0.041178
0.000000
0.000000
0.000000
0.024822
0.000000
0.000000
0.000000
0.015461
0.00000
0.00000
0.00000
Munnur, D.G.
Mitchell, E.P.
Forsyth, V.T.
Teixeira, S.C.M.
Neidle, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
24.285
40.287
64.678
C21 H18 N6 O
370.407
2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
N
Y
15
N
C
Y
16
N
C
Y
17
N
N
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
C
N
26
N
N
N
27
N
N
N
28
N
O
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
O
N
48
N
P
N
49
N
O
N
50
N
O
N
51
N
O
N
52
N
C
N
53
R
C
N
54
N
O
N
55
S
C
N
56
N
O
N
57
N
C
N
58
R
C
Y
59
N
N
Y
60
N
C
Y
61
N
N
Y
62
N
C
Y
63
N
C
N
64
N
N
Y
65
N
N
Y
66
N
C
Y
67
N
N
Y
68
N
C
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
O
N
84
N
P
N
85
N
O
N
86
N
O
N
87
N
O
N
88
N
C
N
89
R
C
N
90
N
O
N
91
S
C
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
N
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
C
N
100
N
N
N
101
N
C
N
102
N
C
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
O
N
118
N
P
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
C
N
123
R
C
N
124
N
O
N
125
S
C
N
126
N
O
N
127
N
C
N
128
R
C
Y
129
N
N
Y
130
N
C
Y
131
N
N
Y
132
N
C
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
C
N
137
N
N
N
138
N
N
Y
139
N
C
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
O
N
155
N
P
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
C
N
160
R
C
N
161
N
O
N
162
S
C
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
N
N
167
N
C
N
168
N
O
N
169
N
N
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
MG
Y
1
N
sing
Y
2
N
doub
Y
3
N
doub
N
4
N
sing
Y
5
N
sing
N
6
N
sing
Y
7
N
doub
Y
8
N
sing
N
9
N
sing
Y
10
N
sing
Y
11
N
doub
Y
12
N
doub
Y
13
N
sing
Y
14
N
doub
N
15
N
sing
Y
16
N
sing
Y
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
sing
Y
21
N
doub
Y
22
N
sing
Y
23
N
doub
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
Y
73
N
sing
Y
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
Y
78
N
sing
Y
79
N
doub
N
80
N
sing
Y
81
N
doub
N
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
doub
N
86
N
sing
Y
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
Y
152
N
doub
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
To be Published
0353
A Detailed Study of Water Network in the Minor Groove of D(Cgcgaattcgcg)2 and D(Cgcaaatttgcg)2 in Presence of Linear Groove Binders
10.2210/pdb4ah0/pdb
pdb_00004ah0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
TOROIDAL MIRROR
CCD
2009-10-22
MARMOSAIC 225 mm CCD
SI (111)
SINGLE WAVELENGTH
M
x-ray
1
0.873
1.0
ID23-2
ESRF
0.873
SYNCHROTRON
ESRF BEAMLINE ID23-2
3662.404
5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*GP)-3'
2
syn
polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
370.407
2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE
1
syn
non-polymer
18.015
water
180
nat
water
no
no
(DC)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG)
CGCAAATTTGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1
2.17
61.72
NONE
VAPOR DIFFUSION, SITTING DROP
6.5
MAGNESIUM CHLORIDE, DNA, DB985, MPD, SPERMINE TETRAHYDROCHLORIDE, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 285 K, PH 6.50
285
3.667
1
19
A
1
B
24
1.136
A_DC1:DG24_B
1
-18.468
0.243
0.051
-0.144
1.820
1
19
A
2
B
23
-1.935
A_DG2:DC23_B
2
-6.543
-0.188
0.247
-0.145
-1.174
1
19
A
3
B
22
0.125
A_DC3:DG22_B
3
-5.249
0.201
0.026
-0.109
11.020
1
20
A
4
B
21
2.268
A_DA4:DT21_B
4
-13.354
-0.120
-0.226
-0.011
7.442
1
20
A
5
B
20
3.446
A_DA5:DT20_B
5
-18.306
0.047
-0.068
-0.049
2.734
1
20
A
6
B
19
7.926
A_DA6:DT19_B
6
-20.028
0.078
0.085
-0.080
-1.192
1
20
A
7
B
18
6.482
A_DT7:DA18_B
7
-21.969
-0.019
0.041
-0.102
-7.508
1
20
A
8
B
17
4.286
A_DT8:DA17_B
8
-17.145
-0.031
0.018
-0.130
-9.873
1
20
A
9
B
16
-2.273
A_DT9:DA16_B
9
-12.377
-0.045
-0.176
-0.064
10.311
1
19
A
10
B
15
1.561
A_DG10:DC15_B
10
-4.466
-0.163
0.083
-0.119
10.105
1
19
A
11
B
14
-2.836
A_DC11:DG14_B
11
-25.038
0.040
0.196
-0.208
9.655
1
19
A
12
B
13
-2.016
A_DG12:DC13_B
12
18.082
-0.316
-0.142
-0.105
3.349
35.854
A
A
1
2
9.657
B
B
24
23
3.353
5.919
-0.276
0.211
AA_DC1DG2:DC23DG24_BB
1
-0.874
1.426
35.368
-0.533
0.319
3.403
40.851
A
A
2
3
-5.378
B
B
23
22
3.420
-3.747
0.801
0.513
AA_DG2DC3:DG22DC23_BB
2
2.538
-3.644
40.610
1.165
-0.856
3.128
29.533
A
A
3
4
14.615
B
B
22
21
3.158
7.346
-0.409
0.672
AA_DC3DA4:DT21DG22_BB
3
4.543
-9.038
28.269
-0.215
1.752
3.331
37.848
A
A
4
5
3.259
B
B
21
20
3.326
2.113
0.010
0.209
AA_DA4DA5:DT20DT21_BB
4
-1.146
1.769
37.775
0.045
-0.166
3.252
36.477
A
A
5
6
6.416
B
B
20
19
3.318
4.007
0.475
-0.197
AA_DA5DA6:DT19DT20_BB
5
-1.801
2.883
36.221
-0.874
-1.010
3.290
30.729
A
A
6
7
1.470
B
B
19
18
3.306
0.779
-0.218
-0.596
AA_DA6DT7:DA18DT19_BB
6
0.063
-0.119
30.720
-1.278
0.423
3.304
35.896
A
A
7
8
4.685
B
B
18
17
3.339
2.884
-0.440
-0.195
AA_DT7DT8:DA17DA18_BB
7
0.763
-1.240
35.776
-0.736
0.826
3.273
39.958
A
A
8
9
-2.043
B
B
17
16
3.297
-1.395
-0.177
0.219
AA_DT8DT9:DA16DA17_BB
8
2.338
-3.424
39.869
0.481
0.529
2.993
27.886
A
A
9
10
7.792
B
B
16
15
2.972
3.734
0.670
1.173
AA_DT9DG10:DC15DA16_BB
9
-3.544
7.395
27.416
1.614
-2.167
3.176
45.153
A
A
10
11
-14.350
B
B
15
14
3.360
-10.915
-1.104
0.647
AA_DG10DC11:DG14DC15_BB
10
-2.559
3.365
43.810
1.835
1.206
3.369
37.510
A
A
11
12
-14.836
B
B
14
13
3.590
-9.436
1.262
0.809
AA_DC11DG12:DC13DG14_BB
11
2.891
-4.546
36.234
2.595
-1.553
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
pdbx_seq_map_depositor_info
struct_biol
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Experimental preparation
Other
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-01-16
1
1
2019-01-30
1
2
2023-12-20
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
_pdbx_seq_map_depositor_info.one_letter_code_mod
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF THE DB 921-D(CGCAAATTTGCG)2 COMPLEX AT 1.42 A RESOLUTION
CRYSTAL STRUCTURE OF THE DB 985-D(CGCGAATTCGCG)2 COMPLEX AT 1.25 A RESOLUTION.
PDBE
Y
PDBE
2012-02-02
REL
REL
1
A
O
HOH
2011
6.38
1
A
O
HOH
2025
7.57
1
A
O
HOH
2026
6.27
1
B
O
HOH
2016
6.33
1
B
O
HOH
2079
5.81
1
B
O
HOH
2081
5.82
MG
MAGNESIUM ION
D98
2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE
HOH
water
32630
SYNTHETIC CONSTRUCT
sample
1S2R
PDB ENTRY 1S2R
PDB
experimental model
MG
3001
2
MG
MG
3001
A
MG
3002
2
MG
MG
3002
B
MG
3003
2
MG
MG
3003
B
D98
1025
3
D98
D98
1025
B
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
HOH
2041
4
HOH
HOH
2041
B
HOH
2042
4
HOH
HOH
2042
B
HOH
2043
4
HOH
HOH
2043
B
HOH
2044
4
HOH
HOH
2044
B
HOH
2045
4
HOH
HOH
2045
B
HOH
2046
4
HOH
HOH
2046
B
HOH
2047
4
HOH
HOH
2047
B
HOH
2048
4
HOH
HOH
2048
B
HOH
2049
4
HOH
HOH
2049
B
HOH
2050
4
HOH
HOH
2050
B
HOH
2051
4
HOH
HOH
2051
B
HOH
2052
4
HOH
HOH
2052
B
HOH
2053
4
HOH
HOH
2053
B
HOH
2054
4
HOH
HOH
2054
B
HOH
2055
4
HOH
HOH
2055
B
HOH
2056
4
HOH
HOH
2056
B
HOH
2057
4
HOH
HOH
2057
B
HOH
2058
4
HOH
HOH
2058
B
HOH
2060
4
HOH
HOH
2060
B
HOH
2061
4
HOH
HOH
2061
B
HOH
2062
4
HOH
HOH
2062
B
HOH
2063
4
HOH
HOH
2063
B
HOH
2064
4
HOH
HOH
2064
B
HOH
2065
4
HOH
HOH
2065
B
HOH
2066
4
HOH
HOH
2066
B
HOH
2067
4
HOH
HOH
2067
B
HOH
2068
4
HOH
HOH
2068
B
HOH
2069
4
HOH
HOH
2069
B
HOH
2070
4
HOH
HOH
2070
B
HOH
2071
4
HOH
HOH
2071
B
HOH
2072
4
HOH
HOH
2072
B
HOH
2073
4
HOH
HOH
2073
B
HOH
2074
4
HOH
HOH
2074
B
HOH
2075
4
HOH
HOH
2075
B
HOH
2076
4
HOH
HOH
2076
B
HOH
2077
4
HOH
HOH
2077
B
HOH
2078
4
HOH
HOH
2078
B
HOH
2079
4
HOH
HOH
2079
B
HOH
2080
4
HOH
HOH
2080
B
HOH
2081
4
HOH
HOH
2081
B
HOH
2082
4
HOH
HOH
2082
B
HOH
2083
4
HOH
HOH
2083
B
DC
1
n
1
DC
1
A
DG
2
n
2
DG
2
A
DC
3
n
3
DC
3
A
DA
4
n
4
DA
4
A
DA
5
n
5
DA
5
A
DA
6
n
6
DA
6
A
DT
7
n
7
DT
7
A
DT
8
n
8
DT
8
A
DT
9
n
9
DT
9
A
DG
10
n
10
DG
10
A
DC
11
n
11
DC
11
A
DG
12
n
12
DG
12
A
DC
13
n
1
DC
13
B
DG
14
n
2
DG
14
B
DC
15
n
3
DC
15
B
DA
16
n
4
DA
16
B
DA
17
n
5
DA
17
B
DA
18
n
6
DA
18
B
DT
19
n
7
DT
19
B
DT
20
n
8
DT
20
B
DT
21
n
9
DT
21
B
DG
22
n
10
DG
22
B
DC
23
n
11
DC
23
B
DG
24
n
12
DG
24
B
author_and_software_defined_assembly
PISA
2
dimeric
1560
-13.1
4560
A
HOH
2004
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2028
G
O
HOH
1_555
91.0
A
HOH
2004
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2045
G
O
HOH
1_555
85.0
A
HOH
2028
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2045
G
O
HOH
1_555
94.8
A
HOH
2004
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2063
G
O
HOH
3_555
86.2
A
HOH
2028
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2063
G
O
HOH
3_555
175.7
A
HOH
2045
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2063
G
O
HOH
3_555
88.2
A
HOH
2004
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2064
G
O
HOH
3_555
173.1
A
HOH
2028
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2064
G
O
HOH
3_555
91.1
A
HOH
2045
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2064
G
O
HOH
3_555
88.3
A
HOH
2063
G
O
HOH
3_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2064
G
O
HOH
3_555
92.0
A
HOH
2004
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2073
G
O
HOH
3_555
94.6
A
HOH
2028
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2073
G
O
HOH
3_555
89.2
A
HOH
2045
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2073
G
O
HOH
3_555
176.0
A
HOH
2063
G
O
HOH
3_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2073
G
O
HOH
3_555
87.8
A
HOH
2064
G
O
HOH
3_555
A
MG
3001
C
MG
MG
1_555
A
HOH
2073
G
O
HOH
3_555
92.0
A
HOH
2098
G
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
DG
22
B
OP1
DG
10
2_454
94.6
A
HOH
2098
G
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2017
H
O
HOH
1_555
88.4
B
DG
22
B
OP1
DG
10
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2017
H
O
HOH
1_555
88.1
A
HOH
2098
G
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2055
H
O
HOH
2_454
173.9
B
DG
22
B
OP1
DG
10
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2055
H
O
HOH
2_454
80.6
B
HOH
2017
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2055
H
O
HOH
2_454
95.3
A
HOH
2098
G
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2061
H
O
HOH
2_454
85.6
B
DG
22
B
OP1
DG
10
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2061
H
O
HOH
2_454
94.9
B
HOH
2017
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2061
H
O
HOH
2_454
173.5
B
HOH
2055
H
O
HOH
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2061
H
O
HOH
2_454
90.9
A
HOH
2098
G
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2082
H
O
HOH
1_555
87.5
B
DG
22
B
OP1
DG
10
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2082
H
O
HOH
1_555
177.3
B
HOH
2017
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2082
H
O
HOH
1_555
90.4
B
HOH
2055
H
O
HOH
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2082
H
O
HOH
1_555
97.4
B
HOH
2061
H
O
HOH
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2082
H
O
HOH
1_555
86.8
A
HOH
2098
G
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2083
H
O
HOH
1_555
43.9
B
DG
22
B
OP1
DG
10
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2083
H
O
HOH
1_555
67.3
B
HOH
2017
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2083
H
O
HOH
1_555
119.7
B
HOH
2055
H
O
HOH
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2083
H
O
HOH
1_555
130.0
B
HOH
2061
H
O
HOH
2_454
B
MG
3003
E
MG
MG
1_555
B
HOH
2083
H
O
HOH
1_555
56.7
B
HOH
2082
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
B
HOH
2083
H
O
HOH
1_555
115.4
B
HOH
2067
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2077
H
O
HOH
1_555
89.5
B
HOH
2067
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2078
H
O
HOH
1_555
83.1
B
HOH
2077
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2078
H
O
HOH
1_555
90.9
B
HOH
2067
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2079
H
O
HOH
1_555
86.2
B
HOH
2077
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2079
H
O
HOH
1_555
174.1
B
HOH
2078
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2079
H
O
HOH
1_555
84.6
B
HOH
2067
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2080
H
O
HOH
1_555
87.0
B
HOH
2077
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2080
H
O
HOH
1_555
94.0
B
HOH
2078
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2080
H
O
HOH
1_555
168.9
B
HOH
2079
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2080
H
O
HOH
1_555
89.8
B
HOH
2067
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2081
H
O
HOH
1_555
169.0
B
HOH
2077
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2081
H
O
HOH
1_555
101.5
B
HOH
2078
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2081
H
O
HOH
1_555
96.8
B
HOH
2079
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2081
H
O
HOH
1_555
82.9
B
HOH
2080
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
B
HOH
2081
H
O
HOH
1_555
91.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
O
HOH
HOH
2036
2091
1.87
1
A
A
O
O
HOH
HOH
2036
2037
2.13
1
B
B
N23
O
D98
HOH
1025
2075
2.14
1
A
DC
11
0.064
SIDE CHAIN
1
B
DC
15
0.073
SIDE CHAIN
1
-4.74
0.70
108.00
103.26
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
3.22
0.50
121.00
124.22
A
A
A
C5
C6
N1
DC
DC
DC
3
3
3
N
1
6.14
0.50
113.80
119.94
A
A
A
N7
C8
N9
DA
DA
DA
4
4
4
N
1
-3.67
0.40
105.80
102.13
A
A
A
C8
N9
C4
DA
DA
DA
4
4
4
N
1
-6.18
0.70
108.00
101.82
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
-3.65
0.50
103.90
100.25
A
A
A
C5
N7
C8
DA
DA
DA
5
5
5
N
1
5.09
0.50
113.80
118.89
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
1
-3.33
0.40
105.80
102.47
A
A
A
C8
N9
C4
DA
DA
DA
5
5
5
N
1
-4.05
0.50
110.70
106.65
A
A
A
C4
C5
N7
DA
DA
DA
6
6
6
N
1
3.29
0.50
103.90
107.19
A
A
A
C5
N7
C8
DA
DA
DA
6
6
6
N
1
-6.15
1.00
110.10
103.95
A
A
A
C1'
O4'
C4'
DT
DT
DT
7
7
7
N
1
-5.09
0.70
108.00
102.91
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
13.86
1.50
119.60
133.46
A
A
A
OP1
P
OP2
DT
DT
DT
9
9
9
N
1
-9.86
0.90
105.70
95.84
A
A
A
O5'
P
OP2
DT
DT
DT
9
9
9
N
1
-4.23
0.60
118.00
113.77
A
A
A
C4
C5
C6
DT
DT
DT
9
9
9
N
1
3.70
0.60
123.70
127.40
A
A
A
C5
C6
N1
DT
DT
DT
9
9
9
N
1
-3.51
0.50
104.30
100.79
A
A
A
C5
N7
C8
DG
DG
DG
10
10
10
N
1
4.49
0.70
118.00
122.49
A
A
A
N3
C4
N4
DC
DC
DC
11
11
11
N
1
3.49
0.40
121.90
125.39
B
B
B
N3
C4
C5
DC
DC
DC
13
13
13
N
1
6.75
0.60
106.00
112.75
B
B
B
O4'
C4'
C3'
DG
DG
DG
14
14
14
N
1
-7.92
1.00
110.10
102.18
B
B
B
C1'
O4'
C4'
DG
DG
DG
14
14
14
N
1
7.67
1.20
119.70
127.37
B
B
B
C3'
O3'
P
DA
DA
DA
16
16
17
Y
1
-2.44
0.40
105.80
103.36
B
B
B
N9
C4
C5
DA
DA
DA
17
17
17
N
1
3.96
0.60
122.30
126.26
B
B
B
N3
C2
O2
DT
DT
DT
19
19
19
N
1
-2.92
0.40
106.40
103.48
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
1
2.78
0.40
105.40
108.18
B
B
B
N9
C4
C5
DG
DG
DG
22
22
22
N
1
3.30
0.40
120.30
123.60
B
B
B
C6
N1
C2
DC
DC
DC
23
23
23
N
1
-3.01
0.50
121.00
117.99
B
B
B
C5
C6
N1
DC
DC
DC
23
23
23
N
1
A
A
C4'
C3'
DA
DA
5
5
0.078
0.010
1.529
1.607
N
1
B
B
O3'
C3'
DC
DC
13
13
-0.039
0.006
1.419
1.380
N
1
B
B
O4'
C1'
DG
DG
14
14
0.087
0.011
1.420
1.507
N
1
B
B
O3'
C3'
DG
DG
14
14
-0.062
0.006
1.419
1.357
N
1
B
B
N9
C4
DA
DA
17
17
0.041
0.006
1.374
1.415
N
1
B
B
C3'
C2'
DC
DC
23
23
-0.086
0.008
1.516
1.430
N
1
B
B
O3'
C3'
DC
DC
23
23
-0.040
0.006
1.419
1.379
N
14.068
0.28
0.00
0.00
-0.28
0.00
0.00
0.979
0.963
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES - REFINED INDIVIDUALLY
0.20308
0.15286
0.15536
1.20
14.40
1053
19484
5.1
99.99
1.282
0.032
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.042
0.047
0.80
0.80
1.40
PDB ENTRY 1S2R
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.20
14.40
180
697
31
486
0
0.025
0.021
575
0.002
0.020
238
2.724
2.980
881
1.374
3.030
579
0.147
0.200
94
0.038
0.020
288
0.001
0.021
57
3.760
3.000
575
4.922
4.500
881
3.062
3.000
544
8.529
3.000
486
0.258
0.208
1.231
76
1413
20
100.00
1.20
40.29
4AH0
20606
0.0
0.07
1
16.70
9.7
100.0
0.42
1.20
1.26
3.70
1
6.9
100.0
refinement
REFMAC
5.5.0110
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
CRYSTAL STRUCTURE OF THE DB 985-D(CGCAAATTTGCG)2 COMPLEX AT 1.20 A RESOLUTION
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
metalc
2.112
A
HOH
2004
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
metalc
2.062
A
HOH
2028
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
metalc
2.049
A
HOH
2045
G
O
HOH
1_555
A
MG
3001
C
MG
MG
1_555
metalc
2.074
A
HOH
2063
G
O
HOH
3_555
A
MG
3001
C
MG
MG
1_555
metalc
2.089
A
HOH
2064
G
O
HOH
3_555
A
MG
3001
C
MG
MG
1_555
metalc
2.056
A
HOH
2073
G
O
HOH
3_555
A
MG
3001
C
MG
MG
1_555
metalc
2.134
A
HOH
2098
G
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
metalc
1.891
B
DG
22
B
OP1
DG
10
2_454
B
MG
3003
E
MG
MG
1_555
metalc
2.146
B
HOH
2017
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
metalc
2.301
B
HOH
2055
H
O
HOH
2_454
B
MG
3003
E
MG
MG
1_555
metalc
2.047
B
HOH
2061
H
O
HOH
2_454
B
MG
3003
E
MG
MG
1_555
metalc
2.204
B
HOH
2067
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
metalc
1.940
B
HOH
2077
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
metalc
2.409
B
HOH
2078
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
metalc
2.005
B
HOH
2079
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
metalc
2.141
B
HOH
2080
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
metalc
2.001
B
HOH
2081
H
O
HOH
1_555
B
MG
3002
D
MG
MG
1_555
metalc
2.245
B
HOH
2082
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
metalc
2.592
B
HOH
2083
H
O
HOH
1_555
B
MG
3003
E
MG
MG
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
21
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
21
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
16
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
16
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
DNA, MINOR GROOVE, DODECAMER, A3T3, DNA-DRUG COMPLEX, DNA HYDRATION, HYDRATED MAGNESIUM
4AH0
PDB
1
4AH0
1
12
4AH0
1
12
4AH0
A
1
1
12
13
24
4AH0
13
24
4AH0
B
1
1
12
BINDING SITE FOR RESIDUE MG A 3001
A
MG
3001
Software
6
BINDING SITE FOR RESIDUE D98 B 1025
B
D98
1025
Software
13
BINDING SITE FOR RESIDUE MG B 3002
B
MG
3002
Software
6
BINDING SITE FOR RESIDUE MG B 3003
B
MG
3003
Software
7
A
HOH
2004
G
HOH
6
1_555
A
HOH
2028
G
HOH
6
1_555
A
HOH
2045
G
HOH
6
1_555
A
HOH
2063
G
HOH
6
3_555
A
HOH
2064
G
HOH
6
3_555
A
HOH
2073
G
HOH
6
3_555
A
DA
6
A
DA
6
13
1_555
A
DT
7
A
DT
7
13
1_555
A
DT
8
A
DT
8
13
1_555
A
DT
9
A
DT
9
13
1_555
A
HOH
2062
G
HOH
13
1_555
B
DA
18
B
DA
6
13
1_555
B
DT
19
B
DT
7
13
1_555
B
DT
20
B
DT
8
13
1_555
B
DT
21
B
DT
9
13
1_555
B
DG
22
B
DG
10
13
1_555
B
HOH
2055
H
HOH
13
1_555
B
HOH
2075
H
HOH
13
1_555
B
HOH
2076
H
HOH
13
1_555
B
HOH
2067
H
HOH
6
1_555
B
HOH
2077
H
HOH
6
1_555
B
HOH
2078
H
HOH
6
1_555
B
HOH
2079
H
HOH
6
1_555
B
HOH
2080
H
HOH
6
1_555
B
HOH
2081
H
HOH
6
1_555
A
HOH
2098
G
HOH
7
1_555
B
DG
22
B
DG
10
7
2_454
B
HOH
2017
H
HOH
7
1_555
B
HOH
2055
H
HOH
7
2_454
B
HOH
2061
H
HOH
7
2_454
B
HOH
2082
H
HOH
7
1_555
B
HOH
2083
H
HOH
7
1_555
19
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