0.026323 0.000000 0.007588 0.000000 0.019399 0.000000 0.000000 0.000000 0.020555 0.00000 0.00000 0.00000 Schmelz, S. Wisand, U. Stenta, M. Muenich, S. Widow, U. Cornelis, G.R. Heinz, D.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 106.08 90.00 37.990 51.550 50.630 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N P N 274 N O N 275 N O N 276 N O N 277 N O N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N O N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US Elife 2050-084X 2 00792 10.7554/ELIFE.00792 23908767 In Situ Structural Analysis of the Yersinia Enterocolitica Injectisome. 2013 10.2210/pdb4alz/pdb pdb_00004alz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-06-16 MARMOSAIC 225 mm CCD KMC-1 SINGLE WAVELENGTH M x-ray 1 0.91841 1.0 14.1 BESSY 0.91841 SYNCHROTRON BESSY BEAMLINE 14.1 22554.447 YOP PROTEINS TRANSLOCATION PROTEIN D PERIPLASMATIC DOMAIN, RESIDUES 150-347 YES 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 289 nat water TYPE III SECRETION APPARATUS PROTEIN YSCD no no NQDGQLVEQEVRRLLATAAYKDVVLTSPKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQR LGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVENKVRIAPNQRKRLDALLEQFGLDSDFTVNVKGE LIELRGQVNDEKLSSFNQLQQTFRQEFGNRPKLELVNV NQDGQLVEQEVRRLLATAAYKDVVLTSPKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQR LGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVENKVRIAPNQRKRLDALLEQFGLDSDFTVNVKGE LIELRGQVNDEKLSSFNQLQQTFRQEFGNRPKLELVNV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n E40 sample 630 YERSINIA ENTEROCOLITICA 469008 ESCHERICHIA COLI BL21(DE3) TUNER PGEX-6P-1 PLASMID 1 2.12 42 ANOMALOUS SIGNAL OF IODINE WAS USED TO OBTAIN EXPERIMENTAL PHASES. INITIAL PHASES WERE OBTAINED BY QUICK-SOAKING YSCD150-362 WT CRYSTALS WITH 0.5M KI AND COLLECTING OF AN ANOMALOUS DATASET USING THE CU KALPHA RADIATION OF A RIGAKU MICROMAX 7HF AND SATURN 944+ DETECTOR. FOR DATA PROCESSING XDS/XSCALE WAS USED. TO SOLVE THE WT STRUCTURE SAS AND MRSAD PROTOCOL OF AUTO-RICKSHAW WAS USED.AN INITIAL MODEL FROM AA 152-346 WAS BUILD BY ARP/WARP WHICH WAS USED AS AN MR MODEL FOR A WT DATASET(NON- ANOMALOUS). THE WT DATA SET WAS REFINED AND COMPLETED WITH REFMARC5 AND COOT, BUT STATISTICS WERE NOT SUFFICIENT FOR PUBLICATION. HENCE THE G283P MUTANT WAS GENERATED. FIRST TWO DOMAINS (AMINO ACIDS 150-280) OF WT MODEL WERE USED AS A MR MODEL FOR YSCD150-347 G283P. REMAINING DOMAIN WAS MANUALLY BUILD WITH COOT. VAPOR DIFFUSION, HANGING DROP YSCD150-347 G283P CRYSTALS GREW FROM EQUAL VOLUMES OF PROTEIN (5.8 MG/ML IN 20 MM HEPES PH 7.0, 60 MM NACL) WITH PRECIPITANT SOLUTION (0.15 M NAH2PO4, 20 % (W/V) PEG 3350, 60 MM NACL) IN HANGING-DROP VAPOR-DIFFUSION CRYSTALLIZATION TRAYS AT 292 K (EASYXTAL; QIAGEN). 292 exptl_crystal_grow pdbx_database_proc pdbx_database_status exptl_crystal_grow chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_site repository Initial release Database references Data collection Experimental preparation Other Data collection Experimental preparation Data collection Database references Derived calculations Other 1 0 2013-04-24 1 1 2013-11-13 1 2 2019-05-08 1 3 2019-05-15 1 4 2024-05-08 _exptl_crystal_grow.temp _pdbx_database_status.recvd_author_approval _exptl_crystal_grow.method _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBE Y PDBE 2012-03-06 REL REL PO4 PHOSPHATE ION GOL GLYCEROL HOH water ENGINEERED RESIDUE IN CHAIN A, GLY 283 TO PRO PO4 1199 2 PO4 PO4 1199 A GOL 1200 3 GOL GOL 1200 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2108 4 HOH HOH 2108 A HOH 2109 4 HOH HOH 2109 A HOH 2110 4 HOH HOH 2110 A HOH 2111 4 HOH HOH 2111 A HOH 2112 4 HOH HOH 2112 A HOH 2113 4 HOH HOH 2113 A HOH 2114 4 HOH HOH 2114 A HOH 2115 4 HOH HOH 2115 A HOH 2116 4 HOH HOH 2116 A HOH 2117 4 HOH HOH 2117 A HOH 2118 4 HOH HOH 2118 A HOH 2119 4 HOH HOH 2119 A HOH 2120 4 HOH HOH 2120 A HOH 2121 4 HOH HOH 2121 A HOH 2122 4 HOH HOH 2122 A HOH 2123 4 HOH HOH 2123 A HOH 2124 4 HOH HOH 2124 A HOH 2125 4 HOH HOH 2125 A HOH 2126 4 HOH HOH 2126 A HOH 2127 4 HOH HOH 2127 A HOH 2128 4 HOH HOH 2128 A HOH 2129 4 HOH HOH 2129 A HOH 2130 4 HOH HOH 2130 A HOH 2131 4 HOH HOH 2131 A HOH 2132 4 HOH HOH 2132 A HOH 2133 4 HOH HOH 2133 A HOH 2134 4 HOH HOH 2134 A HOH 2135 4 HOH HOH 2135 A HOH 2136 4 HOH HOH 2136 A HOH 2137 4 HOH HOH 2137 A HOH 2138 4 HOH HOH 2138 A HOH 2139 4 HOH HOH 2139 A HOH 2140 4 HOH HOH 2140 A HOH 2141 4 HOH HOH 2141 A HOH 2142 4 HOH HOH 2142 A HOH 2143 4 HOH HOH 2143 A HOH 2144 4 HOH HOH 2144 A HOH 2145 4 HOH HOH 2145 A HOH 2146 4 HOH HOH 2146 A HOH 2147 4 HOH HOH 2147 A HOH 2148 4 HOH HOH 2148 A HOH 2149 4 HOH HOH 2149 A HOH 2150 4 HOH HOH 2150 A HOH 2151 4 HOH HOH 2151 A HOH 2152 4 HOH HOH 2152 A HOH 2153 4 HOH HOH 2153 A HOH 2154 4 HOH HOH 2154 A HOH 2155 4 HOH HOH 2155 A HOH 2156 4 HOH HOH 2156 A HOH 2157 4 HOH HOH 2157 A HOH 2158 4 HOH HOH 2158 A HOH 2159 4 HOH HOH 2159 A HOH 2160 4 HOH HOH 2160 A HOH 2161 4 HOH HOH 2161 A HOH 2162 4 HOH HOH 2162 A HOH 2163 4 HOH HOH 2163 A HOH 2164 4 HOH HOH 2164 A HOH 2165 4 HOH HOH 2165 A HOH 2166 4 HOH HOH 2166 A HOH 2167 4 HOH HOH 2167 A HOH 2168 4 HOH HOH 2168 A HOH 2169 4 HOH HOH 2169 A HOH 2170 4 HOH HOH 2170 A HOH 2171 4 HOH HOH 2171 A HOH 2172 4 HOH HOH 2172 A HOH 2173 4 HOH HOH 2173 A HOH 2174 4 HOH HOH 2174 A HOH 2175 4 HOH HOH 2175 A HOH 2176 4 HOH HOH 2176 A HOH 2177 4 HOH HOH 2177 A HOH 2178 4 HOH HOH 2178 A HOH 2179 4 HOH HOH 2179 A HOH 2180 4 HOH HOH 2180 A HOH 2181 4 HOH HOH 2181 A HOH 2182 4 HOH HOH 2182 A HOH 2183 4 HOH HOH 2183 A HOH 2184 4 HOH HOH 2184 A HOH 2185 4 HOH HOH 2185 A HOH 2186 4 HOH HOH 2186 A HOH 2187 4 HOH HOH 2187 A HOH 2188 4 HOH HOH 2188 A HOH 2189 4 HOH HOH 2189 A HOH 2190 4 HOH HOH 2190 A HOH 2191 4 HOH HOH 2191 A HOH 2192 4 HOH HOH 2192 A HOH 2193 4 HOH HOH 2193 A HOH 2194 4 HOH HOH 2194 A HOH 2195 4 HOH HOH 2195 A HOH 2196 4 HOH HOH 2196 A HOH 2197 4 HOH HOH 2197 A HOH 2198 4 HOH HOH 2198 A HOH 2199 4 HOH HOH 2199 A HOH 2200 4 HOH HOH 2200 A HOH 2201 4 HOH HOH 2201 A HOH 2202 4 HOH HOH 2202 A HOH 2203 4 HOH HOH 2203 A HOH 2204 4 HOH HOH 2204 A HOH 2205 4 HOH HOH 2205 A HOH 2206 4 HOH HOH 2206 A HOH 2207 4 HOH HOH 2207 A HOH 2208 4 HOH HOH 2208 A HOH 2209 4 HOH HOH 2209 A HOH 2210 4 HOH HOH 2210 A HOH 2211 4 HOH HOH 2211 A HOH 2212 4 HOH HOH 2212 A HOH 2213 4 HOH HOH 2213 A HOH 2214 4 HOH HOH 2214 A HOH 2215 4 HOH HOH 2215 A HOH 2216 4 HOH HOH 2216 A HOH 2217 4 HOH HOH 2217 A HOH 2218 4 HOH HOH 2218 A HOH 2219 4 HOH HOH 2219 A HOH 2220 4 HOH HOH 2220 A HOH 2221 4 HOH HOH 2221 A HOH 2222 4 HOH HOH 2222 A HOH 2223 4 HOH HOH 2223 A HOH 2224 4 HOH HOH 2224 A HOH 2225 4 HOH HOH 2225 A HOH 2226 4 HOH HOH 2226 A HOH 2227 4 HOH HOH 2227 A HOH 2228 4 HOH HOH 2228 A HOH 2229 4 HOH HOH 2229 A HOH 2230 4 HOH HOH 2230 A HOH 2231 4 HOH HOH 2231 A HOH 2232 4 HOH HOH 2232 A HOH 2233 4 HOH HOH 2233 A HOH 2234 4 HOH HOH 2234 A HOH 2235 4 HOH HOH 2235 A HOH 2236 4 HOH HOH 2236 A HOH 2237 4 HOH HOH 2237 A HOH 2238 4 HOH HOH 2238 A HOH 2239 4 HOH HOH 2239 A HOH 2240 4 HOH HOH 2240 A HOH 2241 4 HOH HOH 2241 A HOH 2242 4 HOH HOH 2242 A HOH 2243 4 HOH HOH 2243 A HOH 2244 4 HOH HOH 2244 A HOH 2245 4 HOH HOH 2245 A HOH 2246 4 HOH HOH 2246 A HOH 2247 4 HOH HOH 2247 A HOH 2248 4 HOH HOH 2248 A HOH 2249 4 HOH HOH 2249 A HOH 2250 4 HOH HOH 2250 A HOH 2251 4 HOH HOH 2251 A HOH 2252 4 HOH HOH 2252 A HOH 2253 4 HOH HOH 2253 A HOH 2254 4 HOH HOH 2254 A HOH 2255 4 HOH HOH 2255 A HOH 2256 4 HOH HOH 2256 A HOH 2257 4 HOH HOH 2257 A HOH 2258 4 HOH HOH 2258 A HOH 2259 4 HOH HOH 2259 A HOH 2260 4 HOH HOH 2260 A HOH 2261 4 HOH HOH 2261 A HOH 2262 4 HOH HOH 2262 A HOH 2263 4 HOH HOH 2263 A HOH 2264 4 HOH HOH 2264 A HOH 2265 4 HOH HOH 2265 A HOH 2266 4 HOH HOH 2266 A HOH 2267 4 HOH HOH 2267 A HOH 2268 4 HOH HOH 2268 A HOH 2269 4 HOH HOH 2269 A HOH 2270 4 HOH HOH 2270 A HOH 2271 4 HOH HOH 2271 A HOH 2272 4 HOH HOH 2272 A HOH 2273 4 HOH HOH 2273 A HOH 2274 4 HOH HOH 2274 A HOH 2275 4 HOH HOH 2275 A HOH 2276 4 HOH HOH 2276 A HOH 2277 4 HOH HOH 2277 A HOH 2278 4 HOH HOH 2278 A HOH 2279 4 HOH HOH 2279 A HOH 2280 4 HOH HOH 2280 A HOH 2281 4 HOH HOH 2281 A HOH 2282 4 HOH HOH 2282 A HOH 2283 4 HOH HOH 2283 A HOH 2284 4 HOH HOH 2284 A HOH 2285 4 HOH HOH 2285 A HOH 2286 4 HOH HOH 2286 A HOH 2287 4 HOH HOH 2287 A HOH 2288 4 HOH HOH 2288 A HOH 2289 4 HOH HOH 2289 A n 1 150 A n 2 151 A n 3 152 A n 4 153 A GLN 154 n 5 GLN 154 A LEU 155 n 6 LEU 155 A VAL 156 n 7 VAL 156 A GLU 157 n 8 GLU 157 A GLN 158 n 9 GLN 158 A GLU 159 n 10 GLU 159 A VAL 160 n 11 VAL 160 A ARG 161 n 12 ARG 161 A ARG 162 n 13 ARG 162 A LEU 163 n 14 LEU 163 A LEU 164 n 15 LEU 164 A ALA 165 n 16 ALA 165 A THR 166 n 17 THR 166 A ALA 167 n 18 ALA 167 A ALA 168 n 19 ALA 168 A TYR 169 n 20 TYR 169 A LYS 170 n 21 LYS 170 A ASP 171 n 22 ASP 171 A VAL 172 n 23 VAL 172 A VAL 173 n 24 VAL 173 A LEU 174 n 25 LEU 174 A THR 175 n 26 THR 175 A SER 176 n 27 SER 176 A PRO 177 n 28 PRO 177 A LYS 178 n 29 LYS 178 A GLU 179 n 30 GLU 179 A GLY 180 n 31 GLY 180 A GLU 181 n 32 GLU 181 A PRO 182 n 33 PRO 182 A TRP 183 n 34 TRP 183 A LEU 184 n 35 LEU 184 A LEU 185 n 36 LEU 185 A THR 186 n 37 THR 186 A GLY 187 n 38 GLY 187 A TYR 188 n 39 TYR 188 A ILE 189 n 40 ILE 189 A GLN 190 n 41 GLN 190 A ASP 191 n 42 ASP 191 A ASN 192 n 43 ASN 192 A HIS 193 n 44 HIS 193 A ALA 194 n 45 ALA 194 A ARG 195 n 46 ARG 195 A LEU 196 n 47 LEU 196 A SER 197 n 48 SER 197 A LEU 198 n 49 LEU 198 A GLN 199 n 50 GLN 199 A ASN 200 n 51 ASN 200 A PHE 201 n 52 PHE 201 A LEU 202 n 53 LEU 202 A GLU 203 n 54 GLU 203 A SER 204 n 55 SER 204 A HIS 205 n 56 HIS 205 A GLY 206 n 57 GLY 206 A ILE 207 n 58 ILE 207 A PRO 208 n 59 PRO 208 A PHE 209 n 60 PHE 209 A ARG 210 n 61 ARG 210 A LEU 211 n 62 LEU 211 A GLU 212 n 63 GLU 212 A LEU 213 n 64 LEU 213 A ARG 214 n 65 ARG 214 A SER 215 n 66 SER 215 A MET 216 n 67 MET 216 A GLU 217 n 68 GLU 217 A GLU 218 n 69 GLU 218 A LEU 219 n 70 LEU 219 A ARG 220 n 71 ARG 220 A GLN 221 n 72 GLN 221 A GLY 222 n 73 GLY 222 A ALA 223 n 74 ALA 223 A GLU 224 n 75 GLU 224 A PHE 225 n 76 PHE 225 A ILE 226 n 77 ILE 226 A LEU 227 n 78 LEU 227 A GLN 228 n 79 GLN 228 A ARG 229 n 80 ARG 229 A LEU 230 n 81 LEU 230 A GLY 231 n 82 GLY 231 A TYR 232 n 83 TYR 232 A HIS 233 n 84 HIS 233 A GLY 234 n 85 GLY 234 A ILE 235 n 86 ILE 235 A GLU 236 n 87 GLU 236 A VAL 237 n 88 VAL 237 A SER 238 n 89 SER 238 A LEU 239 n 90 LEU 239 A ALA 240 n 91 ALA 240 A PRO 241 n 92 PRO 241 A GLN 242 n 93 GLN 242 A ALA 243 n 94 ALA 243 A GLY 244 n 95 GLY 244 A TRP 245 n 96 TRP 245 A LEU 246 n 97 LEU 246 A GLN 247 n 98 GLN 247 A LEU 248 n 99 LEU 248 A ASN 249 n 100 ASN 249 A GLY 250 n 101 GLY 250 A GLU 251 n 102 GLU 251 A VAL 252 n 103 VAL 252 A SER 253 n 104 SER 253 A GLU 254 n 105 GLU 254 A GLU 255 n 106 GLU 255 A ILE 256 n 107 ILE 256 A GLN 257 n 108 GLN 257 A LYS 258 n 109 LYS 258 A GLN 259 n 110 GLN 259 A LYS 260 n 111 LYS 260 A ILE 261 n 112 ILE 261 A ASP 262 n 113 ASP 262 A SER 263 n 114 SER 263 A LEU 264 n 115 LEU 264 A LEU 265 n 116 LEU 265 A GLN 266 n 117 GLN 266 A ALA 267 n 118 ALA 267 A GLU 268 n 119 GLU 268 A VAL 269 n 120 VAL 269 A PRO 270 n 121 PRO 270 A GLY 271 n 122 GLY 271 A LEU 272 n 123 LEU 272 A LEU 273 n 124 LEU 273 A GLY 274 n 125 GLY 274 A VAL 275 n 126 VAL 275 A GLU 276 n 127 GLU 276 A ASN 277 n 128 ASN 277 A LYS 278 n 129 LYS 278 A VAL 279 n 130 VAL 279 A ARG 280 n 131 ARG 280 A ILE 281 n 132 ILE 281 A ALA 282 n 133 ALA 282 A PRO 283 n 134 PRO 283 A ASN 284 n 135 ASN 284 A GLN 285 n 136 GLN 285 A ARG 286 n 137 ARG 286 A LYS 287 n 138 LYS 287 A ARG 288 n 139 ARG 288 A LEU 289 n 140 LEU 289 A ASP 290 n 141 ASP 290 A ALA 291 n 142 ALA 291 A LEU 292 n 143 LEU 292 A LEU 293 n 144 LEU 293 A GLU 294 n 145 GLU 294 A GLN 295 n 146 GLN 295 A PHE 296 n 147 PHE 296 A GLY 297 n 148 GLY 297 A LEU 298 n 149 LEU 298 A ASP 299 n 150 ASP 299 A SER 300 n 151 SER 300 A ASP 301 n 152 ASP 301 A PHE 302 n 153 PHE 302 A THR 303 n 154 THR 303 A VAL 304 n 155 VAL 304 A ASN 305 n 156 ASN 305 A VAL 306 n 157 VAL 306 A LYS 307 n 158 LYS 307 A GLY 308 n 159 GLY 308 A GLU 309 n 160 GLU 309 A LEU 310 n 161 LEU 310 A ILE 311 n 162 ILE 311 A GLU 312 n 163 GLU 312 A LEU 313 n 164 LEU 313 A ARG 314 n 165 ARG 314 A GLY 315 n 166 GLY 315 A GLN 316 n 167 GLN 316 A VAL 317 n 168 VAL 317 A ASN 318 n 169 ASN 318 A ASP 319 n 170 ASP 319 A GLU 320 n 171 GLU 320 A LYS 321 n 172 LYS 321 A LEU 322 n 173 LEU 322 A SER 323 n 174 SER 323 A SER 324 n 175 SER 324 A PHE 325 n 176 PHE 325 A ASN 326 n 177 ASN 326 A GLN 327 n 178 GLN 327 A LEU 328 n 179 LEU 328 A GLN 329 n 180 GLN 329 A GLN 330 n 181 GLN 330 A THR 331 n 182 THR 331 A PHE 332 n 183 PHE 332 A ARG 333 n 184 ARG 333 A GLN 334 n 185 GLN 334 A GLU 335 n 186 GLU 335 A PHE 336 n 187 PHE 336 A GLY 337 n 188 GLY 337 A ASN 338 n 189 ASN 338 A ARG 339 n 190 ARG 339 A PRO 340 n 191 PRO 340 A LYS 341 n 192 LYS 341 A LEU 342 n 193 LEU 342 A GLU 343 n 194 GLU 343 A LEU 344 n 195 LEU 344 A VAL 345 n 196 VAL 345 A ASN 346 n 197 ASN 346 A VAL 347 n 198 VAL 347 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 175 A N THR 26 A O LEU 184 A O LEU 35 A N LEU 185 A N LEU 36 A O ARG 210 A O ARG 61 A N SER 238 A N SER 89 A O GLN 247 A O GLN 98 A N GLU 276 A N GLU 127 A O LEU 246 A O LEU 97 A N ARG 280 A N ARG 131 A O GLY 250 A O GLY 101 A N LYS 307 A N LYS 158 A O LEU 310 A O LEU 161 A N ILE 311 A N ILE 162 A O LYS 341 A O LYS 192 1 A ASN 150 A ASN 1 1 Y 1 A GLN 151 A GLN 2 1 Y 1 A ASP 152 A ASP 3 1 Y 1 A GLY 153 A GLY 4 1 Y 1 A A OE1 O GLN HOH 329 2258 2.05 B 1 A A O O HOH HOH 2024 2056 2.13 1 A A O O HOH HOH 2071 2168 2.18 1 A A OE2 O GLU HOH 254 2157 2.18 1 -3.51 0.50 120.30 116.79 A A A NE CZ NH2 ARG ARG ARG 288 288 288 N -0.7547 0.0000 -0.4714 2.7898 0.0000 -2.0351 0.2258 0.1894 0.1912 1.40 29.791 1847 36927 5.0 99.55 0.21 1 1.99 OTHER 20.98 0.98 1.20 NONE ML FLAT BULK SOLVENT MODEL 34.945 0.311 1.40 29.791 289 1862 11 0 1562 0.009 1744 1.238 2377 15.041 691 0.082 258 0.006 324 0.3590 0.2865 1.4379 142 2689 100.00 0.3084 0.2533 1.4802 141 2680 100.00 0.2416 0.2200 1.5280 143 2727 100.00 0.2331 0.1938 1.5826 141 2684 100.00 0.2445 0.2012 1.6460 143 2701 100.00 0.2354 0.1944 1.7209 141 2688 100.00 0.2103 0.1819 1.8116 142 2702 100.00 0.2341 0.2047 1.9251 140 2652 98.00 0.2211 0.1960 2.0737 140 2669 99.00 0.2330 0.1943 2.2823 142 2682 99.00 0.1968 0.1837 2.6124 142 2712 100.00 0.2324 0.1775 3.2907 143 2719 100.00 0.2086 0.1712 29.7973 147 2775 99.00 13.94 1.40 29.80 4ALZ 36930 2.0 0.04 1 21.00 3.7 95.5 0.55 1.40 1.48 2.30 1 3.5 99.7 refinement PHENIX (PHENIX.REFINE) data reduction XDS data scaling XSCALE phasing Auto-Rickshaw The Yersinia T3SS basal body component YscD reveals a different structural periplasmatic domain organization to known homologue PrgH 1 N N 2 N N 3 N N 4 N N A GLN 154 A GLN 5 HELX_P A ALA 165 A ALA 16 1 1 12 A THR 166 A THR 17 HELX_P A LYS 170 A LYS 21 5 2 5 A ASP 191 A ASP 42 HELX_P A HIS 205 A HIS 56 1 3 15 A MET 216 A MET 67 HELX_P A LEU 230 A LEU 81 1 4 15 A SER 253 A SER 104 HELX_P A LYS 258 A LYS 109 1 5 6 A LYS 260 A LYS 111 HELX_P A VAL 269 A VAL 120 1 6 10 A ASN 284 A ASN 135 HELX_P A PHE 296 A PHE 147 1 7 13 A ASN 318 A ASN 169 HELX_P A GLY 337 A GLY 188 1 8 20 MEMBRANE PROTEIN MEMBRANE PROTEIN, T3SS, TYPE 3 SECRETION, EFFECTOR TRANSPORT A ARG 339 A ARG 190 1 A PRO 340 A PRO 191 -7.90 YSCD_YEREN UNP 1 Q01245 150 347 4ALZ 150 347 Q01245 A 1 1 198 1 GLY engineered mutation PRO 283 4ALZ A Q01245 UNP 283 134 3 2 2 2 3 anti-parallel parallel anti-parallel parallel parallel anti-parallel parallel A VAL 172 A VAL 23 A THR 175 A THR 26 A TRP 183 A TRP 34 A ILE 189 A ILE 40 A PHE 209 A PHE 60 A SER 215 A SER 66 A ILE 235 A ILE 86 A LEU 239 A LEU 90 A TRP 245 A TRP 96 A VAL 252 A VAL 103 A GLY 274 A GLY 125 A ASN 277 A ASN 128 A TRP 245 A TRP 96 A VAL 252 A VAL 103 A ARG 280 A ARG 131 A ILE 281 A ILE 132 A TRP 245 A TRP 96 A VAL 252 A VAL 103 A THR 303 A THR 154 A LYS 307 A LYS 158 A LEU 310 A LEU 161 A GLY 315 A GLY 166 A LYS 341 A LYS 192 A ASN 346 A ASN 197 BINDING SITE FOR RESIDUE PO4 A 1199 A PO4 1199 Software 10 BINDING SITE FOR RESIDUE GOL A 1200 A GOL 1200 Software 7 A ASP 191 A ASP 42 10 1_555 A ASN 192 A ASN 43 10 1_555 A SER 215 A SER 66 10 1_555 A GLU 217 A GLU 68 10 1_555 A GLU 218 A GLU 69 10 1_555 A THR 331 A THR 182 10 1_554 A HOH 2068 D HOH 10 1_555 A HOH 2115 D HOH 10 1_555 A HOH 2287 D HOH 10 1_555 A HOH 2288 D HOH 10 1_555 A GLN 316 A GLN 167 7 1_555 A VAL 317 A VAL 168 7 1_555 A ASN 346 A ASN 197 7 1_555 A VAL 347 A VAL 198 7 1_555 A HOH 2165 D HOH 7 1_656 A HOH 2166 D HOH 7 1_656 A HOH 2243 D HOH 7 1_555 4 P 1 21 1