0.029091
0.000000
0.000000
0.000000
0.028423
0.000000
0.000000
0.000000
0.022730
0.00000
0.00000
0.00000
Cuypers, M.G.
Mason, S.A.
Blakeley, M.P.
Mitchell, E.P.
Haertlein, M.
Forsyth, V.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
34.375
35.183
43.994
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
D3 O 1
22.042
trideuteriooxidanium
perdeuterated oxonium
non-polymer
D 1
2.014
deuterium(1+)
non-polymer
D2 O
20.028
DEUTERATED WATER
non-polymer
Fe 3
55.845
FE (III) ION
non-polymer
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
R
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
S
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
O
N
62
N
D
N
63
N
D
N
64
N
D
N
65
N
D
N
66
N
O
N
67
N
D
N
68
N
D
N
69
N
FE
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
C
N
77
N
O
N
78
N
O
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
S
C
N
104
N
C
N
105
N
C
N
106
N
C
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
S
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
C
N
174
N
S
N
175
N
C
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
Y
193
N
C
Y
194
N
C
Y
195
N
C
Y
196
N
C
Y
197
N
C
Y
198
N
C
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
R
C
N
247
N
O
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
N
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
doub
Y
186
N
sing
Y
187
N
sing
N
188
N
sing
Y
189
N
doub
N
190
N
sing
Y
191
N
doub
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
doub
Y
255
N
sing
Y
256
N
sing
N
257
N
sing
Y
258
N
doub
Y
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
Y
282
N
doub
Y
283
N
sing
Y
284
N
sing
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
GE
Angew.Chem.Int.Ed.Engl.
ACIEAY
0179
1521-3773
52
1022
10.1002/ANIE.201207071
23225503
Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes.
2013
10.2210/pdb4ar4/pdb
pdb_00004ar4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
BORON CARBIDE BEAM DEFINING APERTURES
5ATM 3HE, CURVED 120X30 DEGREES
INSTITUT LAUE LANGEVIN DETECTOR GROUP
PYROLYTIC GRAPHITE (002)
neutron
1
2.42
1.0
D19
ILL
2.42
NUCLEAR REACTOR
ILL BEAMLINE D19
REDUCED STATE (FE II), HYDRONIUM IONS, CARBOXYLIC DEUTERONS
6031.728
Rubredoxin
1
man
polymer
55.845
FE (III) ION
1
syn
non-polymer
2.014
deuterium(1+)
2
syn
non-polymer
22.042
trideuteriooxidanium
4
syn
non-polymer
18.015
water
104
nat
water
Rd
no
no
MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED
MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1
sample
1
54
rub, PF1282
186497
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
562
Escherichia coli
pET28A
PLASMID
Biological sequence
1
1.46
15.08
NONE
6.2
pH 6.2
reflns
chem_comp
citation
entity
entity_name_com
entity_src_gen
pdbx_database_status
pdbx_struct_assembly_prop
pdbx_struct_conn_angle
struct_conn
struct_ref
struct_site
database_2
chem_comp_atom
chem_comp_bond
repository
Initial release
Database references
Atomic model
Atomic model
Data collection
Structure summary
Data collection
Database references
Derived calculations
Non-polymer description
Other
Source and taxonomy
Structure summary
Database references
Data collection
1
0
2013-01-16
1
1
2013-03-06
1
2
2013-08-14
1
3
2017-03-22
1
4
2019-08-28
2
0
2021-06-09
2
1
2023-05-03
2
2
2024-06-19
_reflns.pdbx_Rrim_I_all
_reflns.pdbx_Rsym_value
_reflns.pdbx_netI_over_sigmaI
_chem_comp.formula
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_entity.pdbx_description
_entity_name_com.name
_entity_src_gen.gene_src_strain
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_vector
_entity_src_gen.pdbx_seq_type
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RUBREDOXIN (METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS
RUBREDOXIN (FORMYL METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS
RUBREDOXIN (WILD TYPE) FROM PYROCOCCUS FURIOSUS
RUBREDOXIN (OXIDIZED)
RUBREDOXIN (REDUCED)
X-RAY CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROMPYROCOCCUS FURIOSUS
NEUTRON CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROMPYROCOCCUS FURIOSUS
RUBREDOXIN VARIANT (PFRD-XC4) FOLDS WITHOUT IRON
BACKBONE NMR STRUCTURE OF A MUTANT P. FURIOSUS RUBREDOXINUSING RESIDUAL DIPOLAR COUPLINGS
NEUTRON CRYSTAL STRUCTURE OF THE WILD TYPE RUBREDOXIN FROMPYROCOCCUS FURIOSUS AT 1.5A RESOLUTION
RUBREDOXIN (ZN-SUBSTITUTED) (NMR, 40 STRUCTURES)
NEAR-ATOMIC RESOLUTION NEUTRON CRYSTALLOGRAPHY ON THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN.
X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN IN D2O AT 295K (IN QUARTZ CAPILLARY) TO 1.00 ANGSTROM RESOLUTION.
X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE REDUCED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN AT 295 K ( IN QUARTZ CAPILLARY) TO 0.92 ANGSTROMS RESOLUTION.
PDBE
Y
PDBE
2012-04-20
REL
REL
1
A
O
DOD
2034
6.64
1
A
O
DOD
2085
8.40
1
A
O
DOD
2088
7.11
1
A
O
DOD
2091
9.75
1
A
O
DOD
2096
6.21
1
A
O
DOD
2097
6.36
1
A
O
DOD
2098
A
11.81
1
A
O
DOD
2112
7.40
1
A
O
DOD
2120
7.16
1
A
O
DOD
2131
7.19
FE
FE (III) ION
D8U
deuterium(1+)
D3O
trideuteriooxidanium
DOD
water
M IN POSITION 0
FE
1054
2
FE
FE
1054
A
D8U
1055
3
D8U
D8U
1055
A
D8U
1056
3
D8U
D8U
1056
A
D3O
1057
4
D3O
D3O
1057
A
D3O
1058
4
D3O
D3O
1058
A
D3O
1059
4
D3O
D3O
1059
A
D3O
1060
4
D3O
D3O
1060
A
DOD
2004
5
DOD
DOD
2004
A
DOD
2005
5
DOD
DOD
2005
A
DOD
2006
5
DOD
DOD
2006
A
DOD
2007
5
DOD
DOD
2007
A
DOD
2009
5
DOD
DOD
2009
A
DOD
2010
5
DOD
DOD
2010
A
DOD
2011
5
DOD
DOD
2011
A
DOD
2012
5
DOD
DOD
2012
A
DOD
2013
5
DOD
DOD
2013
A
DOD
2014
5
DOD
DOD
2014
A
DOD
2015
5
DOD
DOD
2015
A
DOD
2016
5
DOD
DOD
2016
A
DOD
2017
5
DOD
DOD
2017
A
DOD
2018
5
DOD
DOD
2018
A
DOD
2020
5
DOD
DOD
2020
A
DOD
2021
5
DOD
DOD
2021
A
DOD
2022
5
DOD
DOD
2022
A
DOD
2023
5
DOD
DOD
2023
A
DOD
2024
5
DOD
DOD
2024
A
DOD
2026
5
DOD
DOD
2026
A
DOD
2027
5
DOD
DOD
2027
A
DOD
2028
5
DOD
DOD
2028
A
DOD
2029
5
DOD
DOD
2029
A
DOD
2030
5
DOD
DOD
2030
A
DOD
2031
5
DOD
DOD
2031
A
DOD
2032
5
DOD
DOD
2032
A
DOD
2033
5
DOD
DOD
2033
A
DOD
2034
5
DOD
DOD
2034
A
DOD
2035
5
DOD
DOD
2035
A
DOD
2036
5
DOD
DOD
2036
A
DOD
2037
5
DOD
DOD
2037
A
DOD
2038
5
DOD
DOD
2038
A
DOD
2039
5
DOD
DOD
2039
A
DOD
2040
5
DOD
DOD
2040
A
DOD
2041
5
DOD
DOD
2041
A
DOD
2042
5
DOD
DOD
2042
A
DOD
2043
5
DOD
DOD
2043
A
DOD
2044
5
DOD
DOD
2044
A
DOD
2045
5
DOD
DOD
2045
A
DOD
2046
5
DOD
DOD
2046
A
DOD
2047
5
DOD
DOD
2047
A
DOD
2048
5
DOD
DOD
2048
A
DOD
2049
5
DOD
DOD
2049
A
DOD
2050
5
DOD
DOD
2050
A
DOD
2051
5
DOD
DOD
2051
A
DOD
2052
5
DOD
DOD
2052
A
DOD
2053
5
DOD
DOD
2053
A
DOD
2054
5
DOD
DOD
2054
A
DOD
2055
5
DOD
DOD
2055
A
DOD
2056
5
DOD
DOD
2056
A
DOD
2057
5
DOD
DOD
2057
A
DOD
2058
5
DOD
DOD
2058
A
DOD
2060
5
DOD
DOD
2060
A
DOD
2063
5
DOD
DOD
2063
A
DOD
2064
5
DOD
DOD
2064
A
DOD
2065
5
DOD
DOD
2065
A
DOD
2066
5
DOD
DOD
2066
A
DOD
2067
5
DOD
DOD
2067
A
DOD
2069
5
DOD
DOD
2069
A
DOD
2070
5
DOD
DOD
2070
A
DOD
2073
5
DOD
DOD
2073
A
DOD
2074
5
DOD
DOD
2074
A
DOD
2075
5
DOD
DOD
2075
A
DOD
2076
5
DOD
DOD
2076
A
DOD
2077
5
DOD
DOD
2077
A
DOD
2080
5
DOD
DOD
2080
A
DOD
2082
5
DOD
DOD
2082
A
DOD
2083
5
DOD
DOD
2083
A
DOD
2085
5
DOD
DOD
2085
A
DOD
2086
5
DOD
DOD
2086
A
DOD
2087
5
DOD
DOD
2087
A
DOD
2088
5
DOD
DOD
2088
A
DOD
2089
5
DOD
DOD
2089
A
DOD
2090
5
DOD
DOD
2090
A
DOD
2091
5
DOD
DOD
2091
A
DOD
2092
5
DOD
DOD
2092
A
DOD
2095
5
DOD
DOD
2095
A
DOD
2096
5
DOD
DOD
2096
A
DOD
2097
5
DOD
DOD
2097
A
DOD
2098
5
DOD
DOD
2098
A
DOD
2099
5
DOD
DOD
2099
A
DOD
2101
5
DOD
DOD
2101
A
DOD
2105
5
DOD
DOD
2105
A
DOD
2109
5
DOD
DOD
2109
A
DOD
2110
5
DOD
DOD
2110
A
DOD
2111
5
DOD
DOD
2111
A
DOD
2112
5
DOD
DOD
2112
A
DOD
2114
5
DOD
DOD
2114
A
DOD
2117
5
DOD
DOD
2117
A
DOD
2118
5
DOD
DOD
2118
A
DOD
2119
5
DOD
DOD
2119
A
DOD
2120
5
DOD
DOD
2120
A
DOD
2121
5
DOD
DOD
2121
A
DOD
2122
5
DOD
DOD
2122
A
DOD
2123
5
DOD
DOD
2123
A
DOD
2124
5
DOD
DOD
2124
A
DOD
2125
5
DOD
DOD
2125
A
DOD
2126
5
DOD
DOD
2126
A
DOD
2127
5
DOD
DOD
2127
A
DOD
2128
5
DOD
DOD
2128
A
DOD
2129
5
DOD
DOD
2129
A
DOD
2130
5
DOD
DOD
2130
A
DOD
2131
5
DOD
DOD
2131
A
DOD
2132
5
DOD
DOD
2132
A
MET
0
n
1
MET
0
A
ALA
1
n
2
ALA
1
A
LYS
2
n
3
LYS
2
A
TRP
3
n
4
TRP
3
A
VAL
4
n
5
VAL
4
A
CYS
5
n
6
CYS
5
A
LYS
6
n
7
LYS
6
A
ILE
7
n
8
ILE
7
A
CYS
8
n
9
CYS
8
A
GLY
9
n
10
GLY
9
A
TYR
10
n
11
TYR
10
A
ILE
11
n
12
ILE
11
A
TYR
12
n
13
TYR
12
A
ASP
13
n
14
ASP
13
A
GLU
14
n
15
GLU
14
A
ASP
15
n
16
ASP
15
A
ALA
16
n
17
ALA
16
A
GLY
17
n
18
GLY
17
A
ASP
18
n
19
ASP
18
A
PRO
19
n
20
PRO
19
A
ASP
20
n
21
ASP
20
A
ASN
21
n
22
ASN
21
A
GLY
22
n
23
GLY
22
A
ILE
23
n
24
ILE
23
A
SER
24
n
25
SER
24
A
PRO
25
n
26
PRO
25
A
GLY
26
n
27
GLY
26
A
THR
27
n
28
THR
27
A
LYS
28
n
29
LYS
28
A
PHE
29
n
30
PHE
29
A
GLU
30
n
31
GLU
30
A
GLU
31
n
32
GLU
31
A
LEU
32
n
33
LEU
32
A
PRO
33
n
34
PRO
33
A
ASP
34
n
35
ASP
34
A
ASP
35
n
36
ASP
35
A
TRP
36
n
37
TRP
36
A
VAL
37
n
38
VAL
37
A
CYS
38
n
39
CYS
38
A
PRO
39
n
40
PRO
39
A
ILE
40
n
41
ILE
40
A
CYS
41
n
42
CYS
41
A
GLY
42
n
43
GLY
42
A
ALA
43
n
44
ALA
43
A
PRO
44
n
45
PRO
44
A
LYS
45
n
46
LYS
45
A
SER
46
n
47
SER
46
A
GLU
47
n
48
GLU
47
A
PHE
48
n
49
PHE
48
A
GLU
49
n
50
GLU
49
A
LYS
50
n
51
LYS
50
A
LEU
51
n
52
LEU
51
A
GLU
52
n
53
GLU
52
A
ASP
53
n
54
ASP
53
A
author_and_software_defined_assembly
PISA
1
monomeric
9090
40
6170
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
8
A
SG
CYS
9
1_555
112.8
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
38
A
SG
CYS
39
1_555
115.4
A
CYS
8
A
SG
CYS
9
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
38
A
SG
CYS
39
1_555
102.0
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
41
A
SG
CYS
42
1_555
108.6
A
CYS
8
A
SG
CYS
9
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
41
A
SG
CYS
42
1_555
108.4
A
CYS
38
A
SG
CYS
39
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
41
A
SG
CYS
42
1_555
109.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
12
A
N
TYR
13
A
O
TRP
3
A
O
TRP
4
A
N
VAL
4
A
N
VAL
5
A
O
GLU
49
A
O
GLU
50
1
A
A
OE2
O
GLU
DOD
52
2124
2.16
A
1
A
ASP
18
-154.96
66.51
1
A
ASP
18
-154.96
65.82
1
A
GLU
52
B
-175.96
142.66
11.52
-0.5527
0.0000
0.0000
0.1200
0.0000
0.4326
THE HIGH HYGROSCOPICITY OF SODIUM DITHIONITE ADDED TO THE CRYSTAL FOR FE REDUCTION LEADS TO THE INTRODUCTION OF EXCHANGEABLE H AND D ATOM POSITIONS DESPITE EFFORTS TO AVOID THE PRESENCE OF HYDROGEN ATOMS.
0.2264
0.1861
0.1881
1.381
27.465
505
10500
4.8
91.97
0.27
1
0
22.14
0.60
0.90
ML
FLAT BULK SOLVENT MODEL
40.158
0.600
1.381
27.465
104
530
5
0
421
0.005
1120
0.865
1873
13.090
257
0.065
64
0.006
186
0.4166
0.3596
1.5202
123
2306
87.00
0.2568
0.2203
1.7401
114
2486
92.00
0.2071
0.1485
2.1922
139
2538
94.00
0.1935
0.1656
27.4702
129
2665
94.00
11.4
1.38
27.42
4AR4
10521
1.3
0.07
0.084
1
12.1
3.7
93.1
refinement
PHENIX
data reduction
RETREAT
data scaling
RETREAT
Neutron crystallographic structure of the reduced form perdeuterated Pyrococcus furiosus rubredoxin to 1.38 Angstrom resolution.
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
PRO
19
A
PRO
20
HELX_P
A
GLY
22
A
GLY
23
5
1
4
A
LYS
28
A
LYS
29
HELX_P
A
LEU
32
A
LEU
33
5
2
5
metalc
2.194
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
metalc
2.452
A
CYS
8
A
SG
CYS
9
1_555
A
FE
1054
B
FE
FE
1_555
metalc
2.280
A
CYS
38
A
SG
CYS
39
1_555
A
FE
1054
B
FE
FE
1_555
metalc
2.251
A
CYS
41
A
SG
CYS
42
1_555
A
FE
1054
B
FE
FE
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, PERDEUTERATED, MONOCHROMATIC NEUTRON CRYSTALLOGRAPHY, HYDRONIUM, PROTONATION STATE
RUBR_PYRFU
UNP
1
1
P24297
MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED
1
54
4AR4
0
53
P24297
A
1
1
54
3
anti-parallel
anti-parallel
A
ILE
11
A
ILE
12
A
ASP
13
A
ASP
14
A
LYS
2
A
LYS
3
A
CYS
5
A
CYS
6
A
PHE
48
A
PHE
49
A
LYS
50
A
LYS
51
BINDING SITE FOR RESIDUE FE A 1054
A
FE
1054
Software
4
BINDING SITE FOR RESIDUE D3O A 1057
A
D3O
1057
Software
3
BINDING SITE FOR RESIDUE D3O A 1058
A
D3O
1058
Software
2
BINDING SITE FOR RESIDUE D3O A 1060
A
D3O
1060
Software
2
A
CYS
5
A
CYS
6
4
1_555
A
CYS
8
A
CYS
9
4
1_555
A
CYS
38
A
CYS
39
4
1_555
A
CYS
41
A
CYS
42
4
1_555
A
ALA
1
A
ALA
2
3
1_555
A
LYS
2
A
LYS
3
3
1_555
A
LEU
51
A
LEU
52
3
1_555
A
SER
24
A
SER
25
2
1_555
A
PRO
25
A
PRO
26
2
1_555
A
ALA
16
A
ALA
17
2
1_555
A
DOD
2036
I
DOD
2
1_555
19
P 21 21 21