0.011410
0.000000
0.000000
0.000000
0.011410
0.000000
0.000000
0.000000
0.004530
0.00000
0.00000
0.00000
Gangloff, M.
Gay, N.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
87.643
87.643
220.741
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C8 H4 I3 N O4
558.835
5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid
5-Amino-2,4,6-triiodoisophthalic acid
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
J.Appl.Crystallogr.
JACGAR
0228
0021-8898
46
337
10.1107/S0021889812051606
23596340
Liesegang-Like Patterns of Toll Crystals Grown in Gel.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-01-24
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.7712
1.0
ID23-1
ESRF
1.7712
SYNCHROTRON
ESRF BEAMLINE ID23-1
CHIMERIC PROTEIN
31957.838
TOLL RECEPTOR, VARIABLE LYMPHOCYTE RECEPTOR B.61 CHIMERA
TOLL RECEPTOR (UNP RESIDUES 28-228), VARIABLE LYMPHOCYTE RECEPTOR B.61 (UNP RESIDUES 133-201)
2
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
3
man
non-polymer
558.835
5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid
2
syn
non-polymer
TOLL, VARIABLE LYMPHOCYTE RECEPTOR B
no
no
SFGRDACSEMSIDGLCQCAPIMSEYEIICPANAENPTFRLTIQPKDYVQIMCNLTDTTDYQQLPKKLRIGEVDRVQMRRC
MLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEE
MPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL
SRWLNKNSQKEQGSAKCSGSGKPVRSIICPTTGENLYFQ
SFGRDACSEMSIDGLCQCAPIMSEYEIICPANAENPTFRLTIQPKDYVQIMCNLTDTTDYQQLPKKLRIGEVDRVQMRRC
MLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEE
MPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL
SRWLNKNSQKEQGSAKCSGSGKPVRSIICPTTGENLYFQ
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
FRUIT FLY
sample
1
201
7227
DROSOPHILA MELANOGASTER
SF9
7108
SPODOPTERA FRUGIPERDA
BACULOVIRUS
PFASTBAC-1
INSHORE HAGFISH
sample
204
272
7764
EPTATRETUS BURGERI
SF9
7108
SPODOPTERA FRUGIPERDA
BACULOVIRUS
PFASTBAC-1
1
3.43
63.86
NONE
7
SODIUM MALONATE AND 5-AMINO-2,4, 6-TRIIODOISOPHTHALIC ACID, pH 7
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Source and taxonomy
Data collection
Derived calculations
Other
Structure summary
1
0
2013-02-27
1
1
2013-05-01
1
2
2017-03-15
1
3
2020-07-29
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF DROSOPHILA TOLL RECEPTOR
PDBE
Y
PDBE
2012-04-26
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
I3C
5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid
VARIABLE LYMPHOCYTE RECEPTOR B.61 (GENBANK AAZ16361)
NAG
401
2
NAG
NAG
401
A
NAG
501
2
NAG
NAG
501
A
I3C
1300
3
I3C
I3C
1300
A
NAG
401
2
NAG
NAG
401
B
I3C
1300
3
I3C
I3C
1300
B
SER
28
n
1
SER
28
A
PHE
29
n
2
PHE
29
A
GLY
30
n
3
GLY
30
A
ARG
31
n
4
ARG
31
A
ASP
32
n
5
ASP
32
A
ALA
33
n
6
ALA
33
A
CYS
34
n
7
CYS
34
A
SER
35
n
8
SER
35
A
GLU
36
n
9
GLU
36
A
MET
37
n
10
MET
37
A
SER
38
n
11
SER
38
A
ILE
39
n
12
ILE
39
A
ASP
40
n
13
ASP
40
A
GLY
41
n
14
GLY
41
A
LEU
42
n
15
LEU
42
A
CYS
43
n
16
CYS
43
A
GLN
44
n
17
GLN
44
A
CYS
45
n
18
CYS
45
A
ALA
46
n
19
ALA
46
A
PRO
47
n
20
PRO
47
A
ILE
48
n
21
ILE
48
A
MET
49
n
22
MET
49
A
SER
50
n
23
SER
50
A
GLU
51
n
24
GLU
51
A
TYR
52
n
25
TYR
52
A
GLU
53
n
26
GLU
53
A
ILE
54
n
27
ILE
54
A
ILE
55
n
28
ILE
55
A
CYS
56
n
29
CYS
56
A
PRO
57
n
30
PRO
57
A
ALA
58
n
31
ALA
58
A
ASN
59
n
32
ASN
59
A
ALA
60
n
33
ALA
60
A
GLU
61
n
34
GLU
61
A
ASN
62
n
35
ASN
62
A
PRO
63
n
36
PRO
63
A
THR
64
n
37
THR
64
A
PHE
65
n
38
PHE
65
A
ARG
66
n
39
ARG
66
A
LEU
67
n
40
LEU
67
A
THR
68
n
41
THR
68
A
ILE
69
n
42
ILE
69
A
GLN
70
n
43
GLN
70
A
PRO
71
n
44
PRO
71
A
LYS
72
n
45
LYS
72
A
ASP
73
n
46
ASP
73
A
TYR
74
n
47
TYR
74
A
VAL
75
n
48
VAL
75
A
GLN
76
n
49
GLN
76
A
ILE
77
n
50
ILE
77
A
MET
78
n
51
MET
78
A
CYS
79
n
52
CYS
79
A
ASN
80
n
53
ASN
80
A
LEU
81
n
54
LEU
81
A
THR
82
n
55
THR
82
A
ASP
83
n
56
ASP
83
A
THR
84
n
57
THR
84
A
THR
85
n
58
THR
85
A
ASP
86
n
59
ASP
86
A
TYR
87
n
60
TYR
87
A
GLN
88
n
61
GLN
88
A
GLN
89
n
62
GLN
89
A
LEU
90
n
63
LEU
90
A
PRO
91
n
64
PRO
91
A
LYS
92
n
65
LYS
92
A
LYS
93
n
66
LYS
93
A
LEU
94
n
67
LEU
94
A
ARG
95
n
68
ARG
95
A
ILE
96
n
69
ILE
96
A
GLY
97
n
70
GLY
97
A
GLU
98
n
71
GLU
98
A
VAL
99
n
72
VAL
99
A
ASP
100
n
73
ASP
100
A
ARG
101
n
74
ARG
101
A
VAL
102
n
75
VAL
102
A
GLN
103
n
76
GLN
103
A
MET
104
n
77
MET
104
A
ARG
105
n
78
ARG
105
A
ARG
106
n
79
ARG
106
A
CYS
107
n
80
CYS
107
A
MET
108
n
81
MET
108
A
LEU
109
n
82
LEU
109
A
PRO
110
n
83
PRO
110
A
GLY
111
n
84
GLY
111
A
HIS
112
n
85
HIS
112
A
THR
113
n
86
THR
113
A
PRO
114
n
87
PRO
114
A
ILE
115
n
88
ILE
115
A
ALA
116
n
89
ALA
116
A
SER
117
n
90
SER
117
A
ILE
118
n
91
ILE
118
A
LEU
119
n
92
LEU
119
A
ASP
120
n
93
ASP
120
A
TYR
121
n
94
TYR
121
A
LEU
122
n
95
LEU
122
A
GLY
123
n
96
GLY
123
A
ILE
124
n
97
ILE
124
A
VAL
125
n
98
VAL
125
A
SER
126
n
99
SER
126
A
PRO
127
n
100
PRO
127
A
THR
128
n
101
THR
128
A
THR
129
n
102
THR
129
A
LEU
130
n
103
LEU
130
A
ILE
131
n
104
ILE
131
A
PHE
132
n
105
PHE
132
A
GLU
133
n
106
GLU
133
A
SER
134
n
107
SER
134
A
ASP
135
n
108
ASP
135
A
ASN
136
n
109
ASN
136
A
LEU
137
n
110
LEU
137
A
GLY
138
n
111
GLY
138
A
MET
139
n
112
MET
139
A
ASN
140
n
113
ASN
140
A
ILE
141
n
114
ILE
141
A
THR
142
n
115
THR
142
A
ARG
143
n
116
ARG
143
A
GLN
144
n
117
GLN
144
A
HIS
145
n
118
HIS
145
A
LEU
146
n
119
LEU
146
A
ASP
147
n
120
ASP
147
A
ARG
148
n
121
ARG
148
A
LEU
149
n
122
LEU
149
A
HIS
150
n
123
HIS
150
A
GLY
151
n
124
GLY
151
A
LEU
152
n
125
LEU
152
A
LYS
153
n
126
LYS
153
A
ARG
154
n
127
ARG
154
A
PHE
155
n
128
PHE
155
A
ARG
156
n
129
ARG
156
A
PHE
157
n
130
PHE
157
A
THR
158
n
131
THR
158
A
THR
159
n
132
THR
159
A
ARG
160
n
133
ARG
160
A
ARG
161
n
134
ARG
161
A
LEU
162
n
135
LEU
162
A
THR
163
n
136
THR
163
A
HIS
164
n
137
HIS
164
A
ILE
165
n
138
ILE
165
A
PRO
166
n
139
PRO
166
A
ALA
167
n
140
ALA
167
A
ASN
168
n
141
ASN
168
A
LEU
169
n
142
LEU
169
A
LEU
170
n
143
LEU
170
A
THR
171
n
144
THR
171
A
ASP
172
n
145
ASP
172
A
MET
173
n
146
MET
173
A
ARG
174
n
147
ARG
174
A
ASN
175
n
148
ASN
175
A
LEU
176
n
149
LEU
176
A
SER
177
n
150
SER
177
A
HIS
178
n
151
HIS
178
A
LEU
179
n
152
LEU
179
A
GLU
180
n
153
GLU
180
A
LEU
181
n
154
LEU
181
A
ARG
182
n
155
ARG
182
A
ALA
183
n
156
ALA
183
A
ASN
184
n
157
ASN
184
A
ILE
185
n
158
ILE
185
A
GLU
186
n
159
GLU
186
A
GLU
187
n
160
GLU
187
A
MET
188
n
161
MET
188
A
PRO
189
n
162
PRO
189
A
SER
190
n
163
SER
190
A
HIS
191
n
164
HIS
191
A
LEU
192
n
165
LEU
192
A
PHE
193
n
166
PHE
193
A
ASP
194
n
167
ASP
194
A
ASP
195
n
168
ASP
195
A
LEU
196
n
169
LEU
196
A
GLU
197
n
170
GLU
197
A
ASN
198
n
171
ASN
198
A
LEU
199
n
172
LEU
199
A
GLU
200
n
173
GLU
200
A
SER
201
n
174
SER
201
A
ILE
202
n
175
ILE
202
A
GLU
203
n
176
GLU
203
A
PHE
204
n
177
PHE
204
A
GLY
205
n
178
GLY
205
A
SER
206
n
179
SER
206
A
ASN
207
n
180
ASN
207
A
LYS
208
n
181
LYS
208
A
LEU
209
n
182
LEU
209
A
ARG
210
n
183
ARG
210
A
GLN
211
n
184
GLN
211
A
MET
212
n
185
MET
212
A
PRO
213
n
186
PRO
213
A
ARG
214
n
187
ARG
214
A
GLY
215
n
188
GLY
215
A
ILE
216
n
189
ILE
216
A
PHE
217
n
190
PHE
217
A
GLY
218
n
191
GLY
218
A
LYS
219
n
192
LYS
219
A
MET
220
n
193
MET
220
A
PRO
221
n
194
PRO
221
A
LYS
222
n
195
LYS
222
A
LEU
223
n
196
LEU
223
A
LYS
224
n
197
LYS
224
A
GLN
225
n
198
GLN
225
A
LEU
226
n
199
LEU
226
A
ASN
227
n
200
ASN
227
A
LEU
228
n
201
LEU
228
A
ALA
229
n
202
ALA
229
A
SER
230
n
203
SER
230
A
ASN
231
n
204
ASN
231
A
GLN
232
n
205
GLN
232
A
LEU
233
n
206
LEU
233
A
LYS
234
n
207
LYS
234
A
SER
235
n
208
SER
235
A
VAL
236
n
209
VAL
236
A
PRO
237
n
210
PRO
237
A
ASP
238
n
211
ASP
238
A
GLY
239
n
212
GLY
239
A
ILE
240
n
213
ILE
240
A
PHE
241
n
214
PHE
241
A
ASP
242
n
215
ASP
242
A
ARG
243
n
216
ARG
243
A
LEU
244
n
217
LEU
244
A
THR
245
n
218
THR
245
A
SER
246
n
219
SER
246
A
LEU
247
n
220
LEU
247
A
GLN
248
n
221
GLN
248
A
LYS
249
n
222
LYS
249
A
ILE
250
n
223
ILE
250
A
TRP
251
n
224
TRP
251
A
LEU
252
n
225
LEU
252
A
HIS
253
n
226
HIS
253
A
THR
254
n
227
THR
254
A
ASN
255
n
228
ASN
255
A
PRO
256
n
229
PRO
256
A
TRP
257
n
230
TRP
257
A
ASP
258
n
231
ASP
258
A
CYS
259
n
232
CYS
259
A
SER
260
n
233
SER
260
A
CYS
261
n
234
CYS
261
A
PRO
262
n
235
PRO
262
A
ARG
263
n
236
ARG
263
A
ILE
264
n
237
ILE
264
A
ASP
265
n
238
ASP
265
A
TYR
266
n
239
TYR
266
A
LEU
267
n
240
LEU
267
A
SER
268
n
241
SER
268
A
ARG
269
n
242
ARG
269
A
TRP
270
n
243
TRP
270
A
LEU
271
n
244
LEU
271
A
ASN
272
n
245
ASN
272
A
LYS
273
n
246
LYS
273
A
ASN
274
n
247
ASN
274
A
SER
275
n
248
SER
275
A
GLN
276
n
249
GLN
276
A
LYS
277
n
250
LYS
277
A
GLU
278
n
251
GLU
278
A
GLN
279
n
252
GLN
279
A
GLY
280
n
253
GLY
280
A
SER
281
n
254
SER
281
A
ALA
282
n
255
ALA
282
A
LYS
283
n
256
LYS
283
A
CYS
284
n
257
CYS
284
A
SER
285
n
258
SER
285
A
GLY
286
n
259
GLY
286
A
SER
287
n
260
SER
287
A
GLY
288
n
261
GLY
288
A
LYS
289
n
262
LYS
289
A
PRO
290
n
263
PRO
290
A
VAL
291
n
264
VAL
291
A
ARG
292
n
265
ARG
292
A
SER
293
n
266
SER
293
A
ILE
294
n
267
ILE
294
A
ILE
295
n
268
ILE
295
A
CYS
296
n
269
CYS
296
A
PRO
297
n
270
PRO
297
A
THR
298
n
271
THR
298
A
THR
299
n
272
THR
299
A
n
273
300
A
n
274
301
A
n
275
302
A
n
276
303
A
n
277
304
A
n
278
305
A
n
279
306
A
SER
28
n
1
SER
28
B
PHE
29
n
2
PHE
29
B
GLY
30
n
3
GLY
30
B
ARG
31
n
4
ARG
31
B
ASP
32
n
5
ASP
32
B
ALA
33
n
6
ALA
33
B
CYS
34
n
7
CYS
34
B
SER
35
n
8
SER
35
B
GLU
36
n
9
GLU
36
B
MET
37
n
10
MET
37
B
SER
38
n
11
SER
38
B
ILE
39
n
12
ILE
39
B
ASP
40
n
13
ASP
40
B
GLY
41
n
14
GLY
41
B
LEU
42
n
15
LEU
42
B
CYS
43
n
16
CYS
43
B
GLN
44
n
17
GLN
44
B
CYS
45
n
18
CYS
45
B
ALA
46
n
19
ALA
46
B
PRO
47
n
20
PRO
47
B
ILE
48
n
21
ILE
48
B
MET
49
n
22
MET
49
B
SER
50
n
23
SER
50
B
GLU
51
n
24
GLU
51
B
TYR
52
n
25
TYR
52
B
GLU
53
n
26
GLU
53
B
ILE
54
n
27
ILE
54
B
ILE
55
n
28
ILE
55
B
CYS
56
n
29
CYS
56
B
PRO
57
n
30
PRO
57
B
ALA
58
n
31
ALA
58
B
ASN
59
n
32
ASN
59
B
ALA
60
n
33
ALA
60
B
GLU
61
n
34
GLU
61
B
ASN
62
n
35
ASN
62
B
PRO
63
n
36
PRO
63
B
THR
64
n
37
THR
64
B
PHE
65
n
38
PHE
65
B
ARG
66
n
39
ARG
66
B
LEU
67
n
40
LEU
67
B
THR
68
n
41
THR
68
B
ILE
69
n
42
ILE
69
B
GLN
70
n
43
GLN
70
B
PRO
71
n
44
PRO
71
B
LYS
72
n
45
LYS
72
B
ASP
73
n
46
ASP
73
B
TYR
74
n
47
TYR
74
B
VAL
75
n
48
VAL
75
B
GLN
76
n
49
GLN
76
B
ILE
77
n
50
ILE
77
B
MET
78
n
51
MET
78
B
CYS
79
n
52
CYS
79
B
ASN
80
n
53
ASN
80
B
LEU
81
n
54
LEU
81
B
THR
82
n
55
THR
82
B
ASP
83
n
56
ASP
83
B
THR
84
n
57
THR
84
B
THR
85
n
58
THR
85
B
ASP
86
n
59
ASP
86
B
TYR
87
n
60
TYR
87
B
GLN
88
n
61
GLN
88
B
GLN
89
n
62
GLN
89
B
LEU
90
n
63
LEU
90
B
PRO
91
n
64
PRO
91
B
LYS
92
n
65
LYS
92
B
LYS
93
n
66
LYS
93
B
LEU
94
n
67
LEU
94
B
ARG
95
n
68
ARG
95
B
ILE
96
n
69
ILE
96
B
GLY
97
n
70
GLY
97
B
GLU
98
n
71
GLU
98
B
VAL
99
n
72
VAL
99
B
ASP
100
n
73
ASP
100
B
ARG
101
n
74
ARG
101
B
VAL
102
n
75
VAL
102
B
GLN
103
n
76
GLN
103
B
MET
104
n
77
MET
104
B
ARG
105
n
78
ARG
105
B
ARG
106
n
79
ARG
106
B
CYS
107
n
80
CYS
107
B
MET
108
n
81
MET
108
B
LEU
109
n
82
LEU
109
B
PRO
110
n
83
PRO
110
B
GLY
111
n
84
GLY
111
B
HIS
112
n
85
HIS
112
B
THR
113
n
86
THR
113
B
PRO
114
n
87
PRO
114
B
ILE
115
n
88
ILE
115
B
ALA
116
n
89
ALA
116
B
SER
117
n
90
SER
117
B
ILE
118
n
91
ILE
118
B
LEU
119
n
92
LEU
119
B
ASP
120
n
93
ASP
120
B
TYR
121
n
94
TYR
121
B
LEU
122
n
95
LEU
122
B
GLY
123
n
96
GLY
123
B
ILE
124
n
97
ILE
124
B
VAL
125
n
98
VAL
125
B
SER
126
n
99
SER
126
B
PRO
127
n
100
PRO
127
B
THR
128
n
101
THR
128
B
THR
129
n
102
THR
129
B
LEU
130
n
103
LEU
130
B
ILE
131
n
104
ILE
131
B
PHE
132
n
105
PHE
132
B
GLU
133
n
106
GLU
133
B
SER
134
n
107
SER
134
B
ASP
135
n
108
ASP
135
B
ASN
136
n
109
ASN
136
B
LEU
137
n
110
LEU
137
B
GLY
138
n
111
GLY
138
B
MET
139
n
112
MET
139
B
ASN
140
n
113
ASN
140
B
ILE
141
n
114
ILE
141
B
THR
142
n
115
THR
142
B
ARG
143
n
116
ARG
143
B
GLN
144
n
117
GLN
144
B
HIS
145
n
118
HIS
145
B
LEU
146
n
119
LEU
146
B
ASP
147
n
120
ASP
147
B
ARG
148
n
121
ARG
148
B
LEU
149
n
122
LEU
149
B
HIS
150
n
123
HIS
150
B
GLY
151
n
124
GLY
151
B
LEU
152
n
125
LEU
152
B
LYS
153
n
126
LYS
153
B
ARG
154
n
127
ARG
154
B
PHE
155
n
128
PHE
155
B
ARG
156
n
129
ARG
156
B
PHE
157
n
130
PHE
157
B
THR
158
n
131
THR
158
B
THR
159
n
132
THR
159
B
ARG
160
n
133
ARG
160
B
ARG
161
n
134
ARG
161
B
LEU
162
n
135
LEU
162
B
THR
163
n
136
THR
163
B
HIS
164
n
137
HIS
164
B
ILE
165
n
138
ILE
165
B
PRO
166
n
139
PRO
166
B
ALA
167
n
140
ALA
167
B
ASN
168
n
141
ASN
168
B
LEU
169
n
142
LEU
169
B
LEU
170
n
143
LEU
170
B
THR
171
n
144
THR
171
B
ASP
172
n
145
ASP
172
B
MET
173
n
146
MET
173
B
ARG
174
n
147
ARG
174
B
ASN
175
n
148
ASN
175
B
LEU
176
n
149
LEU
176
B
SER
177
n
150
SER
177
B
HIS
178
n
151
HIS
178
B
LEU
179
n
152
LEU
179
B
GLU
180
n
153
GLU
180
B
LEU
181
n
154
LEU
181
B
ARG
182
n
155
ARG
182
B
ALA
183
n
156
ALA
183
B
ASN
184
n
157
ASN
184
B
ILE
185
n
158
ILE
185
B
GLU
186
n
159
GLU
186
B
GLU
187
n
160
GLU
187
B
MET
188
n
161
MET
188
B
PRO
189
n
162
PRO
189
B
SER
190
n
163
SER
190
B
HIS
191
n
164
HIS
191
B
LEU
192
n
165
LEU
192
B
PHE
193
n
166
PHE
193
B
ASP
194
n
167
ASP
194
B
ASP
195
n
168
ASP
195
B
LEU
196
n
169
LEU
196
B
GLU
197
n
170
GLU
197
B
ASN
198
n
171
ASN
198
B
LEU
199
n
172
LEU
199
B
GLU
200
n
173
GLU
200
B
SER
201
n
174
SER
201
B
ILE
202
n
175
ILE
202
B
GLU
203
n
176
GLU
203
B
PHE
204
n
177
PHE
204
B
GLY
205
n
178
GLY
205
B
SER
206
n
179
SER
206
B
ASN
207
n
180
ASN
207
B
LYS
208
n
181
LYS
208
B
LEU
209
n
182
LEU
209
B
ARG
210
n
183
ARG
210
B
GLN
211
n
184
GLN
211
B
MET
212
n
185
MET
212
B
PRO
213
n
186
PRO
213
B
ARG
214
n
187
ARG
214
B
GLY
215
n
188
GLY
215
B
ILE
216
n
189
ILE
216
B
PHE
217
n
190
PHE
217
B
GLY
218
n
191
GLY
218
B
LYS
219
n
192
LYS
219
B
MET
220
n
193
MET
220
B
PRO
221
n
194
PRO
221
B
LYS
222
n
195
LYS
222
B
LEU
223
n
196
LEU
223
B
LYS
224
n
197
LYS
224
B
GLN
225
n
198
GLN
225
B
LEU
226
n
199
LEU
226
B
ASN
227
n
200
ASN
227
B
LEU
228
n
201
LEU
228
B
ALA
229
n
202
ALA
229
B
SER
230
n
203
SER
230
B
ASN
231
n
204
ASN
231
B
GLN
232
n
205
GLN
232
B
LEU
233
n
206
LEU
233
B
LYS
234
n
207
LYS
234
B
SER
235
n
208
SER
235
B
VAL
236
n
209
VAL
236
B
PRO
237
n
210
PRO
237
B
ASP
238
n
211
ASP
238
B
GLY
239
n
212
GLY
239
B
ILE
240
n
213
ILE
240
B
PHE
241
n
214
PHE
241
B
ASP
242
n
215
ASP
242
B
ARG
243
n
216
ARG
243
B
LEU
244
n
217
LEU
244
B
THR
245
n
218
THR
245
B
SER
246
n
219
SER
246
B
LEU
247
n
220
LEU
247
B
GLN
248
n
221
GLN
248
B
LYS
249
n
222
LYS
249
B
ILE
250
n
223
ILE
250
B
TRP
251
n
224
TRP
251
B
LEU
252
n
225
LEU
252
B
HIS
253
n
226
HIS
253
B
THR
254
n
227
THR
254
B
ASN
255
n
228
ASN
255
B
PRO
256
n
229
PRO
256
B
TRP
257
n
230
TRP
257
B
ASP
258
n
231
ASP
258
B
CYS
259
n
232
CYS
259
B
SER
260
n
233
SER
260
B
CYS
261
n
234
CYS
261
B
PRO
262
n
235
PRO
262
B
ARG
263
n
236
ARG
263
B
ILE
264
n
237
ILE
264
B
ASP
265
n
238
ASP
265
B
TYR
266
n
239
TYR
266
B
LEU
267
n
240
LEU
267
B
SER
268
n
241
SER
268
B
ARG
269
n
242
ARG
269
B
TRP
270
n
243
TRP
270
B
LEU
271
n
244
LEU
271
B
ASN
272
n
245
ASN
272
B
LYS
273
n
246
LYS
273
B
ASN
274
n
247
ASN
274
B
SER
275
n
248
SER
275
B
GLN
276
n
249
GLN
276
B
LYS
277
n
250
LYS
277
B
GLU
278
n
251
GLU
278
B
GLN
279
n
252
GLN
279
B
GLY
280
n
253
GLY
280
B
SER
281
n
254
SER
281
B
ALA
282
n
255
ALA
282
B
LYS
283
n
256
LYS
283
B
CYS
284
n
257
CYS
284
B
SER
285
n
258
SER
285
B
GLY
286
n
259
GLY
286
B
SER
287
n
260
SER
287
B
GLY
288
n
261
GLY
288
B
LYS
289
n
262
LYS
289
B
PRO
290
n
263
PRO
290
B
VAL
291
n
264
VAL
291
B
ARG
292
n
265
ARG
292
B
SER
293
n
266
SER
293
B
ILE
294
n
267
ILE
294
B
ILE
295
n
268
ILE
295
B
CYS
296
n
269
CYS
296
B
PRO
297
n
270
PRO
297
B
THR
298
n
271
THR
298
B
THR
299
n
272
THR
299
B
n
273
300
B
n
274
301
B
n
275
302
B
n
276
303
B
n
277
304
B
n
278
305
B
n
279
306
B
4.9744
-0.8695
0.0517
0.7364
0.1478
1.1905
-0.0409
0.2176
0.0199
0.0020
0.0160
-0.0402
-0.1176
-0.1649
0.0249
-0.1729
-0.0692
0.0197
-0.2232
0.0270
-0.3040
refined
-36.7230
-4.8601
4.8004
X-RAY DIFFRACTION
1.4690
-1.8889
0.1447
4.5826
-0.7038
0.9260
-0.0098
0.1601
-0.0329
0.0413
-0.1223
-0.0506
-0.1929
0.1662
0.1321
-0.2527
-0.0341
-0.0085
-0.1493
0.0096
-0.3040
refined
-44.3195
-10.6522
30.6402
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A
X-RAY DIFFRACTION
2
CHAIN B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
ASN
80
GLYCOSYLATION SITE
A
ASN
53
ASN
A
ASN
140
GLYCOSYLATION SITE
A
ASN
113
ASN
B
ASN
80
GLYCOSYLATION SITE
B
ASN
53
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
48
A
N
ILE
21
A
O
GLU
51
A
O
GLU
24
A
N
CYS
56
A
N
CYS
29
A
O
PHE
65
A
O
PHE
38
A
N
GLN
70
A
N
GLN
43
A
O
TYR
74
A
O
TYR
47
A
N
VAL
75
A
N
VAL
48
A
O
ARG
101
A
O
ARG
74
A
N
VAL
102
A
N
VAL
75
A
O
THR
129
A
O
THR
102
A
N
LEU
130
A
N
LEU
103
A
O
ARG
154
A
O
ARG
127
A
N
PHE
155
A
N
PHE
128
A
O
HIS
178
A
O
HIS
151
A
N
LEU
179
A
N
LEU
152
A
O
SER
201
A
O
SER
174
A
N
ILE
202
A
N
ILE
175
A
O
GLN
225
A
O
GLN
198
A
N
LEU
226
A
N
LEU
199
A
O
LYS
249
A
O
LYS
222
A
O
GLY
97
A
O
GLY
70
A
N
VAL
125
A
N
VAL
98
B
N
ILE
48
B
N
ILE
21
B
O
GLU
51
B
O
GLU
24
B
N
CYS
56
B
N
CYS
29
B
O
PHE
65
B
O
PHE
38
B
N
GLN
70
B
N
GLN
43
B
O
TYR
74
B
O
TYR
47
B
N
VAL
75
B
N
VAL
48
B
O
ARG
101
B
O
ARG
74
B
N
VAL
102
B
N
VAL
75
B
O
THR
129
B
O
THR
102
B
N
LEU
130
B
N
LEU
103
B
O
ARG
154
B
O
ARG
127
B
N
PHE
155
B
N
PHE
128
B
O
HIS
178
B
O
HIS
151
B
N
LEU
179
B
N
LEU
152
B
O
SER
201
B
O
SER
174
B
N
ILE
202
B
N
ILE
175
B
O
GLN
225
B
O
GLN
198
B
N
LEU
226
B
N
LEU
199
B
O
LYS
249
B
O
LYS
222
B
O
ILE
250
B
O
ILE
223
B
N
GLN
279
B
N
GLN
252
B
O
GLY
97
B
O
GLY
70
B
N
VAL
125
B
N
VAL
98
1
A
GLY
300
A
GLY
273
1
Y
1
A
GLU
301
A
GLU
274
1
Y
1
A
ASN
302
A
ASN
275
1
Y
1
A
LEU
303
A
LEU
276
1
Y
1
A
TYR
304
A
TYR
277
1
Y
1
A
PHE
305
A
PHE
278
1
Y
1
A
GLN
306
A
GLN
279
1
Y
1
B
GLY
300
B
GLY
273
1
Y
1
B
GLU
301
B
GLU
274
1
Y
1
B
ASN
302
B
ASN
275
1
Y
1
B
LEU
303
B
LEU
276
1
Y
1
B
TYR
304
B
TYR
277
1
Y
1
B
PHE
305
B
PHE
278
1
Y
1
B
GLN
306
B
GLN
279
1
Y
1
A
MET
49
58.02
-100.97
1
A
GLU
51
-119.19
-168.67
1
A
ASN
59
77.78
-1.87
1
A
ASP
73
-122.42
-65.30
1
A
ASN
80
-153.80
77.59
1
A
LYS
93
55.10
15.65
1
A
SER
126
38.56
69.70
1
A
ASP
172
73.00
-11.81
1
A
ALA
183
-148.82
24.45
1
A
HIS
191
-98.57
36.33
1
A
LEU
196
-140.96
51.82
1
A
PHE
217
-109.02
47.46
1
A
ASN
231
-101.23
-156.72
1
B
MET
49
67.10
-106.88
1
B
ASP
73
-139.26
-71.62
1
B
ASN
80
-153.20
75.04
1
B
SER
126
32.34
71.40
1
B
SER
134
-163.08
116.71
1
B
ASN
136
-118.24
78.18
1
B
ARG
182
-117.61
70.05
1
B
HIS
191
-99.87
41.95
1
B
ASN
207
-102.25
-162.27
1
B
PHE
217
-114.90
53.81
1
B
ASN
231
-106.64
-164.20
64.40
-4.6490
0.0000
0.0000
-4.6490
0.0000
9.2979
0.8909
0.8391
RESIDUES 300-304 ARE DISORDERED. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY
0.2539
0.2242
0.2257
3.00
46.70
918
17997
5.10
99.90
2.408
RANDOM
1
THROUGHOUT
0.0
SAD
0.375
0.375
NONE
0.467
3.00
46.70
0
4414
74
0
4340
0.007
4513
HARMONIC
2.00
0.93
6114
HARMONIC
2.00
2157
SINUSOIDAL
2.00
114
HARMONIC
2.00
667
HARMONIC
5.00
4513
HARMONIC
20.00
2.20
3.24
607
SEMIHARMONIC
5.00
4999
SEMIHARMONIC
4.00
0.2802
0.2540
0.2556
3.18
166
2666
2832
9
5.86
99.90
79.11
3.00
47.40
4ARR
31669
3.0
0.14
1
14.10
13.0
99.9
0.65
3.00
3.16
3.40
1
12.0
100.0
refinement
BUSTER
2.10.0
data reduction
XDS
data scaling
SCALA
phasing
PHENIX
TOLL RECEPTOR, VARIABLE LYMPHOCYTE RECEPTOR B.61 CHIMERA
Crystal structure of the N-terminal domain of Drosophila Toll receptor with the magic triangle I3C
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
2
N
N
3
N
N
A
GLY
30
A
GLY
3
HELX_P
A
GLY
41
A
GLY
14
1
1
12
A
ASP
83
A
ASP
56
HELX_P
A
LEU
90
A
LEU
63
5
2
8
A
ILE
115
A
ILE
88
HELX_P
A
LEU
122
A
LEU
95
1
3
8
A
THR
142
A
THR
115
HELX_P
A
ASP
147
A
ASP
120
5
4
6
A
ILE
264
A
ILE
237
HELX_P
A
ASN
274
A
ASN
247
1
5
11
A
VAL
291
A
VAL
264
HELX_P
A
ILE
294
A
ILE
267
5
6
4
B
GLY
30
B
GLY
3
HELX_P
B
GLY
41
B
GLY
14
1
7
12
B
ASP
83
B
ASP
56
HELX_P
B
LEU
90
B
LEU
63
5
8
8
B
ILE
115
B
ILE
88
HELX_P
B
LEU
122
B
LEU
95
1
9
8
B
ARG
143
B
ARG
116
HELX_P
B
ASP
147
B
ASP
120
5
10
5
B
PRO
166
B
PRO
139
HELX_P
B
THR
171
B
THR
144
5
11
6
B
ILE
264
B
ILE
237
HELX_P
B
ASN
274
B
ASN
247
1
12
11
B
VAL
291
B
VAL
264
HELX_P
B
ILE
294
B
ILE
267
5
13
4
disulf
2.031
A
CYS
34
A
SG
CYS
7
1_555
A
CYS
45
A
SG
CYS
18
1_555
disulf
2.032
A
CYS
43
A
SG
CYS
16
1_555
A
CYS
56
A
SG
CYS
29
1_555
disulf
2.033
A
CYS
79
A
SG
CYS
52
1_555
A
CYS
107
A
SG
CYS
80
1_555
disulf
2.026
A
CYS
259
A
SG
CYS
232
1_555
A
CYS
284
A
SG
CYS
257
1_555
disulf
2.033
A
CYS
261
A
SG
CYS
234
1_555
A
CYS
296
A
SG
CYS
269
1_555
disulf
2.037
B
CYS
34
B
SG
CYS
7
1_555
B
CYS
45
B
SG
CYS
18
1_555
disulf
2.032
B
CYS
43
B
SG
CYS
16
1_555
B
CYS
56
B
SG
CYS
29
1_555
disulf
2.032
B
CYS
79
B
SG
CYS
52
1_555
B
CYS
107
B
SG
CYS
80
1_555
disulf
2.031
B
CYS
259
B
SG
CYS
232
1_555
B
CYS
284
B
SG
CYS
257
1_555
disulf
2.033
B
CYS
261
B
SG
CYS
234
1_555
B
CYS
296
B
SG
CYS
269
1_555
covale
1.434
one
N-Glycosylation
A
ASN
80
A
ND2
ASN
53
1_555
A
NAG
401
C
C1
NAG
1_555
covale
1.433
one
N-Glycosylation
A
ASN
140
A
ND2
ASN
113
1_555
A
NAG
501
D
C1
NAG
1_555
covale
1.433
one
N-Glycosylation
B
ASN
80
B
ND2
ASN
53
1_555
B
NAG
401
F
C1
NAG
1_555
IMMUNE SYSTEM
IMMUNE SYSTEM, CYTOKINE RECEPTOR, EMBRYONIC DEVELOPMENT, INNATE IMMUNITY, LEUCINE-RICH REPEAT, LRR HYBRID TECHNOLOGY
A
CYS
56
A
CYS
29
1
A
PRO
57
A
PRO
30
-3.87
A
CYS
261
A
CYS
234
1
A
PRO
262
A
PRO
235
2.59
B
CYS
56
B
CYS
29
1
B
PRO
57
B
PRO
30
-1.62
B
CYS
261
B
CYS
234
1
B
PRO
262
B
PRO
235
6.82
TOLL_DROME
UNP
1
P08953
Q4G1L2_EPTBU
UNP
1
Q4G1L2
28
228
4ARR
28
228
P08953
A
1
1
201
133
201
4ARR
231
299
Q4G1L2
A
2
204
272
28
228
4ARR
28
228
P08953
B
1
1
201
133
201
4ARR
231
299
Q4G1L2
B
2
204
272
1
cloning artifact
ALA
229
4ARR
A
P08953
UNP
202
1
cloning artifact
SER
230
4ARR
A
P08953
UNP
203
1
expression tag
GLY
300
4ARR
A
P08953
UNP
273
1
expression tag
GLU
301
4ARR
A
P08953
UNP
274
1
expression tag
ASN
302
4ARR
A
P08953
UNP
275
1
expression tag
LEU
303
4ARR
A
P08953
UNP
276
1
expression tag
TYR
304
4ARR
A
P08953
UNP
277
1
expression tag
PHE
305
4ARR
A
P08953
UNP
278
1
expression tag
GLN
306
4ARR
A
P08953
UNP
279
3
cloning artifact
ALA
229
4ARR
B
P08953
UNP
202
3
cloning artifact
SER
230
4ARR
B
P08953
UNP
203
3
expression tag
GLY
300
4ARR
B
P08953
UNP
273
3
expression tag
GLU
301
4ARR
B
P08953
UNP
274
3
expression tag
ASN
302
4ARR
B
P08953
UNP
275
3
expression tag
LEU
303
4ARR
B
P08953
UNP
276
3
expression tag
TYR
304
4ARR
B
P08953
UNP
277
3
expression tag
PHE
305
4ARR
B
P08953
UNP
278
3
expression tag
GLN
306
4ARR
B
P08953
UNP
279
11
2
12
2
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
GLN
44
A
GLN
17
A
ILE
48
A
ILE
21
A
GLU
51
A
GLU
24
A
CYS
56
A
CYS
29
A
PHE
65
A
PHE
38
A
GLN
70
A
GLN
43
A
TYR
74
A
TYR
47
A
CYS
79
A
CYS
52
A
ARG
101
A
ARG
74
A
ARG
105
A
ARG
78
A
THR
129
A
THR
102
A
GLU
133
A
GLU
106
A
ARG
154
A
ARG
127
A
THR
158
A
THR
131
A
HIS
178
A
HIS
151
A
ARG
182
A
ARG
155
A
SER
201
A
SER
174
A
GLU
203
A
GLU
176
A
GLN
225
A
GLN
198
A
ASN
227
A
ASN
200
A
LYS
249
A
LYS
222
A
TRP
251
A
TRP
224
A
GLY
97
A
GLY
70
A
GLU
98
A
GLU
71
A
ILE
124
A
ILE
97
A
VAL
125
A
VAL
98
B
GLN
44
B
GLN
17
B
ILE
48
B
ILE
21
B
GLU
51
B
GLU
24
B
CYS
56
B
CYS
29
B
PHE
65
B
PHE
38
B
GLN
70
B
GLN
43
B
TYR
74
B
TYR
47
B
CYS
79
B
CYS
52
B
ARG
101
B
ARG
74
B
ARG
105
B
ARG
78
B
THR
129
B
THR
102
B
GLU
133
B
GLU
106
B
ARG
154
B
ARG
127
B
THR
158
B
THR
131
B
HIS
178
B
HIS
151
B
ARG
182
B
ARG
155
B
SER
201
B
SER
174
B
GLU
203
B
GLU
176
B
GLN
225
B
GLN
198
B
ASN
227
B
ASN
200
B
LYS
249
B
LYS
222
B
TRP
251
B
TRP
224
B
GLU
278
B
GLU
251
B
GLN
279
B
GLN
252
B
GLY
97
B
GLY
70
B
GLU
98
B
GLU
71
B
ILE
124
B
ILE
97
B
VAL
125
B
VAL
98
96
P 43 21 2