0.024588 0.000000 0.000000 0.000000 0.011161 0.000000 0.000000 0.000000 0.007382 0.00000 0.00000 0.00000 Hagelueken, G. Huang, H. Naismith, J.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 40.670 89.600 135.460 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H16 N5 O13 P3 507.181 ADENOSINE-5'-TRIPHOSPHATE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C15 H22 N6 O5 S 398.437 S-ADENOSYLMETHIONINE non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Mol.Microbiol. MOMIEE 2007 0950-382X 86 730 10.1111/MMI.12014 22970759 Structure of Wbdd; a Bifunctional Kinase and Methyltransferase that Regulates the Chain Length of the O Antigen in Escherichia Coli O9A. 2012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 PIXEL DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.9173 1.0 I04-1 Diamond 0.9173 SYNCHROTRON DIAMOND BEAMLINE I04-1 54153.969 WBDD RESIDUES 2-458 1 man polymer 507.181 ADENOSINE-5'-TRIPHOSPHATE 1 syn non-polymer 398.437 S-ADENOSYLMETHIONINE 1 syn non-polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 77 nat water no no MHHHHHHENLYFQGTKDLNTLVSELPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFF SLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLL SRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRLIGEFDTHLSPVPRPMYLVSNHRVLINDFNQPFQHWQN QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKHELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV MEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKKGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLV QSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSNWLYAVWQEPVERWNFALLLALFEKKAKLPSAEQQ MHHHHHHENLYFQGTKDLNTLVSELPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFF SLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLL SRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRLIGEFDTHLSPVPRPMYLVSNHRVLINDFNQPFQHWQN QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKHELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV MEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKKGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLV QSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSNWLYAVWQEPVERWNFALLLALFEKKAKLPSAEQQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample ORF708 562 ESCHERICHIA COLI 562 ESCHERICHIA COLI 2.5 50.3 NONE repository Initial release Database references 1 0 2012-09-26 1 1 2012-11-14 MEDIUM RESOLUTION STRUCTURE OF THE BIFUNCTIONAL KINASE- METHYLTRANSFERASE WBDD HIGH RESOLUTION (2.2 A) CRYSTAL STRUCTURE OF WBDD. CO-CRYSTAL STRUCTURE OF WBDD AND KINASE INHIBITOR LY294002. CO-CRYSTAL STRUCTURE OF WBDD AND KINASE INHIBITOR GW435821X. PDBE Y PDBE 2012-06-26 REL ATP ADENOSINE-5'-TRIPHOSPHATE SAM S-ADENOSYLMETHIONINE MG MAGNESIUM ION HOH water ATP 1450 2 ATP ATP 1450 A SAM 1451 3 SAM SAM 1451 A MG 1452 4 MG MG 1452 A MG 1453 4 MG MG 1453 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2026 5 HOH HOH 2026 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2073 5 HOH HOH 2073 A HOH 2074 5 HOH HOH 2074 A HOH 2075 5 HOH HOH 2075 A HOH 2076 5 HOH HOH 2076 A HOH 2077 5 HOH HOH 2077 A n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A n 14 1 A n 15 2 A n 16 3 A n 17 4 A LEU 5 n 18 LEU 5 A ASN 6 n 19 ASN 6 A THR 7 n 20 THR 7 A LEU 8 n 21 LEU 8 A VAL 9 n 22 VAL 9 A SER 10 n 23 SER 10 A GLU 11 n 24 GLU 11 A LEU 12 n 25 LEU 12 A PRO 13 n 26 PRO 13 A GLU 14 n 27 GLU 14 A ILE 15 n 28 ILE 15 A TYR 16 n 29 TYR 16 A GLN 17 n 30 GLN 17 A THR 18 n 31 THR 18 A ILE 19 n 32 ILE 19 A PHE 20 n 33 PHE 20 A GLY 21 n 34 GLY 21 A HIS 22 n 35 HIS 22 A PRO 23 n 36 PRO 23 A GLU 24 n 37 GLU 24 A TRP 25 n 38 TRP 25 A ASP 26 n 39 ASP 26 A GLY 27 n 40 GLY 27 A ASP 28 n 41 ASP 28 A ALA 29 n 42 ALA 29 A ALA 30 n 43 ALA 30 A ARG 31 n 44 ARG 31 A ASP 32 n 45 ASP 32 A CYS 33 n 46 CYS 33 A ASN 34 n 47 ASN 34 A GLN 35 n 48 GLN 35 A ARG 36 n 49 ARG 36 A LEU 37 n 50 LEU 37 A ASP 38 n 51 ASP 38 A LEU 39 n 52 LEU 39 A ILE 40 n 53 ILE 40 A THR 41 n 54 THR 41 A GLU 42 n 55 GLU 42 A GLN 43 n 56 GLN 43 A TYR 44 n 57 TYR 44 A ASP 45 n 58 ASP 45 A ASN 46 n 59 ASN 46 A LEU 47 n 60 LEU 47 A SER 48 n 61 SER 48 A ARG 49 n 62 ARG 49 A ALA 50 n 63 ALA 50 A LEU 51 n 64 LEU 51 A GLY 52 n 65 GLY 52 A ARG 53 n 66 ARG 53 A PRO 54 n 67 PRO 54 A LEU 55 n 68 LEU 55 A ASN 56 n 69 ASN 56 A VAL 57 n 70 VAL 57 A LEU 58 n 71 LEU 58 A ASP 59 n 72 ASP 59 A LEU 60 n 73 LEU 60 A GLY 61 n 74 GLY 61 A CYS 62 n 75 CYS 62 A ALA 63 n 76 ALA 63 A GLN 64 n 77 GLN 64 A GLY 65 n 78 GLY 65 A PHE 66 n 79 PHE 66 A PHE 67 n 80 PHE 67 A SER 68 n 81 SER 68 A LEU 69 n 82 LEU 69 A SER 70 n 83 SER 70 A LEU 71 n 84 LEU 71 A ALA 72 n 85 ALA 72 A SER 73 n 86 SER 73 A LYS 74 n 87 LYS 74 A GLY 75 n 88 GLY 75 A ALA 76 n 89 ALA 76 A THR 77 n 90 THR 77 A ILE 78 n 91 ILE 78 A VAL 79 n 92 VAL 79 A GLY 80 n 93 GLY 80 A ILE 81 n 94 ILE 81 A ASP 82 n 95 ASP 82 A PHE 83 n 96 PHE 83 A GLN 84 n 97 GLN 84 A GLN 85 n 98 GLN 85 A GLU 86 n 99 GLU 86 A ASN 87 n 100 ASN 87 A ILE 88 n 101 ILE 88 A ASN 89 n 102 ASN 89 A VAL 90 n 103 VAL 90 A CYS 91 n 104 CYS 91 A ARG 92 n 105 ARG 92 A ALA 93 n 106 ALA 93 A LEU 94 n 107 LEU 94 A ALA 95 n 108 ALA 95 A GLU 96 n 109 GLU 96 A GLU 97 n 110 GLU 97 A ASN 98 n 111 ASN 98 A PRO 99 n 112 PRO 99 A ASP 100 n 113 ASP 100 A PHE 101 n 114 PHE 101 A ALA 102 n 115 ALA 102 A ALA 103 n 116 ALA 103 A GLU 104 n 117 GLU 104 A PHE 105 n 118 PHE 105 A ARG 106 n 119 ARG 106 A VAL 107 n 120 VAL 107 A GLY 108 n 121 GLY 108 A ARG 109 n 122 ARG 109 A ILE 110 n 123 ILE 110 A GLU 111 n 124 GLU 111 A GLU 112 n 125 GLU 112 A VAL 113 n 126 VAL 113 A ILE 114 n 127 ILE 114 A ALA 115 n 128 ALA 115 A ALA 116 n 129 ALA 116 A LEU 117 n 130 LEU 117 A GLU 118 n 131 GLU 118 A GLU 119 n 132 GLU 119 A GLY 120 n 133 GLY 120 A GLU 121 n 134 GLU 121 A PHE 122 n 135 PHE 122 A ASP 123 n 136 ASP 123 A LEU 124 n 137 LEU 124 A ALA 125 n 138 ALA 125 A ILE 126 n 139 ILE 126 A GLY 127 n 140 GLY 127 A LEU 128 n 141 LEU 128 A SER 129 n 142 SER 129 A VAL 130 n 143 VAL 130 A PHE 131 n 144 PHE 131 A HIS 132 n 145 HIS 132 A HIS 133 n 146 HIS 133 A ILE 134 n 147 ILE 134 A VAL 135 n 148 VAL 135 A HIS 136 n 149 HIS 136 A LEU 137 n 150 LEU 137 A HIS 138 n 151 HIS 138 A GLY 139 n 152 GLY 139 A ILE 140 n 153 ILE 140 A ASP 141 n 154 ASP 141 A GLU 142 n 155 GLU 142 A VAL 143 n 156 VAL 143 A LYS 144 n 157 LYS 144 A ARG 145 n 158 ARG 145 A LEU 146 n 159 LEU 146 A LEU 147 n 160 LEU 147 A SER 148 n 161 SER 148 A ARG 149 n 162 ARG 149 A LEU 150 n 163 LEU 150 A ALA 151 n 164 ALA 151 A ASP 152 n 165 ASP 152 A VAL 153 n 166 VAL 153 A THR 154 n 167 THR 154 A GLN 155 n 168 GLN 155 A ALA 156 n 169 ALA 156 A VAL 157 n 170 VAL 157 A ILE 158 n 171 ILE 158 A LEU 159 n 172 LEU 159 A GLU 160 n 173 GLU 160 A LEU 161 n 174 LEU 161 A ALA 162 n 175 ALA 162 A VAL 163 n 176 VAL 163 A LYS 164 n 177 LYS 164 A GLU 165 n 178 GLU 165 A GLU 166 n 179 GLU 166 A PRO 167 n 180 PRO 167 A PHE 168 n 181 PHE 168 A TYR 169 n 182 TYR 169 A TRP 170 n 183 TRP 170 A GLY 171 n 184 GLY 171 A VAL 172 n 185 VAL 172 A SER 173 n 186 SER 173 A GLN 174 n 187 GLN 174 A PRO 175 n 188 PRO 175 A ASP 176 n 189 ASP 176 A ASP 177 n 190 ASP 177 A PRO 178 n 191 PRO 178 A ARG 179 n 192 ARG 179 A GLU 180 n 193 GLU 180 A LEU 181 n 194 LEU 181 A ILE 182 n 195 ILE 182 A GLU 183 n 196 GLU 183 A GLN 184 n 197 GLN 184 A CYS 185 n 198 CYS 185 A ALA 186 n 199 ALA 186 A PHE 187 n 200 PHE 187 A TYR 188 n 201 TYR 188 A ARG 189 n 202 ARG 189 A LEU 190 n 203 LEU 190 A ILE 191 n 204 ILE 191 A GLY 192 n 205 GLY 192 A GLU 193 n 206 GLU 193 A PHE 194 n 207 PHE 194 A ASP 195 n 208 ASP 195 A n 209 196 A n 210 197 A n 211 198 A n 212 199 A n 213 200 A n 214 201 A n 215 202 A ARG 203 n 216 ARG 203 A PRO 204 n 217 PRO 204 A MET 205 n 218 MET 205 A TYR 206 n 219 TYR 206 A LEU 207 n 220 LEU 207 A VAL 208 n 221 VAL 208 A SER 209 n 222 SER 209 A ASN 210 n 223 ASN 210 A HIS 211 n 224 HIS 211 A ARG 212 n 225 ARG 212 A VAL 213 n 226 VAL 213 A LEU 214 n 227 LEU 214 A ILE 215 n 228 ILE 215 A ASN 216 n 229 ASN 216 A ASP 217 n 230 ASP 217 A PHE 218 n 231 PHE 218 A ASN 219 n 232 ASN 219 A GLN 220 n 233 GLN 220 A PRO 221 n 234 PRO 221 A PHE 222 n 235 PHE 222 A GLN 223 n 236 GLN 223 A HIS 224 n 237 HIS 224 A TRP 225 n 238 TRP 225 A GLN 226 n 239 GLN 226 A ASN 227 n 240 ASN 227 A GLN 228 n 241 GLN 228 A PRO 229 n 242 PRO 229 A TYR 230 n 243 TYR 230 A ALA 231 n 244 ALA 231 A GLY 232 n 245 GLY 232 A ALA 233 n 246 ALA 233 A GLY 234 n 247 GLY 234 A LEU 235 n 248 LEU 235 A ALA 236 n 249 ALA 236 A HIS 237 n 250 HIS 237 A LYS 238 n 251 LYS 238 A ARG 239 n 252 ARG 239 A SER 240 n 253 SER 240 A ARG 241 n 254 ARG 241 A ARG 242 n 255 ARG 242 A TYR 243 n 256 TYR 243 A PHE 244 n 257 PHE 244 A PHE 245 n 258 PHE 245 A GLY 246 n 259 GLY 246 A GLU 247 n 260 GLU 247 A ASP 248 n 261 ASP 248 A TYR 249 n 262 TYR 249 A VAL 250 n 263 VAL 250 A CYS 251 n 264 CYS 251 A LYS 252 n 265 LYS 252 A PHE 253 n 266 PHE 253 A PHE 254 n 267 PHE 254 A TYR 255 n 268 TYR 255 A TYR 256 n 269 TYR 256 A ASP 257 n 270 ASP 257 A MET 258 n 271 MET 258 A PRO 259 n 272 PRO 259 A HIS 260 n 273 HIS 260 A GLY 261 n 274 GLY 261 A ILE 262 n 275 ILE 262 A LEU 263 n 276 LEU 263 A THR 264 n 277 THR 264 A ALA 265 n 278 ALA 265 A GLU 266 n 279 GLU 266 A GLU 267 n 280 GLU 267 A SER 268 n 281 SER 268 A GLN 269 n 282 GLN 269 A ARG 270 n 283 ARG 270 A ASN 271 n 284 ASN 271 A LYS 272 n 285 LYS 272 A HIS 273 n 286 HIS 273 A GLU 274 n 287 GLU 274 A LEU 275 n 288 LEU 275 A HIS 276 n 289 HIS 276 A ASN 277 n 290 ASN 277 A GLU 278 n 291 GLU 278 A ILE 279 n 292 ILE 279 A LYS 280 n 293 LYS 280 A PHE 281 n 294 PHE 281 A LEU 282 n 295 LEU 282 A THR 283 n 296 THR 283 A GLN 284 n 297 GLN 284 A PRO 285 n 298 PRO 285 A PRO 286 n 299 PRO 286 A ALA 287 n 300 ALA 287 A GLY 288 n 301 GLY 288 A PHE 289 n 302 PHE 289 A ASP 290 n 303 ASP 290 A ALA 291 n 304 ALA 291 A PRO 292 n 305 PRO 292 A ALA 293 n 306 ALA 293 A VAL 294 n 307 VAL 294 A LEU 295 n 308 LEU 295 A ALA 296 n 309 ALA 296 A HIS 297 n 310 HIS 297 A GLY 298 n 311 GLY 298 A GLU 299 n 312 GLU 299 A ASN 300 n 313 ASN 300 A ALA 301 n 314 ALA 301 A GLN 302 n 315 GLN 302 A SER 303 n 316 SER 303 A GLY 304 n 317 GLY 304 A TRP 305 n 318 TRP 305 A LEU 306 n 319 LEU 306 A VAL 307 n 320 VAL 307 A MET 308 n 321 MET 308 A GLU 309 n 322 GLU 309 A LYS 310 n 323 LYS 310 A LEU 311 n 324 LEU 311 A PRO 312 n 325 PRO 312 A GLY 313 n 326 GLY 313 A ARG 314 n 327 ARG 314 A LEU 315 n 328 LEU 315 A LEU 316 n 329 LEU 316 A SER 317 n 330 SER 317 A ASP 318 n 331 ASP 318 A MET 319 n 332 MET 319 A LEU 320 n 333 LEU 320 A ALA 321 n 334 ALA 321 A ALA 322 n 335 ALA 322 A GLY 323 n 336 GLY 323 A GLU 324 n 337 GLU 324 A GLU 325 n 338 GLU 325 A ILE 326 n 339 ILE 326 A ASP 327 n 340 ASP 327 A ARG 328 n 341 ARG 328 A GLU 329 n 342 GLU 329 A LYS 330 n 343 LYS 330 A ILE 331 n 344 ILE 331 A LEU 332 n 345 LEU 332 A GLY 333 n 346 GLY 333 A SER 334 n 347 SER 334 A LEU 335 n 348 LEU 335 A LEU 336 n 349 LEU 336 A ARG 337 n 350 ARG 337 A SER 338 n 351 SER 338 A LEU 339 n 352 LEU 339 A ALA 340 n 353 ALA 340 A ALA 341 n 354 ALA 341 A LEU 342 n 355 LEU 342 A GLU 343 n 356 GLU 343 A LYS 344 n 357 LYS 344 A LYS 345 n 358 LYS 345 A GLY 346 n 359 GLY 346 A PHE 347 n 360 PHE 347 A TRP 348 n 361 TRP 348 A HIS 349 n 362 HIS 349 A ASP 350 n 363 ASP 350 A ASP 351 n 364 ASP 351 A VAL 352 n 365 VAL 352 A ARG 353 n 366 ARG 353 A PRO 354 n 367 PRO 354 A TRP 355 n 368 TRP 355 A ASN 356 n 369 ASN 356 A VAL 357 n 370 VAL 357 A MET 358 n 371 MET 358 A VAL 359 n 372 VAL 359 A ASP 360 n 373 ASP 360 A ALA 361 n 374 ALA 361 A ARG 362 n 375 ARG 362 A GLN 363 n 376 GLN 363 A HIS 364 n 377 HIS 364 A ALA 365 n 378 ALA 365 A ARG 366 n 379 ARG 366 A LEU 367 n 380 LEU 367 A ILE 368 n 381 ILE 368 A ASP 369 n 382 ASP 369 A PHE 370 n 383 PHE 370 A GLY 371 n 384 GLY 371 A SER 372 n 385 SER 372 A ILE 373 n 386 ILE 373 A VAL 374 n 387 VAL 374 A THR 375 n 388 THR 375 A THR 376 n 389 THR 376 A n 390 377 A n 391 378 A n 392 379 A n 393 380 A n 394 381 A n 395 382 A PRO 383 n 396 PRO 383 A THR 384 n 397 THR 384 A ASN 385 n 398 ASN 385 A LEU 386 n 399 LEU 386 A VAL 387 n 400 VAL 387 A GLN 388 n 401 GLN 388 A SER 389 n 402 SER 389 A PHE 390 n 403 PHE 390 A PHE 391 n 404 PHE 391 A VAL 392 n 405 VAL 392 A PHE 393 n 406 PHE 393 A VAL 394 n 407 VAL 394 A ASN 395 n 408 ASN 395 A GLU 396 n 409 GLU 396 A LEU 397 n 410 LEU 397 A PHE 398 n 411 PHE 398 A n 412 399 A n 413 400 A n 414 401 A n 415 402 A n 416 403 A n 417 404 A n 418 405 A n 419 406 A n 420 407 A n 421 408 A n 422 409 A n 423 410 A n 424 411 A n 425 412 A n 426 413 A n 427 414 A n 428 415 A n 429 416 A n 430 417 A LEU 418 n 431 LEU 418 A PRO 419 n 432 PRO 419 A GLN 420 n 433 GLN 420 A PRO 421 n 434 PRO 421 A TRP 422 n 435 TRP 422 A SER 423 n 436 SER 423 A ASN 424 n 437 ASN 424 A TRP 425 n 438 TRP 425 A LEU 426 n 439 LEU 426 A TYR 427 n 440 TYR 427 A ALA 428 n 441 ALA 428 A VAL 429 n 442 VAL 429 A TRP 430 n 443 TRP 430 A GLN 431 n 444 GLN 431 A GLU 432 n 445 GLU 432 A PRO 433 n 446 PRO 433 A VAL 434 n 447 VAL 434 A GLU 435 n 448 GLU 435 A ARG 436 n 449 ARG 436 A TRP 437 n 450 TRP 437 A ASN 438 n 451 ASN 438 A PHE 439 n 452 PHE 439 A ALA 440 n 453 ALA 440 A LEU 441 n 454 LEU 441 A LEU 442 n 455 LEU 442 A LEU 443 n 456 LEU 443 A ALA 444 n 457 ALA 444 A LEU 445 n 458 LEU 445 A PHE 446 n 459 PHE 446 A GLU 447 n 460 GLU 447 A LYS 448 n 461 LYS 448 A LYS 449 n 462 LYS 449 A n 463 450 A n 464 451 A n 465 452 A n 466 453 A n 467 454 A n 468 455 A n 469 456 A n 470 457 A n 471 458 A 0.7027 -0.5527 1.2390 0.7671 -1.1096 2.3982 0.0462 -0.0367 0.0064 -0.2124 0.0506 0.0007 0.2109 0.0170 -0.0968 0.1086 0.0078 -0.0434 0.0747 -0.0184 0.1615 refined -15.8060 17.7730 -24.9900 X-RAY DIFFRACTION A 5 A 39 X-RAY DIFFRACTION 1 A 40 A 192 X-RAY DIFFRACTION 1 A 193 A 269 X-RAY DIFFRACTION 1 A 270 A 419 X-RAY DIFFRACTION 1 A 420 A 449 X-RAY DIFFRACTION 1 software_defined_assembly PISA 1 monomeric A ATP 1450 B O2G ATP 1_555 A MG 1452 D MG MG 1_555 A ATP 1450 B O1A ATP 1_555 105.1 A ATP 1450 B O2G ATP 1_555 A MG 1452 D MG MG 1_555 A ASN 356 A OD1 ASN 369 1_555 120.8 A ATP 1450 B O1A ATP 1_555 A MG 1452 D MG MG 1_555 A ASN 356 A OD1 ASN 369 1_555 133.9 A ATP 1450 B O2G ATP 1_555 A MG 1452 D MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 86.4 A ATP 1450 B O1A ATP 1_555 A MG 1452 D MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 87.0 A ASN 356 A OD1 ASN 369 1_555 A MG 1452 D MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 99.2 A ATP 1450 B O2G ATP 1_555 A MG 1452 D MG MG 1_555 A HOH 2069 F O HOH 1_555 97.2 A ATP 1450 B O1A ATP 1_555 A MG 1452 D MG MG 1_555 A HOH 2069 F O HOH 1_555 85.3 A ASN 356 A OD1 ASN 369 1_555 A MG 1452 D MG MG 1_555 A HOH 2069 F O HOH 1_555 85.1 A ASP 369 A OD2 ASP 382 1_555 A MG 1452 D MG MG 1_555 A HOH 2069 F O HOH 1_555 172.1 A ATP 1450 B O3G ATP 1_555 A MG 1453 E MG MG 1_555 A ATP 1450 B O1B ATP 1_555 86.7 A ATP 1450 B O3G ATP 1_555 A MG 1453 E MG MG 1_555 A GLU 274 A OE2 GLU 287 1_555 123.4 A ATP 1450 B O1B ATP 1_555 A MG 1453 E MG MG 1_555 A GLU 274 A OE2 GLU 287 1_555 91.8 A ATP 1450 B O3G ATP 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD1 ASP 382 1_555 140.4 A ATP 1450 B O1B ATP 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD1 ASP 382 1_555 81.2 A GLU 274 A OE2 GLU 287 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD1 ASP 382 1_555 94.7 A ATP 1450 B O3G ATP 1_555 A MG 1453 E MG MG 1_555 A HOH 2055 F O HOH 1_555 94.5 A ATP 1450 B O1B ATP 1_555 A MG 1453 E MG MG 1_555 A HOH 2055 F O HOH 1_555 158.2 A GLU 274 A OE2 GLU 287 1_555 A MG 1453 E MG MG 1_555 A HOH 2055 F O HOH 1_555 105.5 A ASP 369 A OD1 ASP 382 1_555 A MG 1453 E MG MG 1_555 A HOH 2055 F O HOH 1_555 84.1 A ATP 1450 B O3G ATP 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 82.2 A ATP 1450 B O1B ATP 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 70.9 A GLU 274 A OE2 GLU 287 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 148.9 A ASP 369 A OD1 ASP 382 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 58.1 A HOH 2055 F O HOH 1_555 A MG 1453 E MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 87.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 104 A N GLU 117 A O ILE 78 A O ILE 91 A N VAL 79 A N VAL 92 A O VAL 57 A O VAL 70 A N LEU 58 A N LEU 71 A O LEU 124 A O LEU 137 A N ALA 125 A N ALA 138 A O ALA 156 A O ALA 169 A N LEU 159 A N LEU 172 A O TYR 206 A O TYR 219 A N SER 209 A N SER 222 A O PHE 187 A O PHE 200 A N ILE 215 A N ILE 228 A O PHE 218 A O PHE 231 A N GLN 226 A N GLN 239 A O TYR 243 A O TYR 256 A N PHE 244 A N PHE 257 A O CYS 251 A O CYS 264 A N PHE 254 A N PHE 267 A O GLY 304 A O GLY 317 A O VAL 307 A O VAL 320 A N LEU 295 A N LEU 308 A N ARG 314 A N ARG 327 A O VAL 359 A O VAL 372 A N MET 358 A N MET 371 A O ARG 366 A O ARG 379 A N TRP 348 A N TRP 361 A O VAL 374 A O VAL 387 1 A CG LEU 418 A CG LEU 431 1 Y 1 A CD1 LEU 418 A CD1 LEU 431 1 Y 1 A CD2 LEU 418 A CD2 LEU 431 1 Y 1 A MET -12 A MET 1 1 Y 1 A HIS -11 A HIS 2 1 Y 1 A HIS -10 A HIS 3 1 Y 1 A HIS -9 A HIS 4 1 Y 1 A HIS -8 A HIS 5 1 Y 1 A HIS -7 A HIS 6 1 Y 1 A HIS -6 A HIS 7 1 Y 1 A GLU -5 A GLU 8 1 Y 1 A ASN -4 A ASN 9 1 Y 1 A LEU -3 A LEU 10 1 Y 1 A TYR -2 A TYR 11 1 Y 1 A PHE -1 A PHE 12 1 Y 1 A GLN 0 A GLN 13 1 Y 1 A GLY 1 A GLY 14 1 Y 1 A THR 2 A THR 15 1 Y 1 A LYS 3 A LYS 16 1 Y 1 A ASP 4 A ASP 17 1 Y 1 A THR 196 A THR 209 1 Y 1 A HIS 197 A HIS 210 1 Y 1 A LEU 198 A LEU 211 1 Y 1 A SER 199 A SER 212 1 Y 1 A PRO 200 A PRO 213 1 Y 1 A VAL 201 A VAL 214 1 Y 1 A PRO 202 A PRO 215 1 Y 1 A PRO 377 A PRO 390 1 Y 1 A GLN 378 A GLN 391 1 Y 1 A ASP 379 A ASP 392 1 Y 1 A CYS 380 A CYS 393 1 Y 1 A SER 381 A SER 394 1 Y 1 A TRP 382 A TRP 395 1 Y 1 A ALA 399 A ALA 412 1 Y 1 A GLU 400 A GLU 413 1 Y 1 A ASN 401 A ASN 414 1 Y 1 A LYS 402 A LYS 415 1 Y 1 A SER 403 A SER 416 1 Y 1 A TRP 404 A TRP 417 1 Y 1 A ASN 405 A ASN 418 1 Y 1 A GLY 406 A GLY 419 1 Y 1 A PHE 407 A PHE 420 1 Y 1 A TRP 408 A TRP 421 1 Y 1 A ARG 409 A ARG 422 1 Y 1 A SER 410 A SER 423 1 Y 1 A ALA 411 A ALA 424 1 Y 1 A PRO 412 A PRO 425 1 Y 1 A VAL 413 A VAL 426 1 Y 1 A HIS 414 A HIS 427 1 Y 1 A PRO 415 A PRO 428 1 Y 1 A PHE 416 A PHE 429 1 Y 1 A ASN 417 A ASN 430 1 Y 1 A ALA 450 A ALA 463 1 Y 1 A LYS 451 A LYS 464 1 Y 1 A LEU 452 A LEU 465 1 Y 1 A PRO 453 A PRO 466 1 Y 1 A SER 454 A SER 467 1 Y 1 A ALA 455 A ALA 468 1 Y 1 A GLU 456 A GLU 469 1 Y 1 A GLN 457 A GLN 470 1 Y 1 A GLN 458 A GLN 471 1 Y 1 A A O O ASN HOH 6 2001 2.13 1 -3.08 0.50 120.30 117.22 A A A NE CZ NH2 ARG ARG ARG 212 212 212 N 1 A A CG CD2 HIS HIS 133 133 0.055 0.009 1.354 1.409 N 1 A A CG CD2 HIS HIS 260 260 0.056 0.009 1.354 1.410 N 1 A A CG CD2 HIS HIS 273 273 0.087 0.009 1.354 1.441 N 1 A A CG CD2 HIS HIS 276 276 0.056 0.009 1.354 1.410 N 1 A A CG CD2 HIS HIS 364 364 0.060 0.009 1.354 1.414 N 1 A PRO 23 -49.27 -16.41 1 A CYS 33 74.16 -19.14 1 A ALA 63 58.93 -123.87 1 A SER 73 -53.81 2.49 1 A ASN 98 -111.77 75.00 1 A VAL 130 -141.57 -28.94 1 A PRO 167 -82.86 42.95 1 A HIS 260 59.25 17.16 1 A ASP 351 -149.49 54.25 42.122 0.63 0.00 0.00 -0.29 0.00 -0.33 0.952 0.927 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. 0.23744 0.19038 0.19280 2.47 67.73 927 17212 5.1 98.06 16.916 0.200 RANDOM 1 THROUGHOUT OTHER 0.499 0.270 0.80 0.80 1.20 NONE MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.47 67.73 77 3483 60 0 3346 0.014 0.019 3503 0.001 0.020 2359 1.673 1.960 4765 0.956 3.000 5706 6.356 5.000 411 35.808 24.054 185 17.336 15.000 556 18.912 15.000 24 0.093 0.200 506 0.007 0.021 3896 0.001 0.020 766 0.383 0.258 2.534 70 1105 20 93.33 2.47 67.70 4AZW 18171 3.1 0.08 1 19.30 6.6 98.5 refinement REFMAC 5.6.0117 WBDD Crystal structure of monomeric WbdD. 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A LEU 5 A LEU 18 HELX_P A LEU 12 A LEU 25 1 1 8 A HIS 22 A HIS 35 HELX_P A ASP 26 A ASP 39 5 2 5 A CYS 33 A CYS 46 HELX_P A GLY 52 A GLY 65 1 3 20 A GLY 65 A GLY 78 HELX_P A SER 73 A SER 86 1 4 9 A GLN 84 A GLN 97 HELX_P A ASN 98 A ASN 111 1 5 15 A ARG 109 A ARG 122 HELX_P A ALA 116 A ALA 129 1 6 8 A VAL 130 A VAL 143 HELX_P A GLY 139 A GLY 152 1 7 10 A GLY 139 A GLY 152 HELX_P A VAL 153 A VAL 166 1 8 15 A TRP 170 A TRP 183 HELX_P A GLN 174 A GLN 187 5 9 5 A ASP 177 A ASP 190 HELX_P A ILE 182 A ILE 195 5 10 6 A MET 258 A MET 271 HELX_P A ILE 262 A ILE 275 5 11 5 A THR 264 A THR 277 HELX_P A GLN 284 A GLN 297 1 12 21 A LEU 316 A LEU 329 HELX_P A ALA 322 A ALA 335 1 13 7 A ASP 327 A ASP 340 HELX_P A LYS 345 A LYS 358 1 14 19 A ARG 353 A ARG 366 HELX_P A TRP 355 A TRP 368 5 15 3 A ASP 369 A ASP 382 HELX_P A GLY 371 A GLY 384 5 16 3 A PRO 383 A PRO 396 HELX_P A PHE 398 A PHE 411 1 17 16 A PRO 421 A PRO 434 HELX_P A GLU 432 A GLU 445 1 18 12 A PRO 433 A PRO 446 HELX_P A TRP 437 A TRP 450 5 19 5 A ASN 438 A ASN 451 HELX_P A LYS 448 A LYS 461 1 20 11 metalc 2.138 A ATP 1450 B O2G ATP 1_555 A MG 1452 D MG MG 1_555 metalc 1.976 A ATP 1450 B O3G ATP 1_555 A MG 1453 E MG MG 1_555 metalc 2.148 A ATP 1450 B O1B ATP 1_555 A MG 1453 E MG MG 1_555 metalc 1.859 A ATP 1450 B O1A ATP 1_555 A MG 1452 D MG MG 1_555 metalc 1.966 A MG 1452 D MG MG 1_555 A ASN 356 A OD1 ASN 369 1_555 metalc 2.213 A MG 1452 D MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 metalc 2.028 A MG 1452 D MG MG 1_555 A HOH 2069 F O HOH 1_555 metalc 2.188 A MG 1453 E MG MG 1_555 A GLU 274 A OE2 GLU 287 1_555 metalc 2.255 A MG 1453 E MG MG 1_555 A ASP 369 A OD1 ASP 382 1_555 metalc 2.151 A MG 1453 E MG MG 1_555 A HOH 2055 F O HOH 1_555 metalc 2.359 A MG 1453 E MG MG 1_555 A ASP 369 A OD2 ASP 382 1_555 TRANSFERASE TRANSFERASE, METHYLTRANSFERASE A GLN 420 A GLN 433 1 A PRO 421 A PRO 434 4.09 Q47592_ECOLX UNP 1 Q47592 2 458 4AZW 2 458 Q47592 A 1 15 471 1 expression tag MET -12 4AZW A Q47592 UNP 1 1 expression tag HIS -11 4AZW A Q47592 UNP 2 1 expression tag HIS -10 4AZW A Q47592 UNP 3 1 expression tag HIS -9 4AZW A Q47592 UNP 4 1 expression tag HIS -8 4AZW A Q47592 UNP 5 1 expression tag HIS -7 4AZW A Q47592 UNP 6 1 expression tag HIS -6 4AZW A Q47592 UNP 7 1 expression tag GLU -5 4AZW A Q47592 UNP 8 1 expression tag ASN -4 4AZW A Q47592 UNP 9 1 expression tag LEU -3 4AZW A Q47592 UNP 10 1 expression tag TYR -2 4AZW A Q47592 UNP 11 1 expression tag PHE -1 4AZW A Q47592 UNP 12 1 expression tag GLN 0 4AZW A Q47592 UNP 13 1 expression tag GLY 1 4AZW A Q47592 UNP 14 1 LEU conflict PHE 168 4AZW A Q47592 UNP 168 181 1 GLN conflict LYS 345 4AZW A Q47592 UNP 345 358 7 2 5 3 2 parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 103 A ALA 116 A VAL 107 A VAL 120 A THR 77 A THR 90 A ASP 82 A ASP 95 A ASN 56 A ASN 69 A LEU 60 A LEU 73 A LEU 124 A LEU 137 A LEU 128 A LEU 141 A ALA 156 A ALA 169 A GLU 160 A GLU 173 A PRO 204 A PRO 217 A SER 209 A SER 222 A PHE 187 A PHE 200 A GLU 193 A GLU 206 A ARG 212 A ARG 225 A ILE 215 A ILE 228 A PHE 218 A PHE 231 A PRO 221 A PRO 234 A HIS 224 A HIS 237 A GLN 226 A GLN 239 A ARG 241 A ARG 254 A PHE 245 A PHE 258 A TYR 249 A TYR 262 A TYR 255 A TYR 268 A SER 303 A SER 316 A GLU 309 A GLU 322 A VAL 294 A VAL 307 A GLU 299 A GLU 312 A ARG 314 A ARG 327 A LEU 315 A LEU 328 A VAL 357 A VAL 370 A VAL 359 A VAL 372 A ALA 365 A ALA 378 A LEU 367 A LEU 380 A TRP 348 A TRP 361 A HIS 349 A HIS 362 A ILE 373 A ILE 386 A VAL 374 A VAL 387 BINDING SITE FOR RESIDUE ATP A 1450 Software 20 BINDING SITE FOR RESIDUE SAM A 1451 Software 17 BINDING SITE FOR RESIDUE MG A 1452 Software 4 BINDING SITE FOR RESIDUE MG A 1453 Software 4 A PRO 229 A PRO 242 20 1_555 A HIS 237 A HIS 250 20 1_555 A ARG 241 A ARG 254 20 1_555 A TYR 243 A TYR 256 20 1_555 A LYS 252 A LYS 265 20 1_555 A PHE 254 A PHE 267 20 1_555 A GLU 274 A GLU 287 20 1_555 A MET 308 A MET 321 20 1_555 A GLU 309 A GLU 322 20 1_555 A LYS 310 A LYS 323 20 1_555 A LEU 311 A LEU 324 20 1_555 A LEU 315 A LEU 328 20 1_555 A ASN 356 A ASN 369 20 1_555 A ILE 368 A ILE 381 20 1_555 A ASP 369 A ASP 382 20 1_555 A MG 1452 D MG 20 1_555 A MG 1453 E MG 20 1_555 A HOH 2041 F HOH 20 1_555 A HOH 2055 F HOH 20 1_555 A HOH 2069 F HOH 20 1_555 A TYR 16 A TYR 29 17 1_555 A GLN 17 A GLN 30 17 1_555 A ARG 36 A ARG 49 17 1_555 A GLY 61 A GLY 74 17 1_555 A ALA 63 A ALA 76 17 1_555 A PHE 67 A PHE 80 17 1_555 A ASP 82 A ASP 95 17 1_555 A PHE 83 A PHE 96 17 1_555 A GLN 84 A GLN 97 17 1_555 A ASN 87 A ASN 100 17 1_555 A GLY 108 A GLY 121 17 1_555 A ARG 109 A ARG 122 17 1_555 A ILE 110 A ILE 123 17 1_555 A GLU 111 A GLU 124 17 1_555 A LEU 128 A LEU 141 17 1_555 A SER 129 A SER 142 17 1_555 A VAL 130 A VAL 143 17 1_555 A ASN 356 A ASN 369 4 1_555 A ASP 369 A ASP 382 4 1_555 A ATP 1450 B ATP 4 1_555 A HOH 2069 F HOH 4 1_555 A GLU 274 A GLU 287 4 1_555 A ASP 369 A ASP 382 4 1_555 A ATP 1450 B ATP 4 1_555 A HOH 2055 F HOH 4 1_555 19 P 21 21 21