0.041622 0.000000 0.000000 0.000000 0.025060 0.000000 0.000000 0.000000 0.015201 0.00000 0.00000 0.00000 Munnur, D.G. Mitchell, E.P. Forsyth, V.T. Teixeira, S.C.M. Neidle, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 24.026 39.905 65.784 C21 H18 N6 O 370.407 2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N N Y 15 N C Y 16 N C Y 17 N N Y 18 N C Y 19 N C Y 20 N C Y 21 N C N 22 N C N 23 N N N 24 N N N 25 N C N 26 N N N 27 N N N 28 N O N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N O N 48 N P N 49 N O N 50 N O N 51 N O N 52 N C N 53 R C N 54 N O N 55 S C N 56 N O N 57 N C N 58 R C Y 59 N N Y 60 N C Y 61 N N Y 62 N C Y 63 N C N 64 N N Y 65 N N Y 66 N C Y 67 N N Y 68 N C N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N O N 84 N P N 85 N O N 86 N O N 87 N O N 88 N C N 89 R C N 90 N O N 91 S C N 92 N O N 93 N C N 94 R C N 95 N N N 96 N C N 97 N O N 98 N N N 99 N C N 100 N N N 101 N C N 102 N C N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N O N 118 N P N 119 N O N 120 N O N 121 N O N 122 N C N 123 R C N 124 N O N 125 S C N 126 N O N 127 N C N 128 R C Y 129 N N Y 130 N C Y 131 N N Y 132 N C N 133 N C N 134 N O N 135 N N N 136 N C N 137 N N N 138 N N Y 139 N C N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N O N 155 N P N 156 N O N 157 N O N 158 N O N 159 N C N 160 R C N 161 N O N 162 S C N 163 N O N 164 N C N 165 R C N 166 N N N 167 N C N 168 N O N 169 N N N 170 N C N 171 N O N 172 N C N 173 N C N 174 N C N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N O N 191 N H N 192 N H N 193 N MG Y 1 N sing Y 2 N doub Y 3 N doub N 4 N sing Y 5 N sing N 6 N sing Y 7 N doub Y 8 N sing N 9 N sing Y 10 N sing Y 11 N doub Y 12 N doub Y 13 N sing Y 14 N doub N 15 N sing Y 16 N sing Y 17 N sing Y 18 N doub Y 19 N sing Y 20 N sing Y 21 N doub Y 22 N sing Y 23 N doub Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N doub N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing Y 73 N sing Y 74 N sing Y 75 N doub N 76 N sing Y 77 N sing Y 78 N sing Y 79 N doub N 80 N sing Y 81 N doub N 82 N sing N 83 N sing Y 84 N sing Y 85 N doub N 86 N sing Y 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing Y 152 N doub N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing To be Published 0353 A Detailed Study of Water Network in the Minor Groove of D(Cgcgaattcgcg)2 and D(Cgcaaatttgcg)2 in Presence of Linear Groove Binders 10.2210/pdb4agz/pdb pdb_00004agz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 TOROIDAL MIRROR CCD 2009-07-19 ADSC CCD SI (111) SINGLE WAVELENGTH M x-ray 1 0.9765 1.0 ID14-4 ESRF 0.9765 SYNCHROTRON ESRF BEAMLINE ID14-4 3663.392 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*GP)-3' 2 syn polymer 24.305 MAGNESIUM ION 3 syn non-polymer 370.407 2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE 1 syn non-polymer 18.015 water 192 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 1 2.16 61.58 NONE VAPOR DIFFUSION, SITTING DROP 6.5 MAGNESIUM CHLORIDE, DNA, DB 985, MPD, SODIUM CACODYLATE BUFFER. PH 6.6, VAPOUR DIFFUSION, SITTING DROP, 285K 285 2.563 1 19 A 1 B 24 0.426 A_DC1:DG24_B 1 -18.455 0.190 -0.003 -0.143 3.699 1 19 A 2 B 23 -1.907 A_DG2:DC23_B 2 -5.966 -0.152 0.235 -0.147 -2.213 1 19 A 3 B 22 0.253 A_DC3:DG22_B 3 -8.147 0.241 0.124 -0.147 10.252 1 19 A 4 B 21 -1.295 A_DG4:DC21_B 4 -10.904 -0.208 -0.051 -0.140 6.172 1 20 A 5 B 20 1.220 A_DA5:DT20_B 5 -17.261 0.091 -0.145 -0.087 1.678 1 20 A 6 B 19 7.640 A_DA6:DT19_B 6 -19.035 0.080 -0.046 -0.103 -1.875 1 20 A 7 B 18 6.423 A_DT7:DA18_B 7 -19.039 -0.099 -0.001 -0.097 -4.003 1 20 A 8 B 17 1.723 A_DT8:DA17_B 8 -14.529 -0.109 -0.099 -0.163 -7.922 1 19 A 9 B 16 -0.405 A_DC9:DG16_B 9 -10.680 0.221 -0.108 -0.193 9.726 1 19 A 10 B 15 1.248 A_DG10:DC15_B 10 -2.335 -0.176 0.128 -0.141 9.924 1 19 A 11 B 14 -2.192 A_DC11:DG14_B 11 -26.245 0.177 0.267 -0.185 9.324 1 19 A 12 B 13 -2.375 A_DG12:DC13_B 12 19.224 -0.343 -0.205 -0.130 3.279 34.289 A A 1 2 12.624 B B 24 23 3.287 7.379 -0.434 0.192 AA_DC1DG2:DC23DG24_BB 1 -2.856 4.887 33.390 -0.854 0.279 3.433 42.383 A A 2 3 -5.327 B B 23 22 3.471 -3.845 0.738 0.655 AA_DG2DC3:DG22DC23_BB 2 2.121 -2.938 42.165 1.320 -0.792 3.161 28.904 A A 3 4 21.150 B B 22 21 3.144 10.312 -0.429 0.801 AA_DC3DG4:DC21DG22_BB 3 3.110 -6.378 26.862 -0.686 1.550 3.366 38.814 A A 4 5 6.145 B B 21 20 3.371 4.077 0.011 0.128 AA_DG4DA5:DT20DC21_BB 4 0.333 -0.502 38.607 -0.320 0.025 3.257 35.063 A A 5 6 6.242 B B 20 19 3.304 3.754 0.470 -0.221 AA_DA5DA6:DT19DT20_BB 5 -0.485 0.807 34.864 -0.934 -0.854 3.275 31.053 A A 6 7 1.228 B B 19 18 3.288 0.657 -0.019 -0.583 AA_DA6DT7:DA18DT19_BB 6 -0.258 0.482 31.045 -1.216 -0.014 3.242 35.382 A A 7 8 1.812 B B 18 17 3.270 1.101 -0.429 -0.254 AA_DT7DT8:DA17DA18_BB 7 1.401 -2.306 35.339 -0.580 0.912 3.390 41.121 A A 8 9 -0.630 B B 17 16 3.392 -0.443 0.115 0.322 AA_DT8DC9:DG16DA17_BB 8 1.655 -2.357 41.087 0.508 0.022 3.240 27.241 A A 9 10 15.857 B B 16 15 3.074 7.365 0.367 1.247 AA_DC9DG10:DC15DG16_BB 9 -2.855 6.148 26.092 0.830 -1.485 3.064 46.703 A A 10 11 -17.096 B B 15 14 3.422 -13.378 -1.038 1.012 AA_DG10DC11:DG14DC15_BB 10 -2.362 3.018 44.790 2.410 1.110 3.366 36.201 A A 11 12 -17.082 B B 14 13 3.576 -10.452 1.515 0.738 AA_DC11DG12:DC13DG14_BB 11 3.938 -6.435 34.490 2.788 -1.835 exptl_crystal_grow exptl_crystal_grow pdbx_seq_map_depositor_info struct_biol chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Data collection Experimental preparation Data collection Experimental preparation Data collection Database references Derived calculations Other Refinement description 1 0 2013-01-16 1 1 2019-01-30 1 2 2019-05-08 1 3 2023-12-20 _exptl_crystal_grow.method _exptl_crystal_grow.temp _pdbx_seq_map_depositor_info.one_letter_code_mod _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF THE DB 921-D(CGCAAATTTGCG)2 COMPLEX AT 1.42 A RESOLUTION CRYSTAL STRUCTURE OF THE DB 985-D(CGCAAATTTGCG)2 COMPLEX AT 1.20 A RESOLUTION PDBE Y PDBE 2012-02-02 REL REL 1 A O HOH 2011 A 6.40 1 B O HOH 2010 5.99 MG MAGNESIUM ION D98 2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE HOH water 32630 SYNTHETIC CONSTRUCT sample 1FQ2 PDB ENTRY 1FQ2 PDB experimental model MG 1013 2 MG MG 1013 A MG 1014 2 MG MG 1014 A D98 1025 3 D98 D98 1025 B MG 1026 2 MG MG 1026 B HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B HOH 2013 4 HOH HOH 2013 B HOH 2014 4 HOH HOH 2014 B HOH 2016 4 HOH HOH 2016 B HOH 2017 4 HOH HOH 2017 B HOH 2018 4 HOH HOH 2018 B HOH 2019 4 HOH HOH 2019 B HOH 2020 4 HOH HOH 2020 B HOH 2021 4 HOH HOH 2021 B HOH 2022 4 HOH HOH 2022 B HOH 2023 4 HOH HOH 2023 B HOH 2024 4 HOH HOH 2024 B HOH 2025 4 HOH HOH 2025 B HOH 2026 4 HOH HOH 2026 B HOH 2027 4 HOH HOH 2027 B HOH 2028 4 HOH HOH 2028 B HOH 2029 4 HOH HOH 2029 B HOH 2030 4 HOH HOH 2030 B HOH 2031 4 HOH HOH 2031 B HOH 2032 4 HOH HOH 2032 B HOH 2033 4 HOH HOH 2033 B HOH 2034 4 HOH HOH 2034 B HOH 2036 4 HOH HOH 2036 B HOH 2037 4 HOH HOH 2037 B HOH 2038 4 HOH HOH 2038 B HOH 2039 4 HOH HOH 2039 B HOH 2040 4 HOH HOH 2040 B HOH 2041 4 HOH HOH 2041 B HOH 2042 4 HOH HOH 2042 B HOH 2043 4 HOH HOH 2043 B HOH 2044 4 HOH HOH 2044 B HOH 2045 4 HOH HOH 2045 B HOH 2046 4 HOH HOH 2046 B HOH 2047 4 HOH HOH 2047 B HOH 2048 4 HOH HOH 2048 B HOH 2049 4 HOH HOH 2049 B HOH 2050 4 HOH HOH 2050 B HOH 2051 4 HOH HOH 2051 B HOH 2052 4 HOH HOH 2052 B HOH 2053 4 HOH HOH 2053 B HOH 2054 4 HOH HOH 2054 B HOH 2055 4 HOH HOH 2055 B HOH 2056 4 HOH HOH 2056 B HOH 2057 4 HOH HOH 2057 B HOH 2058 4 HOH HOH 2058 B HOH 2059 4 HOH HOH 2059 B HOH 2060 4 HOH HOH 2060 B HOH 2061 4 HOH HOH 2061 B HOH 2062 4 HOH HOH 2062 B HOH 2064 4 HOH HOH 2064 B HOH 2065 4 HOH HOH 2065 B HOH 2066 4 HOH HOH 2066 B HOH 2067 4 HOH HOH 2067 B HOH 2068 4 HOH HOH 2068 B HOH 2069 4 HOH HOH 2069 B HOH 2071 4 HOH HOH 2071 B HOH 2072 4 HOH HOH 2072 B HOH 2073 4 HOH HOH 2073 B HOH 2074 4 HOH HOH 2074 B HOH 2075 4 HOH HOH 2075 B HOH 2076 4 HOH HOH 2076 B HOH 2077 4 HOH HOH 2077 B HOH 2078 4 HOH HOH 2078 B HOH 2079 4 HOH HOH 2079 B HOH 2080 4 HOH HOH 2080 B HOH 2081 4 HOH HOH 2081 B HOH 2082 4 HOH HOH 2082 B HOH 2083 4 HOH HOH 2083 B HOH 2084 4 HOH HOH 2084 B HOH 2085 4 HOH HOH 2085 B HOH 2086 4 HOH HOH 2086 B HOH 2087 4 HOH HOH 2087 B HOH 2088 4 HOH HOH 2088 B HOH 2089 4 HOH HOH 2089 B HOH 2090 4 HOH HOH 2090 B HOH 2091 4 HOH HOH 2091 B HOH 2092 4 HOH HOH 2092 B HOH 2093 4 HOH HOH 2093 B HOH 2094 4 HOH HOH 2094 B HOH 2095 4 HOH HOH 2095 B HOH 2096 4 HOH HOH 2096 B HOH 2097 4 HOH HOH 2097 B HOH 2098 4 HOH HOH 2098 B DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DC 3 n 3 DC 3 A DG 4 n 4 DG 4 A DA 5 n 5 DA 5 A DA 6 n 6 DA 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A DC 9 n 9 DC 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DC 13 n 1 DC 13 B DG 14 n 2 DG 14 B DC 15 n 3 DC 15 B DG 16 n 4 DG 16 B DA 17 n 5 DA 17 B DA 18 n 6 DA 18 B DT 19 n 7 DT 19 B DT 20 n 8 DT 20 B DC 21 n 9 DC 21 B DG 22 n 10 DG 22 B DC 23 n 11 DC 23 B DG 24 n 12 DG 24 B author_and_software_defined_assembly PISA 2 dimeric 1600 -14.4 4550 A HOH 2004 G O HOH 3_645 A MG 1013 C MG MG 1_555 A HOH 2025 G O HOH 3_645 91.0 A HOH 2004 G O HOH 3_645 A MG 1013 C MG MG 1_555 A HOH 2060 G O HOH 1_555 87.3 A HOH 2025 G O HOH 3_645 A MG 1013 C MG MG 1_555 A HOH 2060 G O HOH 1_555 175.4 A HOH 2004 G O HOH 3_645 A MG 1013 C MG MG 1_555 A HOH 2061 G O HOH 1_555 174.5 A HOH 2025 G O HOH 3_645 A MG 1013 C MG MG 1_555 A HOH 2061 G O HOH 1_555 90.2 A HOH 2060 G O HOH 1_555 A MG 1013 C MG MG 1_555 A HOH 2061 G O HOH 1_555 91.9 A HOH 2004 G O HOH 3_645 A MG 1013 C MG MG 1_555 A HOH 2073 G O HOH 1_555 94.3 A HOH 2025 G O HOH 3_645 A MG 1013 C MG MG 1_555 A HOH 2073 G O HOH 1_555 88.5 A HOH 2060 G O HOH 1_555 A MG 1013 C MG MG 1_555 A HOH 2073 G O HOH 1_555 87.3 A HOH 2061 G O HOH 1_555 A MG 1013 C MG MG 1_555 A HOH 2073 G O HOH 1_555 91.1 A HOH 2004 G O HOH 3_645 A MG 1013 C MG MG 1_555 B HOH 2079 H O HOH 3_645 86.6 A HOH 2025 G O HOH 3_645 A MG 1013 C MG MG 1_555 B HOH 2079 H O HOH 3_645 94.7 A HOH 2060 G O HOH 1_555 A MG 1013 C MG MG 1_555 B HOH 2079 H O HOH 3_645 89.5 A HOH 2061 G O HOH 1_555 A MG 1013 C MG MG 1_555 B HOH 2079 H O HOH 3_645 88.0 A HOH 2073 G O HOH 1_555 A MG 1013 C MG MG 1_555 B HOH 2079 H O HOH 3_645 176.6 A HOH 2041 G O HOH 1_555 A MG 1014 D MG MG 1_555 A HOH 2044 G O HOH 1_555 91.6 A HOH 2041 G O HOH 1_555 A MG 1014 D MG MG 1_555 B DG 22 B OP1 DG 10 1_655 83.0 A HOH 2044 G O HOH 1_555 A MG 1014 D MG MG 1_555 B DG 22 B OP1 DG 10 1_655 174.3 A HOH 2041 G O HOH 1_555 A MG 1014 D MG MG 1_555 B HOH 2073 H O HOH 1_655 168.7 A HOH 2044 G O HOH 1_555 A MG 1014 D MG MG 1_555 B HOH 2073 H O HOH 1_655 89.4 B DG 22 B OP1 DG 10 1_655 A MG 1014 D MG MG 1_555 B HOH 2073 H O HOH 1_655 96.2 A HOH 2041 G O HOH 1_555 A MG 1014 D MG MG 1_555 B HOH 2074 H O HOH 1_655 82.9 A HOH 2044 G O HOH 1_555 A MG 1014 D MG MG 1_555 B HOH 2074 H O HOH 1_655 89.2 B DG 22 B OP1 DG 10 1_655 A MG 1014 D MG MG 1_555 B HOH 2074 H O HOH 1_655 91.8 B HOH 2073 H O HOH 1_655 A MG 1014 D MG MG 1_555 B HOH 2074 H O HOH 1_655 85.8 A HOH 2100 G O HOH 4_465 B MG 1026 F MG MG 1_555 A HOH 2101 G O HOH 4_465 99.3 A HOH 2100 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2053 H O HOH 1_555 90.7 A HOH 2101 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2053 H O HOH 1_555 83.0 A HOH 2100 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2059 H O HOH 1_555 174.6 A HOH 2101 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2059 H O HOH 1_555 85.7 B HOH 2053 H O HOH 1_555 B MG 1026 F MG MG 1_555 B HOH 2059 H O HOH 1_555 87.9 A HOH 2100 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2097 H O HOH 1_555 89.3 A HOH 2101 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2097 H O HOH 1_555 87.1 B HOH 2053 H O HOH 1_555 B MG 1026 F MG MG 1_555 B HOH 2097 H O HOH 1_555 170.0 B HOH 2059 H O HOH 1_555 B MG 1026 F MG MG 1_555 B HOH 2097 H O HOH 1_555 93.0 A HOH 2100 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2098 H O HOH 1_555 80.6 A HOH 2101 G O HOH 4_465 B MG 1026 F MG MG 1_555 B HOH 2098 H O HOH 1_555 178.9 B HOH 2053 H O HOH 1_555 B MG 1026 F MG MG 1_555 B HOH 2098 H O HOH 1_555 98.1 B HOH 2059 H O HOH 1_555 B MG 1026 F MG MG 1_555 B HOH 2098 H O HOH 1_555 94.4 B HOH 2097 H O HOH 1_555 B MG 1026 F MG MG 1_555 B HOH 2098 H O HOH 1_555 91.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B N24 O D98 HOH 1025 2096 2.01 1 B B O O HOH HOH 2009 2010 2.09 1 A A O O HOH HOH 2036 2088 2.19 1 B DC 21 0.067 SIDE CHAIN 1 -2.52 0.40 121.90 119.38 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 3.83 0.50 117.40 121.23 A A A C4 C5 C6 DC DC DC 1 1 1 N 1 -2.55 0.40 110.80 108.25 A A A C4 C5 N7 DG DG DG 2 2 2 N 1 3.67 0.50 104.30 107.97 A A A C5 N7 C8 DG DG DG 2 2 2 N 1 -3.73 0.50 113.10 109.37 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -4.09 0.60 119.90 115.81 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 -4.06 0.40 121.90 117.84 A A A N3 C4 C5 DC DC DC 3 3 3 N 1 3.08 0.50 113.10 116.18 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 -2.70 0.40 106.40 103.70 A A A C8 N9 C4 DG DG DG 4 4 4 N 1 -3.01 0.50 113.80 110.79 A A A N7 C8 N9 DA DA DA 5 5 5 N 1 -5.30 0.80 105.90 100.60 A A A O4' C1' C2' DC DC DC 11 11 11 N 1 -7.56 0.70 108.00 100.44 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 -6.50 0.90 105.70 99.20 A A A O5' P OP2 DG DG DG 12 12 12 N 1 7.23 0.60 106.00 113.23 B B B O4' C4' C3' DG DG DG 14 14 14 N 1 -7.81 1.00 110.10 102.29 B B B C1' O4' C4' DG DG DG 14 14 14 N 1 -6.32 0.70 108.00 101.68 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -2.67 0.40 110.80 108.13 B B B C4 C5 N7 DG DG DG 14 14 14 N 1 -4.28 0.70 108.00 103.72 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 -3.67 0.50 117.70 114.03 B B B C5 C6 N1 DA DA DA 18 18 18 N 1 -3.05 0.50 103.90 100.85 B B B C5 N7 C8 DA DA DA 18 18 18 N 1 3.01 0.50 113.80 116.81 B B B N7 C8 N9 DA DA DA 18 18 18 N 1 -4.44 0.60 123.90 119.46 B B B N1 C2 N3 DG DG DG 22 22 22 N 1 3.04 0.50 111.90 114.94 B B B C2 N3 C4 DG DG DG 22 22 22 N 1 3.25 0.50 111.50 114.75 B B B C5 C6 N1 DG DG DG 22 22 22 N 1 6.36 0.90 103.10 109.46 B B B C4' C3' C2' DC DC DC 23 23 23 N 1 3.04 0.50 119.90 122.94 B B B C2 N3 C4 DC DC DC 23 23 23 N 1 -4.82 0.40 104.50 99.68 B B B O4' C4' C3' DG DG DG 24 24 24 N 1 A A O3' C3' DA DA 6 6 -0.037 0.006 1.419 1.382 N 1 B B O3' C3' DC DC 13 13 -0.059 0.006 1.419 1.360 N 1 B B O3' P DG DC 14 15 -0.072 0.012 1.607 1.535 Y 1 B B C6 N1 DT DT 20 20 0.043 0.007 1.378 1.421 N 1 B B C3' C2' DC DC 23 23 -0.057 0.008 1.516 1.459 N 1 B B O3' C3' DC DC 23 23 -0.042 0.006 1.419 1.377 N 12.920 -0.12 0.00 0.00 -0.12 0.00 0.25 0.971 0.951 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. 0.20704 0.15483 0.15755 1.25 14.76 925 17027 5.2 98.84 1.359 0.033 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.049 0.055 0.80 0.80 1.40 PDB ENTRY 1FQ2 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.25 14.76 192 709 31 486 0 0.020 0.021 576 0.001 0.020 239 2.574 3.000 882 4.559 3.029 582 0.111 0.200 94 0.034 0.020 288 0.037 0.021 57 3.329 3.000 576 4.309 4.500 882 2.644 3.000 545 7.302 3.000 487 0.274 0.212 1.282 82 1230 20 100.00 0 1.25 39.90 4AGZ 18006 0.0 0.05 1 17.30 6.5 99.0 0.55 1.25 1.32 3.10 1 6.6 100.0 refinement REFMAC 5.5.0110 data reduction MOSFLM data scaling SCALA phasing PHASER CRYSTAL STRUCTURE OF THE DB 985-D(CGCGAATTCGCG)2 COMPLEX AT 1.25 A RESOLUTION. 1 N N 1 N N 2 N N 2 N N 3 N N 2 N N 4 N N 4 N N metalc 2.069 A MG 1013 C MG MG 1_555 A HOH 2004 G O HOH 3_645 metalc 2.105 A MG 1013 C MG MG 1_555 A HOH 2025 G O HOH 3_645 metalc 2.113 A MG 1013 C MG MG 1_555 A HOH 2060 G O HOH 1_555 metalc 2.054 A MG 1013 C MG MG 1_555 A HOH 2061 G O HOH 1_555 metalc 2.052 A MG 1013 C MG MG 1_555 A HOH 2073 G O HOH 1_555 metalc 2.035 A MG 1013 C MG MG 1_555 B HOH 2079 H O HOH 3_645 metalc 2.065 A MG 1014 D MG MG 1_555 A HOH 2041 G O HOH 1_555 metalc 2.047 A MG 1014 D MG MG 1_555 A HOH 2044 G O HOH 1_555 metalc 2.003 A MG 1014 D MG MG 1_555 B DG 22 B OP1 DG 10 1_655 metalc 2.095 A MG 1014 D MG MG 1_555 B HOH 2073 H O HOH 1_655 metalc 2.101 A MG 1014 D MG MG 1_555 B HOH 2074 H O HOH 1_655 metalc 2.115 A HOH 2100 G O HOH 4_465 B MG 1026 F MG MG 1_555 metalc 2.253 A HOH 2101 G O HOH 4_465 B MG 1026 F MG MG 1_555 metalc 2.079 B MG 1026 F MG MG 1_555 B HOH 2053 H O HOH 1_555 metalc 2.075 B MG 1026 F MG MG 1_555 B HOH 2059 H O HOH 1_555 metalc 1.877 B MG 1026 F MG MG 1_555 B HOH 2097 H O HOH 1_555 metalc 2.220 B MG 1026 F MG MG 1_555 B HOH 2098 H O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA DNA, DNA DOUBLE HELIX, DNA-DRUG COMPLEX, DNA HYDRATION 4AGZ PDB 1 4AGZ 1 12 4AGZ 1 12 4AGZ A 1 1 12 13 24 4AGZ 13 24 4AGZ B 1 1 12 BINDING SITE FOR RESIDUE MG A 1013 A MG 1013 Software 6 BINDING SITE FOR RESIDUE MG A 1014 A MG 1014 Software 6 BINDING SITE FOR RESIDUE D98 B 1025 B D98 1025 Software 17 BINDING SITE FOR RESIDUE MG B 1026 B MG 1026 Software 6 A HOH 2004 G HOH 6 3_645 A HOH 2025 G HOH 6 3_645 A HOH 2060 G HOH 6 1_555 A HOH 2061 G HOH 6 1_555 A HOH 2073 G HOH 6 1_555 B HOH 2079 H HOH 6 3_645 A HOH 2041 G HOH 6 1_555 A HOH 2044 G HOH 6 1_555 B DG 22 B DG 10 6 1_655 B HOH 2069 H HOH 6 1_655 B HOH 2073 H HOH 6 1_655 B HOH 2074 H HOH 6 1_655 A DA 6 A DA 6 17 1_555 A DT 7 A DT 7 17 1_555 A DT 8 A DT 8 17 1_555 A DC 9 A DC 9 17 1_555 A HOH 2059 G HOH 17 1_555 A HOH 2084 G HOH 17 1_555 B DA 18 B DA 6 17 1_555 B DT 19 B DT 7 17 1_555 B DT 20 B DT 8 17 1_555 B DC 21 B DC 9 17 1_555 B HOH 2069 H HOH 17 1_555 B HOH 2071 H HOH 17 1_555 B HOH 2092 H HOH 17 1_555 B HOH 2093 H HOH 17 1_555 B HOH 2094 H HOH 17 1_555 B HOH 2095 H HOH 17 1_555 B HOH 2096 H HOH 17 1_555 A HOH 2100 G HOH 6 4_465 A HOH 2101 G HOH 6 4_465 B HOH 2053 H HOH 6 1_555 B HOH 2059 H HOH 6 1_555 B HOH 2097 H HOH 6 1_555 B HOH 2098 H HOH 6 1_555 19 P 21 21 21