0.006866
0.000000
0.001029
0.000000
0.023436
0.000000
0.000000
0.000000
0.021825
0.00000
0.00000
0.00000
Schulze, J.O.
Busschots, K.
Lopez-Garcia, L.A.
Lammi, C.
Stroba, A.
Zeuzem, S.
Piiper, A.
Alzari, P.M.
Neimanis, S.
Arencibia, J.M.
Engel, M.
Biondi, R.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
98.52
90.00
145.650
42.670
46.330
C19 H15 F3 O5
380.315
{(1R)-3-oxo-1-phenyl-3-[4-(trifluoromethyl)phenyl]propyl}propanedioic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
O
N
7
N
O
N
8
R
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
N
15
N
C
N
16
N
C
N
17
N
O
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
N
22
N
C
N
23
N
F
N
24
N
F
N
25
N
F
Y
26
N
C
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
R
P
N
121
N
O
N
122
N
O
N
123
N
O
N
124
R
P
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
R
C
N
135
N
O
N
136
R
C
Y
137
N
N
Y
138
N
C
Y
139
N
N
Y
140
N
C
Y
141
N
C
N
142
N
N
Y
143
N
N
Y
144
N
C
Y
145
N
N
Y
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
CL
N
164
N
N
N
165
R
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
S
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
S
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
O
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
N
Y
244
N
C
Y
245
N
C
Y
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
S
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
N
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
S
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
MN
N
351
N
NA
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
O
N
399
N
P
N
400
N
O
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
O
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
R
C
N
430
N
O
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
N
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
N
480
N
O
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
N
N
494
S
C
N
495
N
C
N
496
N
O
N
497
N
C
N
498
N
C
N
499
N
C
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
Y
10
N
sing
Y
11
N
doub
Y
12
N
doub
Y
13
N
sing
Y
14
N
doub
Y
15
N
sing
N
16
N
sing
N
17
N
doub
N
18
N
sing
Y
19
N
sing
Y
20
N
doub
Y
21
N
doub
Y
22
N
sing
N
23
N
sing
Y
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
Y
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
Y
147
N
sing
Y
148
N
sing
Y
149
N
doub
N
150
N
sing
Y
151
N
sing
Y
152
N
sing
Y
153
N
doub
N
154
N
sing
Y
155
N
doub
N
156
N
sing
N
157
N
sing
Y
158
N
sing
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
sing
Y
242
N
doub
Y
243
N
doub
N
244
N
sing
Y
245
N
sing
N
246
N
sing
Y
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
Y
442
N
sing
N
443
N
sing
Y
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
UK
Chem.Biol.
CBOLE2
2050
1074-5521
19
1152
10.1016/J.CHEMBIOL.2012.07.017
22999883
Substrate-Selective Inhibition of Protein Kinase Pdk1 by Small Compounds that Bind to the Pif-Pocket Allosteric Docking Site.
2012
10.2210/pdb4aw1/pdb
pdb_00004aw1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2010-12-03
MARRESEARCH
SI-111 CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.91841
1.0
14.1
BESSY
0.91841
SYNCHROTRON
BESSY BEAMLINE 14.1
PHOSPHORYLATION AT S241
35392.566
3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1
2.7.11.1
CATALYTIC DOMAIN, RESIDUES 51-359
YES
1
man
polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
380.315
{(1R)-3-oxo-1-phenyl-3-[4-(trifluoromethyl)phenyl]propyl}propanedioic acid
1
syn
non-polymer
78.133
DIMETHYL SULFOXIDE
2
syn
non-polymer
54.938
MANGANESE (II) ION
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
35.453
CHLORIDE ION
3
syn
non-polymer
18.015
water
145
nat
water
HPDK1
no
yes
GAMDGTAAEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVT
RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKP
ENILLNEDMHIQITDFGTAKVLSPESKQARAN(SEP)FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA
GNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
GAMDGTAAEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVT
RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKP
ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG
LIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
FALL ARMYWORM
sample
9606
HOMO SAPIENS
SF9
7108
SPODOPTERA FRUGIPERDA
BACULOVIRUS
PFASTBAC
1
2.3
47
NONE
7.5
1.2 M NA CITRATE, 0.1 M HEPES PH 7.5, 0.01 M DTT
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Derived calculations
Other
Structure summary
Atomic model
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2012-10-03
1
1
2012-10-10
2
0
2023-12-20
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1,3,4,5)-TETRAKISPHOSPHATE
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO DIC4-PHOSPHATIDYLINOSITOL (3,4,5)- TRISPHOSPHATE
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN
CRYSTAL STRUCTURE OF N1-[3-[[5-BROMO-2-[[3-[(1- PYRROLIDINYLCARBONYL)AMINO]PHENYL]AMINO]-4-PYRIMIDINYL] AMINO]PROPYL]-2,2-DIMETHYLPROPANEDIAMIDECOMPLEXED WITH HUMAN PDK1
STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN
STRUCTURE OF THE PDK1 PH DOMAIN K465E MUTANT
CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR
CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR
HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH ALLOSTERIC ACTIVATOR PS114 BOUND TO THE PIF-POCKET
HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH ALLOSTERIC ACTIVATOR PS171 BOUND TO THE PIF-POCKET
HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH ALLOSTERIC COMPOUND PS182 BOUND TO THE PIF-POCKET
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
2012-05-30
REL
REL
ATP
ADENOSINE-5'-TRIPHOSPHATE
21O
{(1R)-3-oxo-1-phenyl-3-[4-(trifluoromethyl)phenyl]propyl}propanedioic acid
DMS
DIMETHYL SULFOXIDE
MN
MANGANESE (II) ION
NA
SODIUM ION
CL
CHLORIDE ION
HOH
water
ENGINEERED RESIDUE IN CHAIN A, TYR 238 TO GLY
ENGINEERED RESIDUE IN CHAIN A, GLN 242 TO ALA
3HRC
PDB ENTRY 3HRC
PDB
experimental model
ATP
1360
2
ATP
ATP
1360
A
21O
1361
3
21O
21O
1361
A
DMS
1362
4
DMS
DMS
1362
A
DMS
1363
4
DMS
DMS
1363
A
MN
1364
5
MN
MN
1364
A
NA
1365
6
NA
NA
1365
A
NA
1366
6
NA
NA
1366
A
CL
1367
7
CL
CL
1367
A
CL
1368
7
CL
CL
1368
A
CL
1369
7
CL
CL
1369
A
HOH
2001
8
HOH
HOH
2001
A
HOH
2002
8
HOH
HOH
2002
A
HOH
2003
8
HOH
HOH
2003
A
HOH
2004
8
HOH
HOH
2004
A
HOH
2005
8
HOH
HOH
2005
A
HOH
2006
8
HOH
HOH
2006
A
HOH
2007
8
HOH
HOH
2007
A
HOH
2008
8
HOH
HOH
2008
A
HOH
2009
8
HOH
HOH
2009
A
HOH
2010
8
HOH
HOH
2010
A
HOH
2011
8
HOH
HOH
2011
A
HOH
2012
8
HOH
HOH
2012
A
HOH
2013
8
HOH
HOH
2013
A
HOH
2014
8
HOH
HOH
2014
A
HOH
2015
8
HOH
HOH
2015
A
HOH
2016
8
HOH
HOH
2016
A
HOH
2017
8
HOH
HOH
2017
A
HOH
2018
8
HOH
HOH
2018
A
HOH
2019
8
HOH
HOH
2019
A
HOH
2020
8
HOH
HOH
2020
A
HOH
2021
8
HOH
HOH
2021
A
HOH
2022
8
HOH
HOH
2022
A
HOH
2023
8
HOH
HOH
2023
A
HOH
2024
8
HOH
HOH
2024
A
HOH
2025
8
HOH
HOH
2025
A
HOH
2026
8
HOH
HOH
2026
A
HOH
2027
8
HOH
HOH
2027
A
HOH
2028
8
HOH
HOH
2028
A
HOH
2029
8
HOH
HOH
2029
A
HOH
2030
8
HOH
HOH
2030
A
HOH
2031
8
HOH
HOH
2031
A
HOH
2032
8
HOH
HOH
2032
A
HOH
2033
8
HOH
HOH
2033
A
HOH
2034
8
HOH
HOH
2034
A
HOH
2035
8
HOH
HOH
2035
A
HOH
2036
8
HOH
HOH
2036
A
HOH
2037
8
HOH
HOH
2037
A
HOH
2038
8
HOH
HOH
2038
A
HOH
2039
8
HOH
HOH
2039
A
HOH
2040
8
HOH
HOH
2040
A
HOH
2041
8
HOH
HOH
2041
A
HOH
2042
8
HOH
HOH
2042
A
HOH
2043
8
HOH
HOH
2043
A
HOH
2044
8
HOH
HOH
2044
A
HOH
2045
8
HOH
HOH
2045
A
HOH
2046
8
HOH
HOH
2046
A
HOH
2047
8
HOH
HOH
2047
A
HOH
2048
8
HOH
HOH
2048
A
HOH
2049
8
HOH
HOH
2049
A
HOH
2050
8
HOH
HOH
2050
A
HOH
2051
8
HOH
HOH
2051
A
HOH
2052
8
HOH
HOH
2052
A
HOH
2053
8
HOH
HOH
2053
A
HOH
2054
8
HOH
HOH
2054
A
HOH
2055
8
HOH
HOH
2055
A
HOH
2056
8
HOH
HOH
2056
A
HOH
2057
8
HOH
HOH
2057
A
HOH
2058
8
HOH
HOH
2058
A
HOH
2059
8
HOH
HOH
2059
A
HOH
2060
8
HOH
HOH
2060
A
HOH
2061
8
HOH
HOH
2061
A
HOH
2062
8
HOH
HOH
2062
A
HOH
2063
8
HOH
HOH
2063
A
HOH
2064
8
HOH
HOH
2064
A
HOH
2065
8
HOH
HOH
2065
A
HOH
2066
8
HOH
HOH
2066
A
HOH
2067
8
HOH
HOH
2067
A
HOH
2068
8
HOH
HOH
2068
A
HOH
2069
8
HOH
HOH
2069
A
HOH
2070
8
HOH
HOH
2070
A
HOH
2071
8
HOH
HOH
2071
A
HOH
2072
8
HOH
HOH
2072
A
HOH
2073
8
HOH
HOH
2073
A
HOH
2074
8
HOH
HOH
2074
A
HOH
2075
8
HOH
HOH
2075
A
HOH
2076
8
HOH
HOH
2076
A
HOH
2077
8
HOH
HOH
2077
A
HOH
2078
8
HOH
HOH
2078
A
HOH
2079
8
HOH
HOH
2079
A
HOH
2080
8
HOH
HOH
2080
A
HOH
2081
8
HOH
HOH
2081
A
HOH
2082
8
HOH
HOH
2082
A
HOH
2083
8
HOH
HOH
2083
A
HOH
2084
8
HOH
HOH
2084
A
HOH
2085
8
HOH
HOH
2085
A
HOH
2086
8
HOH
HOH
2086
A
HOH
2087
8
HOH
HOH
2087
A
HOH
2088
8
HOH
HOH
2088
A
HOH
2089
8
HOH
HOH
2089
A
HOH
2090
8
HOH
HOH
2090
A
HOH
2091
8
HOH
HOH
2091
A
HOH
2092
8
HOH
HOH
2092
A
HOH
2093
8
HOH
HOH
2093
A
HOH
2094
8
HOH
HOH
2094
A
HOH
2095
8
HOH
HOH
2095
A
HOH
2096
8
HOH
HOH
2096
A
HOH
2097
8
HOH
HOH
2097
A
HOH
2098
8
HOH
HOH
2098
A
HOH
2099
8
HOH
HOH
2099
A
HOH
2100
8
HOH
HOH
2100
A
HOH
2101
8
HOH
HOH
2101
A
HOH
2102
8
HOH
HOH
2102
A
HOH
2103
8
HOH
HOH
2103
A
HOH
2104
8
HOH
HOH
2104
A
HOH
2105
8
HOH
HOH
2105
A
HOH
2106
8
HOH
HOH
2106
A
HOH
2107
8
HOH
HOH
2107
A
HOH
2108
8
HOH
HOH
2108
A
HOH
2109
8
HOH
HOH
2109
A
HOH
2110
8
HOH
HOH
2110
A
HOH
2111
8
HOH
HOH
2111
A
HOH
2112
8
HOH
HOH
2112
A
HOH
2113
8
HOH
HOH
2113
A
HOH
2114
8
HOH
HOH
2114
A
HOH
2115
8
HOH
HOH
2115
A
HOH
2116
8
HOH
HOH
2116
A
HOH
2117
8
HOH
HOH
2117
A
HOH
2118
8
HOH
HOH
2118
A
HOH
2119
8
HOH
HOH
2119
A
HOH
2120
8
HOH
HOH
2120
A
HOH
2121
8
HOH
HOH
2121
A
HOH
2122
8
HOH
HOH
2122
A
HOH
2123
8
HOH
HOH
2123
A
HOH
2124
8
HOH
HOH
2124
A
HOH
2125
8
HOH
HOH
2125
A
HOH
2126
8
HOH
HOH
2126
A
HOH
2127
8
HOH
HOH
2127
A
HOH
2128
8
HOH
HOH
2128
A
HOH
2129
8
HOH
HOH
2129
A
HOH
2130
8
HOH
HOH
2130
A
HOH
2131
8
HOH
HOH
2131
A
HOH
2132
8
HOH
HOH
2132
A
HOH
2133
8
HOH
HOH
2133
A
HOH
2134
8
HOH
HOH
2134
A
HOH
2135
8
HOH
HOH
2135
A
HOH
2136
8
HOH
HOH
2136
A
HOH
2137
8
HOH
HOH
2137
A
HOH
2138
8
HOH
HOH
2138
A
HOH
2139
8
HOH
HOH
2139
A
HOH
2140
8
HOH
HOH
2140
A
HOH
2141
8
HOH
HOH
2141
A
HOH
2142
8
HOH
HOH
2142
A
HOH
2143
8
HOH
HOH
2143
A
HOH
2144
8
HOH
HOH
2144
A
HOH
2145
8
HOH
HOH
2145
A
n
1
49
A
n
2
50
A
n
3
51
A
n
4
52
A
n
5
53
A
n
6
54
A
n
7
55
A
n
8
56
A
n
9
57
A
n
10
58
A
n
11
59
A
n
12
60
A
n
13
61
A
n
14
62
A
n
15
63
A
n
16
64
A
n
17
65
A
GLN
66
n
18
GLN
66
A
HIS
67
n
19
HIS
67
A
ALA
68
n
20
ALA
68
A
GLN
69
n
21
GLN
69
A
PRO
70
n
22
PRO
70
A
PRO
71
n
23
PRO
71
A
PRO
72
n
24
PRO
72
A
n
25
73
A
n
26
74
A
ARG
75
n
27
ARG
75
A
LYS
76
n
28
LYS
76
A
LYS
77
n
29
LYS
77
A
ARG
78
n
30
ARG
78
A
PRO
79
n
31
PRO
79
A
GLU
80
n
32
GLU
80
A
ASP
81
n
33
ASP
81
A
PHE
82
n
34
PHE
82
A
LYS
83
n
35
LYS
83
A
PHE
84
n
36
PHE
84
A
GLY
85
n
37
GLY
85
A
LYS
86
n
38
LYS
86
A
ILE
87
n
39
ILE
87
A
LEU
88
n
40
LEU
88
A
GLY
89
n
41
GLY
89
A
GLU
90
n
42
GLU
90
A
GLY
91
n
43
GLY
91
A
SER
92
n
44
SER
92
A
PHE
93
n
45
PHE
93
A
SER
94
n
46
SER
94
A
THR
95
n
47
THR
95
A
VAL
96
n
48
VAL
96
A
VAL
97
n
49
VAL
97
A
LEU
98
n
50
LEU
98
A
ALA
99
n
51
ALA
99
A
ARG
100
n
52
ARG
100
A
GLU
101
n
53
GLU
101
A
LEU
102
n
54
LEU
102
A
ALA
103
n
55
ALA
103
A
THR
104
n
56
THR
104
A
SER
105
n
57
SER
105
A
ARG
106
n
58
ARG
106
A
GLU
107
n
59
GLU
107
A
TYR
108
n
60
TYR
108
A
ALA
109
n
61
ALA
109
A
ILE
110
n
62
ILE
110
A
LYS
111
n
63
LYS
111
A
ILE
112
n
64
ILE
112
A
LEU
113
n
65
LEU
113
A
GLU
114
n
66
GLU
114
A
LYS
115
n
67
LYS
115
A
ARG
116
n
68
ARG
116
A
HIS
117
n
69
HIS
117
A
ILE
118
n
70
ILE
118
A
ILE
119
n
71
ILE
119
A
LYS
120
n
72
LYS
120
A
GLU
121
n
73
GLU
121
A
ASN
122
n
74
ASN
122
A
LYS
123
n
75
LYS
123
A
VAL
124
n
76
VAL
124
A
PRO
125
n
77
PRO
125
A
TYR
126
n
78
TYR
126
A
VAL
127
n
79
VAL
127
A
THR
128
n
80
THR
128
A
ARG
129
n
81
ARG
129
A
GLU
130
n
82
GLU
130
A
ARG
131
n
83
ARG
131
A
ASP
132
n
84
ASP
132
A
VAL
133
n
85
VAL
133
A
MET
134
n
86
MET
134
A
SER
135
n
87
SER
135
A
ARG
136
n
88
ARG
136
A
LEU
137
n
89
LEU
137
A
ASP
138
n
90
ASP
138
A
HIS
139
n
91
HIS
139
A
PRO
140
n
92
PRO
140
A
PHE
141
n
93
PHE
141
A
PHE
142
n
94
PHE
142
A
VAL
143
n
95
VAL
143
A
LYS
144
n
96
LYS
144
A
LEU
145
n
97
LEU
145
A
TYR
146
n
98
TYR
146
A
PHE
147
n
99
PHE
147
A
THR
148
n
100
THR
148
A
PHE
149
n
101
PHE
149
A
GLN
150
n
102
GLN
150
A
ASP
151
n
103
ASP
151
A
ASP
152
n
104
ASP
152
A
GLU
153
n
105
GLU
153
A
LYS
154
n
106
LYS
154
A
LEU
155
n
107
LEU
155
A
TYR
156
n
108
TYR
156
A
PHE
157
n
109
PHE
157
A
GLY
158
n
110
GLY
158
A
LEU
159
n
111
LEU
159
A
SER
160
n
112
SER
160
A
TYR
161
n
113
TYR
161
A
ALA
162
n
114
ALA
162
A
LYS
163
n
115
LYS
163
A
ASN
164
n
116
ASN
164
A
GLY
165
n
117
GLY
165
A
GLU
166
n
118
GLU
166
A
LEU
167
n
119
LEU
167
A
LEU
168
n
120
LEU
168
A
LYS
169
n
121
LYS
169
A
TYR
170
n
122
TYR
170
A
ILE
171
n
123
ILE
171
A
ARG
172
n
124
ARG
172
A
LYS
173
n
125
LYS
173
A
ILE
174
n
126
ILE
174
A
GLY
175
n
127
GLY
175
A
SER
176
n
128
SER
176
A
PHE
177
n
129
PHE
177
A
ASP
178
n
130
ASP
178
A
GLU
179
n
131
GLU
179
A
THR
180
n
132
THR
180
A
CYS
181
n
133
CYS
181
A
THR
182
n
134
THR
182
A
ARG
183
n
135
ARG
183
A
PHE
184
n
136
PHE
184
A
TYR
185
n
137
TYR
185
A
THR
186
n
138
THR
186
A
ALA
187
n
139
ALA
187
A
GLU
188
n
140
GLU
188
A
ILE
189
n
141
ILE
189
A
VAL
190
n
142
VAL
190
A
SER
191
n
143
SER
191
A
ALA
192
n
144
ALA
192
A
LEU
193
n
145
LEU
193
A
GLU
194
n
146
GLU
194
A
TYR
195
n
147
TYR
195
A
LEU
196
n
148
LEU
196
A
HIS
197
n
149
HIS
197
A
GLY
198
n
150
GLY
198
A
LYS
199
n
151
LYS
199
A
GLY
200
n
152
GLY
200
A
ILE
201
n
153
ILE
201
A
ILE
202
n
154
ILE
202
A
HIS
203
n
155
HIS
203
A
ARG
204
n
156
ARG
204
A
ASP
205
n
157
ASP
205
A
LEU
206
n
158
LEU
206
A
LYS
207
n
159
LYS
207
A
PRO
208
n
160
PRO
208
A
GLU
209
n
161
GLU
209
A
ASN
210
n
162
ASN
210
A
ILE
211
n
163
ILE
211
A
LEU
212
n
164
LEU
212
A
LEU
213
n
165
LEU
213
A
ASN
214
n
166
ASN
214
A
GLU
215
n
167
GLU
215
A
ASP
216
n
168
ASP
216
A
MET
217
n
169
MET
217
A
HIS
218
n
170
HIS
218
A
ILE
219
n
171
ILE
219
A
GLN
220
n
172
GLN
220
A
ILE
221
n
173
ILE
221
A
THR
222
n
174
THR
222
A
ASP
223
n
175
ASP
223
A
PHE
224
n
176
PHE
224
A
GLY
225
n
177
GLY
225
A
THR
226
n
178
THR
226
A
ALA
227
n
179
ALA
227
A
LYS
228
n
180
LYS
228
A
VAL
229
n
181
VAL
229
A
LEU
230
n
182
LEU
230
A
SER
231
n
183
SER
231
A
n
184
232
A
n
185
233
A
n
186
234
A
n
187
235
A
n
188
236
A
ALA
237
n
189
ALA
237
A
ARG
238
n
190
ARG
238
A
ALA
239
n
191
ALA
239
A
ASN
240
n
192
ASN
240
A
SEP
241
n
193
SEP
241
A
PHE
242
n
194
PHE
242
A
VAL
243
n
195
VAL
243
A
GLY
244
n
196
GLY
244
A
THR
245
n
197
THR
245
A
ALA
246
n
198
ALA
246
A
GLN
247
n
199
GLN
247
A
TYR
248
n
200
TYR
248
A
VAL
249
n
201
VAL
249
A
SER
250
n
202
SER
250
A
PRO
251
n
203
PRO
251
A
GLU
252
n
204
GLU
252
A
LEU
253
n
205
LEU
253
A
LEU
254
n
206
LEU
254
A
THR
255
n
207
THR
255
A
GLU
256
n
208
GLU
256
A
LYS
257
n
209
LYS
257
A
SER
258
n
210
SER
258
A
ALA
259
n
211
ALA
259
A
CYS
260
n
212
CYS
260
A
LYS
261
n
213
LYS
261
A
SER
262
n
214
SER
262
A
SER
263
n
215
SER
263
A
ASP
264
n
216
ASP
264
A
LEU
265
n
217
LEU
265
A
TRP
266
n
218
TRP
266
A
ALA
267
n
219
ALA
267
A
LEU
268
n
220
LEU
268
A
GLY
269
n
221
GLY
269
A
CYS
270
n
222
CYS
270
A
ILE
271
n
223
ILE
271
A
ILE
272
n
224
ILE
272
A
TYR
273
n
225
TYR
273
A
GLN
274
n
226
GLN
274
A
LEU
275
n
227
LEU
275
A
VAL
276
n
228
VAL
276
A
ALA
277
n
229
ALA
277
A
GLY
278
n
230
GLY
278
A
LEU
279
n
231
LEU
279
A
PRO
280
n
232
PRO
280
A
PRO
281
n
233
PRO
281
A
PHE
282
n
234
PHE
282
A
ARG
283
n
235
ARG
283
A
ALA
284
n
236
ALA
284
A
GLY
285
n
237
GLY
285
A
ASN
286
n
238
ASN
286
A
GLU
287
n
239
GLU
287
A
GLY
288
n
240
GLY
288
A
LEU
289
n
241
LEU
289
A
ILE
290
n
242
ILE
290
A
PHE
291
n
243
PHE
291
A
ALA
292
n
244
ALA
292
A
LYS
293
n
245
LYS
293
A
ILE
294
n
246
ILE
294
A
ILE
295
n
247
ILE
295
A
LYS
296
n
248
LYS
296
A
LEU
297
n
249
LEU
297
A
GLU
298
n
250
GLU
298
A
TYR
299
n
251
TYR
299
A
ASP
300
n
252
ASP
300
A
PHE
301
n
253
PHE
301
A
PRO
302
n
254
PRO
302
A
GLU
303
n
255
GLU
303
A
LYS
304
n
256
LYS
304
A
PHE
305
n
257
PHE
305
A
PHE
306
n
258
PHE
306
A
PRO
307
n
259
PRO
307
A
LYS
308
n
260
LYS
308
A
ALA
309
n
261
ALA
309
A
ARG
310
n
262
ARG
310
A
ASP
311
n
263
ASP
311
A
LEU
312
n
264
LEU
312
A
VAL
313
n
265
VAL
313
A
GLU
314
n
266
GLU
314
A
LYS
315
n
267
LYS
315
A
LEU
316
n
268
LEU
316
A
LEU
317
n
269
LEU
317
A
VAL
318
n
270
VAL
318
A
LEU
319
n
271
LEU
319
A
ASP
320
n
272
ASP
320
A
ALA
321
n
273
ALA
321
A
THR
322
n
274
THR
322
A
LYS
323
n
275
LYS
323
A
ARG
324
n
276
ARG
324
A
LEU
325
n
277
LEU
325
A
GLY
326
n
278
GLY
326
A
CYS
327
n
279
CYS
327
A
GLU
328
n
280
GLU
328
A
GLU
329
n
281
GLU
329
A
MET
330
n
282
MET
330
A
GLU
331
n
283
GLU
331
A
GLY
332
n
284
GLY
332
A
TYR
333
n
285
TYR
333
A
GLY
334
n
286
GLY
334
A
PRO
335
n
287
PRO
335
A
LEU
336
n
288
LEU
336
A
LYS
337
n
289
LYS
337
A
ALA
338
n
290
ALA
338
A
HIS
339
n
291
HIS
339
A
PRO
340
n
292
PRO
340
A
PHE
341
n
293
PHE
341
A
PHE
342
n
294
PHE
342
A
GLU
343
n
295
GLU
343
A
SER
344
n
296
SER
344
A
VAL
345
n
297
VAL
345
A
THR
346
n
298
THR
346
A
TRP
347
n
299
TRP
347
A
GLU
348
n
300
GLU
348
A
ASN
349
n
301
ASN
349
A
LEU
350
n
302
LEU
350
A
HIS
351
n
303
HIS
351
A
GLN
352
n
304
GLN
352
A
GLN
353
n
305
GLN
353
A
THR
354
n
306
THR
354
A
PRO
355
n
307
PRO
355
A
PRO
356
n
308
PRO
356
A
LYS
357
n
309
LYS
357
A
LEU
358
n
310
LEU
358
A
THR
359
n
311
THR
359
A
0.9813
-0.1183
0.1906
1.4107
-0.0642
3.0734
-0.0635
0.0280
0.6863
0.1200
0.0312
0.1272
-0.3967
0.1108
0.1235
0.2151
0.0193
0.0122
0.2565
-0.0426
0.3111
refined
-4.8031
29.3081
-10.4603
X-RAY DIFFRACTION
3.1321
-1.5674
-1.0321
5.1424
0.6297
2.1043
0.1188
0.2348
-0.1242
-0.1327
-0.0684
0.2430
-0.1036
-0.1888
-0.0550
0.1221
0.0139
0.0016
0.2293
0.0325
0.0697
refined
-9.3476
25.2602
-13.8351
X-RAY DIFFRACTION
0.9973
0.8846
-0.8310
2.6033
-1.4525
2.5197
0.0329
0.0118
0.0832
0.0121
-0.0392
0.0619
-0.2176
-0.0422
0.0192
0.1108
0.0211
0.0007
0.1969
-0.0027
0.1550
refined
-13.7862
24.2033
-4.2346
X-RAY DIFFRACTION
3.4496
0.2801
0.1614
4.4985
0.8780
2.7196
-0.0324
-0.1396
-0.1847
0.1129
-0.0382
-0.1930
0.2365
0.0782
0.0962
0.0889
0.0163
0.0043
0.1519
0.0167
0.0891
refined
-16.2457
14.0380
10.8132
X-RAY DIFFRACTION
2.6908
0.1333
-0.2239
2.1836
-0.0667
1.7319
-0.0751
0.0907
0.2741
-0.0325
0.0124
0.2126
-0.1811
-0.1030
0.0391
0.0901
-0.0018
-0.0248
0.1078
0.0031
0.1050
refined
-23.7049
22.7752
4.9111
X-RAY DIFFRACTION
2.3007
-0.4541
1.5518
1.4037
0.0169
2.1658
-0.0494
-0.2176
-0.1048
0.1316
-0.0328
0.3787
0.1173
-0.2592
0.0297
0.1094
-0.0175
0.0554
0.1859
-0.0051
0.1753
refined
-31.9210
15.9739
12.6625
X-RAY DIFFRACTION
5.4422
-1.7921
-4.6456
3.8102
1.1249
4.6852
-0.0301
-0.3107
-0.3491
0.2270
-0.0172
-0.2841
0.2234
0.3958
-0.0027
0.1777
0.0546
-0.0535
0.1839
0.0150
0.1814
refined
-12.6878
7.9841
13.5599
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ 66:94)
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 95:120)
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 121:178)
X-RAY DIFFRACTION
4
CHAIN A AND (RESSEQ 179:198)
X-RAY DIFFRACTION
5
CHAIN A AND (RESSEQ 199:277)
X-RAY DIFFRACTION
6
CHAIN A AND (RESSEQ 278:337)
X-RAY DIFFRACTION
7
CHAIN A AND (RESSEQ 338:359)
software_defined_assembly
PISA
1
monomeric
A
SER
191
A
O
SER
143
1_555
A
NA
1366
H
NA
NA
1_555
A
GLU
194
A
OE1
GLU
146
1_555
108.2
A
SER
191
A
O
SER
143
1_555
A
NA
1366
H
NA
NA
1_555
A
HOH
2025
L
O
HOH
2_555
115.1
A
GLU
194
A
OE1
GLU
146
1_555
A
NA
1366
H
NA
NA
1_555
A
HOH
2025
L
O
HOH
2_555
100.2
A
SER
191
A
O
SER
143
1_555
A
NA
1366
H
NA
NA
1_555
A
HOH
2044
L
O
HOH
1_555
101.3
A
GLU
194
A
OE1
GLU
146
1_555
A
NA
1366
H
NA
NA
1_555
A
HOH
2044
L
O
HOH
1_555
139.5
A
HOH
2025
L
O
HOH
2_555
A
NA
1366
H
NA
NA
1_555
A
HOH
2044
L
O
HOH
1_555
91.5
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
A
ASP
223
A
OD2
ASP
175
1_555
93.2
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O1G
ATP
1_555
151.7
A
ASP
223
A
OD2
ASP
175
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O1G
ATP
1_555
72.6
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O3B
ATP
1_555
161.0
A
ASP
223
A
OD2
ASP
175
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O3B
ATP
1_555
99.2
A
ATP
1360
B
O1G
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O3B
ATP
1_555
47.1
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O1A
ATP
1_555
84.9
A
ASP
223
A
OD2
ASP
175
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O1A
ATP
1_555
106.8
A
ATP
1360
B
O1G
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O1A
ATP
1_555
122.2
A
ATP
1360
B
O3B
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
ATP
1360
B
O1A
ATP
1_555
77.8
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2088
L
O
HOH
1_555
101.2
A
ASP
223
A
OD2
ASP
175
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2088
L
O
HOH
1_555
84.6
A
ATP
1360
B
O1G
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2088
L
O
HOH
1_555
54.3
A
ATP
1360
B
O3B
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2088
L
O
HOH
1_555
94.3
A
ATP
1360
B
O1A
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2088
L
O
HOH
1_555
166.9
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2090
L
O
HOH
1_555
48.5
A
ASP
223
A
OD2
ASP
175
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2090
L
O
HOH
1_555
128.9
A
ATP
1360
B
O1G
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2090
L
O
HOH
1_555
156.4
A
ATP
1360
B
O3B
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2090
L
O
HOH
1_555
112.9
A
ATP
1360
B
O1A
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2090
L
O
HOH
1_555
48.4
A
HOH
2088
L
O
HOH
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2090
L
O
HOH
1_555
128.7
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
78.1
A
ASP
223
A
OD2
ASP
175
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
170.4
A
ATP
1360
B
O1G
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
113.5
A
ATP
1360
B
O3B
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
90.3
A
ATP
1360
B
O1A
ATP
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
76.7
A
HOH
2088
L
O
HOH
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
93.0
A
HOH
2090
L
O
HOH
1_555
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
46.9
A
ASP
223
A
OD2
ASP
175
1_555
A
MN
1364
F
MN
MN
1_555
A
ASP
223
A
OD1
ASP
175
1_555
54.7
A
ASP
223
A
OD2
ASP
175
1_555
A
MN
1364
F
MN
MN
1_555
A
ATP
1360
B
O1B
ATP
1_555
89.5
A
ASP
223
A
OD1
ASP
175
1_555
A
MN
1364
F
MN
MN
1_555
A
ATP
1360
B
O1B
ATP
1_555
80.9
A
ASP
223
A
OD2
ASP
175
1_555
A
MN
1364
F
MN
MN
1_555
A
ATP
1360
B
O1G
ATP
1_555
87.0
A
ASP
223
A
OD1
ASP
175
1_555
A
MN
1364
F
MN
MN
1_555
A
ATP
1360
B
O1G
ATP
1_555
140.0
A
ATP
1360
B
O1B
ATP
1_555
A
MN
1364
F
MN
MN
1_555
A
ATP
1360
B
O1G
ATP
1_555
88.4
A
SEP
241
PHOSPHOSERINE
A
SEP
193
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
85
A
N
GLY
37
A
O
LEU
98
A
O
LEU
50
A
N
VAL
97
A
N
VAL
49
A
O
ILE
110
A
O
ILE
62
A
N
ALA
109
A
N
ALA
61
A
O
LEU
159
A
O
LEU
111
A
O
GLY
158
A
O
GLY
110
A
N
PHE
147
A
N
PHE
99
A
N
GLY
165
A
N
GLY
117
A
O
LEU
213
A
O
LEU
165
A
N
LEU
212
A
N
LEU
164
A
O
GLN
220
A
O
GLN
172
A
N
ILE
202
A
N
ILE
154
A
O
LYS
228
A
O
LYS
180
1
A
CA
PRO
72
A
CA
PRO
24
1
Y
1
A
C
PRO
72
A
C
PRO
24
1
Y
1
A
O
PRO
72
A
O
PRO
24
1
Y
1
A
CB
PRO
72
A
CB
PRO
24
1
Y
1
A
CG
PRO
72
A
CG
PRO
24
1
Y
1
A
CD
PRO
72
A
CD
PRO
24
1
Y
1
A
CG
ARG
75
A
CG
ARG
27
1
Y
1
A
CD
ARG
75
A
CD
ARG
27
1
Y
1
A
NE
ARG
75
A
NE
ARG
27
1
Y
1
A
CZ
ARG
75
A
CZ
ARG
27
1
Y
1
A
NH1
ARG
75
A
NH1
ARG
27
1
Y
1
A
NH2
ARG
75
A
NH2
ARG
27
1
Y
1
A
CD
LYS
83
A
CD
LYS
35
1
Y
1
A
CE
LYS
83
A
CE
LYS
35
1
Y
1
A
NZ
LYS
83
A
NZ
LYS
35
1
Y
1
A
CE
LYS
86
A
CE
LYS
38
1
Y
1
A
NZ
LYS
86
A
NZ
LYS
38
1
Y
1
A
CG
ARG
116
A
CG
ARG
68
1
Y
1
A
CD
ARG
116
A
CD
ARG
68
1
Y
1
A
NE
ARG
116
A
NE
ARG
68
1
Y
1
A
CZ
ARG
116
A
CZ
ARG
68
1
Y
1
A
NH1
ARG
116
A
NH1
ARG
68
1
Y
1
A
NH2
ARG
116
A
NH2
ARG
68
1
Y
1
A
CD
LYS
120
A
CD
LYS
72
1
Y
1
A
CE
LYS
120
A
CE
LYS
72
1
Y
1
A
NZ
LYS
120
A
NZ
LYS
72
1
Y
1
A
CE
LYS
144
A
CE
LYS
96
1
Y
1
A
NZ
LYS
144
A
NZ
LYS
96
1
Y
1
A
CG
ASP
152
A
CG
ASP
104
1
Y
1
A
OD1
ASP
152
A
OD1
ASP
104
1
Y
1
A
OD2
ASP
152
A
OD2
ASP
104
1
Y
1
A
CD
GLU
153
A
CD
GLU
105
1
Y
1
A
OE1
GLU
153
A
OE1
GLU
105
1
Y
1
A
OE2
GLU
153
A
OE2
GLU
105
1
Y
1
A
CE
LYS
163
A
CE
LYS
115
1
Y
1
A
NZ
LYS
163
A
NZ
LYS
115
1
Y
1
A
CD
ARG
172
A
CD
ARG
124
1
Y
1
A
NE
ARG
172
A
NE
ARG
124
1
Y
1
A
CZ
ARG
172
A
CZ
ARG
124
1
Y
1
A
NH1
ARG
172
A
NH1
ARG
124
1
Y
1
A
NH2
ARG
172
A
NH2
ARG
124
1
Y
1
A
CD
LYS
173
A
CD
LYS
125
1
Y
1
A
CE
LYS
173
A
CE
LYS
125
1
Y
1
A
NZ
LYS
173
A
NZ
LYS
125
1
Y
1
A
CD
GLU
215
A
CD
GLU
167
1
Y
1
A
OE1
GLU
215
A
OE1
GLU
167
1
Y
1
A
OE2
GLU
215
A
OE2
GLU
167
1
Y
1
A
CA
SER
231
A
CA
SER
183
1
Y
1
A
C
SER
231
A
C
SER
183
1
Y
1
A
O
SER
231
A
O
SER
183
1
Y
1
A
CB
SER
231
A
CB
SER
183
1
Y
1
A
OG
SER
231
A
OG
SER
183
1
Y
1
A
N
ALA
237
A
N
ALA
189
1
Y
1
A
CB
ALA
237
A
CB
ALA
189
1
Y
1
A
CG
ARG
238
A
CG
ARG
190
1
Y
1
A
CD
ARG
238
A
CD
ARG
190
1
Y
1
A
NE
ARG
238
A
NE
ARG
190
1
Y
1
A
CZ
ARG
238
A
CZ
ARG
190
1
Y
1
A
NH1
ARG
238
A
NH1
ARG
190
1
Y
1
A
NH2
ARG
238
A
NH2
ARG
190
1
Y
1
A
CD
LYS
257
A
CD
LYS
209
1
Y
1
A
CE
LYS
257
A
CE
LYS
209
1
Y
1
A
NZ
LYS
257
A
NZ
LYS
209
1
Y
1
A
CG
ARG
283
A
CG
ARG
235
1
Y
1
A
CD
ARG
283
A
CD
ARG
235
1
Y
1
A
NE
ARG
283
A
NE
ARG
235
1
Y
1
A
CZ
ARG
283
A
CZ
ARG
235
1
Y
1
A
NH1
ARG
283
A
NH1
ARG
235
1
Y
1
A
NH2
ARG
283
A
NH2
ARG
235
1
Y
1
A
CG
GLU
303
A
CG
GLU
255
1
Y
1
A
CD
GLU
303
A
CD
GLU
255
1
Y
1
A
OE1
GLU
303
A
OE1
GLU
255
1
Y
1
A
OE2
GLU
303
A
OE2
GLU
255
1
Y
1
A
CE
LYS
304
A
CE
LYS
256
1
Y
1
A
NZ
LYS
304
A
NZ
LYS
256
1
Y
1
A
CE
LYS
323
A
CE
LYS
275
1
Y
1
A
NZ
LYS
323
A
NZ
LYS
275
1
Y
1
A
CD
GLU
328
A
CD
GLU
280
1
Y
1
A
OE1
GLU
328
A
OE1
GLU
280
1
Y
1
A
OE2
GLU
328
A
OE2
GLU
280
1
Y
1
A
CG
GLU
343
A
CG
GLU
295
1
Y
1
A
CD
GLU
343
A
CD
GLU
295
1
Y
1
A
OE1
GLU
343
A
OE1
GLU
295
1
Y
1
A
OE2
GLU
343
A
OE2
GLU
295
1
Y
1
A
CG
GLU
348
A
CG
GLU
300
1
Y
1
A
CD
GLU
348
A
CD
GLU
300
1
Y
1
A
OE1
GLU
348
A
OE1
GLU
300
1
Y
1
A
OE2
GLU
348
A
OE2
GLU
300
1
Y
1
A
CD
LYS
357
A
CD
LYS
309
1
Y
1
A
CE
LYS
357
A
CE
LYS
309
1
Y
1
A
NZ
LYS
357
A
NZ
LYS
309
1
Y
1
A
CA
THR
359
A
CA
THR
311
1
Y
1
A
C
THR
359
A
C
THR
311
1
Y
1
A
O
THR
359
A
O
THR
311
1
Y
1
A
CB
THR
359
A
CB
THR
311
1
Y
1
A
OG1
THR
359
A
OG1
THR
311
1
Y
1
A
CG2
THR
359
A
CG2
THR
311
1
Y
1
A
GLY
49
A
GLY
1
1
Y
1
A
ALA
50
A
ALA
2
1
Y
1
A
MET
51
A
MET
3
1
Y
1
A
ASP
52
A
ASP
4
1
Y
1
A
GLY
53
A
GLY
5
1
Y
1
A
THR
54
A
THR
6
1
Y
1
A
ALA
55
A
ALA
7
1
Y
1
A
ALA
56
A
ALA
8
1
Y
1
A
GLU
57
A
GLU
9
1
Y
1
A
PRO
58
A
PRO
10
1
Y
1
A
ARG
59
A
ARG
11
1
Y
1
A
PRO
60
A
PRO
12
1
Y
1
A
GLY
61
A
GLY
13
1
Y
1
A
ALA
62
A
ALA
14
1
Y
1
A
GLY
63
A
GLY
15
1
Y
1
A
SER
64
A
SER
16
1
Y
1
A
LEU
65
A
LEU
17
1
Y
1
A
GLN
73
A
GLN
25
1
Y
1
A
PRO
74
A
PRO
26
1
Y
1
A
PRO
232
A
PRO
184
1
Y
1
A
GLU
233
A
GLU
185
1
Y
1
A
SER
234
A
SER
186
1
Y
1
A
LYS
235
A
LYS
187
1
Y
1
A
GLN
236
A
GLN
188
1
Y
1
A
SER
105
58.73
12.62
1
A
ASP
138
-146.02
49.92
1
A
ARG
204
78.32
-13.29
1
A
ASP
223
68.96
84.69
1
A
LYS
304
B
-101.28
49.17
26.9
2.4079
0.0000
-6.5737
-1.1075
0.0000
-1.3004
RESIDUES 72-74 ARE DISORDERED
0.1858
0.1641
0.1652
1.680
36.301
1617
32317
5.0
99.77
0.18
1
2.00
MOLECULAR REPLACEMENT
18.65
0.86
1.10
PDB ENTRY 3HRC
ML
FLAT BULK SOLVENT MODEL
48.854
0.413
1.680
36.301
145
2451
72
0
2234
0.007
2407
1.223
3282
13.691
880
0.072
365
0.006
413
0.3126
0.2683
1.7294
135
2554
100.00
0.2388
0.2281
1.7852
133
2526
100.00
0.2205
0.2069
1.8490
134
2555
100.00
0.2181
0.1927
1.9230
133
2523
100.00
0.2301
0.1665
2.0105
134
2546
100.00
0.1621
0.1514
2.1165
135
2556
100.00
0.1761
0.1429
2.2491
134
2550
100.00
0.1942
0.1475
2.4227
135
2559
100.00
0.2108
0.1570
2.6664
133
2540
100.00
0.1811
0.1549
3.0521
136
2568
100.00
0.1690
0.1489
3.8447
136
2583
100.00
0.1612
0.1666
36.3099
139
2640
99.00
20.17
1.68
36.00
4AW1
32322
2.0
0.05
1
15.90
4.1
99.7
0.67
1.68
1.78
2.00
1
4.1
99.9
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
Human PDK1 Kinase Domain in Complex with Allosteric Compound PS210 Bound to the PIF-Pocket
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
7
N
N
8
N
N
A
LYS
115
A
LYS
67
HELX_P
A
GLU
121
A
GLU
73
1
1
7
A
PRO
125
A
PRO
77
HELX_P
A
SER
135
A
SER
87
1
2
11
A
LEU
167
A
LEU
119
HELX_P
A
ILE
174
A
ILE
126
1
3
8
A
GLU
179
A
GLU
131
HELX_P
A
LYS
199
A
LYS
151
1
4
21
A
PRO
251
A
PRO
203
HELX_P
A
GLU
256
A
GLU
208
1
5
6
A
SER
262
A
SER
214
HELX_P
A
ALA
277
A
ALA
229
1
6
16
A
GLU
287
A
GLU
239
HELX_P
A
ILE
295
A
ILE
247
1
7
9
A
PRO
307
A
PRO
259
HELX_P
A
LEU
316
A
LEU
268
1
8
10
A
TYR
333
A
TYR
285
HELX_P
A
ALA
338
A
ALA
290
1
9
6
covale
1.327
both
A
ASN
240
A
C
ASN
192
1_555
A
SEP
241
A
N
SEP
193
1_555
covale
1.329
both
A
SEP
241
A
C
SEP
193
1_555
A
PHE
242
A
N
PHE
194
1_555
metalc
2.745
A
SER
191
A
O
SER
143
1_555
A
NA
1366
H
NA
NA
1_555
metalc
2.864
A
GLU
194
A
OE1
GLU
146
1_555
A
NA
1366
H
NA
NA
1_555
metalc
2.595
A
ASN
210
A
OD1
ASN
162
1_555
A
NA
1365
G
NA
NA
1_555
metalc
2.387
A
ASP
223
A
OD2
ASP
175
1_555
A
MN
1364
F
MN
MN
1_555
metalc
2.404
A
ASP
223
A
OD1
ASP
175
1_555
A
MN
1364
F
MN
MN
1_555
metalc
2.476
A
ASP
223
A
OD2
ASP
175
1_555
A
NA
1365
G
NA
NA
1_555
metalc
2.134
A
ATP
1360
B
O1B
ATP
1_555
A
MN
1364
F
MN
MN
1_555
metalc
2.529
A
ATP
1360
B
O1G
ATP
1_555
A
MN
1364
F
MN
MN
1_555
metalc
3.168
A
ATP
1360
B
O1G
ATP
1_555
A
NA
1365
G
NA
NA
1_555
metalc
3.017
A
ATP
1360
B
O3B
ATP
1_555
A
NA
1365
G
NA
NA
1_555
metalc
2.515
A
ATP
1360
B
O1A
ATP
1_555
A
NA
1365
G
NA
NA
1_555
metalc
2.959
A
NA
1365
G
NA
NA
1_555
A
HOH
2088
L
O
HOH
1_555
metalc
3.151
A
NA
1365
G
NA
NA
1_555
A
HOH
2090
L
O
HOH
1_555
metalc
2.733
A
NA
1365
G
NA
NA
1_555
A
HOH
2091
L
O
HOH
1_555
metalc
2.871
A
NA
1366
H
NA
NA
1_555
A
HOH
2025
L
O
HOH
2_555
metalc
2.715
A
NA
1366
H
NA
NA
1_555
A
HOH
2044
L
O
HOH
1_555
TRANSFERASE
TRANSFERASE, ALLOSTERIC REGULATION, ALLOSTERIC SITE, PHOSPHORYLATION, AGC PROTEIN KINASE
PDPK1_HUMAN
UNP
1
O15530
51
359
4AW1
51
359
O15530
A
1
3
311
1
expression tag
GLY
49
4AW1
A
O15530
UNP
1
1
expression tag
ALA
50
4AW1
A
O15530
UNP
2
1
TYR
engineered mutation
GLY
288
4AW1
A
O15530
UNP
288
240
1
GLN
engineered mutation
ALA
292
4AW1
A
O15530
UNP
292
244
5
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
82
A
PHE
34
A
GLY
91
A
GLY
43
A
SER
94
A
SER
46
A
GLU
101
A
GLU
53
A
ARG
106
A
ARG
58
A
GLU
114
A
GLU
66
A
LYS
154
A
LYS
106
A
SER
160
A
SER
112
A
PHE
147
A
PHE
99
A
ASP
151
A
ASP
103
A
GLY
165
A
GLY
117
A
GLU
166
A
GLU
118
A
ILE
211
A
ILE
163
A
ASN
214
A
ASN
166
A
HIS
218
A
HIS
170
A
ILE
221
A
ILE
173
A
ILE
201
A
ILE
153
A
ILE
202
A
ILE
154
A
LYS
228
A
LYS
180
A
VAL
229
A
VAL
181
BINDING SITE FOR RESIDUE ATP A 1360
A
ATP
1360
Software
23
BINDING SITE FOR RESIDUE 21O A 1361
A
21O
1361
Software
17
BINDING SITE FOR RESIDUE DMS A 1362
A
DMS
1362
Software
9
BINDING SITE FOR RESIDUE DMS A 1363
A
DMS
1363
Software
3
BINDING SITE FOR RESIDUE MN A 1364
A
MN
1364
Software
2
BINDING SITE FOR RESIDUE NA A 1365
A
NA
1365
Software
5
BINDING SITE FOR RESIDUE NA A 1366
A
NA
1366
Software
4
BINDING SITE FOR RESIDUE CL A 1369
A
CL
1369
Software
1
A
LEU
88
A
LEU
40
23
1_555
A
GLY
89
A
GLY
41
23
1_555
A
GLY
91
A
GLY
43
23
1_555
A
SER
92
A
SER
44
23
1_555
A
SER
94
A
SER
46
23
1_555
A
VAL
96
A
VAL
48
23
1_555
A
ALA
109
A
ALA
61
23
1_555
A
LYS
111
A
LYS
63
23
1_555
A
SER
160
A
SER
112
23
1_555
A
ALA
162
A
ALA
114
23
1_555
A
GLU
166
A
GLU
118
23
1_555
A
GLU
209
A
GLU
161
23
1_555
A
ASN
210
A
ASN
162
23
1_555
A
LEU
212
A
LEU
164
23
1_555
A
ASP
223
A
ASP
175
23
1_555
A
MN
1364
F
MN
23
1_555
A
NA
1365
G
NA
23
1_555
A
HOH
2012
L
HOH
23
1_555
A
HOH
2013
L
HOH
23
1_555
A
HOH
2017
L
HOH
23
1_555
A
HOH
2088
L
HOH
23
1_555
A
HOH
2090
L
HOH
23
1_555
A
HOH
2094
L
HOH
23
1_555
A
GLN
66
A
GLN
18
17
2_555
A
HIS
67
A
HIS
19
17
2_555
A
ALA
68
A
ALA
20
17
2_555
A
LYS
76
A
LYS
28
17
1_555
A
LYS
115
A
LYS
67
17
1_555
A
ILE
119
A
ILE
71
17
1_555
A
VAL
124
A
VAL
76
17
1_555
A
VAL
127
A
VAL
79
17
1_555
A
THR
128
A
THR
80
17
1_555
A
ARG
131
A
ARG
83
17
1_555
A
THR
148
A
THR
100
17
1_555
A
PHE
149
A
PHE
101
17
1_555
A
GLN
150
A
GLN
102
17
1_555
A
LEU
155
A
LEU
107
17
1_555
A
PHE
157
A
PHE
109
17
1_555
A
HOH
2001
L
HOH
17
2_555
A
HOH
2051
L
HOH
17
1_555
A
THR
104
A
THR
56
9
2_555
A
SER
105
A
SER
57
9
2_555
A
HIS
139
A
HIS
91
9
1_555
A
TRP
347
A
TRP
299
9
1_555
A
GLU
348
A
GLU
300
9
1_555
A
ASN
349
A
ASN
301
9
1_555
A
LEU
350
A
LEU
302
9
1_555
A
HIS
351
A
HIS
303
9
1_555
A
HOH
2077
L
HOH
9
1_555
A
ARG
172
A
ARG
124
3
1_555
A
GLY
278
A
GLY
230
3
1_555
A
ALA
292
A
ALA
244
3
4_445
A
ASP
223
A
ASP
175
2
1_555
A
ATP
1360
B
ATP
2
1_555
A
ASN
210
A
ASN
162
5
1_555
A
ASP
223
A
ASP
175
5
1_555
A
ATP
1360
B
ATP
5
1_555
A
HOH
2088
L
HOH
5
1_555
A
HOH
2091
L
HOH
5
1_555
A
SER
191
A
SER
143
4
1_555
A
GLU
194
A
GLU
146
4
1_555
A
HOH
2025
L
HOH
4
2_555
A
HOH
2044
L
HOH
4
1_555
A
GLN
247
A
GLN
199
1
1_555
5
C 1 2 1