0.014603
0.000000
0.000000
0.000000
0.011832
0.000000
0.000000
0.000000
0.007952
0.00000
0.00000
0.00000
Dalhus, B.
Nilsen, L.
Korvald, H.
Huffman, J.
Forstrom, R.J.
McMurray, C.T.
Alseth, I.
Tainer, J.A.
Bjoras, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
68.480
84.520
125.750
C5 H11 O6 P
198.111
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
ABASIC DIDEOXYRIBOSE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
21
154
10.1016/J.STR.2012.11.004
23245849
Sculpting of DNA at Abasic Sites by DNA Glycosylase Homolog Mag2.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.9200
1.0
ID14-4
ESRF
0.9200
SYNCHROTRON
ESRF BEAMLINE ID14-4
26362.113
MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2
3.2.2.21
1
man
polymer
3185.076
5'-D(*GP*CP*TP*AP*CP*(3DR)P*CP*AP*TP*CP*GP)-3'
1
syn
polymer
3414.234
5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3'
1
syn
polymer
18.015
water
245
nat
water
3-METHYLADENINE DNA GLYCOSIDASE 2,3MEA DNA GLYCOSYLASE 2
ABASIC DNA
no
no
MGSSHHHHHSSGLVPRGSHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNS
IINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKR
WTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLHRKGQ
MGSSHHHHHSSGLVPRGSHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNS
IINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKR
WTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLHRKGQ
A
polypeptide(L)
no
yes
(DG)(DC)(DT)(DA)(DC)(3DR)(DC)(DA)(DT)(DC)(DG)
GCTACNCATCG
X
polydeoxyribonucleotide
no
no
(DC)(DG)(DA)(DT)(DG)(DG)(DG)(DT)(DA)(DG)(DC)
CGATGGGTAGC
Y
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
4896
SCHIZOSACCHAROMYCES POMBE
511693
ESCHERICHIA COLI
BL21
PET28
PLASMID
2.8
56
NONE
0.40 M (NH4)H2PO4 (NOT PH ADJUSTED), 6% 1,6-HEXANEDIOL
-8.735
1
19
X
1
Y
22
1.753
X_DG1:DC22_Y
1
-3.081
-1.066
0.000
-0.486
-6.169
1
19
X
2
Y
21
-1.182
X_DC2:DG21_Y
2
-7.122
-0.282
0.300
-0.174
4.151
1
20
X
3
Y
20
-1.287
X_DT3:DA20_Y
3
-12.067
0.425
-0.083
-0.190
2.667
1
20
X
4
Y
19
-2.047
X_DA4:DT19_Y
4
-2.394
-0.229
0.194
-0.089
16.562
1
19
X
5
Y
18
-1.171
X_DC5:DG18_Y
5
-9.681
0.274
-0.184
0.027
-41.717
1
19
X
7
Y
16
-8.998
X_DC7:DG16_Y
6
5.821
-0.296
1.306
0.450
-18.101
1
20
X
8
Y
15
5.868
X_DA8:DT15_Y
7
4.409
-0.175
-0.176
-0.027
-0.954
1
20
X
9
Y
14
1.567
X_DT9:DA14_Y
8
-3.327
-0.104
-0.090
-0.167
-1.259
1
19
X
10
Y
13
1.664
X_DC10:DG13_Y
9
-6.657
0.104
-0.073
-0.012
9.596
1
19
X
11
Y
12
0.766
X_DG11:DC12_Y
10
-13.145
-0.149
0.341
-0.214
3.223
36.518
X
X
1
2
6.177
Y
Y
22
21
3.280
3.857
-0.697
-0.932
XX_DG1DC2:DG21DC22_YY
1
-3.953
6.331
36.112
-2.020
0.566
3.097
32.743
X
X
2
3
12.110
Y
Y
21
20
3.112
6.766
0.081
0.292
XX_DC2DT3:DA20DG21_YY
2
3.685
-6.595
31.848
-0.605
0.469
2.903
45.718
X
X
3
4
-10.745
Y
Y
20
19
3.311
-8.301
0.228
1.965
XX_DT3DA4:DT19DA20_YY
3
-2.979
3.857
44.904
3.224
-0.542
2.951
28.489
X
X
4
5
8.747
Y
Y
19
18
3.004
4.279
0.075
-0.054
XX_DA4DC5:DG18DT19_YY
4
3.367
-6.882
27.975
-1.008
0.554
3.772
29.971
X
X
7
8
31.636
Y
Y
16
15
3.263
15.586
1.904
2.031
XX_DC7DA8:DT15DG16_YY
5
-1.104
2.241
25.656
0.186
-3.946
2.796
27.104
X
X
8
9
18.756
Y
Y
15
14
2.999
8.640
-0.586
-0.222
XX_DA8DT9:DA14DT15_YY
6
-0.924
2.005
25.698
-2.462
1.038
3.361
35.710
X
X
9
10
11.090
Y
Y
14
13
3.373
6.754
0.061
0.285
XX_DT9DC10:DG13DA14_YY
7
3.125
-5.132
34.950
-0.552
0.371
3.451
32.071
X
X
10
11
19.747
Y
Y
13
12
3.175
10.701
-0.487
1.298
XX_DC10DG11:DC12DG13_YY
8
-2.333
4.306
30.189
0.338
0.443
repository
Initial release
Database references
1
0
2013-01-09
1
1
2013-01-30
UNPRECEDENTED SCULPTING OF DNA AT ABASIC SITES BY DNA GLYCOSYLASE HOMOLOG MAG2
UNPRECEDENTED SCULPTING OF DNA AT ABASIC SITES BY DNA GLYCOSYLASE HOMOLOG MAG2
UNPRECEDENTED SCULPTING OF DNA AT ABASIC SITES BY DNA GLYCOSYLASE HOMOLOG MAG2
PDBE
Y
PDBE
2012-07-12
REL
1
A
O
HOH
2074
6.12
HOH
water
32630
SYNTHETIC CONSTRUCT
sample
32630
SYNTHETIC CONSTRUCT
sample
CRYSTALLIZED PROTEIN CONTAIN N-TERMINAL UNCLEAVED
HEKSAHISTIDINE TAG (MGSSHHHHHSSGLVPRGSH)
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2105
4
HOH
HOH
2105
A
HOH
2106
4
HOH
HOH
2106
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2108
4
HOH
HOH
2108
A
HOH
2109
4
HOH
HOH
2109
A
HOH
2110
4
HOH
HOH
2110
A
HOH
2111
4
HOH
HOH
2111
A
HOH
2112
4
HOH
HOH
2112
A
HOH
2113
4
HOH
HOH
2113
A
HOH
2114
4
HOH
HOH
2114
A
HOH
2115
4
HOH
HOH
2115
A
HOH
2116
4
HOH
HOH
2116
A
HOH
2117
4
HOH
HOH
2117
A
HOH
2118
4
HOH
HOH
2118
A
HOH
2119
4
HOH
HOH
2119
A
HOH
2120
4
HOH
HOH
2120
A
HOH
2121
4
HOH
HOH
2121
A
HOH
2122
4
HOH
HOH
2122
A
HOH
2123
4
HOH
HOH
2123
A
HOH
2124
4
HOH
HOH
2124
A
HOH
2125
4
HOH
HOH
2125
A
HOH
2126
4
HOH
HOH
2126
A
HOH
2127
4
HOH
HOH
2127
A
HOH
2128
4
HOH
HOH
2128
A
HOH
2129
4
HOH
HOH
2129
A
HOH
2130
4
HOH
HOH
2130
A
HOH
2131
4
HOH
HOH
2131
A
HOH
2132
4
HOH
HOH
2132
A
HOH
2133
4
HOH
HOH
2133
A
HOH
2134
4
HOH
HOH
2134
A
HOH
2135
4
HOH
HOH
2135
A
HOH
2136
4
HOH
HOH
2136
A
HOH
2137
4
HOH
HOH
2137
A
HOH
2138
4
HOH
HOH
2138
A
HOH
2139
4
HOH
HOH
2139
A
HOH
2140
4
HOH
HOH
2140
A
HOH
2141
4
HOH
HOH
2141
A
HOH
2142
4
HOH
HOH
2142
A
HOH
2143
4
HOH
HOH
2143
A
HOH
2144
4
HOH
HOH
2144
A
HOH
2145
4
HOH
HOH
2145
A
HOH
2146
4
HOH
HOH
2146
A
HOH
2147
4
HOH
HOH
2147
A
HOH
2148
4
HOH
HOH
2148
A
HOH
2149
4
HOH
HOH
2149
A
HOH
2150
4
HOH
HOH
2150
A
HOH
2151
4
HOH
HOH
2151
A
HOH
2152
4
HOH
HOH
2152
A
HOH
2153
4
HOH
HOH
2153
A
HOH
2154
4
HOH
HOH
2154
A
HOH
2155
4
HOH
HOH
2155
A
HOH
2156
4
HOH
HOH
2156
A
HOH
2157
4
HOH
HOH
2157
A
HOH
2158
4
HOH
HOH
2158
A
HOH
2159
4
HOH
HOH
2159
A
HOH
2160
4
HOH
HOH
2160
A
HOH
2161
4
HOH
HOH
2161
A
HOH
2162
4
HOH
HOH
2162
A
HOH
2163
4
HOH
HOH
2163
A
HOH
2164
4
HOH
HOH
2164
A
HOH
2165
4
HOH
HOH
2165
A
HOH
2166
4
HOH
HOH
2166
A
HOH
2167
4
HOH
HOH
2167
A
HOH
2168
4
HOH
HOH
2168
A
HOH
2169
4
HOH
HOH
2169
A
HOH
2170
4
HOH
HOH
2170
A
HOH
2171
4
HOH
HOH
2171
A
HOH
2172
4
HOH
HOH
2172
A
HOH
2173
4
HOH
HOH
2173
A
HOH
2174
4
HOH
HOH
2174
A
HOH
2175
4
HOH
HOH
2175
A
HOH
2176
4
HOH
HOH
2176
A
HOH
2177
4
HOH
HOH
2177
A
HOH
2178
4
HOH
HOH
2178
A
HOH
2179
4
HOH
HOH
2179
A
HOH
2180
4
HOH
HOH
2180
A
HOH
2181
4
HOH
HOH
2181
A
HOH
2182
4
HOH
HOH
2182
A
HOH
2183
4
HOH
HOH
2183
A
HOH
2184
4
HOH
HOH
2184
A
HOH
2185
4
HOH
HOH
2185
A
HOH
2186
4
HOH
HOH
2186
A
HOH
2187
4
HOH
HOH
2187
A
HOH
2188
4
HOH
HOH
2188
A
HOH
2189
4
HOH
HOH
2189
A
HOH
2190
4
HOH
HOH
2190
A
HOH
2191
4
HOH
HOH
2191
A
HOH
2192
4
HOH
HOH
2192
A
HOH
2193
4
HOH
HOH
2193
A
HOH
2194
4
HOH
HOH
2194
A
HOH
2195
4
HOH
HOH
2195
A
HOH
2196
4
HOH
HOH
2196
A
HOH
2197
4
HOH
HOH
2197
A
HOH
2198
4
HOH
HOH
2198
A
HOH
2001
4
HOH
HOH
2001
X
HOH
2002
4
HOH
HOH
2002
X
HOH
2003
4
HOH
HOH
2003
X
HOH
2004
4
HOH
HOH
2004
X
HOH
2005
4
HOH
HOH
2005
X
HOH
2006
4
HOH
HOH
2006
X
HOH
2007
4
HOH
HOH
2007
X
HOH
2008
4
HOH
HOH
2008
X
HOH
2009
4
HOH
HOH
2009
X
HOH
2010
4
HOH
HOH
2010
X
HOH
2011
4
HOH
HOH
2011
X
HOH
2012
4
HOH
HOH
2012
X
HOH
2013
4
HOH
HOH
2013
X
HOH
2014
4
HOH
HOH
2014
X
HOH
2015
4
HOH
HOH
2015
X
HOH
2016
4
HOH
HOH
2016
X
HOH
2017
4
HOH
HOH
2017
X
HOH
2018
4
HOH
HOH
2018
X
HOH
2019
4
HOH
HOH
2019
X
HOH
2020
4
HOH
HOH
2020
X
HOH
2021
4
HOH
HOH
2021
X
HOH
2022
4
HOH
HOH
2022
X
HOH
2001
4
HOH
HOH
2001
Y
HOH
2002
4
HOH
HOH
2002
Y
HOH
2003
4
HOH
HOH
2003
Y
HOH
2004
4
HOH
HOH
2004
Y
HOH
2005
4
HOH
HOH
2005
Y
HOH
2006
4
HOH
HOH
2006
Y
HOH
2007
4
HOH
HOH
2007
Y
HOH
2008
4
HOH
HOH
2008
Y
HOH
2009
4
HOH
HOH
2009
Y
HOH
2010
4
HOH
HOH
2010
Y
HOH
2011
4
HOH
HOH
2011
Y
HOH
2012
4
HOH
HOH
2012
Y
HOH
2013
4
HOH
HOH
2013
Y
HOH
2014
4
HOH
HOH
2014
Y
HOH
2015
4
HOH
HOH
2015
Y
HOH
2016
4
HOH
HOH
2016
Y
HOH
2017
4
HOH
HOH
2017
Y
HOH
2018
4
HOH
HOH
2018
Y
HOH
2019
4
HOH
HOH
2019
Y
HOH
2020
4
HOH
HOH
2020
Y
HOH
2021
4
HOH
HOH
2021
Y
HOH
2022
4
HOH
HOH
2022
Y
HOH
2023
4
HOH
HOH
2023
Y
HOH
2024
4
HOH
HOH
2024
Y
HOH
2025
4
HOH
HOH
2025
Y
n
1
-18
A
n
2
-17
A
n
3
-16
A
n
4
-15
A
n
5
-14
A
n
6
-13
A
n
7
-12
A
n
8
-11
A
n
9
-10
A
n
10
-9
A
n
11
-8
A
n
12
-7
A
n
13
-6
A
n
14
-5
A
n
15
-4
A
n
16
-3
A
n
17
-2
A
n
18
-1
A
n
19
0
A
n
20
1
A
n
21
2
A
n
22
3
A
ASP
4
n
23
ASP
4
A
SER
5
n
24
SER
5
A
ASP
6
n
25
ASP
6
A
TYR
7
n
26
TYR
7
A
LYS
8
n
27
LYS
8
A
ARG
9
n
28
ARG
9
A
ALA
10
n
29
ALA
10
A
GLU
11
n
30
GLU
11
A
LYS
12
n
31
LYS
12
A
HIS
13
n
32
HIS
13
A
LEU
14
n
33
LEU
14
A
SER
15
n
34
SER
15
A
SER
16
n
35
SER
16
A
ILE
17
n
36
ILE
17
A
ASP
18
n
37
ASP
18
A
ASN
19
n
38
ASN
19
A
LYS
20
n
39
LYS
20
A
TRP
21
n
40
TRP
21
A
SER
22
n
41
SER
22
A
SER
23
n
42
SER
23
A
LEU
24
n
43
LEU
24
A
VAL
25
n
44
VAL
25
A
LYS
26
n
45
LYS
26
A
LYS
27
n
46
LYS
27
A
VAL
28
n
47
VAL
28
A
GLY
29
n
48
GLY
29
A
PRO
30
n
49
PRO
30
A
CYS
31
n
50
CYS
31
A
THR
32
n
51
THR
32
A
LEU
33
n
52
LEU
33
A
THR
34
n
53
THR
34
A
PRO
35
n
54
PRO
35
A
HIS
36
n
55
HIS
36
A
PRO
37
n
56
PRO
37
A
GLU
38
n
57
GLU
38
A
HIS
39
n
58
HIS
39
A
ALA
40
n
59
ALA
40
A
PRO
41
n
60
PRO
41
A
TYR
42
n
61
TYR
42
A
GLU
43
n
62
GLU
43
A
GLY
44
n
63
GLY
44
A
ILE
45
n
64
ILE
45
A
ILE
46
n
65
ILE
46
A
ARG
47
n
66
ARG
47
A
ALA
48
n
67
ALA
48
A
ILE
49
n
68
ILE
49
A
THR
50
n
69
THR
50
A
SER
51
n
70
SER
51
A
GLN
52
n
71
GLN
52
A
LYS
53
n
72
LYS
53
A
LEU
54
n
73
LEU
54
A
SER
55
n
74
SER
55
A
ASP
56
n
75
ASP
56
A
ALA
57
n
76
ALA
57
A
ALA
58
n
77
ALA
58
A
THR
59
n
78
THR
59
A
ASN
60
n
79
ASN
60
A
SER
61
n
80
SER
61
A
ILE
62
n
81
ILE
62
A
ILE
63
n
82
ILE
63
A
ASN
64
n
83
ASN
64
A
LYS
65
n
84
LYS
65
A
PHE
66
n
85
PHE
66
A
CYS
67
n
86
CYS
67
A
THR
68
n
87
THR
68
A
GLN
69
n
88
GLN
69
A
CYS
70
n
89
CYS
70
A
SER
71
n
90
SER
71
A
ASP
72
n
91
ASP
72
A
ASN
73
n
92
ASN
73
A
ASP
74
n
93
ASP
74
A
GLU
75
n
94
GLU
75
A
PHE
76
n
95
PHE
76
A
PRO
77
n
96
PRO
77
A
THR
78
n
97
THR
78
A
PRO
79
n
98
PRO
79
A
LYS
80
n
99
LYS
80
A
GLN
81
n
100
GLN
81
A
ILE
82
n
101
ILE
82
A
MET
83
n
102
MET
83
A
GLU
84
n
103
GLU
84
A
THR
85
n
104
THR
85
A
ASP
86
n
105
ASP
86
A
VAL
87
n
106
VAL
87
A
GLU
88
n
107
GLU
88
A
THR
89
n
108
THR
89
A
LEU
90
n
109
LEU
90
A
HIS
91
n
110
HIS
91
A
GLU
92
n
111
GLU
92
A
CYS
93
n
112
CYS
93
A
GLY
94
n
113
GLY
94
A
PHE
95
n
114
PHE
95
A
SER
96
n
115
SER
96
A
LYS
97
n
116
LYS
97
A
LEU
98
n
117
LEU
98
A
LYS
99
n
118
LYS
99
A
SER
100
n
119
SER
100
A
GLN
101
n
120
GLN
101
A
GLU
102
n
121
GLU
102
A
ILE
103
n
122
ILE
103
A
HIS
104
n
123
HIS
104
A
ILE
105
n
124
ILE
105
A
VAL
106
n
125
VAL
106
A
ALA
107
n
126
ALA
107
A
GLU
108
n
127
GLU
108
A
ALA
109
n
128
ALA
109
A
ALA
110
n
129
ALA
110
A
LEU
111
n
130
LEU
111
A
ASN
112
n
131
ASN
112
A
LYS
113
n
132
LYS
113
A
GLN
114
n
133
GLN
114
A
ILE
115
n
134
ILE
115
A
PRO
116
n
135
PRO
116
A
SER
117
n
136
SER
117
A
LYS
118
n
137
LYS
118
A
SER
119
n
138
SER
119
A
GLU
120
n
139
GLU
120
A
ILE
121
n
140
ILE
121
A
GLU
122
n
141
GLU
122
A
LYS
123
n
142
LYS
123
A
MET
124
n
143
MET
124
A
SER
125
n
144
SER
125
A
GLU
126
n
145
GLU
126
A
GLU
127
n
146
GLU
127
A
GLU
128
n
147
GLU
128
A
LEU
129
n
148
LEU
129
A
MET
130
n
149
MET
130
A
GLU
131
n
150
GLU
131
A
SER
132
n
151
SER
132
A
LEU
133
n
152
LEU
133
A
SER
134
n
153
SER
134
A
LYS
135
n
154
LYS
135
A
ILE
136
n
155
ILE
136
A
LYS
137
n
156
LYS
137
A
GLY
138
n
157
GLY
138
A
VAL
139
n
158
VAL
139
A
LYS
140
n
159
LYS
140
A
ARG
141
n
160
ARG
141
A
TRP
142
n
161
TRP
142
A
THR
143
n
162
THR
143
A
ILE
144
n
163
ILE
144
A
GLU
145
n
164
GLU
145
A
MET
146
n
165
MET
146
A
TYR
147
n
166
TYR
147
A
SER
148
n
167
SER
148
A
ILE
149
n
168
ILE
149
A
PHE
150
n
169
PHE
150
A
THR
151
n
170
THR
151
A
LEU
152
n
171
LEU
152
A
GLY
153
n
172
GLY
153
A
ARG
154
n
173
ARG
154
A
LEU
155
n
174
LEU
155
A
ASP
156
n
175
ASP
156
A
ILE
157
n
176
ILE
157
A
MET
158
n
177
MET
158
A
PRO
159
n
178
PRO
159
A
ALA
160
n
179
ALA
160
A
ASP
161
n
180
ASP
161
A
ASP
162
n
181
ASP
162
A
SER
163
n
182
SER
163
A
THR
164
n
183
THR
164
A
LEU
165
n
184
LEU
165
A
LYS
166
n
185
LYS
166
A
ASN
167
n
186
ASN
167
A
GLU
168
n
187
GLU
168
A
ALA
169
n
188
ALA
169
A
LYS
170
n
189
LYS
170
A
GLU
171
n
190
GLU
171
A
PHE
172
n
191
PHE
172
A
PHE
173
n
192
PHE
173
A
GLY
174
n
193
GLY
174
A
LEU
175
n
194
LEU
175
A
SER
176
n
195
SER
176
A
SER
177
n
196
SER
177
A
LYS
178
n
197
LYS
178
A
PRO
179
n
198
PRO
179
A
GLN
180
n
199
GLN
180
A
THR
181
n
200
THR
181
A
GLU
182
n
201
GLU
182
A
GLU
183
n
202
GLU
183
A
VAL
184
n
203
VAL
184
A
GLU
185
n
204
GLU
185
A
LYS
186
n
205
LYS
186
A
LEU
187
n
206
LEU
187
A
THR
188
n
207
THR
188
A
LYS
189
n
208
LYS
189
A
PRO
190
n
209
PRO
190
A
CYS
191
n
210
CYS
191
A
LYS
192
n
211
LYS
192
A
PRO
193
n
212
PRO
193
A
TYR
194
n
213
TYR
194
A
ARG
195
n
214
ARG
195
A
THR
196
n
215
THR
196
A
ILE
197
n
216
ILE
197
A
ALA
198
n
217
ALA
198
A
ALA
199
n
218
ALA
199
A
TRP
200
n
219
TRP
200
A
TYR
201
n
220
TYR
201
A
LEU
202
n
221
LEU
202
A
TRP
203
n
222
TRP
203
A
GLN
204
n
223
GLN
204
A
ILE
205
n
224
ILE
205
A
PRO
206
n
225
PRO
206
A
LYS
207
n
226
LYS
207
A
LEU
208
n
227
LEU
208
A
HIS
209
n
228
HIS
209
A
n
229
210
A
n
230
211
A
n
231
212
A
n
232
213
A
DG
1
n
1
DG
1
X
DC
2
n
2
DC
2
X
DT
3
n
3
DT
3
X
DA
4
n
4
DA
4
X
DC
5
n
5
DC
5
X
3DR
6
n
6
3DR
6
X
DC
7
n
7
DC
7
X
DA
8
n
8
DA
8
X
DT
9
n
9
DT
9
X
DC
10
n
10
DC
10
X
DG
11
n
11
DG
11
X
DC
12
n
1
DC
12
Y
DG
13
n
2
DG
13
Y
DA
14
n
3
DA
14
Y
DT
15
n
4
DT
15
Y
DG
16
n
5
DG
16
Y
DG
17
n
6
DG
17
Y
DG
18
n
7
DG
18
Y
DT
19
n
8
DT
19
Y
DA
20
n
9
DA
20
Y
DG
21
n
10
DG
21
Y
DC
22
n
11
DC
22
Y
author_and_software_defined_assembly
PISA
3
trimeric
3270
-19.0
13140
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
2081
D
HOH
1
A
CA
HIS
209
A
CA
HIS
228
1
Y
1
A
C
HIS
209
A
C
HIS
228
1
Y
1
A
O
HIS
209
A
O
HIS
228
1
Y
1
A
CB
HIS
209
A
CB
HIS
228
1
Y
1
A
CG
HIS
209
A
CG
HIS
228
1
Y
1
A
ND1
HIS
209
A
ND1
HIS
228
1
Y
1
A
CD2
HIS
209
A
CD2
HIS
228
1
Y
1
A
CE1
HIS
209
A
CE1
HIS
228
1
Y
1
A
NE2
HIS
209
A
NE2
HIS
228
1
Y
1
A
MET
-18
A
MET
1
1
Y
1
A
GLY
-17
A
GLY
2
1
Y
1
A
SER
-16
A
SER
3
1
Y
1
A
SER
-15
A
SER
4
1
Y
1
A
HIS
-14
A
HIS
5
1
Y
1
A
HIS
-13
A
HIS
6
1
Y
1
A
HIS
-12
A
HIS
7
1
Y
1
A
HIS
-11
A
HIS
8
1
Y
1
A
HIS
-10
A
HIS
9
1
Y
1
A
SER
-9
A
SER
10
1
Y
1
A
SER
-8
A
SER
11
1
Y
1
A
GLY
-7
A
GLY
12
1
Y
1
A
LEU
-6
A
LEU
13
1
Y
1
A
VAL
-5
A
VAL
14
1
Y
1
A
PRO
-4
A
PRO
15
1
Y
1
A
ARG
-3
A
ARG
16
1
Y
1
A
GLY
-2
A
GLY
17
1
Y
1
A
SER
-1
A
SER
18
1
Y
1
A
HIS
0
A
HIS
19
1
Y
1
A
MET
1
A
MET
20
1
Y
1
A
SER
2
A
SER
21
1
Y
1
A
LYS
3
A
LYS
22
1
Y
1
A
ARG
210
A
ARG
229
1
Y
1
A
LYS
211
A
LYS
230
1
Y
1
A
GLY
212
A
GLY
231
1
Y
1
A
GLN
213
A
GLN
232
1
Y
1
A
A
O
O
HOH
HOH
2118
2118
2.07
1_555
3_555
1
A
ILE
17
-84.65
-151.07
1
A
ASP
74
56.58
16.25
1
A
THR
151
-107.78
-62.55
1
A
PRO
193
-95.73
31.49
1
A
LYS
207
-68.58
3.66
CNS_TOPPAR:PROTEIN_REP.PARAM
CNS_TOPPAR:PROTEIN.TOP
DNA-RNA_REP-CUSTOM.PARAM
DNA-RNA-CUSTOM.TOP
CNS_TOPPAR:WATER_REP.PARAM
CNS_TOPPAR:WATER.TOP
CNS_TOPPAR:ION.PARAM
CNS_TOPPAR:ION.TOP
24.9
-4.293
0.000
0.000
2.499
0.000
1.794
0.2813
0.2805
0.2805
1.90
50
1345
26375
4.6
95.1
RANDOM
1
THROUGHOUT
0.0
OTHER
41.6549
0.380027
0.27
0.22
0.19
0.19
1.90
50
245
2319
0
437
1637
0.00579
1.13309
18.93926
2.97871
0.3115
0.2408
1.97
123
2178
10
5.3
80.3
22.7
1.90
50.00
4B22
27720
0.0
0.06
1
16.20
4.3
99.3
1.90
2.00
4.30
0.32
1
3.8
96.0
refinement
CNS
1.1
data reduction
MOSFLM
data scaling
SCALA
phasing
CNS
MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2 (E.C.3.2.2.21)
Unprecedented sculpting of DNA at abasic sites by DNA glycosylase homolog Mag2
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
ASP
4
A
ASP
23
HELX_P
A
SER
15
A
SER
34
1
1
12
A
ASP
18
A
ASP
37
HELX_P
A
GLY
29
A
GLY
48
1
2
12
A
ALA
40
A
ALA
59
HELX_P
A
GLN
52
A
GLN
71
1
3
13
A
SER
55
A
SER
74
HELX_P
A
CYS
70
A
CYS
89
1
4
16
A
THR
78
A
THR
97
HELX_P
A
GLU
84
A
GLU
103
1
5
7
A
ASP
86
A
ASP
105
HELX_P
A
CYS
93
A
CYS
112
1
6
8
A
SER
96
A
SER
115
HELX_P
A
ASN
112
A
ASN
131
1
7
17
A
SER
117
A
SER
136
HELX_P
A
LYS
123
A
LYS
142
1
8
7
A
SER
125
A
SER
144
HELX_P
A
SER
134
A
SER
153
1
9
10
A
LYS
140
A
LYS
159
HELX_P
A
THR
151
A
THR
170
1
10
12
A
ASP
162
A
ASP
181
HELX_P
A
PHE
173
A
PHE
192
1
11
12
A
GLN
180
A
GLN
199
HELX_P
A
THR
188
A
THR
207
1
12
9
A
LYS
189
A
LYS
208
HELX_P
A
LYS
192
A
LYS
211
5
13
4
A
TYR
194
A
TYR
213
HELX_P
A
GLN
204
A
GLN
223
1
14
11
A
ILE
205
A
ILE
224
HELX_P
A
LEU
208
A
LEU
227
5
15
4
covale
1.598
X
3DR
6
B
P
3DR
6
1_555
X
DC
5
B
O3'
DC
5
1_555
covale
1.557
X
3DR
6
B
O3'
3DR
6
1_555
X
DC
7
B
P
DC
7
1_555
hydrog
WATSON-CRICK
X
DG
1
B
N1
DG
1
1_555
Y
DC
22
C
N3
DC
11
1_555
hydrog
WATSON-CRICK
X
DG
1
B
N2
DG
1
1_555
Y
DC
22
C
O2
DC
11
1_555
hydrog
WATSON-CRICK
X
DG
1
B
O6
DG
1
1_555
Y
DC
22
C
N4
DC
11
1_555
hydrog
WATSON-CRICK
X
DC
2
B
N3
DC
2
1_555
Y
DG
21
C
N1
DG
10
1_555
hydrog
WATSON-CRICK
X
DC
2
B
N4
DC
2
1_555
Y
DG
21
C
O6
DG
10
1_555
hydrog
WATSON-CRICK
X
DC
2
B
O2
DC
2
1_555
Y
DG
21
C
N2
DG
10
1_555
hydrog
WATSON-CRICK
X
DT
3
B
N3
DT
3
1_555
Y
DA
20
C
N1
DA
9
1_555
hydrog
WATSON-CRICK
X
DT
3
B
O4
DT
3
1_555
Y
DA
20
C
N6
DA
9
1_555
hydrog
WATSON-CRICK
X
DA
4
B
N1
DA
4
1_555
Y
DT
19
C
N3
DT
8
1_555
hydrog
WATSON-CRICK
X
DA
4
B
N6
DA
4
1_555
Y
DT
19
C
O4
DT
8
1_555
hydrog
WATSON-CRICK
X
DC
5
B
N3
DC
5
1_555
Y
DG
18
C
N1
DG
7
1_555
hydrog
WATSON-CRICK
X
DC
5
B
N4
DC
5
1_555
Y
DG
18
C
O6
DG
7
1_555
hydrog
WATSON-CRICK
X
DC
5
B
O2
DC
5
1_555
Y
DG
18
C
N2
DG
7
1_555
hydrog
WATSON-CRICK
X
DC
7
B
N3
DC
7
1_555
Y
DG
16
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
X
DC
7
B
N4
DC
7
1_555
Y
DG
16
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
X
DC
7
B
O2
DC
7
1_555
Y
DG
16
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
X
DA
8
B
N1
DA
8
1_555
Y
DT
15
C
N3
DT
4
1_555
hydrog
WATSON-CRICK
X
DA
8
B
N6
DA
8
1_555
Y
DT
15
C
O4
DT
4
1_555
hydrog
WATSON-CRICK
X
DT
9
B
N3
DT
9
1_555
Y
DA
14
C
N1
DA
3
1_555
hydrog
WATSON-CRICK
X
DT
9
B
O4
DT
9
1_555
Y
DA
14
C
N6
DA
3
1_555
hydrog
WATSON-CRICK
X
DC
10
B
N3
DC
10
1_555
Y
DG
13
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
X
DC
10
B
N4
DC
10
1_555
Y
DG
13
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
X
DC
10
B
O2
DC
10
1_555
Y
DG
13
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
X
DG
11
B
N1
DG
11
1_555
Y
DC
12
C
N3
DC
1
1_555
hydrog
WATSON-CRICK
X
DG
11
B
N2
DG
11
1_555
Y
DC
12
C
O2
DC
1
1_555
hydrog
WATSON-CRICK
X
DG
11
B
O6
DG
11
1_555
Y
DC
12
C
N4
DC
1
1_555
HYDROLASE
HYDROLASE, HELIX-HAIRPIN-HELIX DNA GLYCOSYLASE HOMOLOGUE
A
LYS
192
A
LYS
211
1
A
PRO
193
A
PRO
212
0.25
MAG2_SCHPO
UNP
1
O94468
4B22
PDB
2
4B22
4B22
PDB
3
4B22
1
213
4B22
1
213
O94468
A
1
20
232
1
11
4B22
1
11
4B22
X
2
1
11
12
22
4B22
12
22
4B22
Y
3
1
11
1
expression tag
MET
-18
4B22
A
O94468
UNP
1
1
expression tag
GLY
-17
4B22
A
O94468
UNP
2
1
expression tag
SER
-16
4B22
A
O94468
UNP
3
1
expression tag
SER
-15
4B22
A
O94468
UNP
4
1
expression tag
HIS
-14
4B22
A
O94468
UNP
5
1
expression tag
HIS
-13
4B22
A
O94468
UNP
6
1
expression tag
HIS
-12
4B22
A
O94468
UNP
7
1
expression tag
HIS
-11
4B22
A
O94468
UNP
8
1
expression tag
HIS
-10
4B22
A
O94468
UNP
9
1
expression tag
SER
-9
4B22
A
O94468
UNP
10
1
expression tag
SER
-8
4B22
A
O94468
UNP
11
1
expression tag
GLY
-7
4B22
A
O94468
UNP
12
1
expression tag
LEU
-6
4B22
A
O94468
UNP
13
1
expression tag
VAL
-5
4B22
A
O94468
UNP
14
1
expression tag
PRO
-4
4B22
A
O94468
UNP
15
1
expression tag
ARG
-3
4B22
A
O94468
UNP
16
1
expression tag
GLY
-2
4B22
A
O94468
UNP
17
1
expression tag
SER
-1
4B22
A
O94468
UNP
18
1
expression tag
HIS
0
4B22
A
O94468
UNP
19
23
I 2 2 2