0.007396
0.004270
0.000000
0.000000
0.008541
0.000000
0.000000
0.000000
0.023866
0.00000
0.00000
0.00000
Robin, C.
Beaurepaire, L.
Bressanelli, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
135.200
135.200
41.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Plos Pathog.
1553-7366
9
3560
10.1371/JOURNAL.PPAT.1003560
23966860
A Compact Viral Processing Proteinase/Ubiquitin Hydrolase from the Otu Family.
2013
DK
Acta Crystallogr.,Sect.F
1744-3091
68
486
10.1107/S1744309112008445
22505427
In Praise of Impurity: 30S Ribosomal S15 Protein-Assisted Crystallization of Turnip Yellow Mosaic Virus Proteinase.
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-12-16
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.8856
1.0
PROXIMA 1
SOLEIL
0.8856
SYNCHROTRON
SOLEIL BEAMLINE PROXIMA 1
17778.873
RNA REPLICASE POLYPROTEIN
2.7.7.48
POLYPROTEIN PROCESSING PROTEINASE DOMAIN, RESIDUES 728-879
1
man
polymer
10159.621
30S RIBOSOMAL PROTEIN S15
RESIDUES 2-89
1
nat
polymer
18.015
water
194
nat
water
no
no
MHHHHHHGSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHL
WESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS
MHHHHHHGSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHL
WESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS
A
polypeptide(L)
no
no
SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQL
IERLGLRR
SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQL
IERLGLRR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
12154
TURNIP YELLOW MOSAIC VIRUS
469008
ESCHERICHIA COLI
BL21(DE3)
PGEX MODIFIED
PLASMID
sample
469008
ESCHERICHIA COLI
BL21(DE3)
1
3.99
69
NONE
7.5
0.1M HEPES PH 7.5 2.5 M AMMONIUM FORMATE
repository
Initial release
Database references
1
0
2012-11-14
1
1
2013-11-13
PDBE
Y
PDBE
2011-10-28
REL
HOH
water
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2104
3
HOH
HOH
2104
A
HOH
2105
3
HOH
HOH
2105
A
HOH
2106
3
HOH
HOH
2106
A
HOH
2107
3
HOH
HOH
2107
A
HOH
2108
3
HOH
HOH
2108
A
HOH
2109
3
HOH
HOH
2109
A
HOH
2110
3
HOH
HOH
2110
A
HOH
2111
3
HOH
HOH
2111
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2113
3
HOH
HOH
2113
A
HOH
2114
3
HOH
HOH
2114
A
HOH
2115
3
HOH
HOH
2115
A
HOH
2116
3
HOH
HOH
2116
A
HOH
2117
3
HOH
HOH
2117
A
HOH
2118
3
HOH
HOH
2118
A
HOH
2119
3
HOH
HOH
2119
A
HOH
2120
3
HOH
HOH
2120
A
HOH
2121
3
HOH
HOH
2121
A
HOH
2122
3
HOH
HOH
2122
A
HOH
2123
3
HOH
HOH
2123
A
HOH
2124
3
HOH
HOH
2124
A
HOH
2125
3
HOH
HOH
2125
A
HOH
2126
3
HOH
HOH
2126
A
HOH
2127
3
HOH
HOH
2127
A
HOH
2128
3
HOH
HOH
2128
A
HOH
2129
3
HOH
HOH
2129
A
HOH
2130
3
HOH
HOH
2130
A
HOH
2131
3
HOH
HOH
2131
A
HOH
2132
3
HOH
HOH
2132
A
HOH
2133
3
HOH
HOH
2133
A
HOH
2134
3
HOH
HOH
2134
A
HOH
2135
3
HOH
HOH
2135
A
HOH
2136
3
HOH
HOH
2136
A
HOH
2137
3
HOH
HOH
2137
A
HOH
2138
3
HOH
HOH
2138
A
HOH
2139
3
HOH
HOH
2139
A
HOH
2140
3
HOH
HOH
2140
A
HOH
2141
3
HOH
HOH
2141
A
HOH
2142
3
HOH
HOH
2142
A
HOH
2143
3
HOH
HOH
2143
A
HOH
2144
3
HOH
HOH
2144
A
HOH
2145
3
HOH
HOH
2145
A
HOH
2146
3
HOH
HOH
2146
A
HOH
2147
3
HOH
HOH
2147
A
HOH
2148
3
HOH
HOH
2148
A
HOH
2149
3
HOH
HOH
2149
A
HOH
2150
3
HOH
HOH
2150
A
HOH
2151
3
HOH
HOH
2151
A
HOH
2152
3
HOH
HOH
2152
A
HOH
2153
3
HOH
HOH
2153
A
HOH
2154
3
HOH
HOH
2154
A
HOH
2155
3
HOH
HOH
2155
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
n
1
720
A
n
2
721
A
n
3
722
A
n
4
723
A
n
5
724
A
n
6
725
A
n
7
726
A
n
8
727
A
n
9
728
A
n
10
729
A
n
11
730
A
n
12
731
A
LEU
732
n
13
LEU
732
A
PRO
733
n
14
PRO
733
A
ALA
734
n
15
ALA
734
A
PRO
735
n
16
PRO
735
A
LEU
736
n
17
LEU
736
A
THR
737
n
18
THR
737
A
ASN
738
n
19
ASN
738
A
ASP
739
n
20
ASP
739
A
PRO
740
n
21
PRO
740
A
THR
741
n
22
THR
741
A
ALA
742
n
23
ALA
742
A
ILE
743
n
24
ILE
743
A
GLY
744
n
25
GLY
744
A
PRO
745
n
26
PRO
745
A
VAL
746
n
27
VAL
746
A
LEU
747
n
28
LEU
747
A
PRO
748
n
29
PRO
748
A
PHE
749
n
30
PHE
749
A
GLU
750
n
31
GLU
750
A
GLU
751
n
32
GLU
751
A
LEU
752
n
33
LEU
752
A
HIS
753
n
34
HIS
753
A
PRO
754
n
35
PRO
754
A
ARG
755
n
36
ARG
755
A
ARG
756
n
37
ARG
756
A
TYR
757
n
38
TYR
757
A
PRO
758
n
39
PRO
758
A
GLU
759
n
40
GLU
759
A
ASN
760
n
41
ASN
760
A
THR
761
n
42
THR
761
A
ALA
762
n
43
ALA
762
A
THR
763
n
44
THR
763
A
PHE
764
n
45
PHE
764
A
LEU
765
n
46
LEU
765
A
THR
766
n
47
THR
766
A
ARG
767
n
48
ARG
767
A
LEU
768
n
49
LEU
768
A
ARG
769
n
50
ARG
769
A
SER
770
n
51
SER
770
A
LEU
771
n
52
LEU
771
A
PRO
772
n
53
PRO
772
A
SER
773
n
54
SER
773
A
ASN
774
n
55
ASN
774
A
HIS
775
n
56
HIS
775
A
LEU
776
n
57
LEU
776
A
PRO
777
n
58
PRO
777
A
GLN
778
n
59
GLN
778
A
PRO
779
n
60
PRO
779
A
THR
780
n
61
THR
780
A
LEU
781
n
62
LEU
781
A
ASN
782
n
63
ASN
782
A
CYS
783
n
64
CYS
783
A
LEU
784
n
65
LEU
784
A
LEU
785
n
66
LEU
785
A
SER
786
n
67
SER
786
A
ALA
787
n
68
ALA
787
A
VAL
788
n
69
VAL
788
A
SER
789
n
70
SER
789
A
ASP
790
n
71
ASP
790
A
GLN
791
n
72
GLN
791
A
THR
792
n
73
THR
792
A
LYS
793
n
74
LYS
793
A
VAL
794
n
75
VAL
794
A
SER
795
n
76
SER
795
A
GLU
796
n
77
GLU
796
A
GLU
797
n
78
GLU
797
A
HIS
798
n
79
HIS
798
A
LEU
799
n
80
LEU
799
A
TRP
800
n
81
TRP
800
A
GLU
801
n
82
GLU
801
A
SER
802
n
83
SER
802
A
LEU
803
n
84
LEU
803
A
GLN
804
n
85
GLN
804
A
THR
805
n
86
THR
805
A
ILE
806
n
87
ILE
806
A
LEU
807
n
88
LEU
807
A
PRO
808
n
89
PRO
808
A
ASP
809
n
90
ASP
809
A
SER
810
n
91
SER
810
A
GLN
811
n
92
GLN
811
A
LEU
812
n
93
LEU
812
A
SER
813
n
94
SER
813
A
ASN
814
n
95
ASN
814
A
GLU
815
n
96
GLU
815
A
GLU
816
n
97
GLU
816
A
THR
817
n
98
THR
817
A
ASN
818
n
99
ASN
818
A
THR
819
n
100
THR
819
A
LEU
820
n
101
LEU
820
A
GLY
821
n
102
GLY
821
A
LEU
822
n
103
LEU
822
A
SER
823
n
104
SER
823
A
THR
824
n
105
THR
824
A
GLU
825
n
106
GLU
825
A
HIS
826
n
107
HIS
826
A
LEU
827
n
108
LEU
827
A
THR
828
n
109
THR
828
A
ALA
829
n
110
ALA
829
A
LEU
830
n
111
LEU
830
A
ALA
831
n
112
ALA
831
A
HIS
832
n
113
HIS
832
A
LEU
833
n
114
LEU
833
A
TYR
834
n
115
TYR
834
A
ASN
835
n
116
ASN
835
A
PHE
836
n
117
PHE
836
A
GLN
837
n
118
GLN
837
A
ALA
838
n
119
ALA
838
A
THR
839
n
120
THR
839
A
VAL
840
n
121
VAL
840
A
TYR
841
n
122
TYR
841
A
SER
842
n
123
SER
842
A
ASP
843
n
124
ASP
843
A
ARG
844
n
125
ARG
844
A
GLY
845
n
126
GLY
845
A
PRO
846
n
127
PRO
846
A
ILE
847
n
128
ILE
847
A
LEU
848
n
129
LEU
848
A
PHE
849
n
130
PHE
849
A
GLY
850
n
131
GLY
850
A
PRO
851
n
132
PRO
851
A
SER
852
n
133
SER
852
A
ASP
853
n
134
ASP
853
A
THR
854
n
135
THR
854
A
ILE
855
n
136
ILE
855
A
LYS
856
n
137
LYS
856
A
ARG
857
n
138
ARG
857
A
ILE
858
n
139
ILE
858
A
ASP
859
n
140
ASP
859
A
ILE
860
n
141
ILE
860
A
THR
861
n
142
THR
861
A
HIS
862
n
143
HIS
862
A
THR
863
n
144
THR
863
A
THR
864
n
145
THR
864
A
GLY
865
n
146
GLY
865
A
PRO
866
n
147
PRO
866
A
PRO
867
n
148
PRO
867
A
SER
868
n
149
SER
868
A
HIS
869
n
150
HIS
869
A
PHE
870
n
151
PHE
870
A
SER
871
n
152
SER
871
A
PRO
872
n
153
PRO
872
A
GLY
873
n
154
GLY
873
A
LYS
874
n
155
LYS
874
A
ARG
875
n
156
ARG
875
A
LEU
876
n
157
LEU
876
A
LEU
877
n
158
LEU
877
A
GLY
878
n
159
GLY
878
A
SER
879
n
160
SER
879
A
SER
1
n
1
SER
1
B
LEU
2
n
2
LEU
2
B
SER
3
n
3
SER
3
B
THR
4
n
4
THR
4
B
GLU
5
n
5
GLU
5
B
ALA
6
n
6
ALA
6
B
THR
7
n
7
THR
7
B
ALA
8
n
8
ALA
8
B
LYS
9
n
9
LYS
9
B
ILE
10
n
10
ILE
10
B
VAL
11
n
11
VAL
11
B
SER
12
n
12
SER
12
B
GLU
13
n
13
GLU
13
B
PHE
14
n
14
PHE
14
B
GLY
15
n
15
GLY
15
B
ARG
16
n
16
ARG
16
B
ASP
17
n
17
ASP
17
B
ALA
18
n
18
ALA
18
B
ASN
19
n
19
ASN
19
B
ASP
20
n
20
ASP
20
B
THR
21
n
21
THR
21
B
GLY
22
n
22
GLY
22
B
SER
23
n
23
SER
23
B
THR
24
n
24
THR
24
B
GLU
25
n
25
GLU
25
B
VAL
26
n
26
VAL
26
B
GLN
27
n
27
GLN
27
B
VAL
28
n
28
VAL
28
B
ALA
29
n
29
ALA
29
B
LEU
30
n
30
LEU
30
B
LEU
31
n
31
LEU
31
B
THR
32
n
32
THR
32
B
ALA
33
n
33
ALA
33
B
GLN
34
n
34
GLN
34
B
ILE
35
n
35
ILE
35
B
ASN
36
n
36
ASN
36
B
HIS
37
n
37
HIS
37
B
LEU
38
n
38
LEU
38
B
GLN
39
n
39
GLN
39
B
GLY
40
n
40
GLY
40
B
HIS
41
n
41
HIS
41
B
PHE
42
n
42
PHE
42
B
n
43
43
B
n
44
44
B
n
45
45
B
n
46
46
B
n
47
47
B
n
48
48
B
n
49
49
B
n
50
50
B
SER
51
n
51
SER
51
B
ARG
52
n
52
ARG
52
B
ARG
53
n
53
ARG
53
B
GLY
54
n
54
GLY
54
B
LEU
55
n
55
LEU
55
B
LEU
56
n
56
LEU
56
B
ARG
57
n
57
ARG
57
B
MET
58
n
58
MET
58
B
VAL
59
n
59
VAL
59
B
SER
60
n
60
SER
60
B
GLN
61
n
61
GLN
61
B
ARG
62
n
62
ARG
62
B
ARG
63
n
63
ARG
63
B
LYS
64
n
64
LYS
64
B
LEU
65
n
65
LEU
65
B
LEU
66
n
66
LEU
66
B
ASP
67
n
67
ASP
67
B
TYR
68
n
68
TYR
68
B
LEU
69
n
69
LEU
69
B
LYS
70
n
70
LYS
70
B
ARG
71
n
71
ARG
71
B
LYS
72
n
72
LYS
72
B
ASP
73
n
73
ASP
73
B
VAL
74
n
74
VAL
74
B
ALA
75
n
75
ALA
75
B
ARG
76
n
76
ARG
76
B
TYR
77
n
77
TYR
77
B
THR
78
n
78
THR
78
B
GLN
79
n
79
GLN
79
B
LEU
80
n
80
LEU
80
B
ILE
81
n
81
ILE
81
B
GLU
82
n
82
GLU
82
B
ARG
83
n
83
ARG
83
B
LEU
84
n
84
LEU
84
B
GLY
85
n
85
GLY
85
B
LEU
86
n
86
LEU
86
B
ARG
87
n
87
ARG
87
B
ARG
88
n
88
ARG
88
B
2.0407
-1.5638
-0.0492
2.2385
0.3822
1.0976
-0.0326
-0.0052
0.1392
-0.0147
0.0294
-0.0995
-0.0228
0.0983
0.0061
0.0802
0.0277
-0.0056
0.1363
0.0073
0.1055
refined
11.1820
67.3192
21.2342
X-RAY DIFFRACTION
2.1414
-1.1174
-0.2884
1.6361
0.2217
1.5551
0.1426
0.3283
-0.3821
-0.2467
-0.1535
0.2303
0.1386
-0.0361
0.0024
0.2001
0.1137
-0.0359
0.2949
-0.0657
0.1638
refined
24.8903
43.2589
11.7642
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A
X-RAY DIFFRACTION
2
CHAIN B
author_and_software_defined_assembly
PISA
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
747
A
N
LEU
28
A
O
THR
766
A
O
THR
47
A
N
PHE
849
A
N
PHE
130
A
O
ALA
838
A
O
ALA
119
A
N
GLN
837
A
N
GLN
118
A
O
LYS
856
A
O
LYS
137
A
N
THR
863
A
N
THR
144
A
O
HIS
869
A
O
HIS
150
1
B
HOH
2026
D
HOH
1
B
HOH
2037
D
HOH
1
A
MET
720
A
MET
1
1
Y
1
A
HIS
721
A
HIS
2
1
Y
1
A
HIS
722
A
HIS
3
1
Y
1
A
HIS
723
A
HIS
4
1
Y
1
A
HIS
724
A
HIS
5
1
Y
1
A
HIS
725
A
HIS
6
1
Y
1
A
HIS
726
A
HIS
7
1
Y
1
A
GLY
727
A
GLY
8
1
Y
1
A
SER
728
A
SER
9
1
Y
1
A
SER
729
A
SER
10
1
Y
1
A
GLN
730
A
GLN
11
1
Y
1
A
LEU
731
A
LEU
12
1
Y
1
B
ALA
43
B
ALA
43
1
Y
1
B
GLU
44
B
GLU
44
1
Y
1
B
HIS
45
B
HIS
45
1
Y
1
B
LYS
46
B
LYS
46
1
Y
1
B
LYS
47
B
LYS
47
1
Y
1
B
ASP
48
B
ASP
48
1
Y
1
B
HIS
49
B
HIS
49
1
Y
1
B
HIS
50
B
HIS
50
1
Y
1
B
ASP
73
-160.70
94.42
1
B
ARG
87
-95.50
35.31
1
B
ARG
87
-95.50
30.78
33.2
2.7292
0.0000
0.0000
2.7292
0.0000
-1.6959
0.2011
0.1678
0.1704
2.000
39.029
2275
29610
7.7
99.04
0.56
1
2.00
MIRAS
18.23
0.73
1.00
NONE
ML
FLAT BULK SOLVENT MODEL
58.886
0.367
2.000
39.029
194
1991
0
0
1797
0.007
1879
1.050
2558
13.509
722
0.069
297
0.004
335
0.2769
0.2224
2.0715
220
2719
99.00
0.2402
0.2001
2.1544
223
2691
99.00
0.2469
0.1890
2.2525
220
2720
99.00
0.1979
0.1685
2.3712
241
2720
99.00
0.2222
0.1636
2.5197
222
2710
99.00
0.2076
0.1676
2.7142
228
2747
100.00
0.2060
0.1754
2.9873
234
2748
99.00
0.2122
0.1704
3.4194
223
2732
99.00
0.1770
0.1480
4.3072
228
2746
98.00
0.1773
0.1609
39.0363
236
2802
98.00
27.24
2.00
39.50
4A5U
29613
-3.0
0.06
1
14.80
3.72
99.0
0.06
2.00
2.05
2.20
1
3.74
99.5
data reduction
XDS
data scaling
XSCALE
phasing
SHELXCD
phasing
autoSHARP
refinement
PHENIX
RNA REPLICASE POLYPROTEIN (E.C.2.7.7.48), 30S RIBOSOMAL PROTEIN S15
Turnip yellow mosaic virus proteinase and Escherichia coli 30S ribosomal S15
1
N
N
2
N
N
3
N
N
3
N
N
A
PRO
733
A
PRO
14
HELX_P
A
ASN
738
A
ASN
19
1
1
6
A
PHE
749
A
PHE
30
HELX_P
A
HIS
753
A
HIS
34
1
2
5
A
ASN
782
A
ASN
63
HELX_P
A
LYS
793
A
LYS
74
1
3
12
A
SER
795
A
SER
76
HELX_P
A
GLN
804
A
GLN
85
1
4
10
A
PRO
808
A
PRO
89
HELX_P
A
LEU
812
A
LEU
93
5
5
5
A
ASN
814
A
ASN
95
HELX_P
A
GLY
821
A
GLY
102
1
6
8
A
SER
823
A
SER
104
HELX_P
A
ASN
835
A
ASN
116
1
7
13
B
SER
3
B
SER
3
HELX_P
B
GLY
15
B
GLY
15
1
8
13
B
SER
23
B
SER
23
HELX_P
B
PHE
42
B
PHE
42
1
9
20
B
SER
51
B
SER
51
HELX_P
B
ASP
73
B
ASP
73
1
10
23
B
ASP
73
B
ASP
73
HELX_P
B
LEU
84
B
LEU
84
1
11
12
TRANSFERASE/RNA BINDING PROTEIN
TRANSFERASE-RNA BINDING PROTEIN COMPLEX, CYSTEINE PROTEINASE
A
GLY
865
A
GLY
146
1
A
PRO
866
A
PRO
147
8.13
A
PRO
866
A
PRO
147
1
A
PRO
867
A
PRO
148
-2.50
POLR_TYMV
UNP
1
P10358
E8Y371_ECOKO
UNP
2
E8Y371
728
879
4A5U
728
879
P10358
A
1
9
160
2
89
4A5U
1
88
E8Y371
B
2
1
88
1
expression tag
MET
720
4A5U
A
P10358
UNP
1
1
expression tag
HIS
721
4A5U
A
P10358
UNP
2
1
expression tag
HIS
722
4A5U
A
P10358
UNP
3
1
expression tag
HIS
723
4A5U
A
P10358
UNP
4
1
expression tag
HIS
724
4A5U
A
P10358
UNP
5
1
expression tag
HIS
725
4A5U
A
P10358
UNP
6
1
expression tag
HIS
726
4A5U
A
P10358
UNP
7
1
expression tag
GLY
727
4A5U
A
P10358
UNP
8
2
4
anti-parallel
anti-parallel
parallel
anti-parallel
A
ALA
742
A
ALA
23
A
PRO
748
A
PRO
29
A
LEU
765
A
LEU
46
A
ARG
769
A
ARG
50
A
GLY
845
A
GLY
126
A
PHE
849
A
PHE
130
A
PHE
836
A
PHE
117
A
SER
842
A
SER
123
A
LYS
856
A
LYS
137
A
THR
863
A
THR
144
A
HIS
869
A
HIS
150
A
PRO
872
A
PRO
153
152
P 31 2 1