0.040584 0.000000 0.000000 0.000000 0.025233 0.000000 0.000000 0.000000 0.015260 0.000000 0.000000 0.000000 Tereshko, V. Minasov, G. Egli, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 24.640 39.630 65.530 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C10 H14 F N2 O8 P 340.199 n 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N MG N 148 N P N 149 N O N 150 N O N 151 N O N 152 N O N 153 N N N 154 N C N 155 N C N 156 N O N 157 N N N 158 N C N 159 N O N 160 N C N 161 N C N 162 N F N 163 S C N 164 N C N 165 R C N 166 N O N 167 R C N 168 R C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 121 470 471 -1 The Dickerson-Drew B-DNA Dodecamer Revisited-At Atomic Resolution 1999 10.2210/pdb436d/pdb pdb_0000436d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1998-02-02 MARRESEARCH MIRRORS SINGLE WAVELENGTH M x-ray 1 0.97800 1.0 14-BM-C APS 0.97800 SYNCHROTRON APS BEAMLINE 14-BM-C 3681.383 5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3' 2 syn polymer 24.305 MAGNESIUM ION 5 syn non-polymer 18.015 water 231 nat water no yes (DC)(DG)(DC)(DG)(DA)(DA)(TAF)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 1 2.08 40.93 VAPOR DIFFUSION, SITTING DROP 7.0 SODIUM CACODYLATE, MAGNESIUM ACETATE, SPERMINE; PRECIPITANT: MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 SODIUM CACODYLATE 1 MAGNESIUM ACETATE 1 SPERMINE 1 MPD 2 5.050 1 19 A 1 B 24 1.458 A_DC1:DG24_B 1 -18.289 0.164 0.125 -0.151 1.742 1 19 A 2 B 23 -4.054 A_DG2:DC23_B 2 -3.560 -0.163 0.141 -0.150 -2.709 1 19 A 3 B 22 -0.331 A_DC3:DG22_B 3 -6.041 0.169 0.244 -0.137 14.571 1 19 A 4 B 21 -0.208 A_DG4:DC21_B 4 -6.192 -0.190 0.076 -0.053 6.828 1 20 A 5 B 20 0.881 A_DA5:DT20_B 5 -16.091 0.057 -0.098 -0.138 5.642 1 20 A 6 B 19 4.371 A_DA6:TAF19_B 6 -17.202 0.048 0.250 -0.106 -1.787 1 20 A 7 B 18 4.139 A_TAF7:DA18_B 7 -18.398 -0.010 0.183 -0.125 -0.309 1 20 A 8 B 17 1.719 A_DT8:DA17_B 8 -14.739 -0.090 -0.132 -0.164 -14.843 1 19 A 9 B 16 -0.863 A_DC9:DG16_B 9 -8.829 0.274 0.176 -0.110 7.384 1 19 A 10 B 15 3.594 A_DG10:DC15_B 10 -4.879 -0.087 0.443 -0.091 5.968 1 19 A 11 B 14 -0.828 A_DC11:DG14_B 11 -15.244 0.081 0.171 -0.138 8.145 1 19 A 12 B 13 -3.104 A_DG12:DC13_B 12 26.308 -0.640 -0.684 -0.215 3.340 34.635 A A 1 2 7.181 B B 24 23 3.347 4.265 -0.438 0.147 AA_DC1DG2:DC23DG24_BB 1 0.057 -0.095 34.379 -0.427 0.745 3.415 41.841 A A 2 3 -2.569 B B 23 22 3.448 -1.834 0.823 0.515 AA_DG2DC3:DG22DC23_BB 2 -0.425 0.595 41.801 0.923 -1.199 3.007 27.294 A A 3 4 21.157 B B 22 21 3.029 9.755 -0.365 0.625 AA_DC3DG4:DC21DG22_BB 3 2.599 -5.637 25.391 -1.004 1.393 3.413 40.371 A A 4 5 5.035 B B 21 20 3.434 3.471 -0.093 -0.074 AA_DG4DA5:DT20DC21_BB 4 0.921 -1.336 40.218 -0.516 0.243 3.141 35.101 A A 5 6 0.769 B B 20 19 3.177 0.463 0.221 -0.482 AA_DA5DA6:TAF19DT20_BB 5 -3.051 5.065 34.969 -0.866 -0.808 3.411 30.025 A A 6 7 -3.022 B B 19 18 3.378 -1.565 -0.098 -0.779 AA_DA6TAF7:DA18TAF19_BB 6 0.450 -0.869 29.982 -1.169 0.286 3.088 36.174 A A 7 8 -2.668 B B 18 17 3.101 -1.653 -0.098 -0.337 AA_TAF7DT8:DA17DA18_BB 7 3.709 -5.985 35.953 -0.321 0.654 3.582 43.644 A A 8 9 -1.298 B B 17 16 3.577 -0.964 -0.153 -0.143 AA_DT8DC9:DG16DA17_BB 8 -1.557 2.095 43.607 -0.091 0.043 2.804 27.151 A A 9 10 2.593 B B 16 15 2.918 1.212 0.696 0.675 AA_DC9DG10:DC15DG16_BB 9 -4.230 9.049 26.799 1.170 -2.421 3.257 45.280 A A 10 11 -13.856 B B 15 14 3.413 -10.576 -1.332 0.555 AA_DG10DC11:DG14DC15_BB 10 -1.979 2.592 44.049 1.695 1.548 3.498 33.730 A A 11 12 -24.897 B B 14 13 3.774 -13.972 1.353 0.275 AA_DC11DG12:DC13DG14_BB 11 5.258 -9.369 30.333 3.140 -1.329 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1998-11-25 1 1 2008-04-26 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NDB Y NDB 1998-11-12 REL REL MG MAGNESIUM ION HOH water MG 25 2 MG MG 25 A MG 51 2 MG MG 51 A MG 32 2 MG MG 32 B MG 38 2 MG MG 38 B MG 45 2 MG MG 45 B HOH 26 3 HOH HOH 26 A HOH 28 3 HOH HOH 28 A HOH 40 3 HOH HOH 40 A HOH 43 3 HOH HOH 43 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 57 3 HOH HOH 57 A HOH 59 3 HOH HOH 59 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A HOH 62 3 HOH HOH 62 A HOH 63 3 HOH HOH 63 A HOH 64 3 HOH HOH 64 A HOH 65 3 HOH HOH 65 A HOH 67 3 HOH HOH 67 A HOH 68 3 HOH HOH 68 A HOH 76 3 HOH HOH 76 A HOH 78 3 HOH HOH 78 A HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 117 3 HOH HOH 117 A HOH 118 3 HOH HOH 118 A HOH 120 3 HOH HOH 120 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 146 3 HOH HOH 146 A HOH 147 3 HOH HOH 147 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 160 3 HOH HOH 160 A HOH 162 3 HOH HOH 162 A HOH 165 3 HOH HOH 165 A HOH 166 3 HOH HOH 166 A HOH 168 3 HOH HOH 168 A HOH 171 3 HOH HOH 171 A HOH 173 3 HOH HOH 173 A HOH 174 3 HOH HOH 174 A HOH 177 3 HOH HOH 177 A HOH 179 3 HOH HOH 179 A HOH 180 3 HOH HOH 180 A HOH 182 3 HOH HOH 182 A HOH 184 3 HOH HOH 184 A HOH 185 3 HOH HOH 185 A HOH 196 3 HOH HOH 196 A HOH 198 3 HOH HOH 198 A HOH 203 3 HOH HOH 203 A HOH 206 3 HOH HOH 206 A HOH 208 3 HOH HOH 208 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 229 3 HOH HOH 229 A HOH 232 3 HOH HOH 232 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 239 3 HOH HOH 239 A HOH 243 3 HOH HOH 243 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 256 3 HOH HOH 256 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 280 3 HOH HOH 280 A HOH 27 3 HOH HOH 27 B HOH 29 3 HOH HOH 29 B HOH 30 3 HOH HOH 30 B HOH 31 3 HOH HOH 31 B HOH 33 3 HOH HOH 33 B HOH 34 3 HOH HOH 34 B HOH 35 3 HOH HOH 35 B HOH 36 3 HOH HOH 36 B HOH 37 3 HOH HOH 37 B HOH 39 3 HOH HOH 39 B HOH 41 3 HOH HOH 41 B HOH 42 3 HOH HOH 42 B HOH 44 3 HOH HOH 44 B HOH 46 3 HOH HOH 46 B HOH 47 3 HOH HOH 47 B HOH 48 3 HOH HOH 48 B HOH 49 3 HOH HOH 49 B HOH 50 3 HOH HOH 50 B HOH 56 3 HOH HOH 56 B HOH 58 3 HOH HOH 58 B HOH 66 3 HOH HOH 66 B HOH 69 3 HOH HOH 69 B HOH 70 3 HOH HOH 70 B HOH 72 3 HOH HOH 72 B HOH 73 3 HOH HOH 73 B HOH 74 3 HOH HOH 74 B HOH 75 3 HOH HOH 75 B HOH 77 3 HOH HOH 77 B HOH 79 3 HOH HOH 79 B HOH 105 3 HOH HOH 105 B HOH 109 3 HOH HOH 109 B HOH 110 3 HOH HOH 110 B HOH 111 3 HOH HOH 111 B HOH 115 3 HOH HOH 115 B HOH 116 3 HOH HOH 116 B HOH 119 3 HOH HOH 119 B HOH 121 3 HOH HOH 121 B HOH 127 3 HOH HOH 127 B HOH 128 3 HOH HOH 128 B HOH 129 3 HOH HOH 129 B HOH 130 3 HOH HOH 130 B HOH 131 3 HOH HOH 131 B HOH 132 3 HOH HOH 132 B HOH 136 3 HOH HOH 136 B HOH 137 3 HOH HOH 137 B HOH 143 3 HOH HOH 143 B HOH 144 3 HOH HOH 144 B HOH 145 3 HOH HOH 145 B HOH 148 3 HOH HOH 148 B HOH 151 3 HOH HOH 151 B HOH 161 3 HOH HOH 161 B HOH 163 3 HOH HOH 163 B HOH 164 3 HOH HOH 164 B HOH 167 3 HOH HOH 167 B HOH 169 3 HOH HOH 169 B HOH 170 3 HOH HOH 170 B HOH 172 3 HOH HOH 172 B HOH 175 3 HOH HOH 175 B HOH 176 3 HOH HOH 176 B HOH 178 3 HOH HOH 178 B HOH 181 3 HOH HOH 181 B HOH 183 3 HOH HOH 183 B HOH 186 3 HOH HOH 186 B HOH 187 3 HOH HOH 187 B HOH 188 3 HOH HOH 188 B HOH 189 3 HOH HOH 189 B HOH 190 3 HOH HOH 190 B HOH 191 3 HOH HOH 191 B HOH 192 3 HOH HOH 192 B HOH 193 3 HOH HOH 193 B HOH 195 3 HOH HOH 195 B HOH 197 3 HOH HOH 197 B HOH 199 3 HOH HOH 199 B HOH 200 3 HOH HOH 200 B HOH 201 3 HOH HOH 201 B HOH 202 3 HOH HOH 202 B HOH 204 3 HOH HOH 204 B HOH 205 3 HOH HOH 205 B HOH 207 3 HOH HOH 207 B HOH 209 3 HOH HOH 209 B HOH 210 3 HOH HOH 210 B HOH 211 3 HOH HOH 211 B HOH 212 3 HOH HOH 212 B HOH 213 3 HOH HOH 213 B HOH 217 3 HOH HOH 217 B HOH 228 3 HOH HOH 228 B HOH 230 3 HOH HOH 230 B HOH 234 3 HOH HOH 234 B HOH 237 3 HOH HOH 237 B HOH 238 3 HOH HOH 238 B HOH 240 3 HOH HOH 240 B HOH 241 3 HOH HOH 241 B HOH 242 3 HOH HOH 242 B HOH 244 3 HOH HOH 244 B HOH 245 3 HOH HOH 245 B HOH 250 3 HOH HOH 250 B HOH 251 3 HOH HOH 251 B HOH 252 3 HOH HOH 252 B HOH 253 3 HOH HOH 253 B HOH 254 3 HOH HOH 254 B HOH 255 3 HOH HOH 255 B HOH 257 3 HOH HOH 257 B HOH 261 3 HOH HOH 261 B HOH 263 3 HOH HOH 263 B HOH 264 3 HOH HOH 264 B HOH 270 3 HOH HOH 270 B HOH 274 3 HOH HOH 274 B HOH 278 3 HOH HOH 278 B HOH 279 3 HOH HOH 279 B HOH 281 3 HOH HOH 281 B HOH 282 3 HOH HOH 282 B HOH 283 3 HOH HOH 283 B HOH 284 3 HOH HOH 284 B HOH 285 3 HOH HOH 285 B HOH 286 3 HOH HOH 286 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A TAF 7 n 7 TAF 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B TAF 19 n 7 TAF 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric A HOH 26 H O HOH 1_555 A MG 25 C MG MG 1_555 A HOH 28 H O HOH 1_555 90.4 A HOH 26 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 27 I O HOH 1_555 175.4 A HOH 28 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 27 I O HOH 1_555 86.9 A HOH 26 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 29 I O HOH 1_555 89.1 A HOH 28 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 29 I O HOH 1_555 174.3 B HOH 27 I O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 29 I O HOH 1_555 94.0 A HOH 26 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 30 I O HOH 1_555 94.8 A HOH 28 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 30 I O HOH 1_555 87.0 B HOH 27 I O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 30 I O HOH 1_555 88.8 B HOH 29 I O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 30 I O HOH 1_555 87.4 A HOH 26 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 31 I O HOH 1_555 90.4 A HOH 28 H O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 31 I O HOH 1_555 95.1 B HOH 27 I O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 31 I O HOH 1_555 86.1 B HOH 29 I O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 31 I O HOH 1_555 90.7 B HOH 30 I O HOH 1_555 A MG 25 C MG MG 1_555 B HOH 31 I O HOH 1_555 174.4 A HOH 40 H O HOH 1_555 B MG 38 F MG MG 1_555 A HOH 43 H O HOH 1_555 97.2 A HOH 40 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 39 I O HOH 1_555 93.2 A HOH 43 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 39 I O HOH 1_555 87.8 A HOH 40 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 41 I O HOH 1_555 94.2 A HOH 43 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 41 I O HOH 1_555 93.3 B HOH 39 I O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 41 I O HOH 1_555 172.3 A HOH 40 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 42 I O HOH 1_555 177.6 A HOH 43 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 42 I O HOH 1_555 82.8 B HOH 39 I O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 42 I O HOH 1_555 89.2 B HOH 41 I O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 42 I O HOH 1_555 83.4 A HOH 40 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 44 I O HOH 1_555 88.2 A HOH 43 H O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 44 I O HOH 1_555 172.0 B HOH 39 I O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 44 I O HOH 1_555 85.9 B HOH 41 I O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 44 I O HOH 1_555 92.2 B HOH 42 I O HOH 1_555 B MG 38 F MG MG 1_555 B HOH 44 I O HOH 1_555 92.1 A HOH 52 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 53 H O HOH 1_555 167.2 A HOH 52 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 54 H O HOH 1_555 91.2 A HOH 53 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 54 H O HOH 1_555 85.2 A HOH 52 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 55 H O HOH 1_555 83.4 A HOH 53 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 55 H O HOH 1_555 84.2 A HOH 54 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 55 H O HOH 1_555 88.2 A HOH 52 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 122 H O HOH 1_555 97.1 A HOH 53 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 122 H O HOH 1_555 88.6 A HOH 54 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 122 H O HOH 1_555 167.6 A HOH 55 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 122 H O HOH 1_555 101.9 A HOH 52 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 179 H O HOH 1_555 95.2 A HOH 53 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 179 H O HOH 1_555 96.2 A HOH 54 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 179 H O HOH 1_555 79.7 A HOH 55 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 179 H O HOH 1_555 167.8 A HOH 122 H O HOH 1_555 A MG 51 D MG MG 1_555 A HOH 179 H O HOH 1_555 90.3 B DA 17 B OP1 DA 5 1_555 B MG 45 G MG MG 1_555 B HOH 46 I O HOH 1_555 167.8 B DA 17 B OP1 DA 5 1_555 B MG 45 G MG MG 1_555 B HOH 47 I O HOH 1_555 85.8 B HOH 46 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 47 I O HOH 1_555 94.0 B DA 17 B OP1 DA 5 1_555 B MG 45 G MG MG 1_555 B HOH 48 I O HOH 1_555 79.6 B HOH 46 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 48 I O HOH 1_555 88.2 B HOH 47 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 48 I O HOH 1_555 89.8 B DA 17 B OP1 DA 5 1_555 B MG 45 G MG MG 1_555 B HOH 49 I O HOH 1_555 88.9 B HOH 46 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 49 I O HOH 1_555 103.1 B HOH 47 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 49 I O HOH 1_555 82.0 B HOH 48 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 49 I O HOH 1_555 166.4 B DA 17 B OP1 DA 5 1_555 B MG 45 G MG MG 1_555 B HOH 50 I O HOH 1_555 81.0 B HOH 46 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 50 I O HOH 1_555 99.3 B HOH 47 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 50 I O HOH 1_555 166.7 B HOH 48 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 50 I O HOH 1_555 89.9 B HOH 49 I O HOH 1_555 B MG 45 G MG MG 1_555 B HOH 50 I O HOH 1_555 95.5 B TAF 19 B OP1 TAF 7 3_645 B MG 32 E MG MG 1_555 B HOH 33 I O HOH 1_555 92.7 B TAF 19 B OP1 TAF 7 3_645 B MG 32 E MG MG 1_555 B HOH 34 I O HOH 1_555 176.8 B HOH 33 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 34 I O HOH 1_555 86.7 B TAF 19 B OP1 TAF 7 3_645 B MG 32 E MG MG 1_555 B HOH 35 I O HOH 1_555 95.0 B HOH 33 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 35 I O HOH 1_555 90.1 B HOH 34 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 35 I O HOH 1_555 88.1 B TAF 19 B OP1 TAF 7 3_645 B MG 32 E MG MG 1_555 B HOH 36 I O HOH 1_555 86.2 B HOH 33 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 36 I O HOH 1_555 178.8 B HOH 34 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 36 I O HOH 1_555 94.5 B HOH 35 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 36 I O HOH 1_555 89.8 B TAF 19 B OP1 TAF 7 3_645 B MG 32 E MG MG 1_555 B HOH 37 I O HOH 1_555 92.0 B HOH 33 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 37 I O HOH 1_555 89.2 B HOH 34 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 37 I O HOH 1_555 84.9 B HOH 35 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 37 I O HOH 1_555 173.0 B HOH 36 I O HOH 1_555 B MG 32 E MG MG 1_555 B HOH 37 I O HOH 1_555 91.0 A TAF 7 A TAF 7 DT B TAF 19 B TAF 7 DT 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 1.80 0.30 108.30 110.10 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -4.35 0.70 108.00 103.65 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -4.61 0.70 108.00 103.39 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 -5.46 0.70 108.00 102.54 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 -7.84 0.70 108.00 100.16 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 -5.30 0.70 108.00 102.70 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 2.81 0.30 108.30 111.11 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 -5.27 0.70 108.00 102.73 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 -5.55 0.80 109.40 103.85 B B B O5' C5' C4' DC DC DC 21 21 21 N 1 -6.61 0.70 108.00 101.39 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 -5.32 0.80 102.40 97.08 B B B C3' C2' C1' DG DG DG 22 22 22 N 0.1620000 0.1620000 1.1 20.0 26721 26721 99.6 1 0.0 0.0 1.1 20.0 231 724 7 486 0 0.010 0.02 1.1 30.0 436D 26878 26878 0.0 0.0 0.0660000 1 5.2 99.5 0.1540000 1.1 1.2 99.7 phasing AMoRE refinement SHELXL-97 data reduction DENZO data scaling SCALEPACK THE DICKERSON-DREW B-DNA DODECAMER REVISITED-AT ATOMIC RESOLUTION 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N covale 1.605 both A DA 6 A O3' DA 6 1_555 A TAF 7 A P TAF 7 1_555 covale 1.606 one A TAF 7 A O3' TAF 7 1_555 A DT 8 A P DT 8 1_555 covale 1.592 both B DA 18 B O3' DA 6 1_555 B TAF 19 B P TAF 7 1_555 covale 1.604 one B TAF 19 B O3' TAF 7 1_555 B DT 20 B P DT 8 1_555 metalc 2.062 A MG 25 C MG MG 1_555 A HOH 26 H O HOH 1_555 metalc 2.086 A MG 25 C MG MG 1_555 A HOH 28 H O HOH 1_555 metalc 2.073 A MG 25 C MG MG 1_555 B HOH 27 I O HOH 1_555 metalc 2.098 A MG 25 C MG MG 1_555 B HOH 29 I O HOH 1_555 metalc 2.050 A MG 25 C MG MG 1_555 B HOH 30 I O HOH 1_555 metalc 2.077 A MG 25 C MG MG 1_555 B HOH 31 I O HOH 1_555 metalc 2.078 A HOH 40 H O HOH 1_555 B MG 38 F MG MG 1_555 metalc 2.077 A HOH 43 H O HOH 1_555 B MG 38 F MG MG 1_555 metalc 2.366 A MG 51 D MG MG 1_555 A HOH 52 H O HOH 1_555 metalc 2.691 A MG 51 D MG MG 1_555 A HOH 53 H O HOH 1_555 metalc 2.107 A MG 51 D MG MG 1_555 A HOH 54 H O HOH 1_555 metalc 2.241 A MG 51 D MG MG 1_555 A HOH 55 H O HOH 1_555 metalc 1.937 A MG 51 D MG MG 1_555 A HOH 122 H O HOH 1_555 metalc 2.089 A MG 51 D MG MG 1_555 A HOH 179 H O HOH 1_555 metalc 2.159 B DA 17 B OP1 DA 5 1_555 B MG 45 G MG MG 1_555 metalc 2.072 B TAF 19 B OP1 TAF 7 3_645 B MG 32 E MG MG 1_555 metalc 2.008 B MG 32 E MG MG 1_555 B HOH 33 I O HOH 1_555 metalc 2.129 B MG 32 E MG MG 1_555 B HOH 34 I O HOH 1_555 metalc 2.030 B MG 32 E MG MG 1_555 B HOH 35 I O HOH 1_555 metalc 2.098 B MG 32 E MG MG 1_555 B HOH 36 I O HOH 1_555 metalc 2.008 B MG 32 E MG MG 1_555 B HOH 37 I O HOH 1_555 metalc 2.142 B MG 38 F MG MG 1_555 B HOH 39 I O HOH 1_555 metalc 2.043 B MG 38 F MG MG 1_555 B HOH 41 I O HOH 1_555 metalc 2.192 B MG 38 F MG MG 1_555 B HOH 42 I O HOH 1_555 metalc 1.940 B MG 38 F MG MG 1_555 B HOH 44 I O HOH 1_555 metalc 2.126 B MG 45 G MG MG 1_555 B HOH 46 I O HOH 1_555 metalc 2.237 B MG 45 G MG MG 1_555 B HOH 47 I O HOH 1_555 metalc 2.190 B MG 45 G MG MG 1_555 B HOH 48 I O HOH 1_555 metalc 2.043 B MG 45 G MG MG 1_555 B HOH 49 I O HOH 1_555 metalc 2.136 B MG 45 G MG MG 1_555 B HOH 50 I O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B TAF 19 B N3 TAF 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B TAF 19 B O4 TAF 7 1_555 hydrog WATSON-CRICK A TAF 7 A N3 TAF 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A TAF 7 A O4 TAF 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA DODECAMER, HIGH RESOLUTION, DNA 436D PDB 1 436D 1 12 436D 1 12 436D A 1 1 12 13 24 436D 13 24 436D B 1 1 12 BINDING SITE FOR RESIDUE MG A 25 A MG 25 Software 6 BINDING SITE FOR RESIDUE MG B 32 B MG 32 Software 6 BINDING SITE FOR RESIDUE MG B 38 B MG 38 Software 6 BINDING SITE FOR RESIDUE MG B 45 B MG 45 Software 6 BINDING SITE FOR RESIDUE MG A 51 A MG 51 Software 6 A HOH 26 H HOH 6 1_555 A HOH 28 H HOH 6 1_555 B HOH 27 I HOH 6 1_555 B HOH 29 I HOH 6 1_555 B HOH 30 I HOH 6 1_555 B HOH 31 I HOH 6 1_555 B TAF 19 B TAF 7 6 3_645 B HOH 33 I HOH 6 1_555 B HOH 34 I HOH 6 1_555 B HOH 35 I HOH 6 1_555 B HOH 36 I HOH 6 1_555 B HOH 37 I HOH 6 1_555 A HOH 40 H HOH 6 1_555 A HOH 43 H HOH 6 1_555 B HOH 39 I HOH 6 1_555 B HOH 41 I HOH 6 1_555 B HOH 42 I HOH 6 1_555 B HOH 44 I HOH 6 1_555 B DA 17 B DA 5 6 1_555 B HOH 46 I HOH 6 1_555 B HOH 47 I HOH 6 1_555 B HOH 48 I HOH 6 1_555 B HOH 49 I HOH 6 1_555 B HOH 50 I HOH 6 1_555 A HOH 52 H HOH 6 1_555 A HOH 53 H HOH 6 1_555 A HOH 54 H HOH 6 1_555 A HOH 55 H HOH 6 1_555 A HOH 122 H HOH 6 1_555 A HOH 179 H HOH 6 1_555 19 orthorhombic P 21 21 21