0.028868
0.000000
0.000000
0.000000
0.013749
0.000000
0.000000
0.000000
0.013661
0.00000
0.00000
0.00000
Garcia-Nafria, J.
Baumgart, M.
Turkenburg, J.P.
Wilkinson, A.J.
Bott, M.
Wilson, K.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
34.640
72.730
73.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
R
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
S
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
N
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
S
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
MG
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
288
15800
10.1074/JBC.M113.462440
23589369
Crystal and Solution Studies Reveal that the Transcriptional Regulator Acnr of Corynebacterium Glutamicum is Regulated by Citrate:Mg2+ Binding to a Non-Canonical Pocket.
2013
DK
Acta Crystallogr.,Sect.F
1744-3091
66
1074
10.1107/S1744309110029015
20823530
The Corynebacterium Glutamicum Aconitase Repressor: Scratching Around for Crystals.
2010
10.2210/pdb4af5/pdb
pdb_00004af5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-02-18
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
1.0332
1.0
ID29
ESRF
1.0332
SYNCHROTRON
ESRF BEAMLINE ID29
21412.209
HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR COMPND 2
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
192.124
CITRIC ACID
1
syn
non-polymer
18.015
water
102
nat
water
ACNR
no
no
GHMSVAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSENG
LVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVLD
GFISRLATGASTEGLSEVLDLVEGTVRKRD
GHMSVAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSENG
LVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVLD
GFISRLATGASTEGLSEVLDLVEGTVRKRD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1718
CORYNEBACTERIUM GLUTAMICUM
562
ESCHERICHIA COLI
1
2.34
42.9
NONE
4
1 M AMMONIUM PHOSPHATE; 100 MM SODIUM CITRATE PH 4
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Structure summary
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-01-23
1
1
2013-05-01
1
2
2013-06-19
1
3
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CORYNEBACTERIUM GLUTAMICUM ACNR AU DERIVATIVE STRUCTURE
STRUCTURE OF THE C. GLUTAMICUM ACNR CRYSTAL FORM II
PDBE
Y
PDBE
2012-01-17
REL
REL
MG
MAGNESIUM ION
CIT
CITRIC ACID
HOH
water
4AC6
PDB ENTRY 4AC6
PDB
experimental model
MG
1187
2
MG
MG
1187
A
CIT
1188
3
CIT
CIT
1188
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
n
1
-1
A
n
2
0
A
n
3
1
A
n
4
2
A
n
5
3
A
n
6
4
A
n
7
5
A
n
8
6
A
n
9
7
A
n
10
8
A
n
11
9
A
n
12
10
A
n
13
11
A
n
14
12
A
ARG
13
n
15
ARG
13
A
GLN
14
n
16
GLN
14
A
GLU
15
n
17
GLU
15
A
ILE
16
n
18
ILE
16
A
LEU
17
n
19
LEU
17
A
GLU
18
n
20
GLU
18
A
GLY
19
n
21
GLY
19
A
ALA
20
n
22
ALA
20
A
ARG
21
n
23
ARG
21
A
ARG
22
n
24
ARG
22
A
CYS
23
n
25
CYS
23
A
PHE
24
n
26
PHE
24
A
ALA
25
n
27
ALA
25
A
GLU
26
n
28
GLU
26
A
HIS
27
n
29
HIS
27
A
GLY
28
n
30
GLY
28
A
TYR
29
n
31
TYR
29
A
GLU
30
n
32
GLU
30
A
GLY
31
n
33
GLY
31
A
ALA
32
n
34
ALA
32
A
THR
33
n
35
THR
33
A
VAL
34
n
36
VAL
34
A
ARG
35
n
37
ARG
35
A
ARG
36
n
38
ARG
36
A
LEU
37
n
39
LEU
37
A
GLU
38
n
40
GLU
38
A
GLU
39
n
41
GLU
39
A
ALA
40
n
42
ALA
40
A
THR
41
n
43
THR
41
A
GLY
42
n
44
GLY
42
A
LYS
43
n
45
LYS
43
A
SER
44
n
46
SER
44
A
ARG
45
n
47
ARG
45
A
GLY
46
n
48
GLY
46
A
ALA
47
n
49
ALA
47
A
ILE
48
n
50
ILE
48
A
PHE
49
n
51
PHE
49
A
HIS
50
n
52
HIS
50
A
HIS
51
n
53
HIS
51
A
PHE
52
n
54
PHE
52
A
GLY
53
n
55
GLY
53
A
ASP
54
n
56
ASP
54
A
LYS
55
n
57
LYS
55
A
GLU
56
n
58
GLU
56
A
ASN
57
n
59
ASN
57
A
LEU
58
n
60
LEU
58
A
PHE
59
n
61
PHE
59
A
LEU
60
n
62
LEU
60
A
ALA
61
n
63
ALA
61
A
LEU
62
n
64
LEU
62
A
ALA
63
n
65
ALA
63
A
ARG
64
n
66
ARG
64
A
GLU
65
n
67
GLU
65
A
ASP
66
n
68
ASP
66
A
ALA
67
n
69
ALA
67
A
ALA
68
n
70
ALA
68
A
ARG
69
n
71
ARG
69
A
MET
70
n
72
MET
70
A
ALA
71
n
73
ALA
71
A
GLU
72
n
74
GLU
72
A
VAL
73
n
75
VAL
73
A
VAL
74
n
76
VAL
74
A
SER
75
n
77
SER
75
A
GLU
76
n
78
GLU
76
A
ASN
77
n
79
ASN
77
A
GLY
78
n
80
GLY
78
A
LEU
79
n
81
LEU
79
A
VAL
80
n
82
VAL
80
A
GLU
81
n
83
GLU
81
A
VAL
82
n
84
VAL
82
A
MET
83
n
85
MET
83
A
ARG
84
n
86
ARG
84
A
GLY
85
n
87
GLY
85
A
MET
86
n
88
MET
86
A
LEU
87
n
89
LEU
87
A
GLU
88
n
90
GLU
88
A
ASP
89
n
91
ASP
89
A
PRO
90
n
92
PRO
90
A
GLU
91
n
93
GLU
91
A
ARG
92
n
94
ARG
92
A
TYR
93
n
95
TYR
93
A
ASP
94
n
96
ASP
94
A
TRP
95
n
97
TRP
95
A
MET
96
n
98
MET
96
A
SER
97
n
99
SER
97
A
VAL
98
n
100
VAL
98
A
ARG
99
n
101
ARG
99
A
LEU
100
n
102
LEU
100
A
GLU
101
n
103
GLU
101
A
ILE
102
n
104
ILE
102
A
SER
103
n
105
SER
103
A
LYS
104
n
106
LYS
104
A
GLN
105
n
107
GLN
105
A
LEU
106
n
108
LEU
106
A
ARG
107
n
109
ARG
107
A
THR
108
n
110
THR
108
A
ASP
109
n
111
ASP
109
A
PRO
110
n
112
PRO
110
A
VAL
111
n
113
VAL
111
A
PHE
112
n
114
PHE
112
A
ARG
113
n
115
ARG
113
A
ALA
114
n
116
ALA
114
A
LYS
115
n
117
LYS
115
A
TRP
116
n
118
TRP
116
A
ILE
117
n
119
ILE
117
A
ASP
118
n
120
ASP
118
A
HIS
119
n
121
HIS
119
A
GLN
120
n
122
GLN
120
A
SER
121
n
123
SER
121
A
VAL
122
n
124
VAL
122
A
LEU
123
n
125
LEU
123
A
ASP
124
n
126
ASP
124
A
GLU
125
n
127
GLU
125
A
ALA
126
n
128
ALA
126
A
VAL
127
n
129
VAL
127
A
ARG
128
n
130
ARG
128
A
VAL
129
n
131
VAL
129
A
ARG
130
n
132
ARG
130
A
LEU
131
n
133
LEU
131
A
SER
132
n
134
SER
132
A
ARG
133
n
135
ARG
133
A
ASN
134
n
136
ASN
134
A
VAL
135
n
137
VAL
135
A
ASP
136
n
138
ASP
136
A
LYS
137
n
139
LYS
137
A
GLY
138
n
140
GLY
138
A
GLN
139
n
141
GLN
139
A
MET
140
n
142
MET
140
A
ARG
141
n
143
ARG
141
A
THR
142
n
144
THR
142
A
ASP
143
n
145
ASP
143
A
VAL
144
n
146
VAL
144
A
PRO
145
n
147
PRO
145
A
ILE
146
n
148
ILE
146
A
GLU
147
n
149
GLU
147
A
VAL
148
n
150
VAL
148
A
LEU
149
n
151
LEU
149
A
HIS
150
n
152
HIS
150
A
THR
151
n
153
THR
151
A
PHE
152
n
154
PHE
152
A
LEU
153
n
155
LEU
153
A
GLU
154
n
156
GLU
154
A
THR
155
n
157
THR
155
A
VAL
156
n
158
VAL
156
A
LEU
157
n
159
LEU
157
A
ASP
158
n
160
ASP
158
A
GLY
159
n
161
GLY
159
A
PHE
160
n
162
PHE
160
A
ILE
161
n
163
ILE
161
A
SER
162
n
164
SER
162
A
ARG
163
n
165
ARG
163
A
LEU
164
n
166
LEU
164
A
ALA
165
n
167
ALA
165
A
THR
166
n
168
THR
166
A
GLY
167
n
169
GLY
167
A
ALA
168
n
170
ALA
168
A
SER
169
n
171
SER
169
A
THR
170
n
172
THR
170
A
GLU
171
n
173
GLU
171
A
GLY
172
n
174
GLY
172
A
LEU
173
n
175
LEU
173
A
SER
174
n
176
SER
174
A
GLU
175
n
177
GLU
175
A
VAL
176
n
178
VAL
176
A
LEU
177
n
179
LEU
177
A
ASP
178
n
180
ASP
178
A
LEU
179
n
181
LEU
179
A
VAL
180
n
182
VAL
180
A
GLU
181
n
183
GLU
181
A
GLY
182
n
184
GLY
182
A
THR
183
n
185
THR
183
A
VAL
184
n
186
VAL
184
A
ARG
185
n
187
ARG
185
A
LYS
186
n
188
LYS
186
A
n
189
187
A
n
190
188
A
author_and_software_defined_assembly
PISA
2
dimeric
4190
-39.3
16480
A
GLU
181
A
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
GLU
181
B
A
OE2
GLU
183
1_555
26.9
A
GLU
181
A
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O5
CIT
1_555
161.8
A
GLU
181
B
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O5
CIT
1_555
166.9
A
GLU
181
A
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O7
CIT
1_555
88.2
A
GLU
181
B
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O7
CIT
1_555
107.0
A
CIT
1188
C
O5
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O7
CIT
1_555
74.6
A
GLU
181
A
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O1
CIT
1_555
97.9
A
GLU
181
B
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O1
CIT
1_555
82.0
A
CIT
1188
C
O5
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O1
CIT
1_555
85.5
A
CIT
1188
C
O7
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O1
CIT
1_555
81.3
A
GLU
181
A
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2040
D
O
HOH
1_555
78.4
A
GLU
181
B
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2040
D
O
HOH
1_555
97.7
A
CIT
1188
C
O5
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2040
D
O
HOH
1_555
95.3
A
CIT
1188
C
O7
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2040
D
O
HOH
1_555
89.8
A
CIT
1188
C
O1
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2040
D
O
HOH
1_555
170.4
A
GLU
181
A
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2042
D
O
HOH
1_555
107.6
A
GLU
181
B
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2042
D
O
HOH
1_555
86.0
A
CIT
1188
C
O5
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2042
D
O
HOH
1_555
90.2
A
CIT
1188
C
O7
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2042
D
O
HOH
1_555
162.8
A
CIT
1188
C
O1
CIT
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2042
D
O
HOH
1_555
89.7
A
HOH
2040
D
O
HOH
1_555
A
MG
1187
B
MG
MG
1_555
A
HOH
2042
D
O
HOH
1_555
99.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_455
-x-1,-y,z
crystal symmetry operation
-34.6400000000
0.0000000000
0.0000000000
1
A
CG
GLU
30
A
CG
GLU
32
1
Y
1
A
CD
GLU
30
A
CD
GLU
32
1
Y
1
A
OE1
GLU
30
A
OE1
GLU
32
1
Y
1
A
OE2
GLU
30
A
OE2
GLU
32
1
Y
1
A
GLY
-1
A
GLY
1
1
Y
1
A
HIS
0
A
HIS
2
1
Y
1
A
MET
1
A
MET
3
1
Y
1
A
SER
2
A
SER
4
1
Y
1
A
VAL
3
A
VAL
5
1
Y
1
A
ALA
4
A
ALA
6
1
Y
1
A
ALA
5
A
ALA
7
1
Y
1
A
GLY
6
A
GLY
8
1
Y
1
A
ASP
7
A
ASP
9
1
Y
1
A
LYS
8
A
LYS
10
1
Y
1
A
PRO
9
A
PRO
11
1
Y
1
A
THR
10
A
THR
12
1
Y
1
A
ASN
11
A
ASN
13
1
Y
1
A
SER
12
A
SER
14
1
Y
1
A
ARG
187
A
ARG
189
1
Y
1
A
ASP
188
A
ASP
190
1
Y
24.792
0.30
0.00
0.00
-0.06
0.00
-0.25
0.940
0.910
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.
0.24632
0.19399
0.19646
1.90
73.20
756
14286
5.0
98.94
3.081
0.093
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.162
0.156
0.80
0.80
1.20
PDB ENTRY 4AC6
MAXIMUM LIKELIHOOD
MASK
1.90
73.20
102
1499
14
0
1383
0.019
0.019
1436
0.001
0.020
1015
1.956
1.967
1936
1.039
3.000
2436
5.532
5.000
179
34.132
22.432
74
14.785
15.000
262
16.922
15.000
20
0.297
0.200
215
0.008
0.020
1614
0.001
0.020
318
0.264
0.223
1.949
64
911
20
99.59
1.90
31.31
4AF5
15067
1.0
0.13
1
10.00
6
99.3
0.66
1.90
2.00
3.60
1
6.2
99.9
refinement
REFMAC
5.6.0119
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
Structure of the C. glutamicum AcnR Crystal Form I
1
N
N
2
N
N
3
N
N
4
N
N
A
ARG
13
A
ARG
15
HELX_P
A
GLY
28
A
GLY
30
1
1
16
A
THR
33
A
THR
35
HELX_P
A
GLY
42
A
GLY
44
1
2
10
A
SER
44
A
SER
46
HELX_P
A
GLY
53
A
GLY
55
1
3
10
A
ASP
54
A
ASP
56
HELX_P
A
GLY
78
A
GLY
80
1
4
25
A
GLY
78
A
GLY
80
HELX_P
A
ASP
89
A
ASP
91
1
5
12
A
ARG
92
A
ARG
94
HELX_P
A
ILE
102
A
ILE
104
1
6
11
A
ILE
102
A
ILE
104
HELX_P
A
ASP
109
A
ASP
111
1
7
8
A
ASP
109
A
ASP
111
HELX_P
A
GLN
120
A
GLN
122
1
8
12
A
GLN
120
A
GLN
122
HELX_P
A
LYS
137
A
LYS
139
1
9
18
A
PRO
145
A
PRO
147
HELX_P
A
THR
166
A
THR
168
1
10
22
A
GLY
172
A
GLY
174
HELX_P
A
ARG
185
A
ARG
187
1
11
14
metalc
2.223
A
A
GLU
181
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
metalc
2.042
B
A
GLU
181
A
OE2
GLU
183
1_555
A
MG
1187
B
MG
MG
1_555
metalc
2.058
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O5
CIT
1_555
metalc
2.081
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O7
CIT
1_555
metalc
2.037
A
MG
1187
B
MG
MG
1_555
A
CIT
1188
C
O1
CIT
1_555
metalc
1.882
A
MG
1187
B
MG
MG
1_555
A
HOH
2040
D
O
HOH
1_555
metalc
2.065
A
MG
1187
B
MG
MG
1_555
A
HOH
2042
D
O
HOH
1_555
TRANSCRIPTION
TRANSCRIPTION, ACONITASE, TETR REPRESSOR
ACNR_CORGL
UNP
1
Q8NQ97
1
188
4AF5
1
188
Q8NQ97
A
1
3
190
1
expression tag
GLY
-1
4AF5
A
Q8NQ97
UNP
1
1
expression tag
HIS
0
4AF5
A
Q8NQ97
UNP
2
BINDING SITE FOR RESIDUE MG A 1187
A
MG
1187
Software
5
BINDING SITE FOR RESIDUE CIT A 1188
A
CIT
1188
Software
13
A
ASN
77
A
ASN
79
5
1_555
A
GLU
181
A
GLU
183
5
1_555
A
CIT
1188
C
CIT
5
1_555
A
HOH
2040
D
HOH
5
1_555
A
HOH
2042
D
HOH
5
1_555
A
ASN
77
A
ASN
79
13
1_555
A
GLY
78
A
GLY
80
13
1_555
A
LEU
79
A
LEU
81
13
1_555
A
VAL
80
A
VAL
82
13
1_555
A
ARG
130
A
ARG
132
13
1_555
A
ASN
134
A
ASN
136
13
1_555
A
LEU
153
A
LEU
155
13
1_555
A
GLU
181
A
GLU
183
13
1_555
A
ARG
185
A
ARG
187
13
1_555
A
MG
1187
B
MG
13
1_555
A
HOH
2040
D
HOH
13
1_555
A
HOH
2042
D
HOH
13
1_555
A
HOH
2043
D
HOH
13
1_555
18
P 21 21 2