0.012553
0.000000
0.002746
0.000000
0.028359
0.000000
0.000000
0.000000
0.020647
0.00000
0.00000
0.00000
Aggarwal, M.
Kumar, P.
Tomar, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
102.34
90.00
79.661
35.262
49.578
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
US
Plos One
1932-6203
7
51288
10.1371/JOURNAL.PONE.0051288
23251484
Crystal Structure of Aura Virus Capsid Protease and its Complex with Dioxane: New Insights Into Capsid-Glycoprotein Molecular Contacts
2012
DK
Acta Crystallogr.,Sect.F
1744-3091
67
1394
10.1107/S174430911103404X
22102240
Crystallization, High-Resolution Data Collection and Preliminary Crystallographic Analysis of Aura Virus Capsid Protease and its Complex with Dioxane.
2011
10.2210/pdb4agk/pdb
pdb_00004agk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2010-11-25
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
BRUKER AXS MICROSTAR-H
17008.246
CAPSID PROTEIN
3.4.21.90
RESIDUES 110-267
1
man
polymer
18.015
water
127
nat
water
COAT PROTEIN, C
no
no
ALKFEADRTFAVKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPE
GFYNWHHGAVQFSGGRFTIPTGAGGPGDSGRPILDNSGKVVAIVLGGANEGARTALSVVTWNKKGAAIKTTHEDTVEW
ALKFEADRTFAVKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPE
GFYNWHHGAVQFSGGRFTIPTGAGGPGDSGRPILDNSGKVVAIVLGGANEGARTALSVVTWNKKGAAIKTTHEDTVEW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
44158
AURA VIRUS
469008
ESCHERICHIA COLI
BL21(DE3)
ROSETTA
PET28C
PLASMID
1
2
38.56
NONE
0.1 M BIS-TRIS AND POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000.
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Other
Refinement description
1
0
2012-12-26
1
1
2013-01-30
1
2
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
CRYSTAL STRUCTURE OF THE CAPSID PROTEIN (110-267) FROM AURA VIRUS IN COMPLEX WITH DIOXANE
PDBE
Y
PDBE
2012-01-30
REL
REL
HOH
water
SOME RESIDUES ARE FOUND TO BE DIFFERENT IN OUR DATA
1KXA
PDB ENTRY 1KXA
PDB
experimental model
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2066
2
HOH
HOH
2066
A
HOH
2067
2
HOH
HOH
2067
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2070
2
HOH
HOH
2070
A
HOH
2071
2
HOH
HOH
2071
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2075
2
HOH
HOH
2075
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2077
2
HOH
HOH
2077
A
HOH
2078
2
HOH
HOH
2078
A
HOH
2079
2
HOH
HOH
2079
A
HOH
2080
2
HOH
HOH
2080
A
HOH
2081
2
HOH
HOH
2081
A
HOH
2082
2
HOH
HOH
2082
A
HOH
2083
2
HOH
HOH
2083
A
HOH
2084
2
HOH
HOH
2084
A
HOH
2085
2
HOH
HOH
2085
A
HOH
2086
2
HOH
HOH
2086
A
HOH
2087
2
HOH
HOH
2087
A
HOH
2088
2
HOH
HOH
2088
A
HOH
2089
2
HOH
HOH
2089
A
HOH
2090
2
HOH
HOH
2090
A
HOH
2091
2
HOH
HOH
2091
A
HOH
2092
2
HOH
HOH
2092
A
HOH
2093
2
HOH
HOH
2093
A
HOH
2094
2
HOH
HOH
2094
A
HOH
2095
2
HOH
HOH
2095
A
HOH
2096
2
HOH
HOH
2096
A
HOH
2097
2
HOH
HOH
2097
A
HOH
2098
2
HOH
HOH
2098
A
HOH
2099
2
HOH
HOH
2099
A
HOH
2100
2
HOH
HOH
2100
A
HOH
2101
2
HOH
HOH
2101
A
HOH
2102
2
HOH
HOH
2102
A
HOH
2103
2
HOH
HOH
2103
A
HOH
2104
2
HOH
HOH
2104
A
HOH
2105
2
HOH
HOH
2105
A
HOH
2106
2
HOH
HOH
2106
A
HOH
2107
2
HOH
HOH
2107
A
HOH
2108
2
HOH
HOH
2108
A
HOH
2109
2
HOH
HOH
2109
A
HOH
2110
2
HOH
HOH
2110
A
HOH
2111
2
HOH
HOH
2111
A
HOH
2112
2
HOH
HOH
2112
A
HOH
2113
2
HOH
HOH
2113
A
HOH
2114
2
HOH
HOH
2114
A
HOH
2115
2
HOH
HOH
2115
A
HOH
2116
2
HOH
HOH
2116
A
HOH
2117
2
HOH
HOH
2117
A
HOH
2118
2
HOH
HOH
2118
A
HOH
2119
2
HOH
HOH
2119
A
HOH
2120
2
HOH
HOH
2120
A
HOH
2121
2
HOH
HOH
2121
A
HOH
2122
2
HOH
HOH
2122
A
HOH
2123
2
HOH
HOH
2123
A
HOH
2124
2
HOH
HOH
2124
A
HOH
2125
2
HOH
HOH
2125
A
HOH
2126
2
HOH
HOH
2126
A
HOH
2127
2
HOH
HOH
2127
A
n
1
110
A
n
2
111
A
n
3
112
A
n
4
113
A
n
5
114
A
n
6
115
A
ASP
116
n
7
ASP
116
A
ARG
117
n
8
ARG
117
A
THR
118
n
9
THR
118
A
PHE
119
n
10
PHE
119
A
ALA
120
n
11
ALA
120
A
VAL
121
n
12
VAL
121
A
LYS
122
n
13
LYS
122
A
ASN
123
n
14
ASN
123
A
GLU
124
n
15
GLU
124
A
ASP
125
n
16
ASP
125
A
GLY
126
n
17
GLY
126
A
LYS
127
n
18
LYS
127
A
ILE
128
n
19
ILE
128
A
MET
129
n
20
MET
129
A
GLY
130
n
21
GLY
130
A
TYR
131
n
22
TYR
131
A
ALA
132
n
23
ALA
132
A
VAL
133
n
24
VAL
133
A
ALA
134
n
25
ALA
134
A
MET
135
n
26
MET
135
A
GLU
136
n
27
GLU
136
A
GLY
137
n
28
GLY
137
A
LYS
138
n
29
LYS
138
A
VAL
139
n
30
VAL
139
A
ILE
140
n
31
ILE
140
A
LYS
141
n
32
LYS
141
A
PRO
142
n
33
PRO
142
A
LEU
143
n
34
LEU
143
A
HIS
144
n
35
HIS
144
A
VAL
145
n
36
VAL
145
A
LYS
146
n
37
LYS
146
A
GLY
147
n
38
GLY
147
A
THR
148
n
39
THR
148
A
ILE
149
n
40
ILE
149
A
ASP
150
n
41
ASP
150
A
HIS
151
n
42
HIS
151
A
PRO
152
n
43
PRO
152
A
ALA
153
n
44
ALA
153
A
LEU
154
n
45
LEU
154
A
ALA
155
n
46
ALA
155
A
LYS
156
n
47
LYS
156
A
LEU
157
n
48
LEU
157
A
LYS
158
n
49
LYS
158
A
PHE
159
n
50
PHE
159
A
THR
160
n
51
THR
160
A
LYS
161
n
52
LYS
161
A
SER
162
n
53
SER
162
A
SER
163
n
54
SER
163
A
SER
164
n
55
SER
164
A
TYR
165
n
56
TYR
165
A
ASP
166
n
57
ASP
166
A
MET
167
n
58
MET
167
A
GLU
168
n
59
GLU
168
A
PHE
169
n
60
PHE
169
A
ALA
170
n
61
ALA
170
A
LYS
171
n
62
LYS
171
A
LEU
172
n
63
LEU
172
A
PRO
173
n
64
PRO
173
A
THR
174
n
65
THR
174
A
GLU
175
n
66
GLU
175
A
MET
176
n
67
MET
176
A
LYS
177
n
68
LYS
177
A
SER
178
n
69
SER
178
A
ASP
179
n
70
ASP
179
A
ALA
180
n
71
ALA
180
A
PHE
181
n
72
PHE
181
A
GLY
182
n
73
GLY
182
A
TYR
183
n
74
TYR
183
A
THR
184
n
75
THR
184
A
THR
185
n
76
THR
185
A
GLU
186
n
77
GLU
186
A
HIS
187
n
78
HIS
187
A
PRO
188
n
79
PRO
188
A
GLU
189
n
80
GLU
189
A
GLY
190
n
81
GLY
190
A
PHE
191
n
82
PHE
191
A
TYR
192
n
83
TYR
192
A
ASN
193
n
84
ASN
193
A
TRP
194
n
85
TRP
194
A
HIS
195
n
86
HIS
195
A
HIS
196
n
87
HIS
196
A
GLY
197
n
88
GLY
197
A
ALA
198
n
89
ALA
198
A
VAL
199
n
90
VAL
199
A
GLN
200
n
91
GLN
200
A
PHE
201
n
92
PHE
201
A
SER
202
n
93
SER
202
A
GLY
203
n
94
GLY
203
A
GLY
204
n
95
GLY
204
A
ARG
205
n
96
ARG
205
A
PHE
206
n
97
PHE
206
A
THR
207
n
98
THR
207
A
ILE
208
n
99
ILE
208
A
PRO
209
n
100
PRO
209
A
THR
210
n
101
THR
210
A
GLY
211
n
102
GLY
211
A
ALA
212
n
103
ALA
212
A
GLY
213
n
104
GLY
213
A
GLY
214
n
105
GLY
214
A
PRO
215
n
106
PRO
215
A
GLY
216
n
107
GLY
216
A
ASP
217
n
108
ASP
217
A
SER
218
n
109
SER
218
A
GLY
219
n
110
GLY
219
A
ARG
220
n
111
ARG
220
A
PRO
221
n
112
PRO
221
A
ILE
222
n
113
ILE
222
A
LEU
223
n
114
LEU
223
A
ASP
224
n
115
ASP
224
A
ASN
225
n
116
ASN
225
A
SER
226
n
117
SER
226
A
GLY
227
n
118
GLY
227
A
LYS
228
n
119
LYS
228
A
VAL
229
n
120
VAL
229
A
VAL
230
n
121
VAL
230
A
ALA
231
n
122
ALA
231
A
ILE
232
n
123
ILE
232
A
VAL
233
n
124
VAL
233
A
LEU
234
n
125
LEU
234
A
GLY
235
n
126
GLY
235
A
GLY
236
n
127
GLY
236
A
ALA
237
n
128
ALA
237
A
ASN
238
n
129
ASN
238
A
GLU
239
n
130
GLU
239
A
GLY
240
n
131
GLY
240
A
ALA
241
n
132
ALA
241
A
ARG
242
n
133
ARG
242
A
THR
243
n
134
THR
243
A
ALA
244
n
135
ALA
244
A
LEU
245
n
136
LEU
245
A
SER
246
n
137
SER
246
A
VAL
247
n
138
VAL
247
A
VAL
248
n
139
VAL
248
A
THR
249
n
140
THR
249
A
TRP
250
n
141
TRP
250
A
ASN
251
n
142
ASN
251
A
LYS
252
n
143
LYS
252
A
LYS
253
n
144
LYS
253
A
GLY
254
n
145
GLY
254
A
ALA
255
n
146
ALA
255
A
ALA
256
n
147
ALA
256
A
ILE
257
n
148
ILE
257
A
LYS
258
n
149
LYS
258
A
THR
259
n
150
THR
259
A
THR
260
n
151
THR
260
A
HIS
261
n
152
HIS
261
A
GLU
262
n
153
GLU
262
A
ASP
263
n
154
ASP
263
A
THR
264
n
155
THR
264
A
VAL
265
n
156
VAL
265
A
GLU
266
n
157
GLU
266
A
TRP
267
n
158
TRP
267
A
2.2459
-0.9286
1.5030
2.8091
0.9394
2.5776
-0.0405
-0.1852
0.0677
-0.0990
-0.0487
0.2102
-0.1065
-0.4250
0.0893
0.0557
0.0262
0.0003
0.1245
0.0166
0.0591
refined
-20.3368
0.7825
-15.8436
X-RAY DIFFRACTION
3.0276
-1.3139
1.1347
0.9845
0.3789
3.5991
-0.1903
-0.0019
0.3024
0.0118
-0.0629
0.0755
-0.0457
-0.5729
0.2532
0.1159
-0.0258
-0.0650
0.1614
0.0671
0.2162
refined
-23.2655
4.2588
-19.0373
X-RAY DIFFRACTION
2.4409
0.3567
1.7927
1.2343
-0.1092
2.3647
-0.2127
-0.2309
0.3604
0.0564
-0.0506
0.1063
-0.2995
-0.2653
0.2632
0.0813
0.0442
-0.0057
0.0619
-0.0354
0.0707
refined
-12.0793
6.0722
-9.3014
X-RAY DIFFRACTION
5.5801
1.7186
0.8435
1.6631
0.8597
4.3931
0.0889
-0.0739
-0.2030
0.0807
-0.0112
-0.1916
0.0165
0.4072
-0.0777
0.0198
0.0051
0.0000
0.0486
0.0086
0.0279
refined
0.0598
-4.4087
-8.2114
X-RAY DIFFRACTION
2.1004
0.3537
-0.4845
2.0143
1.4154
1.2755
-0.0272
-0.2221
-0.0270
-0.0434
-0.0029
0.0663
0.0502
0.1095
0.0301
0.3555
0.0979
-0.0758
0.0521
-0.0141
0.0233
refined
-1.9097
-8.9804
-8.6538
X-RAY DIFFRACTION
1.6598
0.0915
0.7479
1.1756
0.1594
2.2653
0.0012
0.0135
-0.0333
-0.0518
0.0301
-0.0535
0.0294
-0.0063
-0.0314
0.0164
0.0051
0.0129
0.0124
0.0032
0.0117
refined
-6.4296
-3.1220
-13.6294
X-RAY DIFFRACTION
A
136
A
150
X-RAY DIFFRACTION
1
A
151
A
165
X-RAY DIFFRACTION
2
A
166
A
195
X-RAY DIFFRACTION
3
A
196
A
205
X-RAY DIFFRACTION
4
A
206
A
210
X-RAY DIFFRACTION
5
A
211
A
267
X-RAY DIFFRACTION
6
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ALA
110
A
ALA
1
1
Y
1
A
LEU
111
A
LEU
2
1
Y
1
A
LYS
112
A
LYS
3
1
Y
1
A
PHE
113
A
PHE
4
1
Y
1
A
GLU
114
A
GLU
5
1
Y
1
A
ALA
115
A
ALA
6
1
Y
30.590
-0.98
0.00
-0.79
1.34
0.00
-0.69
0.967
0.934
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.23151
0.17645
0.17898
1.81
48.45
548
10862
4.8
90.69
5.379
0.094
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.159
0.151
0.80
0.80
1.20
PDB ENTRY 1KXA
MAXIMUM LIKELIHOOD
MASK
1.81
48.45
127
1279
0
0
1152
0.012
0.020
1194
1.567
1.939
1617
6.973
5.000
155
31.686
23.750
48
15.967
15.000
197
17.380
15.000
5
0.105
0.200
173
0.008
0.021
908
0.299
0.344
1.852
24
477
20
54.87
1.80
50.00
4AGK
11410
2.0
0.06
1
22.60
3.9
90.2
0.27
1.80
1.83
2.95
1
2.10
42.8
refinement
REFMAC
5.6.0117
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
MOLREP
Crystal structure of capsid protein (110-267) from Aura virus
1
N
N
2
N
N
A
PRO
173
A
PRO
64
HELX_P
A
LYS
177
A
LYS
68
5
1
5
HYDROLASE
HYDROLASE, VIRAL PROTEIN
POLS_AURAV
UNP
1
Q86925
110
267
4AGK
110
267
Q86925
A
1
1
158
1
VAL
SEE REMARK 999
ALA
120
4AGK
A
Q86925
UNP
120
11
1
GLY
SEE REMARK 999
VAL
121
4AGK
A
Q86925
UNP
121
12
1
VAL
SEE REMARK 999
GLY
190
4AGK
A
Q86925
UNP
190
81
1
VAL
SEE REMARK 999
ALA
212
4AGK
A
Q86925
UNP
212
103
1
VAL
SEE REMARK 999
GLY
240
4AGK
A
Q86925
UNP
240
131
1
PRO
SEE REMARK 999
ALA
241
4AGK
A
Q86925
UNP
241
132
1
GLY
SEE REMARK 999
ARG
242
4AGK
A
Q86925
UNP
242
133
1
1
1
1
1
1
1
1
1
1
1
1
1
1
A
THR
118
A
THR
9
A
LYS
122
A
LYS
13
A
ILE
128
A
ILE
19
A
MET
135
A
MET
26
A
LYS
138
A
LYS
29
A
PRO
142
A
PRO
33
A
THR
148
A
THR
39
A
ILE
149
A
ILE
40
A
THR
160
A
THR
51
A
SER
162
A
SER
53
A
MET
167
A
MET
58
A
LYS
171
A
LYS
62
A
GLY
190
A
GLY
81
A
TRP
194
A
TRP
85
A
GLY
197
A
GLY
88
A
SER
202
A
SER
93
A
ARG
205
A
ARG
96
A
PRO
209
A
PRO
100
A
PRO
221
A
PRO
112
A
LEU
223
A
LEU
114
A
VAL
229
A
VAL
120
A
ASN
238
A
ASN
129
A
ARG
242
A
ARG
133
A
TRP
250
A
TRP
141
A
ALA
256
A
ALA
147
A
THR
259
A
THR
150
A
VAL
265
A
VAL
156
A
GLU
266
A
GLU
157
5
C 1 2 1