0.029289 0.000000 0.000000 0.000000 0.013720 0.000000 0.000000 0.000000 0.013652 0.00000 0.00000 0.00000 Garcia-Nafria, J. Baumgart, M. Turkenburg, J.P. Wilkinson, A.J. Bott, M. Wilson, K.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 34.142 72.886 73.250 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Au 1 196.967 GOLD ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 288 15800 10.1074/JBC.M113.462440 23589369 Crystal and Solution Studies Reveal that the Transcriptional Regulator Acnr of Corynebacterium Glutamicum is Regulated by Citrate:Mg2+ Binding to a Non-Canonical Pocket. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-04-17 ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9334 1.0 ID14-1 ESRF 0.9334 SYNCHROTRON ESRF BEAMLINE ID14-1 21511.338 HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR RESIDUES 2-188 1 man polymer 196.967 GOLD ION 4 syn non-polymer 18.015 water 49 nat water no no GHMVSVAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSEN GLVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVL DGFISRLATGASTEGLSEVLDLVEGTVRKRD GHMVSVAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSEN GLVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVL DGFISRLATGASTEGLSEVLDLVEGTVRKRD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1718 CORYNEBACTERIUM GLUTAMICUM 562 ESCHERICHIA COLI 1 2.29 46 NONE 4 1 M AMMONIUM PHOSPHATE, 100 MM SODIUM CITRATE PH 5.6 repository Initial release Database references Other Structure summary Database references 1 0 2012-12-26 1 1 2013-05-01 1 2 2013-06-19 STRUCTURE OF THE C. GLUTAMICUM ACNR CRYSTAL FORM II STRUCTURE OF THE C. GLUTAMICUM ACNR CRYSTAL FORM I PDBE Y PDBE 2011-12-14 REL AU GOLD ION HOH water AU 1187 2 AU AU 1187 A AU 1188 2 AU AU 1188 A AU 1189 2 AU AU 1189 A AU 1190 2 AU AU 1190 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A n 7 4 A n 8 5 A n 9 6 A n 10 7 A n 11 8 A n 12 9 A n 13 10 A ASN 11 n 14 ASN 11 A SER 12 n 15 SER 12 A ARG 13 n 16 ARG 13 A GLN 14 n 17 GLN 14 A GLU 15 n 18 GLU 15 A ILE 16 n 19 ILE 16 A LEU 17 n 20 LEU 17 A GLU 18 n 21 GLU 18 A GLY 19 n 22 GLY 19 A ALA 20 n 23 ALA 20 A ARG 21 n 24 ARG 21 A ARG 22 n 25 ARG 22 A CYS 23 n 26 CYS 23 A PHE 24 n 27 PHE 24 A ALA 25 n 28 ALA 25 A GLU 26 n 29 GLU 26 A HIS 27 n 30 HIS 27 A GLY 28 n 31 GLY 28 A TYR 29 n 32 TYR 29 A GLU 30 n 33 GLU 30 A GLY 31 n 34 GLY 31 A ALA 32 n 35 ALA 32 A THR 33 n 36 THR 33 A VAL 34 n 37 VAL 34 A ARG 35 n 38 ARG 35 A ARG 36 n 39 ARG 36 A LEU 37 n 40 LEU 37 A GLU 38 n 41 GLU 38 A GLU 39 n 42 GLU 39 A ALA 40 n 43 ALA 40 A THR 41 n 44 THR 41 A GLY 42 n 45 GLY 42 A LYS 43 n 46 LYS 43 A SER 44 n 47 SER 44 A ARG 45 n 48 ARG 45 A GLY 46 n 49 GLY 46 A ALA 47 n 50 ALA 47 A ILE 48 n 51 ILE 48 A PHE 49 n 52 PHE 49 A HIS 50 n 53 HIS 50 A HIS 51 n 54 HIS 51 A PHE 52 n 55 PHE 52 A GLY 53 n 56 GLY 53 A ASP 54 n 57 ASP 54 A LYS 55 n 58 LYS 55 A GLU 56 n 59 GLU 56 A ASN 57 n 60 ASN 57 A LEU 58 n 61 LEU 58 A PHE 59 n 62 PHE 59 A LEU 60 n 63 LEU 60 A ALA 61 n 64 ALA 61 A LEU 62 n 65 LEU 62 A ALA 63 n 66 ALA 63 A ARG 64 n 67 ARG 64 A GLU 65 n 68 GLU 65 A ASP 66 n 69 ASP 66 A ALA 67 n 70 ALA 67 A ALA 68 n 71 ALA 68 A ARG 69 n 72 ARG 69 A MET 70 n 73 MET 70 A ALA 71 n 74 ALA 71 A GLU 72 n 75 GLU 72 A VAL 73 n 76 VAL 73 A VAL 74 n 77 VAL 74 A SER 75 n 78 SER 75 A GLU 76 n 79 GLU 76 A ASN 77 n 80 ASN 77 A GLY 78 n 81 GLY 78 A LEU 79 n 82 LEU 79 A VAL 80 n 83 VAL 80 A GLU 81 n 84 GLU 81 A VAL 82 n 85 VAL 82 A MET 83 n 86 MET 83 A ARG 84 n 87 ARG 84 A GLY 85 n 88 GLY 85 A MET 86 n 89 MET 86 A LEU 87 n 90 LEU 87 A GLU 88 n 91 GLU 88 A ASP 89 n 92 ASP 89 A PRO 90 n 93 PRO 90 A GLU 91 n 94 GLU 91 A ARG 92 n 95 ARG 92 A TYR 93 n 96 TYR 93 A ASP 94 n 97 ASP 94 A TRP 95 n 98 TRP 95 A MET 96 n 99 MET 96 A SER 97 n 100 SER 97 A VAL 98 n 101 VAL 98 A ARG 99 n 102 ARG 99 A LEU 100 n 103 LEU 100 A GLU 101 n 104 GLU 101 A ILE 102 n 105 ILE 102 A SER 103 n 106 SER 103 A LYS 104 n 107 LYS 104 A GLN 105 n 108 GLN 105 A LEU 106 n 109 LEU 106 A ARG 107 n 110 ARG 107 A THR 108 n 111 THR 108 A ASP 109 n 112 ASP 109 A PRO 110 n 113 PRO 110 A VAL 111 n 114 VAL 111 A PHE 112 n 115 PHE 112 A ARG 113 n 116 ARG 113 A ALA 114 n 117 ALA 114 A LYS 115 n 118 LYS 115 A TRP 116 n 119 TRP 116 A ILE 117 n 120 ILE 117 A ASP 118 n 121 ASP 118 A HIS 119 n 122 HIS 119 A GLN 120 n 123 GLN 120 A SER 121 n 124 SER 121 A VAL 122 n 125 VAL 122 A LEU 123 n 126 LEU 123 A ASP 124 n 127 ASP 124 A GLU 125 n 128 GLU 125 A ALA 126 n 129 ALA 126 A VAL 127 n 130 VAL 127 A ARG 128 n 131 ARG 128 A VAL 129 n 132 VAL 129 A ARG 130 n 133 ARG 130 A LEU 131 n 134 LEU 131 A SER 132 n 135 SER 132 A ARG 133 n 136 ARG 133 A ASN 134 n 137 ASN 134 A VAL 135 n 138 VAL 135 A ASP 136 n 139 ASP 136 A LYS 137 n 140 LYS 137 A GLY 138 n 141 GLY 138 A GLN 139 n 142 GLN 139 A MET 140 n 143 MET 140 A ARG 141 n 144 ARG 141 A THR 142 n 145 THR 142 A ASP 143 n 146 ASP 143 A VAL 144 n 147 VAL 144 A PRO 145 n 148 PRO 145 A ILE 146 n 149 ILE 146 A GLU 147 n 150 GLU 147 A VAL 148 n 151 VAL 148 A LEU 149 n 152 LEU 149 A HIS 150 n 153 HIS 150 A THR 151 n 154 THR 151 A PHE 152 n 155 PHE 152 A LEU 153 n 156 LEU 153 A GLU 154 n 157 GLU 154 A THR 155 n 158 THR 155 A VAL 156 n 159 VAL 156 A LEU 157 n 160 LEU 157 A ASP 158 n 161 ASP 158 A GLY 159 n 162 GLY 159 A PHE 160 n 163 PHE 160 A ILE 161 n 164 ILE 161 A SER 162 n 165 SER 162 A ARG 163 n 166 ARG 163 A LEU 164 n 167 LEU 164 A ALA 165 n 168 ALA 165 A THR 166 n 169 THR 166 A GLY 167 n 170 GLY 167 A ALA 168 n 171 ALA 168 A SER 169 n 172 SER 169 A THR 170 n 173 THR 170 A GLU 171 n 174 GLU 171 A GLY 172 n 175 GLY 172 A LEU 173 n 176 LEU 173 A SER 174 n 177 SER 174 A GLU 175 n 178 GLU 175 A VAL 176 n 179 VAL 176 A LEU 177 n 180 LEU 177 A ASP 178 n 181 ASP 178 A LEU 179 n 182 LEU 179 A VAL 180 n 183 VAL 180 A GLU 181 n 184 GLU 181 A GLY 182 n 185 GLY 182 A THR 183 n 186 THR 183 A VAL 184 n 187 VAL 184 A ARG 185 n 188 ARG 185 A LYS 186 n 189 LYS 186 A n 190 187 A n 191 188 A author_and_software_defined_assembly PISA 2 dimeric 4100 -53.9 16160 A CYS 23 A SG CYS 26 1_555 A AU 1189 D AU AU 1_555 A HIS 27 A ND1 HIS 30 1_555 151.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_455 -x-1,-y,z crystal symmetry operation -34.1420000000 0.0000000000 0.0000000000 1 A GLY -2 A GLY 1 1 Y 1 A HIS -1 A HIS 2 1 Y 1 A MET 0 A MET 3 1 Y 1 A VAL 1 A VAL 4 1 Y 1 A SER 2 A SER 5 1 Y 1 A VAL 3 A VAL 6 1 Y 1 A ALA 4 A ALA 7 1 Y 1 A ALA 5 A ALA 8 1 Y 1 A GLY 6 A GLY 9 1 Y 1 A ASP 7 A ASP 10 1 Y 1 A LYS 8 A LYS 11 1 Y 1 A PRO 9 A PRO 12 1 Y 1 A THR 10 A THR 13 1 Y 1 A ARG 187 A ARG 190 1 Y 1 A ASP 188 A ASP 191 1 Y 18.191 0.88 0.00 0.00 -1.00 0.00 0.12 0.929 0.880 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. 0.26336 0.19454 0.19792 2.54 73.25 301 6151 4.7 99.88 11.151 0.248 RANDOM 1 THROUGHOUT SAD 1.046 0.330 0.80 0.80 1.20 NONE MAXIMUM LIKELIHOOD MASK 2.54 73.25 49 1454 4 0 1401 0.016 0.021 1421 0.001 0.020 999 1.355 1.956 1912 0.930 3.000 2400 4.983 5.000 175 37.030 22.703 74 17.536 15.000 260 21.288 15.000 19 0.074 0.200 213 0.004 0.020 1594 0.001 0.020 311 0.352 0.192 2.605 21 388 20 99.03 2.54 73.25 4AC6 6461 1.0 0.07 1 47.90 8.8 100.0 0.15 2.54 2.58 21.90 1 8.4 100.0 refinement REFMAC 5.6.0116 data reduction HKL-2000 data scaling SCALEPACK phasing SHELXCDE HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR Corynebacterium glutamicum AcnR AU derivative structure 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N A ASN 11 A ASN 14 HELX_P A ALA 32 A ALA 35 1 1 22 A THR 33 A THR 36 HELX_P A GLY 42 A GLY 45 1 2 10 A SER 44 A SER 47 HELX_P A GLY 53 A GLY 56 1 3 10 A ASP 54 A ASP 57 HELX_P A LEU 87 A LEU 90 1 4 34 A GLU 88 A GLU 91 HELX_P A GLU 91 A GLU 94 5 5 4 A ARG 92 A ARG 95 HELX_P A ILE 102 A ILE 105 1 6 11 A LYS 104 A LYS 107 HELX_P A ASP 109 A ASP 112 1 7 6 A ASP 109 A ASP 112 HELX_P A LYS 137 A LYS 140 1 8 29 A PRO 145 A PRO 148 HELX_P A THR 166 A THR 169 1 9 22 A GLY 172 A GLY 175 HELX_P A ARG 185 A ARG 188 1 10 14 metalc 2.538 A AU 1189 D AU AU 1_555 A CYS 23 A SG CYS 26 1_555 metalc 1.896 A AU 1189 D AU AU 1_555 A HIS 27 A ND1 HIS 30 1_555 TRANSCRIPTION TRANSCRIPTION, ACONITASE, CITRATE, TETR SUPERFAMILY ACNR_CORGL UNP 1 Q8NQ97 2 188 4AC6 2 188 Q8NQ97 A 1 5 191 1 expression tag GLY -2 4AC6 A Q8NQ97 UNP 1 1 expression tag HIS -1 4AC6 A Q8NQ97 UNP 2 1 expression tag MET 0 4AC6 A Q8NQ97 UNP 3 1 expression tag VAL 1 4AC6 A Q8NQ97 UNP 4 BINDING SITE FOR RESIDUE AU A 1187 Software 3 BINDING SITE FOR RESIDUE AU A 1189 Software 2 BINDING SITE FOR RESIDUE AU A 1190 Software 2 A VAL 73 A VAL 76 3 1_555 A VAL 82 A VAL 85 3 1_555 A ASP 136 A ASP 139 3 4_546 A CYS 23 A CYS 26 2 1_555 A HIS 27 A HIS 30 2 1_555 A LEU 131 A LEU 134 2 1_555 A LEU 153 A LEU 156 2 1_555 18 P 21 21 2