 C C1* . A A 1 . ? -4.836 11.568 3.013 1.00 9.44 ? 2 A A C1* 1 HETATM 22 P P . A B 1 . ? -1.786 3.601 5.863 1.00 7.32 ? 5 A B P 1 HETATM 23 N N9 . A B 1 . ? -5.892 1.018 5.249 1.00 7.20 ? 5 A B N9 1 HETATM 24 C C8 . A B 1 . ? -5.465 2.153 4.606 1.00 8.40 ? 5 A B C8 1 HETATM 25 N N7 . A B 1 . ? -6.460 2.933 4.270 1.00 8.44 ? 5 A B N7 1 HETATM 26 C C5 . A B 1 . ? -7.613 2.282 4.677 1.00 7.36 ? 5 A B C5 1 HETATM 27 C C6 . A B 1 . ? -8.957 2.569 4.553 1.00 6.27 ? 5 A B C6 1 HETATM 28 N N6 . A B 1 . ? -9.416 3.715 4.006 1.00 7.57 ? 5 A B N6 1 HETATM 29 N N1 . A B 1 . ? -9.843 1.678 5.019 1.00 6.39 ? 5 A B N1 1 HETATM 30 C C2 . A B 1 . ? -9.350 0.527 5.551 1.00 8.05 ? 5 A B C2 1 HETATM 31 N N3 . A B 1 . ? -8.116 0.099 5.722 1.00 5.91 ? 5 A B N3 1 HETATM 32 C C4 . A B 1 . ? -7.262 1.065 5.277 1.00 7.58 ? 5 A B C4 1 HETATM 33 O O1P . A B 1 . ? -2.580 4.507 6.733 1.00 8.81 ? 5 A B O1P 1 HETATM 34 O O2P . A B 1 . ? -1.802 3.860 4.388 1.00 9.02 ? 5 A B O2P 1 HETATM 35 O O5* . A B 1 . ? -2.198 2.076 6.022 1.00 7.33 ? 5 A B O5* 1 HETATM 36 C C5* . A B 1 . ? -2.270 1.424 7.335 1.00 6.64 ? 5 A B C5* 1 HETATM 37 C C4* . A B 1 . ? -3.116 0.182 7.225 1.00 7.03 ? 5 A B C4* 1 HETATM 38 O O4* . A B 1 . ? -4.497 0.579 7.092 1.00 7.00 ? 5 A B O4* 1 HETATM 39 C C3* . A B 1 . ? -2.812 -0.717 6.053 1.00 6.39 ? 5 A B C3* 1 HETATM 40 O O3* . A B 1 . ? -2.965 -2.084 6.561 1.00 7.31 ? 5 A B O3* 1 HETATM 41 C C2* . A B 1 . ? -3.888 -0.436 5.041 1.00 8.37 ? 5 A B C2* 1 HETATM 42 C C1* . A B 1 . ? -5.034 0.030 5.895 1.00 7.66 ? 5 A B C1* 1 HETATM 43 CO CO . OCO C 2 . ? -5.050 6.966 4.083 1.00 15.61 ? 7 OCO ? CO 1 HETATM 44 O O1 . OCO C 2 . ? -6.777 7.616 4.825 1.00 9.95 ? 7 OCO ? O1 1 HETATM 45 O O2 . OCO C 2 . ? -3.145 6.249 3.447 1.00 9.64 ? 7 OCO ? O2 1 HETATM 46 O O3 . OCO C 2 . ? -4.815 5.806 5.786 1.00 10.38 ? 7 OCO ? O3 1 HETATM 47 O O4 . OCO C 2 . ? -4.166 8.681 4.914 1.00 12.04 ? 7 OCO ? O4 1 HETATM 48 O O5 . OCO C 2 . ? -5.234 7.988 2.292 1.00 9.54 ? 7 OCO ? O5 1 HETATM 49 O O6 . OCO C 2 . ? -5.993 5.422 3.082 1.00 8.82 ? 7 OCO ? O6 1 HETATM 50 O O . HOH D 3 . ? -11.319 6.535 4.942 0.33 7.66 ? 101 HOH ? O 1 HETATM 51 O O . HOH D 3 . ? -8.936 6.711 3.282 1.00 9.43 ? 102 HOH ? O 1 HETATM 52 O O . HOH D 3 . ? 0.000 13.069 0.654 0.33 13.17 ? 103 HOH ? O 1 HETATM 53 O O . HOH D 3 . ? -1.831 14.584 -0.716 1.00 13.18 ? 104 HOH ? O 1 HETATM 54 O O . HOH D 3 . ? -8.692 -1.985 7.430 0.25 6.90 ? 105 HOH ? O 1 HETATM 55 O O . HOH D 3 . ? 0.000 0.000 3.726 0.33 13.05 ? 106 HOH ? O 1 HETATM 56 O O . HOH D 3 . ? -2.865 4.962 0.000 0.50 19.28 ? 107 HOH ? O 1 HETATM 57 O O . HOH D 3 . ? -4.212 8.817 7.443 1.00 28.37 ? 108 HOH ? O 1 HETATM 58 O O . HOH D 3 . ? -10.284 15.425 1.025 1.00 47.55 ? 109 HOH ? O 1 HETATM 59 O O . HOH D 3 . ? -6.735 -2.957 5.625 0.50 24.86 ? 110 HOH ? O 1 HETATM 60 O O . HOH D 3 . ? -5.438 3.650 7.430 0.50 21.37 ? 111 HOH ? O 1 HETATM 61 O O . HOH D 3 . ? -6.575 17.108 2.483 1.00 27.85 ? 112 HOH ? O 1 HETATM 62 O O . HOH D 3 . ? -12.807 12.290 0.507 0.50 15.55 ? 113 HOH ? O 1 HETATM 63 O O . HOH D 3 . ? -2.772 18.545 0.209 0.50 14.79 ? 114 HOH ? O 1 HETATM 64 O O . HOH D 3 . ? -1.936 1.716 2.828 1.00 30.81 ? 115 HOH ? O 1 HETATM 65 O O . HOH D 3 . ? -3.878 3.518 2.619 1.00 44.66 ? 116 HOH ? O 1 HETATM 66 O O . HOH D 3 . ? -1.260 10.887 7.430 0.25 13.33 ? 117 HOH ? O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 P P . A A . ? 0.1230 0.0972 0.1106 0.0175 0.0089 -0.0114 2 A A P 2 N N9 . A A . ? 0.1840 0.1686 0.1032 0.0047 0.0434 0.0257 2 A A N9 3 C C8 . A A . ? 0.1540 0.1531 0.1007 0.0137 0.0024 0.0168 2 A A C8 4 N N7 . A A . ? 0.1612 0.2507 0.0801 0.0065 0.0408 0.0257 2 A A N7 5 C C5 . A A . ? 0.1650 0.5416 0.0634 0.0236 0.0404 0.1208 2 A A C5 6 C C6 . A A . ? 0.0748 0.1989 0.0836 0.0029 0.0166 0.0211 2 A A C6 7 N N6 . A A . ? 0.2473 0.5099 0.1349 0.2809 0.0740 0.1409 2 A A N6 8 N N1 . A A . ? 0.1056 0.2930 0.0873 -0.0187 -0.0215 0.0025 2 A A N1 9 C C2 . A A . ? 0.1613 0.1378 0.1549 -0.0197 -0.0778 0.0324 2 A A C2 10 N N3 . A A . ? 0.1410 0.1229 0.0888 -0.0035 0.0045 0.0276 2 A A N3 11 C C4 . A A . ? 0.1017 0.1349 0.1131 0.0619 0.0388 0.0651 2 A A C4 12 O O1P . A A . ? 0.1106 0.1424 0.1525 0.0165 0.0513 -0.0460 2 A A O1P 13 O O2P . A A . ? 0.1720 0.0999 0.1119 0.0277 0.0019 0.0054 2 A A O2P 14 O O5* . A A . ? 0.1100 0.0854 0.0807 -0.0121 0.0078 -0.0071 2 A A O5* 15 C C5* . A A . ? 0.1127 0.1159 0.1106 -0.0141 -0.0004 -0.0069 2 A A C5* 16 C C4* . A A . ? 0.1216 0.1566 0.1003 -0.0563 -0.0052 0.0034 2 A A C4* 17 O O4* . A A . ? 0.1370 0.1787 0.0711 -0.0394 0.0102 0.0188 2 A A O4* 18 C C3* . A A . ? 0.0995 0.1084 0.0603 0.0049 0.0113 0.0076 2 A A C3* 19 O O3* . A A . ? 0.1151 0.1195 0.1088 -0.0120 0.0042 0.0318 2 A A O3* 20 C C2* . A A . ? 0.1099 0.0871 0.0904 0.0010 0.0342 -0.0020 2 A A C2* 21 C C1* . A A . ? 0.0703 0.1509 0.1373 -0.0077 -0.0352 0.0230 2 A A C1* 22 P P . A B . ? 0.0829 0.0767 0.1183 0.0023 0.0028 -0.0033 5 A B P 23 N N9 . A B . ? 0.0888 0.0681 0.1165 -0.0290 -0.0265 0.0226 5 A B N9 24 C C8 . A B . ? 0.0876 0.0994 0.1322 0.0026 -0.0242 0.0457 5 A B C8 25 N N7 . A B . ? 0.1125 0.1002 0.1079 -0.0234 -0.0164 0.0302 5 A B N7 26 C C5 . A B . ? 0.1416 0.0680 0.0699 -0.0271 -0.0132 0.0164 5 A B C5 27 C C6 . A B . ? 0.0974 0.0759 0.0649 0.0014 -0.0262 -0.0078 5 A B C6 28 N N6 . A B . ? 0.0898 0.1039 0.0939 0.0113 -0.0042 0.0002 5 A B N6 29 N N1 . A B . ? 0.0704 0.0719 0.1004 0.0080 0.0022 0.0126 5 A B N1 30 C C2 . A B . ? 0.1278 0.0961 0.0821 -0.0386 0.0399 -0.0273 5 A B C2 31 N N3 . A B . ? 0.0590 0.0645 0.1012 -0.0149 -0.0051 -0.0055 5 A B N3 32 C C4 . A B . ? 0.1260 0.0703 0.0917 0.0093 -0.0403 -0.0172 5 A B C4 33 O O1P . A B . ? 0.0855 0.0988 0.1503 0.0022 -0.0091 0.0016 5 A B O1P 34 O O2P . A B . ? 0.1519 0.1013 0.0895 0.0092 0.0041 0.0239 5 A B O2P 35 O O5* . A B . ? 0.0836 0.0830 0.1121 -0.0121 0.0044 -0.0046 5 A B O5* 36 C C5* . A B . ? 0.0899 0.1026 0.0596 -0.0111 -0.0005 0.0126 5 A B C5* 37 C C4* . A B . ? 0.0676 0.1279 0.0718 0.0094 -0.0052 0.0141 5 A B C4* 38 O O4* . A B . ? 0.0846 0.0962 0.0851 0.0111 0.0047 0.0028 5 A B O4* 39 C C3* . A B . ? 0.0978 0.0540 0.0909 -0.0126 0.0165 0.0052 5 A B C3* 40 O O3* . A B . ? 0.0791 0.0960 0.1028 -0.0092 0.0035 0.0071 5 A B O3* 41 C C2* . A B . ? 0.1182 0.0993 0.1006 -0.0008 -0.0329 0.0169 5 A B C2* 42 C C1* . A B . ? 0.0757 0.0853 0.1300 0.0250 0.0237 0.0295 5 A B C1* 43 CO CO . OCO C . ? 0.1799 0.1642 0.2491 0.0139 0.0125 0.0322 7 OCO ? CO 44 O O1 . OCO C . ? 0.0838 0.0986 0.1956 0.0072 0.0162 0.0263 7 OCO ? O1 45 O O2 . OCO C . ? 0.0925 0.1121 0.1616 -0.0004 0.0318 0.0029 7 OCO ? O2 46 O O3 . OCO C . ? 0.1182 0.1163 0.1598 -0.0132 -0.0071 0.0313 7 OCO ? O3 47 O O4 . OCO C . ? 0.1417 0.1258 0.1901 -0.0391 0.0361 -0.0468 7 OCO ? O4 48 O O5 . OCO C . ? 0.1328 0.1071 0.1226 -0.0092 0.0033 0.0152 7 OCO ? O5 49 O O6 . OCO C . ? 0.1143 0.1021 0.1189 -0.0258 -0.0033 0.0106 7 OCO ? O6 50 O O . HOH D . ? 0.1190 0.1190 0.0530 0.0000 0.0000 0.0000 101 HOH ? O 51 O O . HOH D . ? 0.1343 0.0964 0.1275 -0.0257 0.0270 -0.0325 102 HOH ? O 52 O O . HOH D . ? 0.1945 0.1945 0.1114 0.0000 0.0000 0.0000 103 HOH ? O 53 O O . HOH D . ? 0.2190 0.1748 0.1070 0.0165 -0.0131 0.0165 104 HOH ? O 54 O O . HOH D . ? 0.0879 0.0676 0.1067 -0.0175 -0.0443 0.0256 105 HOH ? O 55 O O . HOH D . ? 0.1803 0.1803 0.1351 0.0000 0.0000 0.0000 106 HOH ? O 56 O O . HOH D . ? 0.2922 0.2203 0.2199 -0.0622 -0.0706 0.0408 107 HOH ? O 57 O O . HOH D . ? 0.6333 0.3755 0.0693 -0.1318 0.0132 -0.0140 108 HOH ? O 58 O O . HOH D . ? 0.7563 0.7523 0.2982 -0.4078 0.2498 -0.2031 109 HOH ? O 59 O O . HOH D . ? 0.4224 0.1292 0.3928 -0.1557 -0.3514 0.1664 110 HOH ? O 60 O O . HOH D . ? 0.2174 0.2590 0.3354 0.0360 -0.0203 0.0118 111 HOH ? O 61 O O . HOH D . ? 0.4073 0.2512 0.3998 0.0731 -0.2706 -0.0328 112 HOH ? O 62 O O . HOH D . ? 0.4201 0.1106 0.0601 -0.0682 0.0074 -0.0214 113 HOH ? O 63 O O . HOH D . ? 0.2736 0.1272 0.1613 0.0417 0.0837 0.0058 114 HOH ? O 64 O O . HOH D . ? 0.3697 0.3484 0.4527 0.0224 0.0882 0.2023 115 HOH ? O 65 O O . HOH D . ? 0.9530 0.2228 0.5212 -0.0022 -0.5054 -0.0344 116 HOH ? O 66 O O . HOH D . ? 0.2233 0.1673 0.1161 -0.0484 -0.0018 0.0011 117 HOH ? O # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code A 1 A 1 2 2 A A A . B 1 A 1 5 5 A A B . C 2 OCO 1 7 7 OCO OCO ? . D 3 HOH 1 101 101 HOH HOH ? . D 3 HOH 2 102 102 HOH HOH ? . D 3 HOH 3 103 103 HOH HOH ? . D 3 HOH 4 104 104 HOH HOH ? . D 3 HOH 5 105 105 HOH HOH ? . D 3 HOH 6 106 106 HOH HOH ? . D 3 HOH 7 107 107 HOH HOH ? . D 3 HOH 8 108 108 HOH HOH ? . D 3 HOH 9 109 109 HOH HOH ? . D 3 HOH 10 110 110 HOH HOH ? . D 3 HOH 11 111 111 HOH HOH ? . D 3 HOH 12 112 112 HOH HOH ? . D 3 HOH 13 113 113 HOH HOH ? . D 3 HOH 14 114 114 HOH HOH ? . D 3 HOH 15 115 115 HOH HOH ? . D 3 HOH 16 116 116 HOH HOH ? . D 3 HOH 17 117 117 HOH HOH ? . # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 . HOH 101 ? D HOH . 2 1 . HOH 103 ? D HOH . 3 1 . HOH 105 ? D HOH . 4 1 . HOH 106 ? D HOH . 5 1 . HOH 107 ? D HOH . 6 1 . HOH 111 ? D HOH . 7 1 . HOH 117 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-22 2 'Structure model' 1 1 2003-08-26 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.classification _software.name _software.version _software.citation_id _software.pdbx_ordinal 'data collection' BIOTEX . ? 1 phasing SHELXS . ? 2 refinement SHELXL-97 . ? 3 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 P A A 2 ? ? 1_555 O3* A A 2 ? ? 3_565 1.61 2 1 P B A 5 ? ? 1_555 O3* B A 5 ? ? 3_555 1.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A A 2 ? OP3 ? A A 1 OP3 2 1 N 1 A A 2 ? OP1 ? A A 1 OP1 3 1 N 1 A A 2 ? OP2 ? A A 1 OP2 4 1 N 1 A A 2 ? "O5'" ? A A 1 "O5'" 5 1 N 1 A A 2 ? "C5'" ? A A 1 "C5'" 6 1 N 1 A A 2 ? "C4'" ? A A 1 "C4'" 7 1 N 1 A A 2 ? "O4'" ? A A 1 "O4'" 8 1 N 1 A A 2 ? "C3'" ? A A 1 "C3'" 9 1 N 1 A A 2 ? "O3'" ? A A 1 "O3'" 10 1 N 1 A A 2 ? "C2'" ? A A 1 "C2'" 11 1 N 1 A A 2 ? "O2'" ? A A 1 "O2'" 12 1 N 1 A A 2 ? "C1'" ? A A 1 "C1'" 13 1 N 1 B A 5 ? OP3 ? B A 1 OP3 14 1 N 1 B A 5 ? OP1 ? B A 1 OP1 15 1 N 1 B A 5 ? OP2 ? B A 1 OP2 16 1 N 1 B A 5 ? "O5'" ? B A 1 "O5'" 17 1 N 1 B A 5 ? "C5'" ? B A 1 "C5'" 18 1 N 1 B A 5 ? "C4'" ? B A 1 "C4'" 19 1 N 1 B A 5 ? "O4'" ? B A 1 "O4'" 20 1 N 1 B A 5 ? "C3'" ? B A 1 "C3'" 21 1 N 1 B A 5 ? "O3'" ? B A 1 "O3'" 22 1 N 1 B A 5 ? "C2'" ? B A 1 "C2'" 23 1 N 1 B A 5 ? "O2'" ? B A 1 "O2'" 24 1 N 1 B A 5 ? "C1'" ? B A 1 "C1'" # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 1 "ADENOSINE-5'-MONOPHOSPHATE" A 2 'COBALT ION,6 WATERS COORDINATED' OCO 3 water HOH #