1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sayed, N.
Nonin-Lecomte, S.
Rety, S.
Felden, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
43454
10.1074/JBC.M112.402693
23129767
Functional and Structural Insights of a Staphylococcus Aureus Apoptotic-Like Membrane Peptide from a Toxin-Antitoxin Module
2012
10.2210/pdb4b19/pdb
pdb_00004b19
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
FULL TOXIN OF THE TYPE I T/A SYSTEM
3459.179
PEPA1
RESIDUES 2-31
1
syn
polymer
no
no
MLIFVHIIAPVISGCAIAFFSYWLSRRNTK
MLIFVHIIAPVISGCAIAFFSYWLSRRNTK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
atom_site
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Database references
Atomic model
Data collection
Database references
Other
1
0
2012-11-14
1
1
2012-11-21
1
2
2013-01-16
2
0
2023-06-14
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_cs
_pdbx_database_status.status_code_mr
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
PDBE
Y
PDBE
2012-07-09
REL
REL
REL
REL
1280
STAPHYLOCOCCUS AUREUS
sample
NONE
LEAST RESTRAINT VIOLATIONS
1000
5
NOESY
TOCSY
COSY
3.8
pH
1.0
atm
288.0
K
REFINEMENT IN EXPLICIT DMSO CONFORMER 1=MINIMIZED AVERAGE OVER THE 20 BEST STRUCTURES
ARIA, GROMACS
2
CDCL3 / CDOH (1/1.2) AND RESIDUAL HOD
BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN
refinement
CNS
1.2
structure solution
TopSpin
TOPSIN
structure solution
CcpNmr Analysis
600
Bruker
AVANCE
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
HIS
6
n
6
HIS
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
ALA
9
n
9
ALA
9
A
PRO
10
n
10
PRO
10
A
VAL
11
n
11
VAL
11
A
ILE
12
n
12
ILE
12
A
SER
13
n
13
SER
13
A
GLY
14
n
14
GLY
14
A
CYS
15
n
15
CYS
15
A
ALA
16
n
16
ALA
16
A
ILE
17
n
17
ILE
17
A
ALA
18
n
18
ALA
18
A
PHE
19
n
19
PHE
19
A
PHE
20
n
20
PHE
20
A
SER
21
n
21
SER
21
A
TYR
22
n
22
TYR
22
A
TRP
23
n
23
TRP
23
A
LEU
24
n
24
LEU
24
A
SER
25
n
25
SER
25
A
ARG
26
n
26
ARG
26
A
ARG
27
n
27
ARG
27
A
ASN
28
n
28
ASN
28
A
THR
29
n
29
THR
29
A
LYS
30
n
30
LYS
30
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
5
A
A
O
HG
ILE
CYS
12
15
1.58
1
A
ASN
28
-148.30
-63.02
2
A
LEU
2
-140.25
37.33
2
A
VAL
5
-174.50
-39.51
2
A
ILE
8
-95.36
-73.72
2
A
ASN
28
-141.75
-77.04
2
A
THR
29
174.10
-42.70
3
A
LEU
2
-145.30
-75.61
3
A
ILE
7
-164.59
-37.82
3
A
ARG
26
-83.64
47.20
3
A
ASN
28
-130.60
-85.60
4
A
LEU
2
-110.91
-169.92
4
A
VAL
5
176.28
-43.44
4
A
ALA
9
178.56
-67.06
4
A
ASN
28
-142.30
-80.82
5
A
ASN
28
-158.68
-62.51
S. aureus pepA1 NMR structure
1
N
N
A
MET
1
A
MET
1
HELX_P
A
VAL
5
A
VAL
5
5
1
5
A
VAL
11
A
VAL
11
HELX_P
A
ASN
28
A
ASN
28
1
2
18
TOXIN
TOXIN, TOXIN APOPTOTIC PEPTIDE, APOPTOSIS
D6T5T9_STAAU
UNP
1
D6T5T9
2
31
4B19
1
30
D6T5T9
A
1
1
30
1
P 1