1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Loening, N.M.
Wilson, Z.N.
Zobel-Thropp, P.A.
Binford, G.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Plos One
1932-6203
8
54401
10.1371/JOURNAL.PONE.0054401
23342149
Solution Structures of Two Homologous Venom Peptides from Sicarius Dolichocephalus
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3570.006
S64
1
man
polymer
no
no
SECVENGGFCPDPEKMGDWCCGRCIRNECRNG
SECVENGGFCPDPEKMGDWCCGRCIRNECRNG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
TRANSCRIPT IDENTIFIED FROM CDNA LIBRARY CONSTRUCTED FROM VENOM GLAND MRNA
571538
VENOM GLAND
SICARIUS DOLICHOCEPHALUS
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PLICC
repository
Initial release
Database references
1
0
2013-01-16
1
1
2013-02-06
S67
PDBE
Y
PDBE
2012-07-18
REL
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED SAMPLES. STRUCTURES CREATED BY ARIA2 WITH WATER REFINEMENT.
TOTAL ENERGY
100
20
15N HMQC
1H NOESY
1H TOCSY
CCCONNH
HBHACONNH
HCCONNH
HNCACB
HNCACO
HNCO
HNCOCACB
13C CT- HSQC2
13C HSQC-NOESY
13C HSQC2
15N HMQC2
15N HSQC- NOESY
1H NOESY (100MS)
1H TOCSY (75MS)
0.02
M
7.4
pH
1.0
atm
300.0
K
REFINEMENT DETAILS CAN BE FOUND IN THE PLOS ONE CITATION ABOVE.
CNS
4
95% H2O/5% D2O
95% H20/5% D2O
BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN
refinement
CNS
1
structure solution
CCPNMR ANALYSIS
2.2
structure solution
TALOSPLUS 3.60F1
3.60F1
750
Bruker
Avance
600
Bruker
DMX
SER
1
n
1
SER
1
A
GLU
2
n
2
GLU
2
A
CYS
3
n
3
CYS
3
A
VAL
4
n
4
VAL
4
A
GLU
5
n
5
GLU
5
A
ASN
6
n
6
ASN
6
A
GLY
7
n
7
GLY
7
A
GLY
8
n
8
GLY
8
A
PHE
9
n
9
PHE
9
A
CYS
10
n
10
CYS
10
A
PRO
11
n
11
PRO
11
A
ASP
12
n
12
ASP
12
A
PRO
13
n
13
PRO
13
A
GLU
14
n
14
GLU
14
A
LYS
15
n
15
LYS
15
A
MET
16
n
16
MET
16
A
GLY
17
n
17
GLY
17
A
ASP
18
n
18
ASP
18
A
TRP
19
n
19
TRP
19
A
CYS
20
n
20
CYS
20
A
CYS
21
n
21
CYS
21
A
GLY
22
n
22
GLY
22
A
ARG
23
n
23
ARG
23
A
CYS
24
n
24
CYS
24
A
ILE
25
n
25
ILE
25
A
ARG
26
n
26
ARG
26
A
ASN
27
n
27
ASN
27
A
GLU
28
n
28
GLU
28
A
CYS
29
n
29
CYS
29
A
ARG
30
n
30
ARG
30
A
ASN
31
n
31
ASN
31
A
GLY
32
n
32
GLY
32
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
25
A
N
ILE
25
A
O
GLU
28
A
O
GLU
28
2
A
ASP
12
-44.36
109.55
3
A
CYS
3
56.98
150.50
3
A
ASP
12
-42.07
107.17
6
A
ASP
12
-45.07
108.11
7
A
PRO
11
-58.88
170.47
7
A
ASP
12
-46.22
109.05
8
A
CYS
3
52.90
172.02
11
A
ASP
12
-42.66
109.25
12
A
ASP
12
-37.60
114.91
16
A
CYS
3
52.67
-177.23
16
A
ASP
12
-46.63
108.39
S64
S64, a spider venom toxin peptide from Sicarius dolichocephalus
1
N
N
disulf
2.030
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
21
A
SG
CYS
21
1_555
disulf
2.033
A
CYS
10
A
SG
CYS
10
1_555
A
CYS
24
A
SG
CYS
24
1_555
disulf
2.022
A
CYS
20
A
SG
CYS
20
1_555
A
CYS
29
A
SG
CYS
29
1_555
TOXIN
TOXIN, SPIDER VENOM PEPTIDE, ICK
4B2V
PDB
1
4B2V
1
32
4B2V
1
32
4B2V
A
1
1
32
2
anti-parallel
A
ARG
23
A
ARG
23
A
ILE
25
A
ILE
25
A
GLU
28
A
GLU
28
A
ARG
30
A
ARG
30
1
P 1