0.029103
0.000000
0.000000
0.000000
0.028316
0.000000
0.000000
0.000000
0.022731
0.00000
0.00000
0.00000
Cuypers, M.G.
Mason, S.A.
Blakeley, M.P.
Mitchell, E.P.
Haertlein, M.
Forsyth, V.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
34.361
35.316
43.993
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
D2 O
20.028
DEUTERATED WATER
non-polymer
Fe 3
55.845
FE (III) ION
non-polymer
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
R
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
S
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
O
N
62
N
D
N
63
N
D
N
64
N
FE
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
S
C
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
C
N
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
S
N
170
N
C
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
Y
188
N
C
Y
189
N
C
Y
190
N
C
Y
191
N
C
Y
192
N
C
Y
193
N
C
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
O
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
R
C
N
242
N
O
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
N
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
doub
Y
183
N
sing
Y
184
N
sing
N
185
N
sing
Y
186
N
doub
N
187
N
sing
Y
188
N
doub
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
Y
251
N
doub
Y
252
N
sing
Y
253
N
sing
N
254
N
sing
Y
255
N
doub
Y
256
N
sing
Y
257
N
sing
N
258
N
sing
Y
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
Y
279
N
doub
Y
280
N
sing
Y
281
N
sing
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
GE
Angew.Chem.Int.Ed.Engl.
9999
1433-7851
52
1022
10.1002/ANIE.201207071
23225503
Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation Equilibria and Hydronium Ions in Redox Changes
2013
10.2210/pdb4ar5/pdb
pdb_00004ar5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
PIXEL
2011-03-03
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.77
1.0
ID29
ESRF
0.77
SYNCHROTRON
ESRF BEAMLINE ID29
OXIDISED STATE (FE III)
6031.728
RUBREDOXIN
1
man
polymer
55.845
FE (III) ION
1
syn
non-polymer
18.015
water
135
nat
water
RD
no
no
MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED
MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
2261
PYROCOCCUS FURIOSUS
562
ESCHERICHIA COLI
PET28A
PLASMID
1
2.21
44.4
6.5
pH 6.5
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Atomic model
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2012-12-19
1
1
2013-01-30
2
0
2024-05-01
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RUBREDOXIN (METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS
RUBREDOXIN (FORMYL METHIONINE MUTANT) FROM PYROCOCCUS FURIOSUS
RUBREDOXIN (WILD TYPE) FROM PYROCOCCUS FURIOSUS
RUBREDOXIN (OXIDIZED)
RUBREDOXIN (REDUCED)
X-RAY CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROMPYROCOCCUS FURIOSUS
NEUTRON CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROMPYROCOCCUS FURIOSUS
RUBREDOXIN VARIANT (PFRD-XC4) FOLDS WITHOUT IRON
BACKBONE NMR STRUCTURE OF A MUTANT P. FURIOSUS RUBREDOXINUSING RESIDUAL DIPOLAR COUPLINGS
NEUTRON CRYSTAL STRUCTURE OF THE WILD TYPE RUBREDOXIN FROMPYROCOCCUS FURIOSUS AT 1.5A RESOLUTION
RUBREDOXIN (ZN-SUBSTITUTED) (NMR, 40 STRUCTURES)
NEAR-ATOMIC RESOLUTION NEUTRON CRYSTALLOGRAPHY ON THE OXIDISED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN.
NEUTRON CRYSTALLOGRAPHIC STRUCTURE OF THE REDUCED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN TO 1.38 ANGSTROMS RESOLUTION.
X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE REDUCED FORM PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN AT 295 K ( IN QUARTZ CAPILLARY) TO 0.92 ANGSTROMS RESOLUTION.
PDBE
Y
PDBE
2012-04-20
REL
REL
1
A
O
DOD
2072
A
7.08
1
A
O
DOD
2081
6.01
1
A
O
DOD
2120
7.89
1
A
O
DOD
2132
6.95
1
A
O
DOD
2136
6.55
1
A
O
DOD
2138
7.34
1
A
O
DOD
2140
6.89
1
A
O
DOD
2142
8.15
FE
FE (III) ION
DOD
water
100 K 0.80 A RESOLUTION OXIDISED PF RUBREDOXIN STRUCTURE.
Other
experimental model
FE
1054
2
FE
FE
1054
A
DOD
2001
3
DOD
DOD
2001
A
DOD
2002
3
DOD
DOD
2002
A
DOD
2003
3
DOD
DOD
2003
A
DOD
2004
3
DOD
DOD
2004
A
DOD
2005
3
DOD
DOD
2005
A
DOD
2006
3
DOD
DOD
2006
A
DOD
2007
3
DOD
DOD
2007
A
DOD
2008
3
DOD
DOD
2008
A
DOD
2009
3
DOD
DOD
2009
A
DOD
2010
3
DOD
DOD
2010
A
DOD
2011
3
DOD
DOD
2011
A
DOD
2012
3
DOD
DOD
2012
A
DOD
2013
3
DOD
DOD
2013
A
DOD
2014
3
DOD
DOD
2014
A
DOD
2015
3
DOD
DOD
2015
A
DOD
2016
3
DOD
DOD
2016
A
DOD
2017
3
DOD
DOD
2017
A
DOD
2018
3
DOD
DOD
2018
A
DOD
2019
3
DOD
DOD
2019
A
DOD
2020
3
DOD
DOD
2020
A
DOD
2021
3
DOD
DOD
2021
A
DOD
2022
3
DOD
DOD
2022
A
DOD
2023
3
DOD
DOD
2023
A
DOD
2024
3
DOD
DOD
2024
A
DOD
2025
3
DOD
DOD
2025
A
DOD
2026
3
DOD
DOD
2026
A
DOD
2027
3
DOD
DOD
2027
A
DOD
2028
3
DOD
DOD
2028
A
DOD
2029
3
DOD
DOD
2029
A
DOD
2030
3
DOD
DOD
2030
A
DOD
2031
3
DOD
DOD
2031
A
DOD
2032
3
DOD
DOD
2032
A
DOD
2033
3
DOD
DOD
2033
A
DOD
2034
3
DOD
DOD
2034
A
DOD
2035
3
DOD
DOD
2035
A
DOD
2036
3
DOD
DOD
2036
A
DOD
2037
3
DOD
DOD
2037
A
DOD
2039
3
DOD
DOD
2039
A
DOD
2040
3
DOD
DOD
2040
A
DOD
2041
3
DOD
DOD
2041
A
DOD
2042
3
DOD
DOD
2042
A
DOD
2043
3
DOD
DOD
2043
A
DOD
2044
3
DOD
DOD
2044
A
DOD
2045
3
DOD
DOD
2045
A
DOD
2046
3
DOD
DOD
2046
A
DOD
2047
3
DOD
DOD
2047
A
DOD
2048
3
DOD
DOD
2048
A
DOD
2049
3
DOD
DOD
2049
A
DOD
2050
3
DOD
DOD
2050
A
DOD
2051
3
DOD
DOD
2051
A
DOD
2052
3
DOD
DOD
2052
A
DOD
2053
3
DOD
DOD
2053
A
DOD
2054
3
DOD
DOD
2054
A
DOD
2055
3
DOD
DOD
2055
A
DOD
2056
3
DOD
DOD
2056
A
DOD
2057
3
DOD
DOD
2057
A
DOD
2058
3
DOD
DOD
2058
A
DOD
2059
3
DOD
DOD
2059
A
DOD
2060
3
DOD
DOD
2060
A
DOD
2061
3
DOD
DOD
2061
A
DOD
2062
3
DOD
DOD
2062
A
DOD
2063
3
DOD
DOD
2063
A
DOD
2064
3
DOD
DOD
2064
A
DOD
2065
3
DOD
DOD
2065
A
DOD
2066
3
DOD
DOD
2066
A
DOD
2067
3
DOD
DOD
2067
A
DOD
2068
3
DOD
DOD
2068
A
DOD
2070
3
DOD
DOD
2070
A
DOD
2072
3
DOD
DOD
2072
A
DOD
2073
3
DOD
DOD
2073
A
DOD
2074
3
DOD
DOD
2074
A
DOD
2075
3
DOD
DOD
2075
A
DOD
2076
3
DOD
DOD
2076
A
DOD
2077
3
DOD
DOD
2077
A
DOD
2078
3
DOD
DOD
2078
A
DOD
2079
3
DOD
DOD
2079
A
DOD
2080
3
DOD
DOD
2080
A
DOD
2081
3
DOD
DOD
2081
A
DOD
2082
3
DOD
DOD
2082
A
DOD
2084
3
DOD
DOD
2084
A
DOD
2085
3
DOD
DOD
2085
A
DOD
2087
3
DOD
DOD
2087
A
DOD
2089
3
DOD
DOD
2089
A
DOD
2090
3
DOD
DOD
2090
A
DOD
2091
3
DOD
DOD
2091
A
DOD
2092
3
DOD
DOD
2092
A
DOD
2093
3
DOD
DOD
2093
A
DOD
2094
3
DOD
DOD
2094
A
DOD
2095
3
DOD
DOD
2095
A
DOD
2096
3
DOD
DOD
2096
A
DOD
2097
3
DOD
DOD
2097
A
DOD
2098
3
DOD
DOD
2098
A
DOD
2099
3
DOD
DOD
2099
A
DOD
2100
3
DOD
DOD
2100
A
DOD
2101
3
DOD
DOD
2101
A
DOD
2102
3
DOD
DOD
2102
A
DOD
2103
3
DOD
DOD
2103
A
DOD
2104
3
DOD
DOD
2104
A
DOD
2105
3
DOD
DOD
2105
A
DOD
2106
3
DOD
DOD
2106
A
DOD
2107
3
DOD
DOD
2107
A
DOD
2108
3
DOD
DOD
2108
A
DOD
2109
3
DOD
DOD
2109
A
DOD
2110
3
DOD
DOD
2110
A
DOD
2111
3
DOD
DOD
2111
A
DOD
2114
3
DOD
DOD
2114
A
DOD
2115
3
DOD
DOD
2115
A
DOD
2116
3
DOD
DOD
2116
A
DOD
2119
3
DOD
DOD
2119
A
DOD
2120
3
DOD
DOD
2120
A
DOD
2121
3
DOD
DOD
2121
A
DOD
2122
3
DOD
DOD
2122
A
DOD
2123
3
DOD
DOD
2123
A
DOD
2128
3
DOD
DOD
2128
A
DOD
2129
3
DOD
DOD
2129
A
DOD
2130
3
DOD
DOD
2130
A
DOD
2132
3
DOD
DOD
2132
A
DOD
2133
3
DOD
DOD
2133
A
DOD
2134
3
DOD
DOD
2134
A
DOD
2135
3
DOD
DOD
2135
A
DOD
2136
3
DOD
DOD
2136
A
DOD
2137
3
DOD
DOD
2137
A
DOD
2138
3
DOD
DOD
2138
A
DOD
2139
3
DOD
DOD
2139
A
DOD
2140
3
DOD
DOD
2140
A
DOD
2141
3
DOD
DOD
2141
A
DOD
2142
3
DOD
DOD
2142
A
DOD
2143
3
DOD
DOD
2143
A
DOD
2144
3
DOD
DOD
2144
A
DOD
2145
3
DOD
DOD
2145
A
DOD
2146
3
DOD
DOD
2146
A
DOD
2147
3
DOD
DOD
2147
A
DOD
2148
3
DOD
DOD
2148
A
DOD
2150
3
DOD
DOD
2150
A
DOD
2151
3
DOD
DOD
2151
A
MET
0
n
1
MET
0
A
ALA
1
n
2
ALA
1
A
LYS
2
n
3
LYS
2
A
TRP
3
n
4
TRP
3
A
VAL
4
n
5
VAL
4
A
CYS
5
n
6
CYS
5
A
LYS
6
n
7
LYS
6
A
ILE
7
n
8
ILE
7
A
CYS
8
n
9
CYS
8
A
GLY
9
n
10
GLY
9
A
TYR
10
n
11
TYR
10
A
ILE
11
n
12
ILE
11
A
TYR
12
n
13
TYR
12
A
ASP
13
n
14
ASP
13
A
GLU
14
n
15
GLU
14
A
ASP
15
n
16
ASP
15
A
ALA
16
n
17
ALA
16
A
GLY
17
n
18
GLY
17
A
ASP
18
n
19
ASP
18
A
PRO
19
n
20
PRO
19
A
ASP
20
n
21
ASP
20
A
ASN
21
n
22
ASN
21
A
GLY
22
n
23
GLY
22
A
ILE
23
n
24
ILE
23
A
SER
24
n
25
SER
24
A
PRO
25
n
26
PRO
25
A
GLY
26
n
27
GLY
26
A
THR
27
n
28
THR
27
A
LYS
28
n
29
LYS
28
A
PHE
29
n
30
PHE
29
A
GLU
30
n
31
GLU
30
A
GLU
31
n
32
GLU
31
A
LEU
32
n
33
LEU
32
A
PRO
33
n
34
PRO
33
A
ASP
34
n
35
ASP
34
A
ASP
35
n
36
ASP
35
A
TRP
36
n
37
TRP
36
A
VAL
37
n
38
VAL
37
A
CYS
38
n
39
CYS
38
A
PRO
39
n
40
PRO
39
A
ILE
40
n
41
ILE
40
A
CYS
41
n
42
CYS
41
A
GLY
42
n
43
GLY
42
A
ALA
43
n
44
ALA
43
A
PRO
44
n
45
PRO
44
A
LYS
45
n
46
LYS
45
A
SER
46
n
47
SER
46
A
GLU
47
n
48
GLU
47
A
PHE
48
n
49
PHE
48
A
GLU
49
n
50
GLU
49
A
LYS
50
n
51
LYS
50
A
LEU
51
n
52
LEU
51
A
GLU
52
n
53
GLU
52
A
ASP
53
n
54
ASP
53
A
author_and_software_defined_assembly
PISA
1
monomeric
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
8
A
SG
CYS
9
1_555
113.0
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
38
A
SG
CYS
39
1_555
111.3
A
CYS
8
A
SG
CYS
9
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
38
A
SG
CYS
39
1_555
102.9
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
41
A
SG
CYS
42
1_555
104.1
A
CYS
8
A
SG
CYS
9
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
41
A
SG
CYS
42
1_555
113.8
A
CYS
38
A
SG
CYS
39
1_555
A
FE
1054
B
FE
FE
1_555
A
CYS
41
A
SG
CYS
42
1_555
112.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
12
A
N
TYR
13
A
O
TRP
3
A
O
TRP
4
A
N
VAL
4
A
N
VAL
5
A
O
GLU
49
A
O
GLU
50
1
A
ASP
18
-153.23
68.39
1
A
ASP
18
-153.23
67.33
0.2004
0.0000
0.0000
-0.1398
0.0000
-0.0606
CRYSTAL SEALED IN A QUARTZ CAPILLARY FOR 295K X-RAY DATA COLLECTION ON 2 DIFFERENT ZONES OVER TOTAL 90 DEGREES OSCILLATION ROTATION.
0.1189
0.1095
0.1099
1.000
27.540
1439
28386
5.1
95.92
0.06
1
1.36
FOURIER SYNTHESIS
8.98
0.60
0.90
100 K 0.80 A RESOLUTION OXIDISED PF RUBREDOXIN STRUCTURE.
ML
FLAT BULK SOLVENT MODEL
104.285
0.500
1.000
27.540
135
557
1
0
421
0.007
479
1.229
657
11.701
186
0.079
64
0.008
90
0.2243
0.2001
1.0357
154
2689
98.00
0.1519
0.1596
1.0772
142
2629
95.00
0.1135
0.1131
1.1262
143
2736
99.00
0.1103
0.0963
1.1856
160
2766
99.00
0.1086
0.0926
1.2599
149
2710
98.00
0.1006
0.0892
1.3572
137
2651
95.00
0.0980
0.0821
1.4938
131
2727
96.00
0.1009
0.0790
1.7099
142
2707
96.00
0.1122
0.0912
2.1541
142
2661
93.00
0.1270
0.1296
27.5504
139
2671
89.00
11.15
1.00
35.32
4AR5
28427
2.0
0.04
1
11.40
3.3
96.7
0.47
1.00
1.05
2.10
1
3.1
98.0
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
SCALA
phasing
PHENIX
X-ray crystallographic structure of the oxidised form perdeuterated Pyrococcus furiosus rubredoxin in D2O at 295K (in quartz capillary) to 1.00 Angstrom resolution.
1
N
N
2
N
N
3
N
N
A
PRO
19
A
PRO
20
HELX_P
A
GLY
22
A
GLY
23
5
1
4
A
LYS
28
A
LYS
29
HELX_P
A
LEU
32
A
LEU
33
5
2
5
metalc
2.294
A
CYS
5
A
SG
CYS
6
1_555
A
FE
1054
B
FE
FE
1_555
metalc
2.269
A
CYS
8
A
SG
CYS
9
1_555
A
FE
1054
B
FE
FE
1_555
metalc
2.312
A
CYS
38
A
SG
CYS
39
1_555
A
FE
1054
B
FE
FE
1_555
metalc
2.268
A
CYS
41
A
SG
CYS
42
1_555
A
FE
1054
B
FE
FE
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, PERDEUTERATED, AMBIENT CAPILLARY
RUBR_PYRFU
UNP
1
P24297
1
54
4AR5
0
53
P24297
A
1
1
54
3
anti-parallel
anti-parallel
A
ILE
11
A
ILE
12
A
ASP
13
A
ASP
14
A
LYS
2
A
LYS
3
A
CYS
5
A
CYS
6
A
PHE
48
A
PHE
49
A
LYS
50
A
LYS
51
BINDING SITE FOR RESIDUE FE A 1054
A
FE
1054
Software
4
A
CYS
5
A
CYS
6
4
1_555
A
CYS
8
A
CYS
9
4
1_555
A
CYS
38
A
CYS
39
4
1_555
A
CYS
41
A
CYS
42
4
1_555
19
P 21 21 21