0.014745
0.000000
0.000000
0.000000
0.014241
0.000000
0.000000
0.000000
0.011953
0.00000
0.00000
0.00000
Canning, P.
Vollmar, M.
Cooper, C.D.O.
Mahajan, P.
Daga, N.
Berridge, G.
Burgess-Brown, N.
Muniz, J.R.C.
Krojer, T.
von Delft, F.
Weigelt, J.
Arrowsmith, C.H.
Edwards, A.M.
Bountra, C.
Bullock, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
67.819
70.220
83.660
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C15 H13 F2 N7 O2 S2
425.436
5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE
CDK 1/2 INHIBITOR
non-polymer
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
F
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
N
94
N
F
Y
95
N
C
N
96
N
N
N
97
N
C
N
98
N
S
Y
99
N
N
Y
100
N
N
Y
101
N
C
N
102
N
N
Y
103
N
N
Y
104
N
C
N
105
N
N
Y
106
N
C
Y
107
N
C
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
N
112
N
S
N
113
N
O
N
114
N
O
N
115
N
N
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
S
C
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
O
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
Y
193
N
C
Y
194
N
N
Y
195
N
C
Y
196
N
C
Y
197
N
N
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
S
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
N
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
N
286
N
C
N
287
N
S
N
288
N
C
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
R
C
N
360
N
O
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
N
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
doub
Y
85
N
sing
Y
86
N
sing
N
87
N
sing
Y
88
N
doub
N
89
N
sing
Y
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
Y
99
N
sing
Y
100
N
sing
Y
101
N
doub
N
102
N
sing
Y
103
N
doub
N
104
N
sing
N
105
N
sing
Y
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
doub
Y
111
N
sing
Y
112
N
sing
N
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
Y
192
N
sing
Y
193
N
doub
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
N
197
N
sing
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
US
Cell Rep
2211-1247
22
885
894
10.1016/j.celrep.2017.12.083
29420175
CDKL Family Kinases Have Evolved Distinct Structural Features and Ciliary Function.
2018
10.2210/pdb4aaa/pdb
pdb_00004aaa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-10-21
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
I02
Diamond
0.9795
SYNCHROTRON
DIAMOND BEAMLINE I02
HIS85 CONFORMATION B AND ASP84 CONFORMATION A MAY NOT BE OCCUPIED SIMULTANEOUSLY.
38390.457
CYCLIN-DEPENDENT KINASE-LIKE 2
2.7.11.22
KINASE DOMAIN, RESIDUES 1-308
YES
1
man
polymer
425.436
5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
6
syn
non-polymer
18.015
water
259
nat
water
PROTEIN KINASE P56 KKIAMRE, SERINE/THREONINE-PROTEIN KINASE KKIAMRE
no
no
MGHHHHHHSSGVDLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQ
LRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQS
GVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMC
LGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFAERFS
QELQLKVQKDA
MGHHHHHHSSGVDLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQ
LRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQS
GVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMC
LGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFAERFS
QELQLKVQKDA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
FALL ARMYWORM
sample
9606
HOMO SAPIENS
SF9
7108
SPODOPTERA FRUGIPERDA
BACULOVIRUS
PFB-LIC-BSE
1
2.6
52.7
NONE
0.2M NACL, 0.1M TRIS PH 8.5; 25% PEG 3350.
audit_author
citation
citation_author
database_2
pdbx_database_status
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Structure summary
Database references
Derived calculations
Other
Data collection
Refinement description
1
0
2011-12-21
1
1
2018-01-24
1
2
2022-03-30
1
3
2023-12-20
_audit_author.name
_citation.country
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2011-11-30
REL
REL
DKI
5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE
EDO
1,2-ETHANEDIOL
HOH
water
ENGINEERED RESIDUE IN CHAIN A, THR 159 TO ASP
ENGINEERED RESIDUE IN CHAIN A, TYR 161 TO GLU
5-AMINO-3-((4-(AMINOSULFONYL)PHENYL)AMINO)-N-(2,
6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE
(DKI): CDK12 INHIBITOR III
TWO PHOSPHO-MIMETIC ACTIVATING MUTATIONS INTRODUCED.
3NIZ
PDB ENTRY 3NIZ
PDB
experimental model
DKI
500
2
DKI
DKI
500
A
EDO
501
3
EDO
EDO
501
A
EDO
502
3
EDO
EDO
502
A
EDO
503
3
EDO
EDO
503
A
EDO
504
3
EDO
EDO
504
A
EDO
505
3
EDO
EDO
505
A
EDO
506
3
EDO
EDO
506
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2105
4
HOH
HOH
2105
A
HOH
2106
4
HOH
HOH
2106
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2108
4
HOH
HOH
2108
A
HOH
2109
4
HOH
HOH
2109
A
HOH
2110
4
HOH
HOH
2110
A
HOH
2111
4
HOH
HOH
2111
A
HOH
2112
4
HOH
HOH
2112
A
HOH
2113
4
HOH
HOH
2113
A
HOH
2114
4
HOH
HOH
2114
A
HOH
2115
4
HOH
HOH
2115
A
HOH
2116
4
HOH
HOH
2116
A
HOH
2117
4
HOH
HOH
2117
A
HOH
2118
4
HOH
HOH
2118
A
HOH
2119
4
HOH
HOH
2119
A
HOH
2120
4
HOH
HOH
2120
A
HOH
2121
4
HOH
HOH
2121
A
HOH
2122
4
HOH
HOH
2122
A
HOH
2123
4
HOH
HOH
2123
A
HOH
2124
4
HOH
HOH
2124
A
HOH
2125
4
HOH
HOH
2125
A
HOH
2126
4
HOH
HOH
2126
A
HOH
2127
4
HOH
HOH
2127
A
HOH
2128
4
HOH
HOH
2128
A
HOH
2129
4
HOH
HOH
2129
A
HOH
2130
4
HOH
HOH
2130
A
HOH
2131
4
HOH
HOH
2131
A
HOH
2132
4
HOH
HOH
2132
A
HOH
2133
4
HOH
HOH
2133
A
HOH
2134
4
HOH
HOH
2134
A
HOH
2135
4
HOH
HOH
2135
A
HOH
2136
4
HOH
HOH
2136
A
HOH
2137
4
HOH
HOH
2137
A
HOH
2138
4
HOH
HOH
2138
A
HOH
2139
4
HOH
HOH
2139
A
HOH
2140
4
HOH
HOH
2140
A
HOH
2141
4
HOH
HOH
2141
A
HOH
2142
4
HOH
HOH
2142
A
HOH
2143
4
HOH
HOH
2143
A
HOH
2144
4
HOH
HOH
2144
A
HOH
2145
4
HOH
HOH
2145
A
HOH
2146
4
HOH
HOH
2146
A
HOH
2147
4
HOH
HOH
2147
A
HOH
2148
4
HOH
HOH
2148
A
HOH
2149
4
HOH
HOH
2149
A
HOH
2150
4
HOH
HOH
2150
A
HOH
2151
4
HOH
HOH
2151
A
HOH
2152
4
HOH
HOH
2152
A
HOH
2153
4
HOH
HOH
2153
A
HOH
2154
4
HOH
HOH
2154
A
HOH
2155
4
HOH
HOH
2155
A
HOH
2156
4
HOH
HOH
2156
A
HOH
2157
4
HOH
HOH
2157
A
HOH
2158
4
HOH
HOH
2158
A
HOH
2159
4
HOH
HOH
2159
A
HOH
2160
4
HOH
HOH
2160
A
HOH
2161
4
HOH
HOH
2161
A
HOH
2162
4
HOH
HOH
2162
A
HOH
2163
4
HOH
HOH
2163
A
HOH
2164
4
HOH
HOH
2164
A
HOH
2165
4
HOH
HOH
2165
A
HOH
2166
4
HOH
HOH
2166
A
HOH
2167
4
HOH
HOH
2167
A
HOH
2168
4
HOH
HOH
2168
A
HOH
2169
4
HOH
HOH
2169
A
HOH
2170
4
HOH
HOH
2170
A
HOH
2171
4
HOH
HOH
2171
A
HOH
2172
4
HOH
HOH
2172
A
HOH
2173
4
HOH
HOH
2173
A
HOH
2174
4
HOH
HOH
2174
A
HOH
2175
4
HOH
HOH
2175
A
HOH
2176
4
HOH
HOH
2176
A
HOH
2177
4
HOH
HOH
2177
A
HOH
2178
4
HOH
HOH
2178
A
HOH
2179
4
HOH
HOH
2179
A
HOH
2180
4
HOH
HOH
2180
A
HOH
2181
4
HOH
HOH
2181
A
HOH
2182
4
HOH
HOH
2182
A
HOH
2183
4
HOH
HOH
2183
A
HOH
2184
4
HOH
HOH
2184
A
HOH
2185
4
HOH
HOH
2185
A
HOH
2186
4
HOH
HOH
2186
A
HOH
2187
4
HOH
HOH
2187
A
HOH
2188
4
HOH
HOH
2188
A
HOH
2189
4
HOH
HOH
2189
A
HOH
2190
4
HOH
HOH
2190
A
HOH
2191
4
HOH
HOH
2191
A
HOH
2192
4
HOH
HOH
2192
A
HOH
2193
4
HOH
HOH
2193
A
HOH
2194
4
HOH
HOH
2194
A
HOH
2195
4
HOH
HOH
2195
A
HOH
2196
4
HOH
HOH
2196
A
HOH
2197
4
HOH
HOH
2197
A
HOH
2198
4
HOH
HOH
2198
A
HOH
2199
4
HOH
HOH
2199
A
HOH
2200
4
HOH
HOH
2200
A
HOH
2201
4
HOH
HOH
2201
A
HOH
2202
4
HOH
HOH
2202
A
HOH
2203
4
HOH
HOH
2203
A
HOH
2204
4
HOH
HOH
2204
A
HOH
2205
4
HOH
HOH
2205
A
HOH
2206
4
HOH
HOH
2206
A
HOH
2207
4
HOH
HOH
2207
A
HOH
2208
4
HOH
HOH
2208
A
HOH
2209
4
HOH
HOH
2209
A
HOH
2210
4
HOH
HOH
2210
A
HOH
2211
4
HOH
HOH
2211
A
HOH
2212
4
HOH
HOH
2212
A
HOH
2213
4
HOH
HOH
2213
A
HOH
2214
4
HOH
HOH
2214
A
HOH
2215
4
HOH
HOH
2215
A
HOH
2216
4
HOH
HOH
2216
A
HOH
2217
4
HOH
HOH
2217
A
HOH
2218
4
HOH
HOH
2218
A
HOH
2219
4
HOH
HOH
2219
A
HOH
2220
4
HOH
HOH
2220
A
HOH
2221
4
HOH
HOH
2221
A
HOH
2222
4
HOH
HOH
2222
A
HOH
2223
4
HOH
HOH
2223
A
HOH
2224
4
HOH
HOH
2224
A
HOH
2225
4
HOH
HOH
2225
A
HOH
2226
4
HOH
HOH
2226
A
HOH
2227
4
HOH
HOH
2227
A
HOH
2228
4
HOH
HOH
2228
A
HOH
2229
4
HOH
HOH
2229
A
HOH
2230
4
HOH
HOH
2230
A
HOH
2231
4
HOH
HOH
2231
A
HOH
2232
4
HOH
HOH
2232
A
HOH
2233
4
HOH
HOH
2233
A
HOH
2234
4
HOH
HOH
2234
A
HOH
2235
4
HOH
HOH
2235
A
HOH
2236
4
HOH
HOH
2236
A
HOH
2237
4
HOH
HOH
2237
A
HOH
2238
4
HOH
HOH
2238
A
HOH
2239
4
HOH
HOH
2239
A
HOH
2240
4
HOH
HOH
2240
A
HOH
2241
4
HOH
HOH
2241
A
HOH
2242
4
HOH
HOH
2242
A
HOH
2243
4
HOH
HOH
2243
A
HOH
2244
4
HOH
HOH
2244
A
HOH
2245
4
HOH
HOH
2245
A
HOH
2246
4
HOH
HOH
2246
A
HOH
2247
4
HOH
HOH
2247
A
HOH
2248
4
HOH
HOH
2248
A
HOH
2249
4
HOH
HOH
2249
A
HOH
2250
4
HOH
HOH
2250
A
HOH
2251
4
HOH
HOH
2251
A
HOH
2252
4
HOH
HOH
2252
A
HOH
2253
4
HOH
HOH
2253
A
HOH
2254
4
HOH
HOH
2254
A
HOH
2255
4
HOH
HOH
2255
A
HOH
2256
4
HOH
HOH
2256
A
HOH
2257
4
HOH
HOH
2257
A
HOH
2258
4
HOH
HOH
2258
A
HOH
2259
4
HOH
HOH
2259
A
n
1
-22
A
n
2
-21
A
n
3
-20
A
n
4
-19
A
n
5
-18
A
n
6
-17
A
n
7
-16
A
n
8
-15
A
n
9
-14
A
n
10
-13
A
n
11
-12
A
n
12
-11
A
n
13
-10
A
n
14
-9
A
n
15
-8
A
n
16
-7
A
n
17
-6
A
n
18
-5
A
LEU
-4
n
19
LEU
-4
A
TYR
-3
n
20
TYR
-3
A
PHE
-2
n
21
PHE
-2
A
GLN
-1
n
22
GLN
-1
A
SER
0
n
23
SER
0
A
MET
1
n
24
MET
1
A
GLU
2
n
25
GLU
2
A
LYS
3
n
26
LYS
3
A
TYR
4
n
27
TYR
4
A
GLU
5
n
28
GLU
5
A
ASN
6
n
29
ASN
6
A
LEU
7
n
30
LEU
7
A
GLY
8
n
31
GLY
8
A
LEU
9
n
32
LEU
9
A
VAL
10
n
33
VAL
10
A
GLY
11
n
34
GLY
11
A
GLU
12
n
35
GLU
12
A
GLY
13
n
36
GLY
13
A
SER
14
n
37
SER
14
A
TYR
15
n
38
TYR
15
A
GLY
16
n
39
GLY
16
A
MET
17
n
40
MET
17
A
VAL
18
n
41
VAL
18
A
MET
19
n
42
MET
19
A
LYS
20
n
43
LYS
20
A
CYS
21
n
44
CYS
21
A
ARG
22
n
45
ARG
22
A
ASN
23
n
46
ASN
23
A
LYS
24
n
47
LYS
24
A
ASP
25
n
48
ASP
25
A
THR
26
n
49
THR
26
A
GLY
27
n
50
GLY
27
A
ARG
28
n
51
ARG
28
A
ILE
29
n
52
ILE
29
A
VAL
30
n
53
VAL
30
A
ALA
31
n
54
ALA
31
A
ILE
32
n
55
ILE
32
A
LYS
33
n
56
LYS
33
A
LYS
34
n
57
LYS
34
A
PHE
35
n
58
PHE
35
A
LEU
36
n
59
LEU
36
A
GLU
37
n
60
GLU
37
A
SER
38
n
61
SER
38
A
ASP
39
n
62
ASP
39
A
ASP
40
n
63
ASP
40
A
ASP
41
n
64
ASP
41
A
LYS
42
n
65
LYS
42
A
MET
43
n
66
MET
43
A
VAL
44
n
67
VAL
44
A
LYS
45
n
68
LYS
45
A
LYS
46
n
69
LYS
46
A
ILE
47
n
70
ILE
47
A
ALA
48
n
71
ALA
48
A
MET
49
n
72
MET
49
A
ARG
50
n
73
ARG
50
A
GLU
51
n
74
GLU
51
A
ILE
52
n
75
ILE
52
A
LYS
53
n
76
LYS
53
A
LEU
54
n
77
LEU
54
A
LEU
55
n
78
LEU
55
A
LYS
56
n
79
LYS
56
A
GLN
57
n
80
GLN
57
A
LEU
58
n
81
LEU
58
A
ARG
59
n
82
ARG
59
A
HIS
60
n
83
HIS
60
A
GLU
61
n
84
GLU
61
A
ASN
62
n
85
ASN
62
A
LEU
63
n
86
LEU
63
A
VAL
64
n
87
VAL
64
A
ASN
65
n
88
ASN
65
A
LEU
66
n
89
LEU
66
A
LEU
67
n
90
LEU
67
A
GLU
68
n
91
GLU
68
A
VAL
69
n
92
VAL
69
A
CYS
70
n
93
CYS
70
A
LYS
71
n
94
LYS
71
A
LYS
72
n
95
LYS
72
A
LYS
73
n
96
LYS
73
A
LYS
74
n
97
LYS
74
A
ARG
75
n
98
ARG
75
A
TRP
76
n
99
TRP
76
A
TYR
77
n
100
TYR
77
A
LEU
78
n
101
LEU
78
A
VAL
79
n
102
VAL
79
A
PHE
80
n
103
PHE
80
A
GLU
81
n
104
GLU
81
A
PHE
82
n
105
PHE
82
A
VAL
83
n
106
VAL
83
A
ASP
84
n
107
ASP
84
A
HIS
85
n
108
HIS
85
A
THR
86
n
109
THR
86
A
ILE
87
n
110
ILE
87
A
LEU
88
n
111
LEU
88
A
ASP
89
n
112
ASP
89
A
ASP
90
n
113
ASP
90
A
LEU
91
n
114
LEU
91
A
GLU
92
n
115
GLU
92
A
LEU
93
n
116
LEU
93
A
PHE
94
n
117
PHE
94
A
PRO
95
n
118
PRO
95
A
ASN
96
n
119
ASN
96
A
GLY
97
n
120
GLY
97
A
LEU
98
n
121
LEU
98
A
ASP
99
n
122
ASP
99
A
TYR
100
n
123
TYR
100
A
GLN
101
n
124
GLN
101
A
VAL
102
n
125
VAL
102
A
VAL
103
n
126
VAL
103
A
GLN
104
n
127
GLN
104
A
LYS
105
n
128
LYS
105
A
TYR
106
n
129
TYR
106
A
LEU
107
n
130
LEU
107
A
PHE
108
n
131
PHE
108
A
GLN
109
n
132
GLN
109
A
ILE
110
n
133
ILE
110
A
ILE
111
n
134
ILE
111
A
ASN
112
n
135
ASN
112
A
GLY
113
n
136
GLY
113
A
ILE
114
n
137
ILE
114
A
GLY
115
n
138
GLY
115
A
PHE
116
n
139
PHE
116
A
CYS
117
n
140
CYS
117
A
HIS
118
n
141
HIS
118
A
SER
119
n
142
SER
119
A
HIS
120
n
143
HIS
120
A
ASN
121
n
144
ASN
121
A
ILE
122
n
145
ILE
122
A
ILE
123
n
146
ILE
123
A
HIS
124
n
147
HIS
124
A
ARG
125
n
148
ARG
125
A
ASP
126
n
149
ASP
126
A
ILE
127
n
150
ILE
127
A
LYS
128
n
151
LYS
128
A
PRO
129
n
152
PRO
129
A
GLU
130
n
153
GLU
130
A
ASN
131
n
154
ASN
131
A
ILE
132
n
155
ILE
132
A
LEU
133
n
156
LEU
133
A
VAL
134
n
157
VAL
134
A
SER
135
n
158
SER
135
A
GLN
136
n
159
GLN
136
A
SER
137
n
160
SER
137
A
GLY
138
n
161
GLY
138
A
VAL
139
n
162
VAL
139
A
VAL
140
n
163
VAL
140
A
LYS
141
n
164
LYS
141
A
LEU
142
n
165
LEU
142
A
CYS
143
n
166
CYS
143
A
ASP
144
n
167
ASP
144
A
PHE
145
n
168
PHE
145
A
GLY
146
n
169
GLY
146
A
PHE
147
n
170
PHE
147
A
ALA
148
n
171
ALA
148
A
n
172
149
A
n
173
150
A
n
174
151
A
n
175
152
A
n
176
153
A
n
177
154
A
n
178
155
A
n
179
156
A
n
180
157
A
n
181
158
A
n
182
159
A
n
183
160
A
GLU
161
n
184
GLU
161
A
VAL
162
n
185
VAL
162
A
ALA
163
n
186
ALA
163
A
THR
164
n
187
THR
164
A
ARG
165
n
188
ARG
165
A
TRP
166
n
189
TRP
166
A
TYR
167
n
190
TYR
167
A
ARG
168
n
191
ARG
168
A
ALA
169
n
192
ALA
169
A
PRO
170
n
193
PRO
170
A
GLU
171
n
194
GLU
171
A
LEU
172
n
195
LEU
172
A
LEU
173
n
196
LEU
173
A
VAL
174
n
197
VAL
174
A
GLY
175
n
198
GLY
175
A
ASP
176
n
199
ASP
176
A
VAL
177
n
200
VAL
177
A
LYS
178
n
201
LYS
178
A
TYR
179
n
202
TYR
179
A
GLY
180
n
203
GLY
180
A
LYS
181
n
204
LYS
181
A
ALA
182
n
205
ALA
182
A
VAL
183
n
206
VAL
183
A
ASP
184
n
207
ASP
184
A
VAL
185
n
208
VAL
185
A
TRP
186
n
209
TRP
186
A
ALA
187
n
210
ALA
187
A
ILE
188
n
211
ILE
188
A
GLY
189
n
212
GLY
189
A
CYS
190
n
213
CYS
190
A
LEU
191
n
214
LEU
191
A
VAL
192
n
215
VAL
192
A
THR
193
n
216
THR
193
A
GLU
194
n
217
GLU
194
A
MET
195
n
218
MET
195
A
PHE
196
n
219
PHE
196
A
MET
197
n
220
MET
197
A
GLY
198
n
221
GLY
198
A
GLU
199
n
222
GLU
199
A
PRO
200
n
223
PRO
200
A
LEU
201
n
224
LEU
201
A
PHE
202
n
225
PHE
202
A
PRO
203
n
226
PRO
203
A
GLY
204
n
227
GLY
204
A
ASP
205
n
228
ASP
205
A
SER
206
n
229
SER
206
A
ASP
207
n
230
ASP
207
A
ILE
208
n
231
ILE
208
A
ASP
209
n
232
ASP
209
A
GLN
210
n
233
GLN
210
A
LEU
211
n
234
LEU
211
A
TYR
212
n
235
TYR
212
A
HIS
213
n
236
HIS
213
A
ILE
214
n
237
ILE
214
A
MET
215
n
238
MET
215
A
MET
216
n
239
MET
216
A
CYS
217
n
240
CYS
217
A
LEU
218
n
241
LEU
218
A
GLY
219
n
242
GLY
219
A
ASN
220
n
243
ASN
220
A
LEU
221
n
244
LEU
221
A
ILE
222
n
245
ILE
222
A
PRO
223
n
246
PRO
223
A
ARG
224
n
247
ARG
224
A
HIS
225
n
248
HIS
225
A
GLN
226
n
249
GLN
226
A
GLU
227
n
250
GLU
227
A
LEU
228
n
251
LEU
228
A
PHE
229
n
252
PHE
229
A
ASN
230
n
253
ASN
230
A
LYS
231
n
254
LYS
231
A
ASN
232
n
255
ASN
232
A
PRO
233
n
256
PRO
233
A
VAL
234
n
257
VAL
234
A
PHE
235
n
258
PHE
235
A
ALA
236
n
259
ALA
236
A
GLY
237
n
260
GLY
237
A
VAL
238
n
261
VAL
238
A
ARG
239
n
262
ARG
239
A
LEU
240
n
263
LEU
240
A
PRO
241
n
264
PRO
241
A
GLU
242
n
265
GLU
242
A
ILE
243
n
266
ILE
243
A
LYS
244
n
267
LYS
244
A
GLU
245
n
268
GLU
245
A
ARG
246
n
269
ARG
246
A
GLU
247
n
270
GLU
247
A
PRO
248
n
271
PRO
248
A
LEU
249
n
272
LEU
249
A
GLU
250
n
273
GLU
250
A
ARG
251
n
274
ARG
251
A
ARG
252
n
275
ARG
252
A
TYR
253
n
276
TYR
253
A
PRO
254
n
277
PRO
254
A
LYS
255
n
278
LYS
255
A
LEU
256
n
279
LEU
256
A
SER
257
n
280
SER
257
A
GLU
258
n
281
GLU
258
A
VAL
259
n
282
VAL
259
A
VAL
260
n
283
VAL
260
A
ILE
261
n
284
ILE
261
A
ASP
262
n
285
ASP
262
A
LEU
263
n
286
LEU
263
A
ALA
264
n
287
ALA
264
A
LYS
265
n
288
LYS
265
A
LYS
266
n
289
LYS
266
A
CYS
267
n
290
CYS
267
A
LEU
268
n
291
LEU
268
A
HIS
269
n
292
HIS
269
A
ILE
270
n
293
ILE
270
A
ASP
271
n
294
ASP
271
A
PRO
272
n
295
PRO
272
A
ASP
273
n
296
ASP
273
A
LYS
274
n
297
LYS
274
A
ARG
275
n
298
ARG
275
A
PRO
276
n
299
PRO
276
A
PHE
277
n
300
PHE
277
A
CYS
278
n
301
CYS
278
A
ALA
279
n
302
ALA
279
A
GLU
280
n
303
GLU
280
A
LEU
281
n
304
LEU
281
A
LEU
282
n
305
LEU
282
A
HIS
283
n
306
HIS
283
A
HIS
284
n
307
HIS
284
A
ASP
285
n
308
ASP
285
A
PHE
286
n
309
PHE
286
A
PHE
287
n
310
PHE
287
A
GLN
288
n
311
GLN
288
A
MET
289
n
312
MET
289
A
ASP
290
n
313
ASP
290
A
GLY
291
n
314
GLY
291
A
PHE
292
n
315
PHE
292
A
ALA
293
n
316
ALA
293
A
GLU
294
n
317
GLU
294
A
ARG
295
n
318
ARG
295
A
PHE
296
n
319
PHE
296
A
SER
297
n
320
SER
297
A
GLN
298
n
321
GLN
298
A
GLU
299
n
322
GLU
299
A
LEU
300
n
323
LEU
300
A
GLN
301
n
324
GLN
301
A
LEU
302
n
325
LEU
302
A
n
326
303
A
n
327
304
A
n
328
305
A
n
329
306
A
n
330
307
A
n
331
308
A
0.2865
0.1649
0.3267
0.2296
0.3761
0.6576
0.0241
0.0941
-0.1880
-0.0020
0.0841
-0.0286
-0.0330
0.1439
-0.1083
0.0637
-0.0036
-0.0031
0.0487
-0.0498
0.1753
refined
29.6913
-0.3418
78.4371
X-RAY DIFFRACTION
1.6067
0.4730
0.3204
0.3998
0.1624
0.0824
-0.0520
0.3794
-0.3801
0.1083
0.1173
-0.0811
0.0192
0.0788
-0.0653
0.0730
-0.0222
0.0112
0.1328
-0.0798
0.1132
refined
42.1659
1.5063
78.6955
X-RAY DIFFRACTION
0.4510
0.2257
0.0044
0.3923
-0.0889
0.0312
0.0219
-0.0450
0.0161
-0.0198
-0.0245
0.0027
0.0174
-0.0036
0.0026
0.0494
-0.0032
0.0021
0.0467
-0.0044
0.0380
refined
34.9948
21.4350
80.3436
X-RAY DIFFRACTION
0.1987
-0.0279
0.0659
0.1512
-0.1553
0.8190
0.0082
0.0155
0.0705
0.0115
-0.0449
-0.0142
-0.0222
0.0156
0.0368
0.0410
-0.0063
-0.0042
0.0479
0.0182
0.0343
refined
42.7036
32.9002
73.0624
X-RAY DIFFRACTION
A
-4
A
34
X-RAY DIFFRACTION
1
A
35
A
85
X-RAY DIFFRACTION
2
A
86
A
165
X-RAY DIFFRACTION
3
A
166
A
303
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
7
A
N
LEU
30
A
O
LYS
20
A
O
LYS
43
A
N
CYS
21
A
N
CYS
44
A
O
VAL
30
A
O
VAL
53
A
N
PHE
35
A
N
PHE
58
A
O
TRP
76
A
O
TRP
99
A
O
VAL
79
A
O
VAL
102
A
N
LEU
67
A
N
LEU
90
A
N
HIS
85
A
N
HIS
108
A
O
VAL
134
A
O
VAL
157
A
N
LEU
133
A
N
LEU
156
A
O
LYS
141
A
O
LYS
164
1
A
CD
LYS
33
A
CD
LYS
56
1
Y
1
A
CE
LYS
33
A
CE
LYS
56
1
Y
1
A
NZ
LYS
33
A
NZ
LYS
56
1
Y
1
A
CD
LYS
42
A
CD
LYS
65
1
Y
1
A
CE
LYS
42
A
CE
LYS
65
1
Y
1
A
NZ
LYS
42
A
NZ
LYS
65
1
Y
1
A
CD
LYS
53
A
CD
LYS
76
1
Y
1
A
CE
LYS
53
A
CE
LYS
76
1
Y
1
A
NZ
LYS
53
A
NZ
LYS
76
1
Y
1
A
CE
LYS
71
A
CE
LYS
94
1
Y
1
A
NZ
LYS
71
A
NZ
LYS
94
1
Y
1
A
CZ
ARG
125
A
CZ
ARG
148
1
Y
1
A
NH1
ARG
125
A
NH1
ARG
148
1
Y
1
A
NH2
ARG
125
A
NH2
ARG
148
1
Y
1
A
CG
GLU
161
A
CG
GLU
184
1
Y
1
A
CD
GLU
161
A
CD
GLU
184
1
Y
1
A
OE1
GLU
161
A
OE1
GLU
184
1
Y
1
A
OE2
GLU
161
A
OE2
GLU
184
1
Y
1
A
CG1
VAL
162
A
CG1
VAL
185
1
Y
1
A
CG2
VAL
162
A
CG2
VAL
185
1
Y
1
A
CE
LYS
244
A
CE
LYS
267
1
Y
1
A
NZ
LYS
244
A
NZ
LYS
267
1
Y
1
A
CG
LEU
302
A
CG
LEU
325
1
Y
1
A
CD1
LEU
302
A
CD1
LEU
325
1
Y
1
A
CD2
LEU
302
A
CD2
LEU
325
1
Y
1
A
MET
-22
A
MET
1
1
Y
1
A
GLY
-21
A
GLY
2
1
Y
1
A
HIS
-20
A
HIS
3
1
Y
1
A
HIS
-19
A
HIS
4
1
Y
1
A
HIS
-18
A
HIS
5
1
Y
1
A
HIS
-17
A
HIS
6
1
Y
1
A
HIS
-16
A
HIS
7
1
Y
1
A
HIS
-15
A
HIS
8
1
Y
1
A
SER
-14
A
SER
9
1
Y
1
A
SER
-13
A
SER
10
1
Y
1
A
GLY
-12
A
GLY
11
1
Y
1
A
VAL
-11
A
VAL
12
1
Y
1
A
ASP
-10
A
ASP
13
1
Y
1
A
LEU
-9
A
LEU
14
1
Y
1
A
GLY
-8
A
GLY
15
1
Y
1
A
THR
-7
A
THR
16
1
Y
1
A
GLU
-6
A
GLU
17
1
Y
1
A
ASN
-5
A
ASN
18
1
Y
1
A
ARG
149
A
ARG
172
1
Y
1
A
THR
150
A
THR
173
1
Y
1
A
LEU
151
A
LEU
174
1
Y
1
A
ALA
152
A
ALA
175
1
Y
1
A
ALA
153
A
ALA
176
1
Y
1
A
PRO
154
A
PRO
177
1
Y
1
A
GLY
155
A
GLY
178
1
Y
1
A
GLU
156
A
GLU
179
1
Y
1
A
VAL
157
A
VAL
180
1
Y
1
A
TYR
158
A
TYR
181
1
Y
1
A
ASP
159
A
ASP
182
1
Y
1
A
ASP
160
A
ASP
183
1
Y
1
A
LYS
303
A
LYS
326
1
Y
1
A
VAL
304
A
VAL
327
1
Y
1
A
GLN
305
A
GLN
328
1
Y
1
A
LYS
306
A
LYS
329
1
Y
1
A
ASP
307
A
ASP
330
1
Y
1
A
ALA
308
A
ALA
331
1
Y
1
A
A
O
O
HOH
HOH
2062
2070
1.64
1
A
A
O
O
HOH
HOH
2073
2081
2.10
1
A
A
O
O
HOH
HOH
2089
2090
2.12
1
A
A
CG
CD2
HIS
HIS
60
60
0.057
0.009
1.354
1.411
N
1
A
A
CD2
O
HIS
HOH
85
2136
2.09
B
1_555
4_457
1
A
ASP
41
-68.88
96.11
1
A
LYS
73
56.60
-117.94
1
A
ARG
125
82.36
-14.07
1
A
LEU
268
-99.23
30.71
24.666
-0.55
0.00
0.00
1.14
0.00
-0.59
0.968
0.959
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.U VALUES WITH TLS ADDED. RESIDUES 149 TO 160 ARE DISORDERED RESIDUE HIS85 CONFORMATION B AND ASP84 CONFORMATION A MAY NOT BE OCCUPIED SIMULTANEOUSLY.
0.20820
0.18033
0.18178
1.53
53.78
3041
56974
5.1
99.01
2.880
0.052
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.070
0.073
0.80
0.80
1.20
PDB ENTRY 3NIZ
MAXIMUM LIKELIHOOD
MASK
1.53
53.78
259
2704
52
0
2393
0.014
0.020
2639
0.001
0.020
1865
1.563
1.976
3576
0.935
2.997
4554
5.509
5.000
331
37.518
24.286
133
13.981
15.000
495
19.580
15.000
17
0.098
0.200
378
0.008
0.020
2921
0.001
0.020
548
0.275
0.200
797
0.178
0.200
1838
0.182
0.200
1259
0.088
0.200
1258
0.146
0.200
46
0.301
0.200
41
0.213
0.200
59
0.161
0.200
4
5
7
9
11
0.396
0.395
1.573
174
3479
20
86.63
1.60
42.14
4AAA
53461
2.0
0.14
1
13.40
13.7
100.0
1.14
1.60
1.69
2.10
1
7.9
100.0
refinement
REFMAC
5.6.0117
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
Crystal structure of the human CDKL2 kinase domain
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
SER
0
A
SER
23
HELX_P
A
GLU
2
A
GLU
25
5
1
3
A
GLY
11
A
GLY
34
HELX_P
A
SER
14
A
SER
37
5
2
4
A
ASP
41
A
ASP
64
HELX_P
A
LEU
58
A
LEU
81
1
3
18
A
ILE
87
A
ILE
110
HELX_P
A
PHE
94
A
PHE
117
1
4
8
A
ASP
99
A
ASP
122
HELX_P
A
HIS
120
A
HIS
143
1
5
22
A
LYS
128
A
LYS
151
HELX_P
A
GLU
130
A
GLU
153
5
6
3
A
ALA
169
A
ALA
192
HELX_P
A
VAL
174
A
VAL
197
1
7
6
A
LYS
181
A
LYS
204
HELX_P
A
GLY
198
A
GLY
221
1
8
18
A
SER
206
A
SER
229
HELX_P
A
GLY
219
A
GLY
242
1
9
14
A
ILE
222
A
ILE
245
HELX_P
A
ASN
232
A
ASN
255
1
10
11
A
PRO
233
A
PRO
256
HELX_P
A
ALA
236
A
ALA
259
5
11
4
A
PRO
248
A
PRO
271
HELX_P
A
TYR
253
A
TYR
276
1
12
6
A
SER
257
A
SER
280
HELX_P
A
LEU
268
A
LEU
291
1
13
12
A
ASP
271
A
ASP
294
HELX_P
A
ARG
275
A
ARG
298
5
14
5
A
PHE
277
A
PHE
300
HELX_P
A
HIS
283
A
HIS
306
5
15
7
A
HIS
284
A
HIS
307
HELX_P
A
MET
289
A
MET
312
1
16
6
A
GLY
291
A
GLY
314
HELX_P
A
LEU
302
A
LEU
325
1
17
12
TRANSFERASE
TRANSFERASE, PHOSPHO-MIMETIC
CDKL2_HUMAN
UNP
1
Q92772
1
308
4AAA
1
308
Q92772
A
1
24
331
1
expression tag
MET
-22
4AAA
A
Q92772
UNP
1
1
expression tag
GLY
-21
4AAA
A
Q92772
UNP
2
1
expression tag
HIS
-20
4AAA
A
Q92772
UNP
3
1
expression tag
HIS
-19
4AAA
A
Q92772
UNP
4
1
expression tag
HIS
-18
4AAA
A
Q92772
UNP
5
1
expression tag
HIS
-17
4AAA
A
Q92772
UNP
6
1
expression tag
HIS
-16
4AAA
A
Q92772
UNP
7
1
expression tag
HIS
-15
4AAA
A
Q92772
UNP
8
1
expression tag
SER
-14
4AAA
A
Q92772
UNP
9
1
expression tag
SER
-13
4AAA
A
Q92772
UNP
10
1
expression tag
GLY
-12
4AAA
A
Q92772
UNP
11
1
expression tag
VAL
-11
4AAA
A
Q92772
UNP
12
1
expression tag
ASP
-10
4AAA
A
Q92772
UNP
13
1
expression tag
LEU
-9
4AAA
A
Q92772
UNP
14
1
expression tag
GLY
-8
4AAA
A
Q92772
UNP
15
1
expression tag
THR
-7
4AAA
A
Q92772
UNP
16
1
expression tag
GLU
-6
4AAA
A
Q92772
UNP
17
1
expression tag
ASN
-5
4AAA
A
Q92772
UNP
18
1
expression tag
LEU
-4
4AAA
A
Q92772
UNP
19
1
expression tag
TYR
-3
4AAA
A
Q92772
UNP
20
1
expression tag
PHE
-2
4AAA
A
Q92772
UNP
21
1
expression tag
GLN
-1
4AAA
A
Q92772
UNP
22
1
expression tag
SER
0
4AAA
A
Q92772
UNP
23
1
THR
engineered mutation
ASP
159
4AAA
A
Q92772
UNP
159
182
1
TYR
engineered mutation
GLU
161
4AAA
A
Q92772
UNP
161
184
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
4
A
TYR
27
A
LEU
9
A
LEU
32
A
VAL
18
A
VAL
41
A
ASN
23
A
ASN
46
A
ILE
29
A
ILE
52
A
LEU
36
A
LEU
59
A
ARG
75
A
ARG
98
A
GLU
81
A
GLU
104
A
LEU
66
A
LEU
89
A
LYS
72
A
LYS
95
A
HIS
85
A
HIS
108
A
THR
86
A
THR
109
A
ILE
132
A
ILE
155
A
VAL
134
A
VAL
157
A
VAL
140
A
VAL
163
A
LEU
142
A
LEU
165
BINDING SITE FOR RESIDUE DKI A 500
A
DKI
500
Software
19
BINDING SITE FOR RESIDUE EDO A 501
A
EDO
501
Software
7
BINDING SITE FOR RESIDUE EDO A 502
A
EDO
502
Software
4
BINDING SITE FOR RESIDUE EDO A 503
A
EDO
503
Software
5
BINDING SITE FOR RESIDUE EDO A 504
A
EDO
504
Software
4
BINDING SITE FOR RESIDUE EDO A 505
A
EDO
505
Software
3
BINDING SITE FOR RESIDUE EDO A 506
A
EDO
506
Software
6
A
VAL
10
A
VAL
33
19
1_555
A
GLY
11
A
GLY
34
19
1_555
A
TYR
15
A
TYR
38
19
1_555
A
VAL
18
A
VAL
41
19
1_555
A
VAL
64
A
VAL
87
19
1_555
A
GLU
81
A
GLU
104
19
1_555
A
PHE
82
A
PHE
105
19
1_555
A
VAL
83
A
VAL
106
19
1_555
A
ASP
84
A
ASP
107
19
1_555
A
THR
86
A
THR
109
19
1_555
A
ASP
89
A
ASP
112
19
1_555
A
GLU
130
A
GLU
153
19
1_555
A
LEU
133
A
LEU
156
19
1_555
A
CYS
143
A
CYS
166
19
1_555
A
ASP
144
A
ASP
167
19
1_555
A
EDO
501
C
EDO
19
1_555
A
HOH
2016
I
HOH
19
1_555
A
HOH
2022
I
HOH
19
1_555
A
HOH
2024
I
HOH
19
1_555
A
PHE
80
A
PHE
103
7
1_555
A
CYS
143
A
CYS
166
7
1_555
A
ASP
144
A
ASP
167
7
1_555
A
DKI
500
B
DKI
7
1_555
A
HOH
2158
I
HOH
7
1_555
A
HOH
2257
I
HOH
7
1_555
A
HOH
2258
I
HOH
7
1_555
A
ASP
89
A
ASP
112
4
1_555
A
GLU
92
A
GLU
115
4
1_555
A
SER
119
A
SER
142
4
4_457
A
HIS
120
A
HIS
143
4
4_457
A
ILE
243
A
ILE
266
5
1_555
A
LYS
244
A
LYS
267
5
1_555
A
ARG
246
A
ARG
269
5
1_555
A
HOH
2199
I
HOH
5
1_555
A
HOH
2212
I
HOH
5
1_555
A
ASN
220
A
ASN
243
4
1_555
A
LEU
221
A
LEU
244
4
1_555
A
PRO
223
A
PRO
246
4
1_555
A
HOH
2095
I
HOH
4
1_555
A
MET
1
A
MET
24
3
1_555
A
TYR
4
A
TYR
27
3
1_555
A
ASN
6
A
ASN
29
3
1_555
A
GLY
27
A
GLY
50
6
1_555
A
ILE
29
A
ILE
52
6
1_555
A
ASP
273
A
ASP
296
6
4_457
A
PHE
277
A
PHE
300
6
4_457
A
HOH
2046
I
HOH
6
1_555
A
HOH
2234
I
HOH
6
4_457
19
P 21 21 21