0.020895
0.012064
0.000000
0.000000
0.024127
0.000000
0.000000
0.000000
0.005219
0.00000
0.00000
0.00000
Luis, A.S.
Venditto, I.
Prates, J.A.M.
Ferreira, L.M.A.
Gilbert, H.J.
Fontes, C.M.G.A.
Najmudin, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
47.859
47.859
191.598
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
288
4799
10.1074/JBC.M112.432781
23229556
Understanding How Non-Catalytic Carbohydrate Binding Modules Can Display Specificity for Xyloglucan.
2013
DK
Acta Crystallogr.,Sect.F
1744-3091
67
491
10.1107/S1744309111004246
21505249
Overproduction, Purification, Crystallization and Preliminary X-Ray Characterization of a Novel Carbohydrate-Binding Module of Endoglucanase Cel5A from Eubacterium Cellulosolvens.
2011
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-09-24
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.9793
1.0
0.97934
1.0
0.9769
1.0
ID23-1
ESRF
0.9793, 0.97934, 0.9769
SYNCHROTRON
ESRF BEAMLINE ID23-1
14879.080
ENDOGLUCANASE CEL5A
CARBOHYDRATE BINDING MODULE, RESIDUES 37-170
1
man
polymer
18.015
water
92
nat
water
no
yes
ASGDIVLFSGSKHVEFTDWGGTDWPSAYELQPPYQT(MSE)PFDLNKNFEIKVDYSGADIVLIFARWEHGSKPQIWAQIS
PYYVVDGTAVFTKEQIAKAYGSDDFSDLDYIGVKPLPSADG(MSE)TVTKIVASYTSGSSDD
ASGDIVLFSGSKHVEFTDWGGTDWPSAYELQPPYQTMPFDLNKNFEIKVDYSGADIVLIFARWEHGSKPQIWAQISPYYV
VDGTAVFTKEQIAKAYGSDDFSDLDYIGVKPLPSADGMTVTKIVASYTSGSSDD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
29322
EUBACTERIUM CELLULOSOLVENS
562
ESCHERICHIA COLI
PLASMID
PET28A
1
2.11
42
MAD DATA WAS COLLECTED BUT STRUCTURE WAS SOLVED WITH SAD USING JUST THE PEAK DATA.
4.6
0.23 M AMMONIUM SULFATE, 0.1 M SODIUM ACETATE PH 4.6, 26%(M/V) PEG 2K MME GROWN AT 292 K, USED 30% GLYCEROL AS CRYOPROTECTANT
292
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
struct_conn
repository
Initial release
Database references
Data collection
Derived calculations
Experimental preparation
Other
1
0
2013-01-16
1
1
2013-02-27
1
2
2019-05-08
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
_struct_conn.pdbx_leaving_atom_flag
STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A NOVEL CARBOHYDRATE BINDING MODULE OF ENDOGLUCANASE CEL5A FROM EUBACTERIUM CELLULOSOLVENS
PDBE
Y
PDBE
2012-01-11
REL
HOH
water
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2066
2
HOH
HOH
2066
A
HOH
2067
2
HOH
HOH
2067
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2070
2
HOH
HOH
2070
A
HOH
2071
2
HOH
HOH
2071
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2075
2
HOH
HOH
2075
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2077
2
HOH
HOH
2077
A
HOH
2078
2
HOH
HOH
2078
A
HOH
2079
2
HOH
HOH
2079
A
HOH
2080
2
HOH
HOH
2080
A
HOH
2081
2
HOH
HOH
2081
A
HOH
2082
2
HOH
HOH
2082
A
HOH
2083
2
HOH
HOH
2083
A
HOH
2084
2
HOH
HOH
2084
A
HOH
2085
2
HOH
HOH
2085
A
HOH
2086
2
HOH
HOH
2086
A
HOH
2087
2
HOH
HOH
2087
A
HOH
2088
2
HOH
HOH
2088
A
HOH
2089
2
HOH
HOH
2089
A
HOH
2090
2
HOH
HOH
2090
A
HOH
2091
2
HOH
HOH
2091
A
HOH
2092
2
HOH
HOH
2092
A
n
1
37
A
n
2
38
A
GLY
39
n
3
GLY
39
A
ASP
40
n
4
ASP
40
A
ILE
41
n
5
ILE
41
A
VAL
42
n
6
VAL
42
A
LEU
43
n
7
LEU
43
A
PHE
44
n
8
PHE
44
A
SER
45
n
9
SER
45
A
GLY
46
n
10
GLY
46
A
SER
47
n
11
SER
47
A
LYS
48
n
12
LYS
48
A
HIS
49
n
13
HIS
49
A
VAL
50
n
14
VAL
50
A
GLU
51
n
15
GLU
51
A
PHE
52
n
16
PHE
52
A
THR
53
n
17
THR
53
A
ASP
54
n
18
ASP
54
A
TRP
55
n
19
TRP
55
A
GLY
56
n
20
GLY
56
A
GLY
57
n
21
GLY
57
A
THR
58
n
22
THR
58
A
ASP
59
n
23
ASP
59
A
TRP
60
n
24
TRP
60
A
PRO
61
n
25
PRO
61
A
SER
62
n
26
SER
62
A
ALA
63
n
27
ALA
63
A
TYR
64
n
28
TYR
64
A
GLU
65
n
29
GLU
65
A
LEU
66
n
30
LEU
66
A
GLN
67
n
31
GLN
67
A
PRO
68
n
32
PRO
68
A
PRO
69
n
33
PRO
69
A
TYR
70
n
34
TYR
70
A
GLN
71
n
35
GLN
71
A
THR
72
n
36
THR
72
A
MSE
73
n
37
MSE
73
A
PRO
74
n
38
PRO
74
A
PHE
75
n
39
PHE
75
A
ASP
76
n
40
ASP
76
A
LEU
77
n
41
LEU
77
A
ASN
78
n
42
ASN
78
A
LYS
79
n
43
LYS
79
A
ASN
80
n
44
ASN
80
A
PHE
81
n
45
PHE
81
A
GLU
82
n
46
GLU
82
A
ILE
83
n
47
ILE
83
A
LYS
84
n
48
LYS
84
A
VAL
85
n
49
VAL
85
A
ASP
86
n
50
ASP
86
A
TYR
87
n
51
TYR
87
A
SER
88
n
52
SER
88
A
GLY
89
n
53
GLY
89
A
ALA
90
n
54
ALA
90
A
ASP
91
n
55
ASP
91
A
ILE
92
n
56
ILE
92
A
VAL
93
n
57
VAL
93
A
LEU
94
n
58
LEU
94
A
ILE
95
n
59
ILE
95
A
PHE
96
n
60
PHE
96
A
ALA
97
n
61
ALA
97
A
ARG
98
n
62
ARG
98
A
TRP
99
n
63
TRP
99
A
GLU
100
n
64
GLU
100
A
HIS
101
n
65
HIS
101
A
GLY
102
n
66
GLY
102
A
SER
103
n
67
SER
103
A
LYS
104
n
68
LYS
104
A
PRO
105
n
69
PRO
105
A
GLN
106
n
70
GLN
106
A
ILE
107
n
71
ILE
107
A
TRP
108
n
72
TRP
108
A
ALA
109
n
73
ALA
109
A
GLN
110
n
74
GLN
110
A
ILE
111
n
75
ILE
111
A
SER
112
n
76
SER
112
A
PRO
113
n
77
PRO
113
A
TYR
114
n
78
TYR
114
A
TYR
115
n
79
TYR
115
A
VAL
116
n
80
VAL
116
A
VAL
117
n
81
VAL
117
A
ASP
118
n
82
ASP
118
A
GLY
119
n
83
GLY
119
A
THR
120
n
84
THR
120
A
ALA
121
n
85
ALA
121
A
VAL
122
n
86
VAL
122
A
PHE
123
n
87
PHE
123
A
THR
124
n
88
THR
124
A
LYS
125
n
89
LYS
125
A
GLU
126
n
90
GLU
126
A
GLN
127
n
91
GLN
127
A
ILE
128
n
92
ILE
128
A
ALA
129
n
93
ALA
129
A
LYS
130
n
94
LYS
130
A
ALA
131
n
95
ALA
131
A
TYR
132
n
96
TYR
132
A
GLY
133
n
97
GLY
133
A
SER
134
n
98
SER
134
A
ASP
135
n
99
ASP
135
A
ASP
136
n
100
ASP
136
A
PHE
137
n
101
PHE
137
A
SER
138
n
102
SER
138
A
ASP
139
n
103
ASP
139
A
LEU
140
n
104
LEU
140
A
ASP
141
n
105
ASP
141
A
TYR
142
n
106
TYR
142
A
ILE
143
n
107
ILE
143
A
GLY
144
n
108
GLY
144
A
VAL
145
n
109
VAL
145
A
LYS
146
n
110
LYS
146
A
PRO
147
n
111
PRO
147
A
LEU
148
n
112
LEU
148
A
PRO
149
n
113
PRO
149
A
SER
150
n
114
SER
150
A
ALA
151
n
115
ALA
151
A
ASP
152
n
116
ASP
152
A
GLY
153
n
117
GLY
153
A
MSE
154
n
118
MSE
154
A
THR
155
n
119
THR
155
A
VAL
156
n
120
VAL
156
A
THR
157
n
121
THR
157
A
LYS
158
n
122
LYS
158
A
ILE
159
n
123
ILE
159
A
VAL
160
n
124
VAL
160
A
ALA
161
n
125
ALA
161
A
SER
162
n
126
SER
162
A
TYR
163
n
127
TYR
163
A
THR
164
n
128
THR
164
A
SER
165
n
129
SER
165
A
n
130
166
A
n
131
167
A
n
132
168
A
n
133
169
A
n
134
170
A
0.8963
-0.0672
0.1797
0.1130
-0.1860
0.3945
-0.0503
-0.0253
0.0173
-0.0587
0.0562
0.0051
0.1320
-0.0334
-0.0059
0.2719
-0.0028
-0.0229
0.0643
0.0049
0.0153
refined
17.2253
29.6061
-0.0775
X-RAY DIFFRACTION
A
39
A
50
X-RAY DIFFRACTION
1
A
51
A
98
X-RAY DIFFRACTION
1
A
99
A
112
X-RAY DIFFRACTION
1
A
113
A
132
X-RAY DIFFRACTION
1
A
133
A
165
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
73
SELENOMETHIONINE
A
MSE
37
MET
A
MSE
154
SELENOMETHIONINE
A
MSE
118
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
50
A
N
VAL
14
A
O
MSE
154
A
O
MSE
118
A
N
SER
162
A
N
SER
126
A
O
GLU
82
A
O
GLU
46
A
N
VAL
85
A
N
VAL
49
A
O
ALA
121
A
O
ALA
85
A
N
VAL
122
A
N
VAL
86
A
O
TYR
115
A
O
TYR
79
A
N
LEU
66
A
N
LEU
30
A
O
ILE
143
A
O
ILE
107
A
N
LYS
146
A
N
LYS
110
A
O
VAL
93
A
O
VAL
57
A
N
ARG
98
A
N
ARG
62
A
O
ILE
107
A
O
ILE
71
1
A
ALA
37
A
ALA
1
1
Y
1
A
SER
38
A
SER
2
1
Y
1
A
GLY
166
A
GLY
130
1
Y
1
A
SER
167
A
SER
131
1
Y
1
A
SER
168
A
SER
132
1
Y
1
A
ASP
169
A
ASP
133
1
Y
1
A
ASP
170
A
ASP
134
1
Y
1
A
A
O
O
HOH
HOH
2036
2092
2.11
1
A
A
O
O
HOH
HOH
2032
2063
2.14
1
-10.87
1.50
110.50
99.63
A
A
A
N
CA
CB
SER
SER
SER
150
150
150
N
1
A
A
CE2
CD2
TRP
TRP
60
60
0.079
0.012
1.409
1.488
N
1
A
A
CB
OG
SER
SER
150
150
-0.150
0.013
1.418
1.268
N
1
A
PHE
52
-166.06
92.89
1
A
SER
134
178.59
168.93
34.416
1.32
0.66
0.00
1.32
0.00
-1.98
0.962
0.955
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES WITH TLS ADDED. RESIDUES A37-38 AND A166-170 ARE DISORDERED. LYS A104 HAS DUAL CONFORMATION. RESIDUES A56-59 ARE FLEXIBLE. LARGE BLOB NEAR SER A150. LYS A104 HAS DUAL CONFORMATION AND OTHER DISORDERED SIDE CHAINS WERE MODELED STEREOCHEMICALLY
0.22712
0.18826
0.19020
1.75
41.45
691
13203
5.0
98.95
6.267
0.096
RANDOM
1
THROUGHOUT
SAD
0.119
0.117
0.80
0.80
1.20
NONE
MAXIMUM LIKELIHOOD
MASK
1.75
41.45
92
1095
0
0
1003
0.020
0.020
1042
0.001
0.020
965
2.076
1.945
1423
0.915
3.000
2203
7.658
5.000
128
37.980
25.000
46
15.243
15.000
153
16.587
15.000
1
0.143
0.200
151
0.010
0.021
1177
0.001
0.020
236
0.297
0.285
1.795
33
732
20
87.33
1.75
63.87
4AEK
13971
0.07
1
10.40
5.5
99.1
0.32
1.75
1.84
1.70
1
3.5
94.8
refinement
REFMAC
5.6.0117
data reduction
iMOSFLM
data scaling
SCALA
phasing
SAS
AUTORICKSAW
ENDOGLUCANASE CEL5A
Structural and biochemical characterization of a novel Carbohydrate Binding Module of endoglucanase Cel5A from Eubacterium cellulosolvens
1
N
N
2
N
N
A
LYS
125
A
LYS
89
HELX_P
A
GLY
133
A
GLY
97
1
1
9
covale
1.316
both
A
MSE
73
A
N
MSE
37
1_555
A
THR
72
A
C
THR
36
1_555
covale
1.333
both
A
MSE
73
A
C
MSE
37
1_555
A
PRO
74
A
N
PRO
38
1_555
covale
1.331
both
A
MSE
154
A
C
MSE
118
1_555
A
THR
155
A
N
THR
119
1_555
covale
1.326
both
A
MSE
154
A
N
MSE
118
1_555
A
GLY
153
A
C
GLY
117
1_555
HYDROLASE
HYDROLASE, FAMILY 5 GLYCOSIDE HYDROLASE, CELLULOSOME
Q3LHN3_9FIRM
UNP
1
Q3LHN3
37
170
4AEK
37
170
Q3LHN3
A
1
1
134
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
40
A
ASP
4
A
VAL
50
A
VAL
14
A
MSE
154
A
MSE
118
A
TYR
163
A
TYR
127
A
PHE
81
A
PHE
45
A
SER
88
A
SER
52
A
THR
120
A
THR
84
A
THR
124
A
THR
88
A
TYR
115
A
TYR
79
A
VAL
117
A
VAL
81
A
TYR
64
A
TYR
28
A
LEU
66
A
LEU
30
A
TYR
142
A
TYR
106
A
PRO
147
A
PRO
111
A
ILE
92
A
ILE
56
A
ARG
98
A
ARG
62
A
ILE
107
A
ILE
71
A
ILE
111
A
ILE
75
178
P 61 2 2