0.010302 0.005948 0.000000 0.000000 0.011896 0.000000 0.000000 0.000000 0.007138 0.00000 0.00000 0.00000 Lechauve, C. Jager, M. Laguerre, L. Kiger, L. Correc, G. Leroux, C. Vinogradov, S. Czjzek, M. Marden, M.C. Bailly, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 97.070 97.070 140.100 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking O2 31.999 OXYGEN MOLECULE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 288 6957 10.1074/JBC.M112.407601 23288852 Neuroglobins: Pivotal Proteins Associated with Emerging Neural Systems and Precursors of Metazoan Globin Diversity. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 1 CCD 2009-03-02 ADSC QUANTUM 315r CCD ADSC CCD SINGLE WAVELENGTH M x-ray 1 SINGLE WAVELENGTH M x-ray 1 0.933 1.0 1.7387 1.0 ID23-1 ESRF 0.933 SYNCHROTRON ESRF BEAMLINE ID23-1 BM30A ESRF 1.7387 SYNCHROTRON ESRF BEAMLINE BM30A 17480.205 NEUROGLOBIN 1 man polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 31.999 OXYGEN MOLECULE 1 syn non-polymer 18.015 water 98 nat water no no MATLEAMQVSEEQQSLIMEDVQVLLPNYDDFVEDVLQQFMEENPETFQIFPWADASKTAKEMRSHPRFKSHAKSIGKVIS DCLVDLNGVKKHEPKLSSLGAMHTKKKVPTELFGKLGGCILTQVVKRVSEAKWSEEKKEAWLKAYGIITVMVTE MATLEAMQVSEEQQSLIMEDVQVLLPNYDDFVEDVLQQFMEENPETFQIFPWADASKTAKEMRSHPRFKSHAKSIGKVIS DCLVDLNGVKKHEPKLSSLGAMHTKKKVPTELFGKLGGCILTQVVKRVSEAKWSEEKKEAWLKAYGIITVMVTE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 84072 SYMSAGITTIFERA ROSCOFFENSIS 469008 ESCHERICHIA COLI BL21(DE3) 1 4.9 74.9 NONE 7.5 32% PEG 6000, 1.0 M LICL AND 0.1 M NA ACETATE, pH 7.5 repository Initial release Database references Database references Data collection 1 0 2013-01-09 1 1 2013-01-16 1 2 2013-03-27 1 3 2015-04-29 PDBE Y PDBE 2012-08-01 REL HEM PROTOPORPHYRIN IX CONTAINING FE OXY OXYGEN MOLECULE HOH water HEM 1155 2 HEM HEM 1155 A OXY 1156 3 OXY OXY 1156 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A ALA 6 n 6 ALA 6 A MET 7 n 7 MET 7 A GLN 8 n 8 GLN 8 A VAL 9 n 9 VAL 9 A SER 10 n 10 SER 10 A GLU 11 n 11 GLU 11 A GLU 12 n 12 GLU 12 A GLN 13 n 13 GLN 13 A GLN 14 n 14 GLN 14 A SER 15 n 15 SER 15 A LEU 16 n 16 LEU 16 A ILE 17 n 17 ILE 17 A MET 18 n 18 MET 18 A GLU 19 n 19 GLU 19 A ASP 20 n 20 ASP 20 A VAL 21 n 21 VAL 21 A GLN 22 n 22 GLN 22 A VAL 23 n 23 VAL 23 A LEU 24 n 24 LEU 24 A LEU 25 n 25 LEU 25 A PRO 26 n 26 PRO 26 A ASN 27 n 27 ASN 27 A TYR 28 n 28 TYR 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A PHE 31 n 31 PHE 31 A VAL 32 n 32 VAL 32 A GLU 33 n 33 GLU 33 A ASP 34 n 34 ASP 34 A VAL 35 n 35 VAL 35 A LEU 36 n 36 LEU 36 A GLN 37 n 37 GLN 37 A GLN 38 n 38 GLN 38 A PHE 39 n 39 PHE 39 A MET 40 n 40 MET 40 A GLU 41 n 41 GLU 41 A GLU 42 n 42 GLU 42 A ASN 43 n 43 ASN 43 A PRO 44 n 44 PRO 44 A GLU 45 n 45 GLU 45 A THR 46 n 46 THR 46 A PHE 47 n 47 PHE 47 A GLN 48 n 48 GLN 48 A ILE 49 n 49 ILE 49 A PHE 50 n 50 PHE 50 A PRO 51 n 51 PRO 51 A TRP 52 n 52 TRP 52 A ALA 53 n 53 ALA 53 A ASP 54 n 54 ASP 54 A ALA 55 n 55 ALA 55 A SER 56 n 56 SER 56 A LYS 57 n 57 LYS 57 A THR 58 n 58 THR 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A MET 62 n 62 MET 62 A ARG 63 n 63 ARG 63 A SER 64 n 64 SER 64 A HIS 65 n 65 HIS 65 A PRO 66 n 66 PRO 66 A ARG 67 n 67 ARG 67 A PHE 68 n 68 PHE 68 A LYS 69 n 69 LYS 69 A SER 70 n 70 SER 70 A HIS 71 n 71 HIS 71 A ALA 72 n 72 ALA 72 A LYS 73 n 73 LYS 73 A SER 74 n 74 SER 74 A ILE 75 n 75 ILE 75 A GLY 76 n 76 GLY 76 A LYS 77 n 77 LYS 77 A VAL 78 n 78 VAL 78 A ILE 79 n 79 ILE 79 A SER 80 n 80 SER 80 A ASP 81 n 81 ASP 81 A CYS 82 n 82 CYS 82 A LEU 83 n 83 LEU 83 A VAL 84 n 84 VAL 84 A ASP 85 n 85 ASP 85 A LEU 86 n 86 LEU 86 A ASN 87 n 87 ASN 87 A GLY 88 n 88 GLY 88 A VAL 89 n 89 VAL 89 A LYS 90 n 90 LYS 90 A LYS 91 n 91 LYS 91 A HIS 92 n 92 HIS 92 A GLU 93 n 93 GLU 93 A PRO 94 n 94 PRO 94 A LYS 95 n 95 LYS 95 A LEU 96 n 96 LEU 96 A SER 97 n 97 SER 97 A SER 98 n 98 SER 98 A LEU 99 n 99 LEU 99 A GLY 100 n 100 GLY 100 A ALA 101 n 101 ALA 101 A MET 102 n 102 MET 102 A HIS 103 n 103 HIS 103 A THR 104 n 104 THR 104 A LYS 105 n 105 LYS 105 A LYS 106 n 106 LYS 106 A LYS 107 n 107 LYS 107 A VAL 108 n 108 VAL 108 A PRO 109 n 109 PRO 109 A THR 110 n 110 THR 110 A GLU 111 n 111 GLU 111 A LEU 112 n 112 LEU 112 A PHE 113 n 113 PHE 113 A GLY 114 n 114 GLY 114 A LYS 115 n 115 LYS 115 A LEU 116 n 116 LEU 116 A GLY 117 n 117 GLY 117 A GLY 118 n 118 GLY 118 A CYS 119 n 119 CYS 119 A ILE 120 n 120 ILE 120 A LEU 121 n 121 LEU 121 A THR 122 n 122 THR 122 A GLN 123 n 123 GLN 123 A VAL 124 n 124 VAL 124 A VAL 125 n 125 VAL 125 A LYS 126 n 126 LYS 126 A ARG 127 n 127 ARG 127 A VAL 128 n 128 VAL 128 A SER 129 n 129 SER 129 A GLU 130 n 130 GLU 130 A ALA 131 n 131 ALA 131 A LYS 132 n 132 LYS 132 A TRP 133 n 133 TRP 133 A SER 134 n 134 SER 134 A GLU 135 n 135 GLU 135 A GLU 136 n 136 GLU 136 A LYS 137 n 137 LYS 137 A LYS 138 n 138 LYS 138 A GLU 139 n 139 GLU 139 A ALA 140 n 140 ALA 140 A TRP 141 n 141 TRP 141 A LEU 142 n 142 LEU 142 A LYS 143 n 143 LYS 143 A ALA 144 n 144 ALA 144 A TYR 145 n 145 TYR 145 A GLY 146 n 146 GLY 146 A ILE 147 n 147 ILE 147 A ILE 148 n 148 ILE 148 A THR 149 n 149 THR 149 A VAL 150 n 150 VAL 150 A MET 151 n 151 MET 151 A VAL 152 n 152 VAL 152 A THR 153 n 153 THR 153 A GLU 154 n 154 GLU 154 A author_and_software_defined_assembly PISA 2 dimeric 4080 -47.2 15170 A OXY 1156 C O2 OXY 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B NA HEM 1_555 89.7 A OXY 1156 C O2 OXY 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B NB HEM 1_555 88.8 A HEM 1155 B NA HEM 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B NB HEM 1_555 89.1 A OXY 1156 C O2 OXY 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B NC HEM 1_555 87.7 A HEM 1155 B NA HEM 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B NC HEM 1_555 176.3 A HEM 1155 B NB HEM 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B NC HEM 1_555 88.2 A OXY 1156 C O2 OXY 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B ND HEM 1_555 90.2 A HEM 1155 B NA HEM 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B ND HEM 1_555 93.1 A HEM 1155 B NB HEM 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B ND HEM 1_555 177.5 A HEM 1155 B NC HEM 1_555 A HEM 1155 B FE HEM 1_555 A HEM 1155 B ND HEM 1_555 89.5 A OXY 1156 C O2 OXY 1_555 A HEM 1155 B FE HEM 1_555 A HIS 103 A NE2 HIS 103 1_555 172.0 A HEM 1155 B NA HEM 1_555 A HEM 1155 B FE HEM 1_555 A HIS 103 A NE2 HIS 103 1_555 98.0 A HEM 1155 B NB HEM 1_555 A HEM 1155 B FE HEM 1_555 A HIS 103 A NE2 HIS 103 1_555 93.4 A HEM 1155 B NC HEM 1_555 A HEM 1155 B FE HEM 1_555 A HIS 103 A NE2 HIS 103 1_555 84.7 A HEM 1155 B ND HEM 1_555 A HEM 1155 B FE HEM 1_555 A HIS 103 A NE2 HIS 103 1_555 87.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_655 -x+y+1,y,-z crystal symmetry operation 97.0700000000 0.0000000000 0.0000000000 1 A CG LYS 95 A CG LYS 95 1 Y 1 A CD LYS 95 A CD LYS 95 1 Y 1 A CE LYS 95 A CE LYS 95 1 Y 1 A NZ LYS 95 A NZ LYS 95 1 Y 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A LEU 4 A LEU 4 1 Y 1 A GLU 5 A GLU 5 1 Y 1 A A O O HOH HOH 2043 2050 1.93 1 A A O O HOH HOH 2047 2086 1.96 1 A A LEU SER 96 97 149.09 1 10.96 1.60 110.90 121.86 A A A CG1 CB CG2 VAL VAL VAL 84 84 84 N 1 -15.70 2.30 111.70 96.00 A A A CD CE NZ LYS LYS LYS 137 137 137 N 1 A A CE NZ LYS LYS 126 126 0.164 0.025 1.486 1.650 N 1 A A O O HOH HOH 2079 2094 1.28 1_555 12_555 1 A A O O HOH HOH 2083 2083 1.69 1_555 12_555 1 A A O1A O HEM HOH 1155 2058 2.09 1_555 11_655 1 A A OE2 O GLU HOH 130 2034 2.12 1_555 12_555 1 A MET 7 -58.46 36.53 1 A ASP 85 -152.01 76.36 1 A LEU 96 -77.55 -77.56 1 A SER 97 56.07 -82.05 38.064 -0.51 -0.25 0.00 -0.51 0.00 0.76 0.940 0.926 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY 0.25084 0.21464 0.21650 2.30 30.06 904 16886 5.1 98.86 3.224 0.081 RANDOM 1 THROUGHOUT MAD 0.172 0.166 0.80 0.80 1.40 NONE MAXIMUM LIKELIHOOD MASK 2.30 30.06 98 1324 45 0 1181 0.029 0.022 1271 2.458 2.064 1729 6.210 5.000 152 32.751 25.849 53 17.974 15.000 237 18.724 15.000 3 0.165 0.200 184 0.013 0.021 937 1.437 1.500 749 2.588 2.000 1216 4.046 3.000 522 6.036 4.500 511 0.411 0.305 2.359 73 1201 20 98.76 2.30 2.36 4B4Y 20104 1.0 0.05 1 16.60 4.8 91.7 0.43 2.30 2.36 2.20 1 5.2 77.4 refinement REFMAC 5.5.0072 data reduction XDS data scaling XSCALE phasing SHELXD NEUROGLOBIN crystal structure of the neuroglobin from the photosymbiotic marine acoel Symsagittifera roscoffensis 1 N N 2 N N 3 N N 4 N N A SER 10 A SER 10 HELX_P A LEU 25 A LEU 25 1 1 16 A ASN 27 A ASN 27 HELX_P A ASN 43 A ASN 43 1 2 17 A GLU 45 A GLU 45 HELX_P A PHE 50 A PHE 50 1 3 6 A THR 58 A THR 58 HELX_P A ARG 63 A ARG 63 1 4 6 A HIS 65 A HIS 65 HELX_P A VAL 84 A VAL 84 1 5 20 A ASP 85 A ASP 85 HELX_P A LYS 91 A LYS 91 5 6 7 A HIS 92 A HIS 92 HELX_P A SER 97 A SER 97 1 7 6 A SER 98 A SER 98 HELX_P A HIS 103 A HIS 103 5 8 6 A THR 110 A THR 110 HELX_P A VAL 128 A VAL 128 1 9 19 A SER 134 A SER 134 HELX_P A GLU 154 A GLU 154 1 10 21 metalc 1.956 A HEM 1155 B FE HEM 1_555 A OXY 1156 C O2 OXY 1_555 metalc 1.970 A HEM 1155 B FE HEM 1_555 A HIS 103 A NE2 HIS 103 1_555 TRANSPORT PROTEIN TRANSPORT PROTEIN, NERVOUS SYSTEM EVOLUTION, GLOBIN EVOLUTION, CNIDARIAN, METAZOAN 4B4Y PDB 1 4B4Y 1 154 4B4Y 1 154 4B4Y A 1 1 154 BINDING SITE FOR RESIDUE HEM A 1155 Software 16 BINDING SITE FOR RESIDUE OXY A 1156 Software 3 A ILE 49 A ILE 49 16 1_555 A PHE 50 A PHE 50 16 1_555 A PRO 51 A PRO 51 16 1_555 A PRO 51 A PRO 51 16 11_655 A TRP 52 A TRP 52 16 1_555 A ARG 67 A ARG 67 16 11_655 A HIS 71 A HIS 71 16 1_555 A ILE 75 A ILE 75 16 1_555 A VAL 78 A VAL 78 16 1_555 A HIS 103 A HIS 103 16 1_555 A VAL 108 A VAL 108 16 1_555 A LEU 112 A LEU 112 16 1_555 A PHE 113 A PHE 113 16 1_555 A OXY 1156 C OXY 16 1_555 A HOH 2058 D HOH 16 11_655 A HOH 2061 D HOH 16 1_555 A HIS 71 A HIS 71 3 1_555 A ILE 75 A ILE 75 3 1_555 A HEM 1155 B HEM 3 1_555 180 P 62 2 2