0.029289
0.000000
0.000000
0.000000
0.013720
0.000000
0.000000
0.000000
0.013652
0.00000
0.00000
0.00000
Garcia-Nafria, J.
Baumgart, M.
Turkenburg, J.P.
Wilkinson, A.J.
Bott, M.
Wilson, K.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
34.142
72.886
73.250
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Au 1
196.967
GOLD ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
288
15800
10.1074/JBC.M113.462440
23589369
Crystal and Solution Studies Reveal that the Transcriptional Regulator Acnr of Corynebacterium Glutamicum is Regulated by Citrate:Mg2+ Binding to a Non-Canonical Pocket.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-04-17
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9334
1.0
ID14-1
ESRF
0.9334
SYNCHROTRON
ESRF BEAMLINE ID14-1
21511.338
HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR
RESIDUES 2-188
1
man
polymer
196.967
GOLD ION
4
syn
non-polymer
18.015
water
49
nat
water
no
no
GHMVSVAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSEN
GLVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVL
DGFISRLATGASTEGLSEVLDLVEGTVRKRD
GHMVSVAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSEN
GLVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVL
DGFISRLATGASTEGLSEVLDLVEGTVRKRD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1718
CORYNEBACTERIUM GLUTAMICUM
562
ESCHERICHIA COLI
1
2.29
46
NONE
4
1 M AMMONIUM PHOSPHATE, 100 MM SODIUM CITRATE PH 5.6
repository
Initial release
Database references
Other
Structure summary
Database references
1
0
2012-12-26
1
1
2013-05-01
1
2
2013-06-19
STRUCTURE OF THE C. GLUTAMICUM ACNR CRYSTAL FORM II
STRUCTURE OF THE C. GLUTAMICUM ACNR CRYSTAL FORM I
PDBE
Y
PDBE
2011-12-14
REL
AU
GOLD ION
HOH
water
AU
1187
2
AU
AU
1187
A
AU
1188
2
AU
AU
1188
A
AU
1189
2
AU
AU
1189
A
AU
1190
2
AU
AU
1190
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
n
5
2
A
n
6
3
A
n
7
4
A
n
8
5
A
n
9
6
A
n
10
7
A
n
11
8
A
n
12
9
A
n
13
10
A
ASN
11
n
14
ASN
11
A
SER
12
n
15
SER
12
A
ARG
13
n
16
ARG
13
A
GLN
14
n
17
GLN
14
A
GLU
15
n
18
GLU
15
A
ILE
16
n
19
ILE
16
A
LEU
17
n
20
LEU
17
A
GLU
18
n
21
GLU
18
A
GLY
19
n
22
GLY
19
A
ALA
20
n
23
ALA
20
A
ARG
21
n
24
ARG
21
A
ARG
22
n
25
ARG
22
A
CYS
23
n
26
CYS
23
A
PHE
24
n
27
PHE
24
A
ALA
25
n
28
ALA
25
A
GLU
26
n
29
GLU
26
A
HIS
27
n
30
HIS
27
A
GLY
28
n
31
GLY
28
A
TYR
29
n
32
TYR
29
A
GLU
30
n
33
GLU
30
A
GLY
31
n
34
GLY
31
A
ALA
32
n
35
ALA
32
A
THR
33
n
36
THR
33
A
VAL
34
n
37
VAL
34
A
ARG
35
n
38
ARG
35
A
ARG
36
n
39
ARG
36
A
LEU
37
n
40
LEU
37
A
GLU
38
n
41
GLU
38
A
GLU
39
n
42
GLU
39
A
ALA
40
n
43
ALA
40
A
THR
41
n
44
THR
41
A
GLY
42
n
45
GLY
42
A
LYS
43
n
46
LYS
43
A
SER
44
n
47
SER
44
A
ARG
45
n
48
ARG
45
A
GLY
46
n
49
GLY
46
A
ALA
47
n
50
ALA
47
A
ILE
48
n
51
ILE
48
A
PHE
49
n
52
PHE
49
A
HIS
50
n
53
HIS
50
A
HIS
51
n
54
HIS
51
A
PHE
52
n
55
PHE
52
A
GLY
53
n
56
GLY
53
A
ASP
54
n
57
ASP
54
A
LYS
55
n
58
LYS
55
A
GLU
56
n
59
GLU
56
A
ASN
57
n
60
ASN
57
A
LEU
58
n
61
LEU
58
A
PHE
59
n
62
PHE
59
A
LEU
60
n
63
LEU
60
A
ALA
61
n
64
ALA
61
A
LEU
62
n
65
LEU
62
A
ALA
63
n
66
ALA
63
A
ARG
64
n
67
ARG
64
A
GLU
65
n
68
GLU
65
A
ASP
66
n
69
ASP
66
A
ALA
67
n
70
ALA
67
A
ALA
68
n
71
ALA
68
A
ARG
69
n
72
ARG
69
A
MET
70
n
73
MET
70
A
ALA
71
n
74
ALA
71
A
GLU
72
n
75
GLU
72
A
VAL
73
n
76
VAL
73
A
VAL
74
n
77
VAL
74
A
SER
75
n
78
SER
75
A
GLU
76
n
79
GLU
76
A
ASN
77
n
80
ASN
77
A
GLY
78
n
81
GLY
78
A
LEU
79
n
82
LEU
79
A
VAL
80
n
83
VAL
80
A
GLU
81
n
84
GLU
81
A
VAL
82
n
85
VAL
82
A
MET
83
n
86
MET
83
A
ARG
84
n
87
ARG
84
A
GLY
85
n
88
GLY
85
A
MET
86
n
89
MET
86
A
LEU
87
n
90
LEU
87
A
GLU
88
n
91
GLU
88
A
ASP
89
n
92
ASP
89
A
PRO
90
n
93
PRO
90
A
GLU
91
n
94
GLU
91
A
ARG
92
n
95
ARG
92
A
TYR
93
n
96
TYR
93
A
ASP
94
n
97
ASP
94
A
TRP
95
n
98
TRP
95
A
MET
96
n
99
MET
96
A
SER
97
n
100
SER
97
A
VAL
98
n
101
VAL
98
A
ARG
99
n
102
ARG
99
A
LEU
100
n
103
LEU
100
A
GLU
101
n
104
GLU
101
A
ILE
102
n
105
ILE
102
A
SER
103
n
106
SER
103
A
LYS
104
n
107
LYS
104
A
GLN
105
n
108
GLN
105
A
LEU
106
n
109
LEU
106
A
ARG
107
n
110
ARG
107
A
THR
108
n
111
THR
108
A
ASP
109
n
112
ASP
109
A
PRO
110
n
113
PRO
110
A
VAL
111
n
114
VAL
111
A
PHE
112
n
115
PHE
112
A
ARG
113
n
116
ARG
113
A
ALA
114
n
117
ALA
114
A
LYS
115
n
118
LYS
115
A
TRP
116
n
119
TRP
116
A
ILE
117
n
120
ILE
117
A
ASP
118
n
121
ASP
118
A
HIS
119
n
122
HIS
119
A
GLN
120
n
123
GLN
120
A
SER
121
n
124
SER
121
A
VAL
122
n
125
VAL
122
A
LEU
123
n
126
LEU
123
A
ASP
124
n
127
ASP
124
A
GLU
125
n
128
GLU
125
A
ALA
126
n
129
ALA
126
A
VAL
127
n
130
VAL
127
A
ARG
128
n
131
ARG
128
A
VAL
129
n
132
VAL
129
A
ARG
130
n
133
ARG
130
A
LEU
131
n
134
LEU
131
A
SER
132
n
135
SER
132
A
ARG
133
n
136
ARG
133
A
ASN
134
n
137
ASN
134
A
VAL
135
n
138
VAL
135
A
ASP
136
n
139
ASP
136
A
LYS
137
n
140
LYS
137
A
GLY
138
n
141
GLY
138
A
GLN
139
n
142
GLN
139
A
MET
140
n
143
MET
140
A
ARG
141
n
144
ARG
141
A
THR
142
n
145
THR
142
A
ASP
143
n
146
ASP
143
A
VAL
144
n
147
VAL
144
A
PRO
145
n
148
PRO
145
A
ILE
146
n
149
ILE
146
A
GLU
147
n
150
GLU
147
A
VAL
148
n
151
VAL
148
A
LEU
149
n
152
LEU
149
A
HIS
150
n
153
HIS
150
A
THR
151
n
154
THR
151
A
PHE
152
n
155
PHE
152
A
LEU
153
n
156
LEU
153
A
GLU
154
n
157
GLU
154
A
THR
155
n
158
THR
155
A
VAL
156
n
159
VAL
156
A
LEU
157
n
160
LEU
157
A
ASP
158
n
161
ASP
158
A
GLY
159
n
162
GLY
159
A
PHE
160
n
163
PHE
160
A
ILE
161
n
164
ILE
161
A
SER
162
n
165
SER
162
A
ARG
163
n
166
ARG
163
A
LEU
164
n
167
LEU
164
A
ALA
165
n
168
ALA
165
A
THR
166
n
169
THR
166
A
GLY
167
n
170
GLY
167
A
ALA
168
n
171
ALA
168
A
SER
169
n
172
SER
169
A
THR
170
n
173
THR
170
A
GLU
171
n
174
GLU
171
A
GLY
172
n
175
GLY
172
A
LEU
173
n
176
LEU
173
A
SER
174
n
177
SER
174
A
GLU
175
n
178
GLU
175
A
VAL
176
n
179
VAL
176
A
LEU
177
n
180
LEU
177
A
ASP
178
n
181
ASP
178
A
LEU
179
n
182
LEU
179
A
VAL
180
n
183
VAL
180
A
GLU
181
n
184
GLU
181
A
GLY
182
n
185
GLY
182
A
THR
183
n
186
THR
183
A
VAL
184
n
187
VAL
184
A
ARG
185
n
188
ARG
185
A
LYS
186
n
189
LYS
186
A
n
190
187
A
n
191
188
A
author_and_software_defined_assembly
PISA
2
dimeric
4100
-53.9
16160
A
CYS
23
A
SG
CYS
26
1_555
A
AU
1189
D
AU
AU
1_555
A
HIS
27
A
ND1
HIS
30
1_555
151.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_455
-x-1,-y,z
crystal symmetry operation
-34.1420000000
0.0000000000
0.0000000000
1
A
GLY
-2
A
GLY
1
1
Y
1
A
HIS
-1
A
HIS
2
1
Y
1
A
MET
0
A
MET
3
1
Y
1
A
VAL
1
A
VAL
4
1
Y
1
A
SER
2
A
SER
5
1
Y
1
A
VAL
3
A
VAL
6
1
Y
1
A
ALA
4
A
ALA
7
1
Y
1
A
ALA
5
A
ALA
8
1
Y
1
A
GLY
6
A
GLY
9
1
Y
1
A
ASP
7
A
ASP
10
1
Y
1
A
LYS
8
A
LYS
11
1
Y
1
A
PRO
9
A
PRO
12
1
Y
1
A
THR
10
A
THR
13
1
Y
1
A
ARG
187
A
ARG
190
1
Y
1
A
ASP
188
A
ASP
191
1
Y
18.191
0.88
0.00
0.00
-1.00
0.00
0.12
0.929
0.880
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.
0.26336
0.19454
0.19792
2.54
73.25
301
6151
4.7
99.88
11.151
0.248
RANDOM
1
THROUGHOUT
SAD
1.046
0.330
0.80
0.80
1.20
NONE
MAXIMUM LIKELIHOOD
MASK
2.54
73.25
49
1454
4
0
1401
0.016
0.021
1421
0.001
0.020
999
1.355
1.956
1912
0.930
3.000
2400
4.983
5.000
175
37.030
22.703
74
17.536
15.000
260
21.288
15.000
19
0.074
0.200
213
0.004
0.020
1594
0.001
0.020
311
0.352
0.192
2.605
21
388
20
99.03
2.54
73.25
4AC6
6461
1.0
0.07
1
47.90
8.8
100.0
0.15
2.54
2.58
21.90
1
8.4
100.0
refinement
REFMAC
5.6.0116
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
SHELXCDE
HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR
Corynebacterium glutamicum AcnR AU derivative structure
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
ASN
11
A
ASN
14
HELX_P
A
ALA
32
A
ALA
35
1
1
22
A
THR
33
A
THR
36
HELX_P
A
GLY
42
A
GLY
45
1
2
10
A
SER
44
A
SER
47
HELX_P
A
GLY
53
A
GLY
56
1
3
10
A
ASP
54
A
ASP
57
HELX_P
A
LEU
87
A
LEU
90
1
4
34
A
GLU
88
A
GLU
91
HELX_P
A
GLU
91
A
GLU
94
5
5
4
A
ARG
92
A
ARG
95
HELX_P
A
ILE
102
A
ILE
105
1
6
11
A
LYS
104
A
LYS
107
HELX_P
A
ASP
109
A
ASP
112
1
7
6
A
ASP
109
A
ASP
112
HELX_P
A
LYS
137
A
LYS
140
1
8
29
A
PRO
145
A
PRO
148
HELX_P
A
THR
166
A
THR
169
1
9
22
A
GLY
172
A
GLY
175
HELX_P
A
ARG
185
A
ARG
188
1
10
14
metalc
2.538
A
AU
1189
D
AU
AU
1_555
A
CYS
23
A
SG
CYS
26
1_555
metalc
1.896
A
AU
1189
D
AU
AU
1_555
A
HIS
27
A
ND1
HIS
30
1_555
TRANSCRIPTION
TRANSCRIPTION, ACONITASE, CITRATE, TETR SUPERFAMILY
ACNR_CORGL
UNP
1
Q8NQ97
2
188
4AC6
2
188
Q8NQ97
A
1
5
191
1
expression tag
GLY
-2
4AC6
A
Q8NQ97
UNP
1
1
expression tag
HIS
-1
4AC6
A
Q8NQ97
UNP
2
1
expression tag
MET
0
4AC6
A
Q8NQ97
UNP
3
1
expression tag
VAL
1
4AC6
A
Q8NQ97
UNP
4
BINDING SITE FOR RESIDUE AU A 1187
Software
3
BINDING SITE FOR RESIDUE AU A 1189
Software
2
BINDING SITE FOR RESIDUE AU A 1190
Software
2
A
VAL
73
A
VAL
76
3
1_555
A
VAL
82
A
VAL
85
3
1_555
A
ASP
136
A
ASP
139
3
4_546
A
CYS
23
A
CYS
26
2
1_555
A
HIS
27
A
HIS
30
2
1_555
A
LEU
131
A
LEU
134
2
1_555
A
LEU
153
A
LEU
156
2
1_555
18
P 21 21 2