0.042333 0.000000 0.000000 0.000000 0.025720 0.000000 0.000000 0.000000 0.015959 0.00000 0.00000 0.00000 Munnur, D.G. Mitchell, E.P. Forsyth, V.T. Teixeira, S.C.M. Neidle, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 23.622 38.881 62.660 C21 H18 N6 354.408 2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE DB921 non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N N Y 15 N C Y 16 N C Y 17 N N Y 18 N C Y 19 N C Y 20 N C Y 21 N C N 22 N C N 23 N N N 24 N N N 25 N C N 26 N N N 27 N N N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N O N 47 N P N 48 N O N 49 N O N 50 N O N 51 N C N 52 R C N 53 N O N 54 S C N 55 N O N 56 N C N 57 R C Y 58 N N Y 59 N C Y 60 N N Y 61 N C Y 62 N C N 63 N N Y 64 N N Y 65 N C Y 66 N N Y 67 N C N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N O N 83 N P N 84 N O N 85 N O N 86 N O N 87 N C N 88 R C N 89 N O N 90 S C N 91 N O N 92 N C N 93 R C N 94 N N N 95 N C N 96 N O N 97 N N N 98 N C N 99 N N N 100 N C N 101 N C N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N O N 117 N P N 118 N O N 119 N O N 120 N O N 121 N C N 122 R C N 123 N O N 124 S C N 125 N O N 126 N C N 127 R C Y 128 N N Y 129 N C Y 130 N N Y 131 N C N 132 N C N 133 N O N 134 N N N 135 N C N 136 N N N 137 N N Y 138 N C N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N O N 154 N P N 155 N O N 156 N O N 157 N O N 158 N C N 159 R C N 160 N O N 161 S C N 162 N O N 163 N C N 164 R C N 165 N N N 166 N C N 167 N O N 168 N N N 169 N C N 170 N O N 171 N C N 172 N C N 173 N C N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N O N 190 N H N 191 N H N 192 N MG Y 1 N doub Y 2 N sing N 3 N sing Y 4 N sing N 5 N sing Y 6 N doub Y 7 N sing Y 8 N sing N 9 N sing Y 10 N doub N 11 N sing N 12 N sing Y 13 N doub Y 14 N sing Y 15 N sing N 16 N sing Y 17 N doub N 18 N sing Y 19 N sing Y 20 N sing Y 21 N doub N 22 N sing N 23 N sing Y 24 N doub Y 25 N sing Y 26 N sing Y 27 N doub Y 28 N sing Y 29 N sing Y 30 N sing N 31 N sing Y 32 N doub N 33 N sing Y 34 N doub N 35 N sing Y 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 E doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing Y 72 N sing Y 73 N sing Y 74 N doub N 75 N sing Y 76 N sing Y 77 N sing Y 78 N doub N 79 N sing Y 80 N doub N 81 N sing N 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing Y 145 N sing Y 146 N sing Y 147 N doub N 148 N sing Y 149 N sing N 150 N sing Y 151 N doub N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing To be Published 0353 A Detailed Study of Water Network in the Minor Groove of D(Cgcgaattcgcg)2 and D(Cgcaaatttgcg)2 in Presence of Linear Groove Binders 10.2210/pdb4ah1/pdb pdb_00004ah1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 TOROIDAL MIRROR CCD 2009-07-19 MARMOSAIC 225 mm CCD SI (111) SINGLE WAVELENGTH M x-ray 1 0.873 1.0 ID23-2 ESRF 0.873 SYNCHROTRON ESRF BEAMLINE ID23-2 3662.404 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*GP)-3' 2 syn polymer 354.408 2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 109 nat water no no (DC)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG) CGCAAATTTGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 1 1.97 57.91 NONE VAPOR DIFFUSION, SITTING DROP 6.5 MAGNESIUM CHLORIDE, DNA, DB921, MPD, SPERMINE TETRAHYDROCHLORIDE, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 285 K, PH 6.50 285 -2.634 1 19 A 1 B 24 -0.615 A_DC1:DG24_B 1 17.376 0.150 -0.130 -0.205 -9.803 1 19 A 2 B 23 -5.194 A_DG2:DC23_B 2 -24.138 -0.140 0.455 -0.227 -6.434 1 19 A 3 B 22 2.687 A_DC3:DG22_B 3 -3.313 0.188 0.071 -0.123 12.507 1 20 A 4 B 21 -1.527 A_DA4:DT21_B 4 -15.849 -0.085 -0.137 -0.134 9.454 1 20 A 5 B 20 2.395 A_DA5:DT20_B 5 -18.690 0.046 -0.020 -0.145 4.499 1 20 A 6 B 19 9.610 A_DA6:DT19_B 6 -22.359 -0.059 0.158 -0.003 -3.126 1 20 A 7 B 18 8.616 A_DT7:DA18_B 7 -20.546 -0.115 0.106 -0.062 -8.856 1 20 A 8 B 17 3.631 A_DT8:DA17_B 8 -17.367 -0.036 0.132 -0.192 -11.831 1 20 A 9 B 16 -4.607 A_DT9:DA16_B 9 -13.732 -0.333 -0.037 -0.036 11.213 1 19 A 10 B 15 5.686 A_DG10:DC15_B 10 -1.349 -0.127 0.174 -0.076 4.870 1 19 A 11 B 14 -0.393 A_DC11:DG14_B 11 -18.609 0.189 0.181 -0.168 -1.284 1 19 A 12 B 13 0.637 A_DG12:DC13_B 12 -17.445 -0.262 0.074 -0.186 3.467 41.454 A A 1 2 -19.801 B B 24 23 3.763 -13.757 -0.806 0.471 AA_DC1DG2:DC23DG24_BB 1 -3.371 4.852 39.059 2.340 0.729 3.223 42.713 A A 2 3 -13.007 B B 23 22 3.363 -9.387 0.741 0.582 AA_DG2DC3:DG22DC23_BB 2 4.520 -6.264 41.481 1.762 -0.553 3.100 28.156 A A 3 4 7.986 B B 22 21 3.047 3.866 -0.665 1.239 AA_DC3DA4:DT21DG22_BB 3 2.992 -6.181 27.737 1.689 2.030 3.289 37.985 A A 4 5 0.521 B B 21 20 3.288 0.339 0.145 0.304 AA_DA4DA5:DT20DT21_BB 4 -0.535 0.822 37.980 0.423 -0.292 3.188 36.328 A A 5 6 6.241 B B 20 19 3.246 3.882 0.460 -0.073 AA_DA5DA6:DT19DT20_BB 5 -2.260 3.634 36.058 -0.652 -1.050 3.299 31.215 A A 6 7 3.154 B B 19 18 3.332 1.696 0.005 -0.532 AA_DA6DT7:DA18DT19_BB 6 0.323 -0.601 31.168 -1.315 0.053 3.250 37.478 A A 7 8 7.787 B B 18 17 3.307 4.989 -0.354 -0.170 AA_DT7DT8:DA17DA18_BB 7 0.811 -1.266 37.148 -0.923 0.658 3.217 38.040 A A 8 9 -5.378 B B 17 16 3.252 -3.500 -0.396 0.051 AA_DT8DT9:DA16DA17_BB 8 1.530 -2.351 37.855 0.519 0.800 2.783 31.245 A A 9 10 -2.631 B B 16 15 2.966 -1.413 0.925 1.070 AA_DT9DG10:DC15DA16_BB 9 -3.854 7.176 30.981 2.224 -2.362 3.305 44.140 A A 10 11 -11.098 B B 15 14 3.458 -8.294 -1.138 0.758 AA_DG10DC11:DG14DC15_BB 10 -1.659 2.220 43.362 1.821 1.352 3.395 33.038 A A 11 12 16.107 B B 14 13 3.435 9.048 0.211 0.302 AA_DC11DG12:DC13DG14_BB 11 0.819 -1.458 31.798 -1.101 -0.223 database_PDB_rev database_PDB_rev_record exptl_crystal_grow pdbx_database_proc pdbx_database_status pdbx_seq_map_depositor_info struct_biol chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Data collection Experimental preparation Other Data collection Database references Derived calculations Other Refinement description 1 0 2013-01-16 1 1 2019-01-30 1 2 2023-12-20 _exptl_crystal_grow.method _exptl_crystal_grow.temp _pdbx_database_status.recvd_author_approval _pdbx_seq_map_depositor_info.one_letter_code_mod _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF THE DB 985-D(CGCAAATTTGCG)2 COMPLEX AT 1.20 A RESOLUTION CRYSTAL STRUCTURE OF THE DB 985-D(CGCGAATTCGCG)2 COMPLEX AT 1.25 A RESOLUTION. PDBE Y PDBE 2012-02-02 REL REL 1 B O HOH 2001 6.28 D2A 2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE MG MAGNESIUM ION HOH water 32630 SYNTHETIC CONSTRUCT sample 1S2R PDB ENTRY 1S2R PDB experimental model D2A 1013 2 D2A D2A 1013 A MG 2000 3 MG MG 2000 B HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B HOH 2013 4 HOH HOH 2013 B HOH 2014 4 HOH HOH 2014 B HOH 2015 4 HOH HOH 2015 B HOH 2016 4 HOH HOH 2016 B HOH 2017 4 HOH HOH 2017 B HOH 2018 4 HOH HOH 2018 B HOH 2019 4 HOH HOH 2019 B HOH 2020 4 HOH HOH 2020 B HOH 2021 4 HOH HOH 2021 B HOH 2022 4 HOH HOH 2022 B HOH 2023 4 HOH HOH 2023 B HOH 2024 4 HOH HOH 2024 B HOH 2025 4 HOH HOH 2025 B HOH 2026 4 HOH HOH 2026 B HOH 2027 4 HOH HOH 2027 B HOH 2028 4 HOH HOH 2028 B HOH 2029 4 HOH HOH 2029 B HOH 2030 4 HOH HOH 2030 B HOH 2031 4 HOH HOH 2031 B HOH 2032 4 HOH HOH 2032 B HOH 2033 4 HOH HOH 2033 B HOH 2034 4 HOH HOH 2034 B HOH 2035 4 HOH HOH 2035 B HOH 2036 4 HOH HOH 2036 B HOH 2037 4 HOH HOH 2037 B HOH 2038 4 HOH HOH 2038 B HOH 2039 4 HOH HOH 2039 B HOH 2040 4 HOH HOH 2040 B HOH 2042 4 HOH HOH 2042 B HOH 2043 4 HOH HOH 2043 B HOH 2044 4 HOH HOH 2044 B HOH 2045 4 HOH HOH 2045 B HOH 2047 4 HOH HOH 2047 B HOH 2048 4 HOH HOH 2048 B HOH 2049 4 HOH HOH 2049 B DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DC 3 n 3 DC 3 A DA 4 n 4 DA 4 A DA 5 n 5 DA 5 A DA 6 n 6 DA 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A DT 9 n 9 DT 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DC 13 n 1 DC 13 B DG 14 n 2 DG 14 B DC 15 n 3 DC 15 B DA 16 n 4 DA 16 B DA 17 n 5 DA 17 B DA 18 n 6 DA 18 B DT 19 n 7 DT 19 B DT 20 n 8 DT 20 B DT 21 n 9 DT 21 B DG 22 n 10 DG 22 B DC 23 n 11 DC 23 B DG 24 n 12 DG 24 B author_and_software_defined_assembly PISA 2 dimeric 1230 -9.2 5080 A HOH 2054 E O HOH 1_555 B MG 2000 D MG MG 1_555 A HOH 2055 E O HOH 1_555 89.3 A HOH 2054 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2014 F O HOH 1_555 95.4 A HOH 2055 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2014 F O HOH 1_555 91.7 A HOH 2054 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2047 F O HOH 1_555 84.8 A HOH 2055 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2047 F O HOH 1_555 85.7 B HOH 2014 F O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2047 F O HOH 1_555 177.4 A HOH 2054 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2048 F O HOH 1_555 88.2 A HOH 2055 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2048 F O HOH 1_555 177.2 B HOH 2014 F O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2048 F O HOH 1_555 89.8 B HOH 2047 F O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2048 F O HOH 1_555 92.8 A HOH 2054 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2049 F O HOH 1_555 172.2 A HOH 2055 E O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2049 F O HOH 1_555 92.1 B HOH 2014 F O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2049 F O HOH 1_555 92.3 B HOH 2047 F O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2049 F O HOH 1_555 87.6 B HOH 2048 F O HOH 1_555 B MG 2000 D MG MG 1_555 B HOH 2049 F O HOH 1_555 90.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A OP1 O DT HOH 8 2039 1.58 1 A A OP1 O DA HOH 5 2029 2.16 1 A A OP2 O DA HOH 4 2025 2.18 1 A DG 2 0.063 SIDE CHAIN 1 -4.52 0.40 121.90 117.38 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 3.94 0.50 117.40 121.34 A A A C4 C5 C6 DC DC DC 1 1 1 N 1 6.30 0.70 120.20 126.50 A A A C5 C4 N4 DC DC DC 1 1 1 N 1 9.09 1.40 114.30 123.39 A A A N9 C1' C2' DG DG DG 2 2 2 N 1 4.55 0.60 125.10 129.65 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 -3.64 0.60 123.90 120.26 A A A N1 C2 N3 DG DG DG 2 2 2 N 1 2.60 0.40 110.80 113.40 A A A C4 C5 N7 DG DG DG 2 2 2 N 1 -3.30 0.50 104.30 101.00 A A A C5 N7 C8 DG DG DG 2 2 2 N 1 3.32 0.50 113.10 116.42 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 4.25 0.60 119.90 124.15 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 -4.31 0.60 128.60 124.29 A A A C5 C6 O6 DG DG DG 2 2 2 N 1 -3.19 0.50 117.70 114.51 A A A C5 C6 N1 DA DA DA 4 4 4 N 1 3.20 0.50 113.80 117.00 A A A N7 C8 N9 DA DA DA 4 4 4 N 1 -2.64 0.40 105.80 103.16 A A A C8 N9 C4 DA DA DA 4 4 4 N 1 5.49 0.60 118.60 124.09 A A A N1 C6 N6 DA DA DA 4 4 4 N 1 17.40 1.50 119.60 137.00 A A A OP1 P OP2 DA DA DA 5 5 5 N 1 -8.13 0.90 105.70 97.57 A A A O5' P OP2 DA DA DA 5 5 5 N 1 -7.67 0.70 108.00 100.33 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -2.80 0.40 105.80 103.00 A A A C8 N9 C4 DA DA DA 5 5 5 N 1 3.24 0.50 117.00 120.24 A A A C4 C5 C6 DA DA DA 6 6 6 N 1 3.25 0.40 105.80 109.05 A A A N9 C4 C5 DA DA DA 6 6 6 N 1 -5.14 0.80 105.90 100.76 A A A O4' C1' C2' DT DT DT 7 7 7 N 1 14.12 1.50 119.60 133.72 A A A OP1 P OP2 DT DT DT 8 8 8 N 1 4.09 0.60 119.90 123.99 A A A N3 C4 O4 DT DT DT 9 9 9 N 1 2.11 0.30 108.30 110.41 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 3.79 0.50 113.10 116.89 A A A N7 C8 N9 DG DG DG 10 10 10 N 1 6.39 0.90 116.20 122.59 A A A N1 C2 N2 DG DG DG 10 10 10 N 1 -6.56 0.70 119.90 113.34 A A A N3 C2 N2 DG DG DG 10 10 10 N 1 -8.30 0.70 108.00 99.70 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 8.92 1.20 119.70 128.62 A A A C3' O3' P DC DC DG 11 11 12 Y 1 -9.70 1.60 120.90 111.20 A A A P O5' C5' DG DG DG 12 12 12 N 1 -6.03 0.40 104.50 98.47 A A A O4' C4' C3' DG DG DG 12 12 12 N 1 7.93 0.90 103.10 111.03 A A A C4' C3' C2' DG DG DG 12 12 12 N 1 -4.73 0.60 123.90 119.17 A A A N1 C2 N3 DG DG DG 12 12 12 N 1 -3.20 0.40 106.40 103.20 A A A C8 N9 C4 DG DG DG 12 12 12 N 1 6.38 0.90 116.20 122.58 A A A N1 C2 N2 DG DG DG 12 12 12 N 1 -5.32 0.70 108.00 102.68 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 3.77 0.50 119.90 123.67 B B B C2 N3 C4 DC DC DC 13 13 13 N 1 -3.74 0.40 121.90 118.16 B B B N3 C4 C5 DC DC DC 13 13 13 N 1 -4.34 0.60 118.90 114.56 B B B N1 C2 O2 DC DC DC 13 13 13 N 1 4.28 0.70 121.90 126.18 B B B N3 C2 O2 DC DC DC 15 15 15 N 1 4.79 0.70 120.20 124.99 B B B C5 C4 N4 DC DC DC 15 15 15 N 1 3.59 0.30 108.30 111.89 B B B O4' C1' N9 DA DA DA 16 16 16 N 1 4.44 0.60 118.60 123.04 B B B C6 N1 C2 DA DA DA 16 16 16 N 1 -4.04 0.50 103.90 99.86 B B B C5 N7 C8 DA DA DA 16 16 16 N 1 5.65 0.50 113.80 119.45 B B B N7 C8 N9 DA DA DA 16 16 16 N 1 -3.40 0.40 105.80 102.40 B B B C8 N9 C4 DA DA DA 16 16 16 N 1 12.53 1.50 119.60 132.13 B B B OP1 P OP2 DA DA DA 17 17 17 N 1 -3.70 0.40 104.50 100.80 B B B O4' C4' C3' DA DA DA 17 17 17 N 1 4.45 0.70 110.30 114.75 B B B C1' O4' C4' DA DA DA 17 17 17 N 1 3.69 0.60 106.00 109.69 B B B O4' C4' C3' DA DA DA 18 18 18 N 1 -4.71 0.70 108.00 103.29 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 3.17 0.50 129.30 132.47 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 -3.74 0.50 110.60 106.86 B B B C2 N3 C4 DA DA DA 18 18 18 N 1 -2.63 0.40 105.80 103.17 B B B C8 N9 C4 DA DA DA 18 18 18 N 1 -6.52 1.00 110.10 103.58 B B B C1' O4' C4' DT DT DT 19 19 19 N 1 5.26 0.70 124.90 130.16 B B B C5 C4 O4 DT DT DT 19 19 19 N 1 15.04 1.50 119.60 134.64 B B B OP1 P OP2 DT DT DT 20 20 20 N 1 -6.72 0.80 109.40 102.68 B B B O5' C5' C4' DT DT DT 20 20 20 N 1 -4.98 0.60 122.90 117.92 B B B C6 C5 C7 DT DT DT 20 20 20 N 1 -5.82 0.70 108.00 102.18 B B B O4' C1' N1 DT DT DT 21 21 21 N 1 -3.01 0.40 110.80 107.79 B B B C4 C5 N7 DG DG DG 22 22 22 N 1 11.81 1.50 119.60 131.41 B B B OP1 P OP2 DC DC DC 23 23 23 N 1 -10.17 0.90 105.70 95.53 B B B O5' P OP1 DC DC DC 23 23 23 N 1 2.26 0.30 108.30 110.56 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 14.31 1.50 119.60 133.91 B B B OP1 P OP2 DG DG DG 24 24 24 N 1 -8.78 0.90 105.70 96.92 B B B O5' P OP2 DG DG DG 24 24 24 N 1 4.02 0.50 106.80 110.82 B B B O4' C1' C2' DG DG DG 24 24 24 N 1 -4.41 0.60 123.90 119.49 B B B N1 C2 N3 DG DG DG 24 24 24 N 1 A A O3' C3' DG DG 2 2 -0.036 0.006 1.419 1.383 N 1 A A N3 C4 DC DC 3 3 -0.047 0.007 1.335 1.288 N 1 A A N9 C4 DA DA 4 4 0.040 0.006 1.374 1.414 N 1 A A O3' C3' DT DT 7 7 -0.082 0.006 1.419 1.337 N 1 A A C2 O2 DT DT 7 7 -0.061 0.008 1.220 1.159 N 1 A A P OP2 DT DT 8 8 -0.120 0.017 1.485 1.365 N 1 A A O3' C3' DT DT 8 8 -0.095 0.006 1.419 1.324 N 1 A A C5 C6 DT DT 8 8 -0.046 0.007 1.339 1.293 N 1 A A C2 O2 DT DT 8 8 -0.079 0.008 1.220 1.141 N 1 A A C4 O4 DT DT 8 8 -0.069 0.009 1.228 1.159 N 1 A A P OP1 DT DT 9 9 -0.112 0.017 1.485 1.373 N 1 A A P OP2 DT DT 9 9 -0.142 0.017 1.485 1.343 N 1 A A C6 N1 DT DT 9 9 -0.043 0.007 1.378 1.335 N 1 A A C2 O2 DT DT 9 9 -0.057 0.008 1.220 1.163 N 1 A A C4 O4 DT DT 9 9 -0.061 0.009 1.228 1.167 N 1 A A N3 C4 DC DC 11 11 0.048 0.007 1.335 1.383 N 1 A A C2 N3 DG DG 12 12 0.062 0.008 1.323 1.385 N 1 A A C5 N7 DG DG 12 12 -0.037 0.006 1.388 1.351 N 1 B B P O5' DA DA 16 16 -0.068 0.010 1.593 1.525 N 1 B B O3' C3' DA DA 16 16 -0.044 0.006 1.419 1.375 N 1 B B P O5' DA DA 17 17 0.060 0.010 1.593 1.653 N 1 B B O3' C3' DA DA 17 17 -0.084 0.006 1.419 1.335 N 1 B B P OP2 DT DT 21 21 -0.112 0.017 1.485 1.373 N 1 B B C4 O4 DT DT 21 21 -0.066 0.009 1.228 1.162 N 1 B B O3' C3' DG DG 22 22 -0.093 0.006 1.419 1.326 N 1 B B N1 C2 DG DG 22 22 -0.050 0.008 1.373 1.323 N 1 B B C8 N9 DG DG 22 22 -0.044 0.007 1.374 1.330 N 1 B B O3' P DG DC 22 23 -0.074 0.012 1.607 1.533 Y 1 B B C2 O2 DC DC 23 23 -0.060 0.009 1.240 1.180 N 1 B B N1 C6 DC DC 23 23 -0.037 0.006 1.367 1.330 N 1 B B C2 N3 DC DC 23 23 -0.052 0.008 1.353 1.301 N 1 B B N3 C4 DC DC 23 23 -0.055 0.007 1.335 1.280 N 1 B B C5 C6 DC DC 23 23 -0.053 0.008 1.339 1.286 N 16.275 -0.02 0.00 0.00 -0.05 0.00 0.07 0.972 0.949 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY 0.25036 0.18410 0.18718 1.42 33.04 520 10451 4.7 95.88 1.641 0.064 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.076 0.090 0.80 0.80 1.40 PDB ENTRY 1S2R MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.42 33.04 109 623 28 486 0 0.025 0.021 574 0.014 0.020 238 3.408 2.986 879 1.448 3.030 579 0.142 0.200 94 0.031 0.020 287 0.001 0.021 57 2.381 3.000 574 3.283 4.500 879 0.359 0.272 1.457 37 784 20 98.80 0 1.42 38.88 4AH1 11003 0.0 0.05 1 13.80 4.40 96.6 0.47 1.42 1.50 2.80 1 4.4 98.2 refinement REFMAC 5.5.0110 data reduction MOSFLM data scaling SCALA phasing PHASER CRYSTAL STRUCTURE OF THE DB 921-D(CGCAAATTTGCG)2 COMPLEX AT 1.42 A RESOLUTION 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N metalc 2.075 A HOH 2054 E O HOH 1_555 B MG 2000 D MG MG 1_555 metalc 2.074 A HOH 2055 E O HOH 1_555 B MG 2000 D MG MG 1_555 metalc 1.995 B MG 2000 D MG MG 1_555 B HOH 2014 F O HOH 1_555 metalc 2.172 B MG 2000 D MG MG 1_555 B HOH 2047 F O HOH 1_555 metalc 2.117 B MG 2000 D MG MG 1_555 B HOH 2048 F O HOH 1_555 metalc 2.082 B MG 2000 D MG MG 1_555 B HOH 2049 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 21 B N3 DT 9 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 21 B O4 DT 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 B DA 16 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 B DA 16 B N6 DA 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA DNA, DNA DOUBLE HELIX, MINOR GROOVE, DODECAMER, A3T3, DNA-DRUG COMPLEX, DNA HYDRATION 4AH1 PDB 1 4AH1 1 12 4AH1 1 12 4AH1 A 1 1 12 13 24 4AH1 13 24 4AH1 B 1 1 12 BINDING SITE FOR RESIDUE D2A A 1013 A D2A 1013 Software 13 BINDING SITE FOR RESIDUE MG B 2000 B MG 2000 Software 6 A DA 6 A DA 6 13 1_555 A DT 7 A DT 7 13 1_555 A DT 8 A DT 8 13 1_555 A DT 9 A DT 9 13 1_555 A HOH 2035 E HOH 13 4_455 A HOH 2046 E HOH 13 1_555 A HOH 2062 E HOH 13 1_555 A HOH 2063 E HOH 13 1_555 B DA 18 B DA 6 13 1_555 B DT 19 B DT 7 13 1_555 B DT 20 B DT 8 13 1_555 B DT 21 B DT 9 13 1_555 B DG 22 B DG 10 13 1_555 A HOH 2054 E HOH 6 1_555 A HOH 2055 E HOH 6 1_555 B HOH 2014 F HOH 6 1_555 B HOH 2047 F HOH 6 1_555 B HOH 2048 F HOH 6 1_555 B HOH 2049 F HOH 6 1_555 19 P 21 21 21